Multiple sequence alignment - TraesCS5D01G378800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G378800 chr5D 100.000 3214 0 0 1 3214 450205990 450202777 0.000000e+00 5936
1 TraesCS5D01G378800 chr5D 89.111 1203 123 6 985 2181 562533803 562532603 0.000000e+00 1489
2 TraesCS5D01G378800 chr5D 79.322 1209 207 27 992 2169 562531171 562529975 0.000000e+00 808
3 TraesCS5D01G378800 chr5D 79.239 1209 208 27 992 2169 562488326 562487130 0.000000e+00 802
4 TraesCS5D01G378800 chr5D 90.832 469 41 2 1678 2146 561806668 561806202 7.570000e-176 627
5 TraesCS5D01G378800 chr5D 82.707 399 29 17 123 510 562834071 562834440 5.170000e-83 318
6 TraesCS5D01G378800 chr5D 91.964 224 18 0 1958 2181 561806262 561806039 6.690000e-82 315
7 TraesCS5D01G378800 chr5D 86.765 136 6 3 519 644 562947298 562947431 1.200000e-29 141
8 TraesCS5D01G378800 chr5D 86.765 136 6 3 519 644 563001214 563001081 1.200000e-29 141
9 TraesCS5D01G378800 chr5A 93.505 2171 116 13 16 2181 569545877 569543727 0.000000e+00 3205
10 TraesCS5D01G378800 chr5A 90.233 215 7 2 2180 2394 569543685 569543485 5.290000e-68 268
11 TraesCS5D01G378800 chr5B 93.738 1629 81 9 545 2171 550217669 550216060 0.000000e+00 2423
12 TraesCS5D01G378800 chr5B 93.413 501 19 7 20 511 550224011 550223516 0.000000e+00 730
13 TraesCS5D01G378800 chr5B 91.412 524 39 5 1661 2181 711725656 711725136 0.000000e+00 713
14 TraesCS5D01G378800 chr5B 91.435 432 15 7 2211 2624 550215959 550215532 1.000000e-159 573
15 TraesCS5D01G378800 chr5B 85.354 396 33 11 123 510 713016631 713017009 1.400000e-103 387
16 TraesCS5D01G378800 chr5B 86.817 311 11 13 20 317 550225643 550225350 1.440000e-83 320
17 TraesCS5D01G378800 chr5B 88.208 212 16 3 619 830 550224589 550224387 8.910000e-61 244
18 TraesCS5D01G378800 chr7B 87.839 1217 139 7 970 2181 120916 122128 0.000000e+00 1419
19 TraesCS5D01G378800 chr7B 88.544 1161 123 9 1026 2181 1148040 1149195 0.000000e+00 1399
20 TraesCS5D01G378800 chr7B 88.510 1114 128 0 1068 2181 1017579 1018692 0.000000e+00 1349
21 TraesCS5D01G378800 chr7B 79.489 1214 208 26 986 2169 128459 129661 0.000000e+00 824
22 TraesCS5D01G378800 chr7B 82.915 398 29 16 123 510 34371 34003 4.000000e-84 322
23 TraesCS5D01G378800 chr7B 95.082 122 6 0 2704 2825 62482894 62482773 3.270000e-45 193
24 TraesCS5D01G378800 chr7B 90.580 138 10 3 2691 2828 728628362 728628496 2.550000e-41 180
25 TraesCS5D01G378800 chr3A 91.827 208 12 4 20 222 30182456 30182663 5.250000e-73 285
26 TraesCS5D01G378800 chr7D 100.000 117 0 0 2705 2821 478364916 478365032 1.940000e-52 217
27 TraesCS5D01G378800 chr7D 96.610 118 4 0 2707 2824 430095732 430095849 2.530000e-46 196
28 TraesCS5D01G378800 chr7D 94.400 125 6 1 2705 2828 50726613 50726737 1.180000e-44 191
29 TraesCS5D01G378800 chr1B 97.479 119 3 0 2704 2822 325262095 325262213 1.510000e-48 204
30 TraesCS5D01G378800 chr1B 95.041 121 6 0 2705 2825 249210230 249210350 1.180000e-44 191
31 TraesCS5D01G378800 chr6B 91.489 141 9 3 2689 2827 365690 365551 1.180000e-44 191
32 TraesCS5D01G378800 chr1A 91.667 132 10 1 2698 2828 423657805 423657674 7.080000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G378800 chr5D 450202777 450205990 3213 True 5936.000000 5936 100.000000 1 3214 1 chr5D.!!$R1 3213
1 TraesCS5D01G378800 chr5D 562529975 562533803 3828 True 1148.500000 1489 84.216500 985 2181 2 chr5D.!!$R5 1196
2 TraesCS5D01G378800 chr5D 562487130 562488326 1196 True 802.000000 802 79.239000 992 2169 1 chr5D.!!$R2 1177
3 TraesCS5D01G378800 chr5D 561806039 561806668 629 True 471.000000 627 91.398000 1678 2181 2 chr5D.!!$R4 503
4 TraesCS5D01G378800 chr5A 569543485 569545877 2392 True 1736.500000 3205 91.869000 16 2394 2 chr5A.!!$R1 2378
5 TraesCS5D01G378800 chr5B 550215532 550217669 2137 True 1498.000000 2423 92.586500 545 2624 2 chr5B.!!$R2 2079
6 TraesCS5D01G378800 chr5B 711725136 711725656 520 True 713.000000 713 91.412000 1661 2181 1 chr5B.!!$R1 520
7 TraesCS5D01G378800 chr5B 550223516 550225643 2127 True 431.333333 730 89.479333 20 830 3 chr5B.!!$R3 810
8 TraesCS5D01G378800 chr7B 120916 122128 1212 False 1419.000000 1419 87.839000 970 2181 1 chr7B.!!$F1 1211
9 TraesCS5D01G378800 chr7B 1148040 1149195 1155 False 1399.000000 1399 88.544000 1026 2181 1 chr7B.!!$F4 1155
10 TraesCS5D01G378800 chr7B 1017579 1018692 1113 False 1349.000000 1349 88.510000 1068 2181 1 chr7B.!!$F3 1113
11 TraesCS5D01G378800 chr7B 128459 129661 1202 False 824.000000 824 79.489000 986 2169 1 chr7B.!!$F2 1183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 1181 0.031721 ACAGGTGTCGACGAAAGGAC 59.968 55.0 11.62 1.76 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2664 4810 0.036858 GGCCAGTGTTGAGTCTCCTC 60.037 60.0 0.0 0.0 38.27 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.050126 TGTATGGTCAGGGTTGTTTTGTA 57.950 39.130 0.00 0.00 0.00 2.41
127 129 4.164843 ACCACTGGTAAACAATCACACT 57.835 40.909 0.00 0.00 32.11 3.55
141 145 4.623932 ATCACACTCAAGCTTAGTTGGA 57.376 40.909 0.00 4.22 0.00 3.53
212 216 3.127425 ACTGTTCTGTGTAAAGGAGGC 57.873 47.619 0.00 0.00 0.00 4.70
238 242 4.523083 CAGTAAAAGGCCAGCCAACTATA 58.477 43.478 12.03 0.00 38.92 1.31
239 243 4.335594 CAGTAAAAGGCCAGCCAACTATAC 59.664 45.833 12.03 6.71 38.92 1.47
253 257 3.097342 ACTATACGACCCTGGTTGTCT 57.903 47.619 12.50 6.19 41.43 3.41
254 258 3.022406 ACTATACGACCCTGGTTGTCTC 58.978 50.000 12.50 0.00 41.43 3.36
292 296 7.547227 ACAGCACTTCATGTTTCTTTAAGTTT 58.453 30.769 0.00 0.00 0.00 2.66
325 338 2.597455 ACAAAGATTGACCCTGGTTGG 58.403 47.619 0.00 0.00 0.00 3.77
329 342 1.780309 AGATTGACCCTGGTTGGTGAA 59.220 47.619 0.00 0.00 39.24 3.18
336 548 1.308998 CCTGGTTGGTGAACACTGAC 58.691 55.000 4.96 4.34 33.27 3.51
349 561 6.071952 GGTGAACACTGACCAATTATCATGTT 60.072 38.462 4.96 13.46 33.95 2.71
383 595 4.219507 AGATGACGTGGGCTCTAGAATATG 59.780 45.833 0.00 0.00 0.00 1.78
388 600 3.766591 CGTGGGCTCTAGAATATGATCCT 59.233 47.826 0.00 0.00 0.00 3.24
397 609 6.470278 TCTAGAATATGATCCTGGCATGTTG 58.530 40.000 0.00 0.00 29.00 3.33
410 622 4.085009 TGGCATGTTGTCCACATATGAAA 58.915 39.130 10.38 0.00 45.06 2.69
411 623 4.525874 TGGCATGTTGTCCACATATGAAAA 59.474 37.500 10.38 0.00 45.06 2.29
424 636 0.393537 ATGAAAAGAGAGCGGGCCTG 60.394 55.000 7.41 7.41 0.00 4.85
432 644 3.984193 GAGCGGGCCTGCAACTGAT 62.984 63.158 37.26 16.86 37.31 2.90
489 701 1.156736 CCCGTCAGTTTGGCAAGTAG 58.843 55.000 0.00 0.00 0.00 2.57
495 707 3.006967 GTCAGTTTGGCAAGTAGAGAGGA 59.993 47.826 0.00 0.00 0.00 3.71
500 712 2.457598 TGGCAAGTAGAGAGGACGAAT 58.542 47.619 0.00 0.00 0.00 3.34
632 1104 7.938563 TTTGGAGGAATTCAAACGTATTTTG 57.061 32.000 7.93 0.00 45.38 2.44
672 1144 7.759886 CGAGAAAGTTTGACAAGATACATCCTA 59.240 37.037 0.00 0.00 0.00 2.94
673 1145 9.606631 GAGAAAGTTTGACAAGATACATCCTAT 57.393 33.333 0.00 0.00 0.00 2.57
674 1146 9.388506 AGAAAGTTTGACAAGATACATCCTATG 57.611 33.333 0.00 0.00 0.00 2.23
675 1147 8.511604 AAAGTTTGACAAGATACATCCTATGG 57.488 34.615 0.00 0.00 33.60 2.74
676 1148 6.595682 AGTTTGACAAGATACATCCTATGGG 58.404 40.000 0.00 0.00 33.60 4.00
677 1149 4.623932 TGACAAGATACATCCTATGGGC 57.376 45.455 0.00 0.00 33.60 5.36
678 1150 4.234550 TGACAAGATACATCCTATGGGCT 58.765 43.478 0.00 0.00 33.60 5.19
679 1151 5.402630 TGACAAGATACATCCTATGGGCTA 58.597 41.667 0.00 0.00 33.60 3.93
702 1174 2.056577 GGTAGAAAACAGGTGTCGACG 58.943 52.381 11.62 0.00 0.00 5.12
709 1181 0.031721 ACAGGTGTCGACGAAAGGAC 59.968 55.000 11.62 1.76 0.00 3.85
712 1184 1.343465 AGGTGTCGACGAAAGGACAAT 59.657 47.619 11.62 0.00 44.07 2.71
757 1230 1.220477 GAAGGCCAGGTGCTCTCTC 59.780 63.158 5.01 0.00 40.92 3.20
888 1516 4.950926 GTCGACAGACACAGATCAAAATG 58.049 43.478 11.55 0.00 46.32 2.32
1021 1656 0.887387 TTTGTACACCAAGAGCGCCC 60.887 55.000 2.29 0.00 33.75 6.13
1193 1954 3.703127 GGGGCCGTTCTCCTTCGT 61.703 66.667 0.00 0.00 0.00 3.85
1199 1960 3.119096 GTTCTCCTTCGTGCCGCC 61.119 66.667 0.00 0.00 0.00 6.13
1248 2009 4.612412 GCGTGGGTTGTGACGGGA 62.612 66.667 0.00 0.00 36.09 5.14
1251 2012 3.931247 TGGGTTGTGACGGGACCG 61.931 66.667 9.56 9.56 46.03 4.79
1415 2176 2.113139 CGTGGGTGCCAGAACCTT 59.887 61.111 0.00 0.00 40.35 3.50
1417 2178 0.673644 CGTGGGTGCCAGAACCTTAG 60.674 60.000 0.00 0.00 40.35 2.18
1709 2513 0.253327 CTAAGGGCCTCAACACCTCC 59.747 60.000 6.46 0.00 32.29 4.30
1763 2567 5.324784 TGTCATTGTATCTGAAGCGTAGT 57.675 39.130 0.00 0.00 0.00 2.73
1768 2572 4.106029 TGTATCTGAAGCGTAGTGGAAC 57.894 45.455 0.00 0.00 0.00 3.62
1774 2578 2.076863 GAAGCGTAGTGGAACAAGCAT 58.923 47.619 0.00 0.00 44.16 3.79
1964 2831 1.209504 ACTGGGGATAACCATGTCGTG 59.790 52.381 0.00 0.00 42.91 4.35
2175 3168 4.451629 ACCTGAGGTTAATGACTGTACG 57.548 45.455 0.00 0.00 27.29 3.67
2334 3414 4.779696 TGTGGGTACGTAAAAGGAAAAGT 58.220 39.130 0.00 0.00 0.00 2.66
2374 3454 0.249784 CATGCCCCTGAGTCATCTCG 60.250 60.000 0.00 0.00 43.09 4.04
2386 3466 4.440663 TGAGTCATCTCGCAGGATACTTTG 60.441 45.833 0.00 0.00 44.29 2.77
2415 3495 3.788116 TGTCCTCTTCCCTGGGTTATA 57.212 47.619 13.56 0.00 0.00 0.98
2416 3496 3.381335 TGTCCTCTTCCCTGGGTTATAC 58.619 50.000 13.56 5.78 0.00 1.47
2417 3497 3.013648 TGTCCTCTTCCCTGGGTTATACT 59.986 47.826 13.56 0.00 0.00 2.12
2418 3498 3.388350 GTCCTCTTCCCTGGGTTATACTG 59.612 52.174 13.56 0.00 0.00 2.74
2446 3526 3.134985 TGCTACAAATCCATACCGGCTTA 59.865 43.478 0.00 0.00 33.14 3.09
2493 4491 8.983724 GTAGAATTAGTTGGCTAGCTTAAGATG 58.016 37.037 15.72 0.00 0.00 2.90
2515 4513 2.176889 CTTAAGAAGTGTCGGGAGGGA 58.823 52.381 0.00 0.00 0.00 4.20
2596 4742 0.734889 CATTCATTCACAGACGGGCC 59.265 55.000 0.00 0.00 0.00 5.80
2604 4750 2.597217 CAGACGGGCCCAAGCAAA 60.597 61.111 24.92 0.00 42.56 3.68
2624 4770 5.822519 GCAAACAATAGTAGTGATGGATGGA 59.177 40.000 4.30 0.00 0.00 3.41
2625 4771 6.488006 GCAAACAATAGTAGTGATGGATGGAT 59.512 38.462 4.30 0.00 0.00 3.41
2626 4772 7.521099 GCAAACAATAGTAGTGATGGATGGATG 60.521 40.741 4.30 0.00 0.00 3.51
2627 4773 6.119240 ACAATAGTAGTGATGGATGGATGG 57.881 41.667 4.30 0.00 0.00 3.51
2628 4774 5.846164 ACAATAGTAGTGATGGATGGATGGA 59.154 40.000 4.30 0.00 0.00 3.41
2629 4775 6.503217 ACAATAGTAGTGATGGATGGATGGAT 59.497 38.462 4.30 0.00 0.00 3.41
2630 4776 4.904895 AGTAGTGATGGATGGATGGATG 57.095 45.455 0.00 0.00 0.00 3.51
2631 4777 2.581216 AGTGATGGATGGATGGATGC 57.419 50.000 0.00 0.00 0.00 3.91
2633 4779 1.075050 GTGATGGATGGATGGATGCCT 59.925 52.381 0.00 0.00 0.00 4.75
2634 4780 1.784593 TGATGGATGGATGGATGCCTT 59.215 47.619 0.00 0.00 0.00 4.35
2636 4782 2.852714 TGGATGGATGGATGCCTTTT 57.147 45.000 0.00 0.00 0.00 2.27
2637 4783 2.669781 TGGATGGATGGATGCCTTTTC 58.330 47.619 0.00 0.00 0.00 2.29
2638 4784 2.245546 TGGATGGATGGATGCCTTTTCT 59.754 45.455 0.00 0.00 0.00 2.52
2639 4785 2.626743 GGATGGATGGATGCCTTTTCTG 59.373 50.000 0.00 0.00 0.00 3.02
2640 4786 3.559069 GATGGATGGATGCCTTTTCTGA 58.441 45.455 0.00 0.00 0.00 3.27
2641 4787 2.726821 TGGATGGATGCCTTTTCTGAC 58.273 47.619 0.00 0.00 0.00 3.51
2642 4788 2.309755 TGGATGGATGCCTTTTCTGACT 59.690 45.455 0.00 0.00 0.00 3.41
2643 4789 2.686915 GGATGGATGCCTTTTCTGACTG 59.313 50.000 0.00 0.00 0.00 3.51
2646 4792 3.614092 TGGATGCCTTTTCTGACTGATC 58.386 45.455 0.00 0.00 0.00 2.92
2648 4794 3.376546 GGATGCCTTTTCTGACTGATCAC 59.623 47.826 0.00 0.00 0.00 3.06
2650 4796 4.090761 TGCCTTTTCTGACTGATCACTT 57.909 40.909 0.00 0.00 0.00 3.16
2651 4797 4.464008 TGCCTTTTCTGACTGATCACTTT 58.536 39.130 0.00 0.00 0.00 2.66
2652 4798 4.276678 TGCCTTTTCTGACTGATCACTTTG 59.723 41.667 0.00 0.00 0.00 2.77
2654 4800 5.334724 GCCTTTTCTGACTGATCACTTTGAG 60.335 44.000 0.00 0.00 0.00 3.02
2655 4801 5.994054 CCTTTTCTGACTGATCACTTTGAGA 59.006 40.000 0.00 0.00 0.00 3.27
2656 4802 6.654161 CCTTTTCTGACTGATCACTTTGAGAT 59.346 38.462 0.00 0.00 0.00 2.75
2658 4804 5.990120 TCTGACTGATCACTTTGAGATCA 57.010 39.130 5.82 5.82 46.96 2.92
2667 4813 7.270779 TGATCACTTTGAGATCATAGTTGAGG 58.729 38.462 3.54 0.00 44.98 3.86
2668 4814 6.857437 TCACTTTGAGATCATAGTTGAGGA 57.143 37.500 3.54 0.00 36.29 3.71
2669 4815 6.871844 TCACTTTGAGATCATAGTTGAGGAG 58.128 40.000 3.54 0.00 36.29 3.69
2673 4819 7.147915 ACTTTGAGATCATAGTTGAGGAGACTC 60.148 40.741 0.00 0.00 41.34 3.36
2683 4829 2.062070 AGGAGACTCAACACTGGCC 58.938 57.895 4.53 0.00 32.90 5.36
2684 4830 1.003233 GGAGACTCAACACTGGCCC 60.003 63.158 0.00 0.00 0.00 5.80
2685 4831 1.374758 GAGACTCAACACTGGCCCG 60.375 63.158 0.00 0.00 0.00 6.13
2686 4832 2.358737 GACTCAACACTGGCCCGG 60.359 66.667 0.00 0.00 0.00 5.73
2687 4833 4.643387 ACTCAACACTGGCCCGGC 62.643 66.667 0.00 0.00 0.00 6.13
2700 4846 2.566010 CCGGCCCGTGTTCATTTG 59.434 61.111 0.85 0.00 0.00 2.32
2701 4847 2.265182 CCGGCCCGTGTTCATTTGT 61.265 57.895 0.85 0.00 0.00 2.83
2702 4848 0.956410 CCGGCCCGTGTTCATTTGTA 60.956 55.000 0.85 0.00 0.00 2.41
2705 4851 2.702261 GGCCCGTGTTCATTTGTACTA 58.298 47.619 0.00 0.00 0.00 1.82
2706 4852 2.417586 GGCCCGTGTTCATTTGTACTAC 59.582 50.000 0.00 0.00 0.00 2.73
2707 4853 3.332034 GCCCGTGTTCATTTGTACTACT 58.668 45.455 0.00 0.00 0.00 2.57
2710 4856 3.930848 CCGTGTTCATTTGTACTACTCCC 59.069 47.826 0.00 0.00 0.00 4.30
2711 4857 4.322499 CCGTGTTCATTTGTACTACTCCCT 60.322 45.833 0.00 0.00 0.00 4.20
2712 4858 4.863131 CGTGTTCATTTGTACTACTCCCTC 59.137 45.833 0.00 0.00 0.00 4.30
2713 4859 5.176592 GTGTTCATTTGTACTACTCCCTCC 58.823 45.833 0.00 0.00 0.00 4.30
2714 4860 4.081862 TGTTCATTTGTACTACTCCCTCCG 60.082 45.833 0.00 0.00 0.00 4.63
2715 4861 3.705051 TCATTTGTACTACTCCCTCCGT 58.295 45.455 0.00 0.00 0.00 4.69
2717 4863 2.134789 TTGTACTACTCCCTCCGTCC 57.865 55.000 0.00 0.00 0.00 4.79
2718 4864 0.107508 TGTACTACTCCCTCCGTCCG 60.108 60.000 0.00 0.00 0.00 4.79
2719 4865 0.179000 GTACTACTCCCTCCGTCCGA 59.821 60.000 0.00 0.00 0.00 4.55
2720 4866 0.911769 TACTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
2721 4867 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2723 4869 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
2724 4870 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2725 4871 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2726 4872 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2727 4873 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2728 4874 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2729 4875 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2731 4877 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2733 4879 4.378774 TCCGTCCGAAAATACTTGTCAAA 58.621 39.130 0.00 0.00 0.00 2.69
2734 4880 4.449743 TCCGTCCGAAAATACTTGTCAAAG 59.550 41.667 0.00 0.00 39.49 2.77
2735 4881 4.449743 CCGTCCGAAAATACTTGTCAAAGA 59.550 41.667 0.00 0.00 36.84 2.52
2736 4882 5.049954 CCGTCCGAAAATACTTGTCAAAGAA 60.050 40.000 0.00 0.00 36.84 2.52
2737 4883 6.423862 CGTCCGAAAATACTTGTCAAAGAAA 58.576 36.000 0.00 0.00 36.84 2.52
2738 4884 7.075741 CGTCCGAAAATACTTGTCAAAGAAAT 58.924 34.615 0.00 0.00 36.84 2.17
2739 4885 7.059488 CGTCCGAAAATACTTGTCAAAGAAATG 59.941 37.037 0.00 0.00 36.84 2.32
2742 4888 8.028938 CCGAAAATACTTGTCAAAGAAATGGAT 58.971 33.333 0.00 0.00 36.84 3.41
2743 4889 8.853345 CGAAAATACTTGTCAAAGAAATGGATG 58.147 33.333 0.00 0.00 36.84 3.51
2750 4896 9.388506 ACTTGTCAAAGAAATGGATGTATCTAG 57.611 33.333 0.00 0.00 36.84 2.43
2751 4897 9.605275 CTTGTCAAAGAAATGGATGTATCTAGA 57.395 33.333 0.00 0.00 35.19 2.43
2753 4899 8.539544 TGTCAAAGAAATGGATGTATCTAGACA 58.460 33.333 0.00 0.00 36.03 3.41
2754 4900 9.553064 GTCAAAGAAATGGATGTATCTAGACAT 57.447 33.333 0.00 0.00 42.82 3.06
2777 4923 9.962783 ACATATTTTAGTTCTAGATACGTCCAC 57.037 33.333 0.00 0.00 0.00 4.02
2781 4927 9.939802 ATTTTAGTTCTAGATACGTCCACTTTT 57.060 29.630 0.00 0.00 0.00 2.27
2785 4931 7.714703 AGTTCTAGATACGTCCACTTTTATCC 58.285 38.462 0.00 0.00 0.00 2.59
2786 4932 7.341256 AGTTCTAGATACGTCCACTTTTATCCA 59.659 37.037 0.00 0.00 0.00 3.41
2788 4934 8.246430 TCTAGATACGTCCACTTTTATCCATT 57.754 34.615 0.00 0.00 0.00 3.16
2791 4937 7.565680 AGATACGTCCACTTTTATCCATTTCT 58.434 34.615 0.00 0.00 0.00 2.52
2792 4938 5.880054 ACGTCCACTTTTATCCATTTCTG 57.120 39.130 0.00 0.00 0.00 3.02
2794 4940 4.662145 GTCCACTTTTATCCATTTCTGCG 58.338 43.478 0.00 0.00 0.00 5.18
2795 4941 4.394920 GTCCACTTTTATCCATTTCTGCGA 59.605 41.667 0.00 0.00 0.00 5.10
2797 4943 4.155826 CCACTTTTATCCATTTCTGCGACA 59.844 41.667 0.00 0.00 0.00 4.35
2800 4946 5.473504 ACTTTTATCCATTTCTGCGACAAGT 59.526 36.000 0.00 0.00 0.00 3.16
2801 4947 6.653320 ACTTTTATCCATTTCTGCGACAAGTA 59.347 34.615 0.00 0.00 0.00 2.24
2802 4948 7.174253 ACTTTTATCCATTTCTGCGACAAGTAA 59.826 33.333 0.00 0.00 0.00 2.24
2803 4949 7.624360 TTTATCCATTTCTGCGACAAGTAAT 57.376 32.000 0.00 0.00 0.00 1.89
2804 4950 7.624360 TTATCCATTTCTGCGACAAGTAATT 57.376 32.000 0.00 0.00 0.00 1.40
2805 4951 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
2806 4952 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
2809 4955 1.546923 TCTGCGACAAGTAATTCCGGA 59.453 47.619 0.00 0.00 0.00 5.14
2810 4956 1.659098 CTGCGACAAGTAATTCCGGAC 59.341 52.381 1.83 0.00 0.00 4.79
2811 4957 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
2813 4959 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2814 4960 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2816 4962 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2817 4963 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
2819 4965 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
2822 4968 0.032813 TTCCGGACGGAGGGAGTATT 60.033 55.000 13.64 0.00 46.06 1.89
2823 4969 0.032813 TCCGGACGGAGGGAGTATTT 60.033 55.000 9.76 0.00 39.76 1.40
2824 4970 0.104304 CCGGACGGAGGGAGTATTTG 59.896 60.000 4.40 0.00 37.50 2.32
2825 4971 0.822164 CGGACGGAGGGAGTATTTGT 59.178 55.000 0.00 0.00 0.00 2.83
2826 4972 1.206371 CGGACGGAGGGAGTATTTGTT 59.794 52.381 0.00 0.00 0.00 2.83
2827 4973 2.354403 CGGACGGAGGGAGTATTTGTTT 60.354 50.000 0.00 0.00 0.00 2.83
2828 4974 3.119029 CGGACGGAGGGAGTATTTGTTTA 60.119 47.826 0.00 0.00 0.00 2.01
2830 4976 4.322953 GGACGGAGGGAGTATTTGTTTACA 60.323 45.833 0.00 0.00 0.00 2.41
2831 4977 5.231702 ACGGAGGGAGTATTTGTTTACAA 57.768 39.130 0.00 0.00 0.00 2.41
2848 4994 8.364129 TGTTTACAAAAGAAAGCAAATGATCC 57.636 30.769 0.00 0.00 0.00 3.36
2850 4996 8.825745 GTTTACAAAAGAAAGCAAATGATCCAA 58.174 29.630 0.00 0.00 0.00 3.53
2851 4997 6.849588 ACAAAAGAAAGCAAATGATCCAAC 57.150 33.333 0.00 0.00 0.00 3.77
2852 4998 6.585416 ACAAAAGAAAGCAAATGATCCAACT 58.415 32.000 0.00 0.00 0.00 3.16
2854 5000 5.397142 AAGAAAGCAAATGATCCAACTCC 57.603 39.130 0.00 0.00 0.00 3.85
2856 5002 3.463048 AAGCAAATGATCCAACTCCCT 57.537 42.857 0.00 0.00 0.00 4.20
2857 5003 3.463048 AGCAAATGATCCAACTCCCTT 57.537 42.857 0.00 0.00 0.00 3.95
2858 5004 3.359950 AGCAAATGATCCAACTCCCTTC 58.640 45.455 0.00 0.00 0.00 3.46
2860 5006 3.766051 GCAAATGATCCAACTCCCTTCTT 59.234 43.478 0.00 0.00 0.00 2.52
2861 5007 4.221482 GCAAATGATCCAACTCCCTTCTTT 59.779 41.667 0.00 0.00 0.00 2.52
2862 5008 5.418840 GCAAATGATCCAACTCCCTTCTTTA 59.581 40.000 0.00 0.00 0.00 1.85
2863 5009 6.097412 GCAAATGATCCAACTCCCTTCTTTAT 59.903 38.462 0.00 0.00 0.00 1.40
2864 5010 7.364144 GCAAATGATCCAACTCCCTTCTTTATT 60.364 37.037 0.00 0.00 0.00 1.40
2865 5011 7.651027 AATGATCCAACTCCCTTCTTTATTG 57.349 36.000 0.00 0.00 0.00 1.90
2866 5012 6.387192 TGATCCAACTCCCTTCTTTATTGA 57.613 37.500 0.00 0.00 0.00 2.57
2868 5014 6.830324 TGATCCAACTCCCTTCTTTATTGATG 59.170 38.462 0.00 0.00 0.00 3.07
2872 5018 5.677319 ACTCCCTTCTTTATTGATGACGA 57.323 39.130 0.00 0.00 0.00 4.20
2873 5019 6.240549 ACTCCCTTCTTTATTGATGACGAT 57.759 37.500 0.00 0.00 0.00 3.73
2874 5020 6.051717 ACTCCCTTCTTTATTGATGACGATG 58.948 40.000 0.00 0.00 0.00 3.84
2875 5021 6.127054 ACTCCCTTCTTTATTGATGACGATGA 60.127 38.462 0.00 0.00 0.00 2.92
2876 5022 6.649155 TCCCTTCTTTATTGATGACGATGAA 58.351 36.000 0.00 0.00 0.00 2.57
2877 5023 6.538742 TCCCTTCTTTATTGATGACGATGAAC 59.461 38.462 0.00 0.00 0.00 3.18
2878 5024 6.540189 CCCTTCTTTATTGATGACGATGAACT 59.460 38.462 0.00 0.00 0.00 3.01
2880 5026 9.265901 CCTTCTTTATTGATGACGATGAACTAT 57.734 33.333 0.00 0.00 0.00 2.12
2888 5034 8.541133 TTGATGACGATGAACTATTTACACAA 57.459 30.769 0.00 0.00 0.00 3.33
2889 5035 8.541133 TGATGACGATGAACTATTTACACAAA 57.459 30.769 0.00 0.00 0.00 2.83
2891 5037 7.124347 TGACGATGAACTATTTACACAAACC 57.876 36.000 0.00 0.00 0.00 3.27
2893 5039 5.998981 ACGATGAACTATTTACACAAACCCA 59.001 36.000 0.00 0.00 0.00 4.51
2894 5040 6.487331 ACGATGAACTATTTACACAAACCCAA 59.513 34.615 0.00 0.00 0.00 4.12
2895 5041 7.013464 ACGATGAACTATTTACACAAACCCAAA 59.987 33.333 0.00 0.00 0.00 3.28
2896 5042 7.537306 CGATGAACTATTTACACAAACCCAAAG 59.463 37.037 0.00 0.00 0.00 2.77
2897 5043 7.045126 TGAACTATTTACACAAACCCAAAGG 57.955 36.000 0.00 0.00 40.04 3.11
2907 5053 4.275781 CCCAAAGGGCACTTGTGT 57.724 55.556 0.00 0.00 35.35 3.72
2909 5055 0.958822 CCCAAAGGGCACTTGTGTAC 59.041 55.000 0.00 0.00 35.35 2.90
2910 5056 1.686355 CCAAAGGGCACTTGTGTACA 58.314 50.000 0.00 0.00 36.93 2.90
2911 5057 1.608590 CCAAAGGGCACTTGTGTACAG 59.391 52.381 0.00 0.00 36.93 2.74
2912 5058 2.571212 CAAAGGGCACTTGTGTACAGA 58.429 47.619 0.00 0.00 36.93 3.41
2913 5059 3.149196 CAAAGGGCACTTGTGTACAGAT 58.851 45.455 0.00 0.00 36.93 2.90
2915 5061 0.804989 GGGCACTTGTGTACAGATGC 59.195 55.000 9.50 9.50 37.63 3.91
2916 5062 0.804989 GGCACTTGTGTACAGATGCC 59.195 55.000 18.61 18.61 45.25 4.40
2917 5063 1.611673 GGCACTTGTGTACAGATGCCT 60.612 52.381 23.60 0.00 46.58 4.75
2918 5064 2.154462 GCACTTGTGTACAGATGCCTT 58.846 47.619 7.23 0.00 34.44 4.35
2919 5065 2.554032 GCACTTGTGTACAGATGCCTTT 59.446 45.455 7.23 0.00 34.44 3.11
2921 5067 4.499696 GCACTTGTGTACAGATGCCTTTTT 60.500 41.667 7.23 0.00 34.44 1.94
2922 5068 4.977963 CACTTGTGTACAGATGCCTTTTTG 59.022 41.667 0.00 0.00 0.00 2.44
2923 5069 4.644685 ACTTGTGTACAGATGCCTTTTTGT 59.355 37.500 0.00 0.00 0.00 2.83
2925 5071 5.181690 TGTGTACAGATGCCTTTTTGTTC 57.818 39.130 0.00 0.00 0.00 3.18
2926 5072 4.887071 TGTGTACAGATGCCTTTTTGTTCT 59.113 37.500 0.00 0.00 0.00 3.01
2927 5073 6.058833 TGTGTACAGATGCCTTTTTGTTCTA 58.941 36.000 0.00 0.00 0.00 2.10
2928 5074 6.017440 TGTGTACAGATGCCTTTTTGTTCTAC 60.017 38.462 0.00 0.00 0.00 2.59
2929 5075 6.017440 GTGTACAGATGCCTTTTTGTTCTACA 60.017 38.462 0.00 0.00 0.00 2.74
2930 5076 6.714810 TGTACAGATGCCTTTTTGTTCTACAT 59.285 34.615 0.00 0.00 0.00 2.29
2931 5077 6.017400 ACAGATGCCTTTTTGTTCTACATG 57.983 37.500 0.00 0.00 0.00 3.21
2932 5078 5.769662 ACAGATGCCTTTTTGTTCTACATGA 59.230 36.000 0.00 0.00 0.00 3.07
2933 5079 6.265196 ACAGATGCCTTTTTGTTCTACATGAA 59.735 34.615 0.00 0.00 0.00 2.57
2935 5081 8.461222 CAGATGCCTTTTTGTTCTACATGAATA 58.539 33.333 0.00 0.00 36.99 1.75
2936 5082 8.680903 AGATGCCTTTTTGTTCTACATGAATAG 58.319 33.333 0.00 0.00 36.99 1.73
2937 5083 7.156876 TGCCTTTTTGTTCTACATGAATAGG 57.843 36.000 0.00 0.00 36.99 2.57
2938 5084 6.945435 TGCCTTTTTGTTCTACATGAATAGGA 59.055 34.615 0.00 0.00 36.99 2.94
2939 5085 7.094377 TGCCTTTTTGTTCTACATGAATAGGAC 60.094 37.037 0.00 0.00 36.99 3.85
2940 5086 7.121315 GCCTTTTTGTTCTACATGAATAGGACT 59.879 37.037 0.00 0.00 36.99 3.85
2941 5087 9.014297 CCTTTTTGTTCTACATGAATAGGACTT 57.986 33.333 0.00 0.00 36.99 3.01
2960 5106 8.367660 AGGACTTTATTCTCAGATAGTTGACA 57.632 34.615 0.00 0.00 0.00 3.58
2961 5107 8.986991 AGGACTTTATTCTCAGATAGTTGACAT 58.013 33.333 0.00 0.00 0.00 3.06
2994 5140 9.613428 TGAAGGAAAGATAATTGACATATCGTT 57.387 29.630 0.00 0.00 35.24 3.85
3033 5179 9.710900 AATAATTGAAAAACAAAGTCAGGGATC 57.289 29.630 0.00 0.00 42.03 3.36
3034 5180 4.829064 TGAAAAACAAAGTCAGGGATCG 57.171 40.909 0.00 0.00 0.00 3.69
3035 5181 4.456535 TGAAAAACAAAGTCAGGGATCGA 58.543 39.130 0.00 0.00 0.00 3.59
3036 5182 4.515191 TGAAAAACAAAGTCAGGGATCGAG 59.485 41.667 0.00 0.00 0.00 4.04
3037 5183 2.100605 AACAAAGTCAGGGATCGAGC 57.899 50.000 0.00 0.00 0.00 5.03
3038 5184 1.270907 ACAAAGTCAGGGATCGAGCT 58.729 50.000 0.00 0.00 0.00 4.09
3040 5186 1.480137 CAAAGTCAGGGATCGAGCTCT 59.520 52.381 12.85 0.00 0.00 4.09
3041 5187 1.398692 AAGTCAGGGATCGAGCTCTC 58.601 55.000 12.85 3.05 0.00 3.20
3042 5188 0.467290 AGTCAGGGATCGAGCTCTCC 60.467 60.000 12.85 12.70 0.00 3.71
3048 5194 2.403252 GGATCGAGCTCTCCCAAAAA 57.597 50.000 12.85 0.00 0.00 1.94
3049 5195 2.924421 GGATCGAGCTCTCCCAAAAAT 58.076 47.619 12.85 0.00 0.00 1.82
3050 5196 2.875317 GGATCGAGCTCTCCCAAAAATC 59.125 50.000 12.85 2.21 0.00 2.17
3051 5197 3.535561 GATCGAGCTCTCCCAAAAATCA 58.464 45.455 12.85 0.00 0.00 2.57
3053 5199 2.567169 TCGAGCTCTCCCAAAAATCAGA 59.433 45.455 12.85 0.00 0.00 3.27
3054 5200 2.935201 CGAGCTCTCCCAAAAATCAGAG 59.065 50.000 12.85 0.00 36.27 3.35
3057 5203 3.526841 AGCTCTCCCAAAAATCAGAGGAT 59.473 43.478 0.00 0.00 34.14 3.24
3058 5204 3.882288 GCTCTCCCAAAAATCAGAGGATC 59.118 47.826 0.00 0.00 34.14 3.36
3079 5225 8.986991 AGGATCTATTGGTATAAGAATAGCTGG 58.013 37.037 0.00 0.00 37.06 4.85
3080 5226 7.713073 GGATCTATTGGTATAAGAATAGCTGGC 59.287 40.741 0.00 0.00 37.06 4.85
3082 5228 8.895141 TCTATTGGTATAAGAATAGCTGGCTA 57.105 34.615 4.72 4.72 37.06 3.93
3084 5230 7.798710 ATTGGTATAAGAATAGCTGGCTAGA 57.201 36.000 0.00 0.00 37.06 2.43
3086 5232 5.186021 TGGTATAAGAATAGCTGGCTAGAGC 59.814 44.000 0.00 0.00 37.06 4.09
3087 5233 5.186021 GGTATAAGAATAGCTGGCTAGAGCA 59.814 44.000 0.00 0.00 41.83 4.26
3089 5235 3.959535 AGAATAGCTGGCTAGAGCATC 57.040 47.619 0.00 2.18 44.36 3.91
3092 5238 1.043816 TAGCTGGCTAGAGCATCCAC 58.956 55.000 0.00 0.00 44.36 4.02
3093 5239 0.690411 AGCTGGCTAGAGCATCCACT 60.690 55.000 0.00 0.00 44.36 4.00
3095 5241 1.270041 GCTGGCTAGAGCATCCACTAC 60.270 57.143 0.00 0.00 44.36 2.73
3097 5243 0.315568 GGCTAGAGCATCCACTACCG 59.684 60.000 3.54 0.00 44.36 4.02
3099 5245 1.269309 GCTAGAGCATCCACTACCGTG 60.269 57.143 0.00 0.00 41.59 4.94
3100 5246 2.025155 CTAGAGCATCCACTACCGTGT 58.975 52.381 0.00 0.00 39.55 4.49
3101 5247 1.267121 AGAGCATCCACTACCGTGTT 58.733 50.000 0.00 0.00 39.55 3.32
3102 5248 1.623811 AGAGCATCCACTACCGTGTTT 59.376 47.619 0.00 0.00 39.55 2.83
3104 5250 0.168128 GCATCCACTACCGTGTTTGC 59.832 55.000 0.00 0.00 39.55 3.68
3105 5251 1.808411 CATCCACTACCGTGTTTGCT 58.192 50.000 0.00 0.00 39.55 3.91
3106 5252 2.151202 CATCCACTACCGTGTTTGCTT 58.849 47.619 0.00 0.00 39.55 3.91
3107 5253 1.873698 TCCACTACCGTGTTTGCTTC 58.126 50.000 0.00 0.00 39.55 3.86
3108 5254 1.414919 TCCACTACCGTGTTTGCTTCT 59.585 47.619 0.00 0.00 39.55 2.85
3109 5255 2.629137 TCCACTACCGTGTTTGCTTCTA 59.371 45.455 0.00 0.00 39.55 2.10
3110 5256 2.993899 CCACTACCGTGTTTGCTTCTAG 59.006 50.000 0.00 0.00 39.55 2.43
3111 5257 3.305813 CCACTACCGTGTTTGCTTCTAGA 60.306 47.826 0.00 0.00 39.55 2.43
3112 5258 4.495422 CACTACCGTGTTTGCTTCTAGAT 58.505 43.478 0.00 0.00 36.39 1.98
3113 5259 5.393787 CCACTACCGTGTTTGCTTCTAGATA 60.394 44.000 0.00 0.00 39.55 1.98
3114 5260 5.744345 CACTACCGTGTTTGCTTCTAGATAG 59.256 44.000 0.00 0.00 36.39 2.08
3115 5261 3.522553 ACCGTGTTTGCTTCTAGATAGC 58.477 45.455 15.74 15.74 39.10 2.97
3116 5262 3.056107 ACCGTGTTTGCTTCTAGATAGCA 60.056 43.478 19.33 19.33 46.26 3.49
3125 5271 6.721704 TGCTTCTAGATAGCAATGAGAGAA 57.278 37.500 20.34 0.00 45.05 2.87
3126 5272 6.747125 TGCTTCTAGATAGCAATGAGAGAAG 58.253 40.000 20.34 0.00 45.05 2.85
3127 5273 6.158598 GCTTCTAGATAGCAATGAGAGAAGG 58.841 44.000 16.99 0.00 39.09 3.46
3128 5274 6.015519 GCTTCTAGATAGCAATGAGAGAAGGA 60.016 42.308 16.99 0.00 39.09 3.36
3129 5275 7.471260 GCTTCTAGATAGCAATGAGAGAAGGAA 60.471 40.741 16.99 0.00 39.09 3.36
3131 5277 7.721402 TCTAGATAGCAATGAGAGAAGGAAAC 58.279 38.462 0.00 0.00 0.00 2.78
3149 5295 7.124573 AGGAAACTTTTGTAAAATCCAGCTT 57.875 32.000 9.59 0.00 37.44 3.74
3151 5297 6.983890 GGAAACTTTTGTAAAATCCAGCTTGA 59.016 34.615 0.00 0.00 0.00 3.02
3152 5298 7.169813 GGAAACTTTTGTAAAATCCAGCTTGAG 59.830 37.037 0.00 0.00 0.00 3.02
3153 5299 6.959639 ACTTTTGTAAAATCCAGCTTGAGA 57.040 33.333 0.00 0.00 0.00 3.27
3154 5300 7.346751 ACTTTTGTAAAATCCAGCTTGAGAA 57.653 32.000 0.00 0.00 0.00 2.87
3155 5301 7.955918 ACTTTTGTAAAATCCAGCTTGAGAAT 58.044 30.769 0.00 0.00 0.00 2.40
3156 5302 9.077885 ACTTTTGTAAAATCCAGCTTGAGAATA 57.922 29.630 0.00 0.00 0.00 1.75
3159 5305 9.859427 TTTGTAAAATCCAGCTTGAGAATATTG 57.141 29.630 0.00 0.00 0.00 1.90
3160 5306 7.483307 TGTAAAATCCAGCTTGAGAATATTGC 58.517 34.615 0.00 0.00 0.00 3.56
3161 5307 6.534475 AAAATCCAGCTTGAGAATATTGCA 57.466 33.333 0.00 0.00 0.00 4.08
3163 5309 4.226427 TCCAGCTTGAGAATATTGCACT 57.774 40.909 0.00 0.00 0.00 4.40
3164 5310 4.194640 TCCAGCTTGAGAATATTGCACTC 58.805 43.478 0.00 0.00 0.00 3.51
3165 5311 3.314635 CCAGCTTGAGAATATTGCACTCC 59.685 47.826 0.00 0.00 0.00 3.85
3166 5312 3.002042 CAGCTTGAGAATATTGCACTCCG 59.998 47.826 0.00 0.00 0.00 4.63
3167 5313 2.939103 GCTTGAGAATATTGCACTCCGT 59.061 45.455 0.00 0.00 0.00 4.69
3168 5314 3.242543 GCTTGAGAATATTGCACTCCGTG 60.243 47.826 0.00 0.00 36.51 4.94
3171 5317 5.529581 TGAGAATATTGCACTCCGTGATA 57.470 39.130 0.00 0.00 35.23 2.15
3173 5319 5.069119 TGAGAATATTGCACTCCGTGATAGT 59.931 40.000 0.00 0.00 35.23 2.12
3174 5320 5.918608 AGAATATTGCACTCCGTGATAGTT 58.081 37.500 0.00 0.00 35.23 2.24
3176 5322 1.438651 TTGCACTCCGTGATAGTTGC 58.561 50.000 0.00 0.00 35.23 4.17
3177 5323 0.320050 TGCACTCCGTGATAGTTGCA 59.680 50.000 0.00 0.00 35.23 4.08
3178 5324 1.270571 TGCACTCCGTGATAGTTGCAA 60.271 47.619 0.00 0.00 35.23 4.08
3179 5325 1.128692 GCACTCCGTGATAGTTGCAAC 59.871 52.381 22.17 22.17 35.23 4.17
3180 5326 1.732259 CACTCCGTGATAGTTGCAACC 59.268 52.381 25.62 11.44 35.23 3.77
3181 5327 1.623811 ACTCCGTGATAGTTGCAACCT 59.376 47.619 25.62 13.79 0.00 3.50
3182 5328 2.271800 CTCCGTGATAGTTGCAACCTC 58.728 52.381 25.62 21.39 0.00 3.85
3183 5329 1.066430 TCCGTGATAGTTGCAACCTCC 60.066 52.381 25.62 14.65 0.00 4.30
3184 5330 1.338674 CCGTGATAGTTGCAACCTCCA 60.339 52.381 25.62 16.96 0.00 3.86
3185 5331 2.422597 CGTGATAGTTGCAACCTCCAA 58.577 47.619 25.62 7.25 0.00 3.53
3186 5332 2.811431 CGTGATAGTTGCAACCTCCAAA 59.189 45.455 25.62 4.66 0.00 3.28
3187 5333 3.364964 CGTGATAGTTGCAACCTCCAAAC 60.365 47.826 25.62 14.97 0.00 2.93
3189 5335 2.738587 TAGTTGCAACCTCCAAACCA 57.261 45.000 25.62 0.00 0.00 3.67
3190 5336 2.086610 AGTTGCAACCTCCAAACCAT 57.913 45.000 25.62 0.05 0.00 3.55
3201 5347 1.474330 CCAAACCATGGTAAGCCTCC 58.526 55.000 20.12 0.00 44.85 4.30
3202 5348 1.005924 CCAAACCATGGTAAGCCTCCT 59.994 52.381 20.12 0.00 44.85 3.69
3203 5349 2.094675 CAAACCATGGTAAGCCTCCTG 58.905 52.381 20.12 2.11 35.27 3.86
3204 5350 1.668826 AACCATGGTAAGCCTCCTGA 58.331 50.000 20.12 0.00 35.27 3.86
3205 5351 1.898863 ACCATGGTAAGCCTCCTGAT 58.101 50.000 18.10 0.00 35.27 2.90
3206 5352 2.208872 ACCATGGTAAGCCTCCTGATT 58.791 47.619 18.10 0.00 35.27 2.57
3208 5354 2.441001 CCATGGTAAGCCTCCTGATTCT 59.559 50.000 2.57 0.00 35.27 2.40
3209 5355 3.474600 CATGGTAAGCCTCCTGATTCTG 58.525 50.000 0.00 0.00 35.27 3.02
3210 5356 2.832838 TGGTAAGCCTCCTGATTCTGA 58.167 47.619 0.00 0.00 35.27 3.27
3213 5359 4.968719 TGGTAAGCCTCCTGATTCTGAATA 59.031 41.667 2.28 0.00 35.27 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.836479 ACAGTAAGTACTCCTTCTGTAAACT 57.164 36.000 15.49 0.00 38.56 2.66
1 2 8.883954 AAACAGTAAGTACTCCTTCTGTAAAC 57.116 34.615 16.61 0.00 38.99 2.01
2 3 9.895138 AAAAACAGTAAGTACTCCTTCTGTAAA 57.105 29.630 16.61 0.00 38.99 2.01
84 86 1.970640 ACCATCTTGACCCTTTTTGGC 59.029 47.619 0.00 0.00 0.00 4.52
212 216 1.305930 GGCTGGCCTTTTACTGGACG 61.306 60.000 3.32 0.00 34.69 4.79
238 242 0.321671 CATGAGACAACCAGGGTCGT 59.678 55.000 0.00 0.00 40.20 4.34
239 243 0.321671 ACATGAGACAACCAGGGTCG 59.678 55.000 0.00 0.00 40.20 4.79
253 257 4.623932 AGTGCTGTTCCTTAAGACATGA 57.376 40.909 3.36 0.00 0.00 3.07
254 258 4.756642 TGAAGTGCTGTTCCTTAAGACATG 59.243 41.667 3.36 0.00 0.00 3.21
292 296 7.040686 GGGTCAATCTTTGTAAAGCAGAGTTAA 60.041 37.037 0.00 0.00 35.99 2.01
325 338 6.500684 ACATGATAATTGGTCAGTGTTCAC 57.499 37.500 0.00 0.00 0.00 3.18
329 342 5.477984 AGCAAACATGATAATTGGTCAGTGT 59.522 36.000 0.00 0.00 29.48 3.55
341 553 8.764287 CGTCATCTACAAATAGCAAACATGATA 58.236 33.333 0.00 0.00 0.00 2.15
349 561 4.188462 CCCACGTCATCTACAAATAGCAA 58.812 43.478 0.00 0.00 0.00 3.91
383 595 1.098050 GTGGACAACATGCCAGGATC 58.902 55.000 0.00 0.00 34.22 3.36
397 609 3.557595 CCGCTCTCTTTTCATATGTGGAC 59.442 47.826 1.90 0.00 0.00 4.02
410 622 3.640407 TTGCAGGCCCGCTCTCTT 61.640 61.111 13.21 0.00 0.00 2.85
411 623 4.400961 GTTGCAGGCCCGCTCTCT 62.401 66.667 13.21 0.00 0.00 3.10
424 636 3.373439 CCTTGAGCACTTCTATCAGTTGC 59.627 47.826 0.00 0.00 0.00 4.17
432 644 7.432148 TGGTTTATATCCTTGAGCACTTCTA 57.568 36.000 0.00 0.00 0.00 2.10
489 701 4.938080 TGCTCTTCATAATTCGTCCTCTC 58.062 43.478 0.00 0.00 0.00 3.20
495 707 6.815641 CCTATGCTATGCTCTTCATAATTCGT 59.184 38.462 0.00 0.00 37.22 3.85
500 712 6.126940 GGGATCCTATGCTATGCTCTTCATAA 60.127 42.308 12.58 0.00 37.22 1.90
584 796 2.564062 CCTTGTTGAATGGATGCACCTT 59.436 45.455 0.00 0.00 39.86 3.50
644 1116 7.201478 GGATGTATCTTGTCAAACTTTCTCGAG 60.201 40.741 5.93 5.93 0.00 4.04
649 1121 8.616076 CCATAGGATGTATCTTGTCAAACTTTC 58.384 37.037 0.00 0.00 0.00 2.62
672 1144 3.117512 CCTGTTTTCTACCCATAGCCCAT 60.118 47.826 0.00 0.00 0.00 4.00
673 1145 2.241176 CCTGTTTTCTACCCATAGCCCA 59.759 50.000 0.00 0.00 0.00 5.36
674 1146 2.241430 ACCTGTTTTCTACCCATAGCCC 59.759 50.000 0.00 0.00 0.00 5.19
675 1147 3.279434 CACCTGTTTTCTACCCATAGCC 58.721 50.000 0.00 0.00 0.00 3.93
676 1148 3.939592 GACACCTGTTTTCTACCCATAGC 59.060 47.826 0.00 0.00 0.00 2.97
677 1149 4.081862 TCGACACCTGTTTTCTACCCATAG 60.082 45.833 0.00 0.00 0.00 2.23
678 1150 3.833650 TCGACACCTGTTTTCTACCCATA 59.166 43.478 0.00 0.00 0.00 2.74
679 1151 2.635915 TCGACACCTGTTTTCTACCCAT 59.364 45.455 0.00 0.00 0.00 4.00
702 1174 5.009010 TGCTTCTTGTCTTCATTGTCCTTTC 59.991 40.000 0.00 0.00 0.00 2.62
709 1181 4.082949 TGCTCATGCTTCTTGTCTTCATTG 60.083 41.667 0.00 0.00 40.48 2.82
712 1184 2.810274 GTGCTCATGCTTCTTGTCTTCA 59.190 45.455 0.00 0.00 40.48 3.02
888 1516 3.445096 AGTAAGTGCCTGCCATTGATTTC 59.555 43.478 0.00 0.00 0.00 2.17
1199 1960 2.815211 CACATGTCGCCGGACCAG 60.815 66.667 5.05 0.00 42.73 4.00
1325 2086 1.989508 TTCCTCCAGCCGCATGAGA 60.990 57.895 9.96 0.00 0.00 3.27
1329 2090 2.586792 GAGTTCCTCCAGCCGCAT 59.413 61.111 0.00 0.00 0.00 4.73
1763 2567 1.448985 GGCGAAGTATGCTTGTTCCA 58.551 50.000 0.00 0.00 34.61 3.53
1768 2572 1.075542 TTGTCGGCGAAGTATGCTTG 58.924 50.000 12.92 0.00 34.61 4.01
1774 2578 2.288334 TGCTTAAGTTGTCGGCGAAGTA 60.288 45.455 12.92 0.00 0.00 2.24
1964 2831 3.595819 GCATGGTTGCTCCCAGAC 58.404 61.111 0.00 0.00 45.77 3.51
2027 3020 1.376812 GTCATTGTGGGTCCCGGAC 60.377 63.158 9.30 9.30 0.00 4.79
2222 3287 4.946157 AGTTTTGCCCTGAATACATGAGAG 59.054 41.667 0.00 0.00 0.00 3.20
2223 3288 4.701651 CAGTTTTGCCCTGAATACATGAGA 59.298 41.667 0.00 0.00 31.38 3.27
2334 3414 4.274978 TGTAGACGGAATGGACACATCTA 58.725 43.478 0.00 0.00 35.94 1.98
2374 3454 4.396166 ACATGTGTAAGCAAAGTATCCTGC 59.604 41.667 0.00 0.00 38.91 4.85
2386 3466 2.237392 AGGGAAGAGGACATGTGTAAGC 59.763 50.000 1.15 0.00 0.00 3.09
2395 3475 2.661176 ATAACCCAGGGAAGAGGACA 57.339 50.000 14.54 0.00 0.00 4.02
2415 3495 6.598064 GGTATGGATTTGTAGCAAAGTACAGT 59.402 38.462 0.00 0.00 34.41 3.55
2416 3496 6.238103 CGGTATGGATTTGTAGCAAAGTACAG 60.238 42.308 0.00 0.00 34.41 2.74
2417 3497 5.583061 CGGTATGGATTTGTAGCAAAGTACA 59.417 40.000 0.00 0.78 0.00 2.90
2418 3498 5.007332 CCGGTATGGATTTGTAGCAAAGTAC 59.993 44.000 0.00 0.00 42.00 2.73
2438 3518 6.218746 CCGTCTTACTAATTAATAAGCCGGT 58.781 40.000 21.68 2.39 42.26 5.28
2446 3526 8.015185 TCTACCAAGCCGTCTTACTAATTAAT 57.985 34.615 0.00 0.00 0.00 1.40
2493 4491 2.094130 CCCTCCCGACACTTCTTAAGAC 60.094 54.545 4.18 0.00 0.00 3.01
2596 4742 5.647658 TCCATCACTACTATTGTTTGCTTGG 59.352 40.000 0.00 0.00 0.00 3.61
2604 4750 5.846164 TCCATCCATCCATCACTACTATTGT 59.154 40.000 0.00 0.00 0.00 2.71
2624 4770 3.726557 TCAGTCAGAAAAGGCATCCAT 57.273 42.857 0.00 0.00 0.00 3.41
2625 4771 3.009363 TGATCAGTCAGAAAAGGCATCCA 59.991 43.478 0.00 0.00 0.00 3.41
2626 4772 3.376546 GTGATCAGTCAGAAAAGGCATCC 59.623 47.826 0.00 0.00 34.36 3.51
2627 4773 4.260170 AGTGATCAGTCAGAAAAGGCATC 58.740 43.478 0.00 0.00 34.36 3.91
2628 4774 4.298103 AGTGATCAGTCAGAAAAGGCAT 57.702 40.909 0.00 0.00 34.36 4.40
2629 4775 3.777106 AGTGATCAGTCAGAAAAGGCA 57.223 42.857 0.00 0.00 34.36 4.75
2630 4776 4.516698 TCAAAGTGATCAGTCAGAAAAGGC 59.483 41.667 2.86 0.00 34.36 4.35
2631 4777 5.994054 TCTCAAAGTGATCAGTCAGAAAAGG 59.006 40.000 2.86 0.00 34.36 3.11
2633 4779 7.219322 TGATCTCAAAGTGATCAGTCAGAAAA 58.781 34.615 2.86 0.00 43.47 2.29
2634 4780 6.762333 TGATCTCAAAGTGATCAGTCAGAAA 58.238 36.000 2.86 0.00 43.47 2.52
2636 4782 5.990120 TGATCTCAAAGTGATCAGTCAGA 57.010 39.130 2.86 6.41 43.47 3.27
2643 4789 7.495901 TCCTCAACTATGATCTCAAAGTGATC 58.504 38.462 0.00 0.00 40.34 2.92
2646 4792 6.756074 GTCTCCTCAACTATGATCTCAAAGTG 59.244 42.308 0.00 0.00 34.37 3.16
2648 4794 7.111247 AGTCTCCTCAACTATGATCTCAAAG 57.889 40.000 0.00 0.00 34.37 2.77
2650 4796 6.190587 TGAGTCTCCTCAACTATGATCTCAA 58.809 40.000 0.00 0.00 44.67 3.02
2651 4797 5.760131 TGAGTCTCCTCAACTATGATCTCA 58.240 41.667 0.00 0.00 44.67 3.27
2663 4809 0.681733 GCCAGTGTTGAGTCTCCTCA 59.318 55.000 0.00 0.00 45.95 3.86
2664 4810 0.036858 GGCCAGTGTTGAGTCTCCTC 60.037 60.000 0.00 0.00 38.27 3.71
2665 4811 1.484444 GGGCCAGTGTTGAGTCTCCT 61.484 60.000 4.39 0.00 0.00 3.69
2667 4813 1.374758 CGGGCCAGTGTTGAGTCTC 60.375 63.158 4.39 0.00 0.00 3.36
2668 4814 2.743718 CGGGCCAGTGTTGAGTCT 59.256 61.111 4.39 0.00 0.00 3.24
2669 4815 2.358737 CCGGGCCAGTGTTGAGTC 60.359 66.667 4.39 0.00 0.00 3.36
2683 4829 0.956410 TACAAATGAACACGGGCCGG 60.956 55.000 31.78 21.03 0.00 6.13
2684 4830 0.167251 GTACAAATGAACACGGGCCG 59.833 55.000 27.06 27.06 0.00 6.13
2685 4831 1.530323 AGTACAAATGAACACGGGCC 58.470 50.000 0.00 0.00 0.00 5.80
2686 4832 3.332034 AGTAGTACAAATGAACACGGGC 58.668 45.455 2.52 0.00 0.00 6.13
2687 4833 3.930848 GGAGTAGTACAAATGAACACGGG 59.069 47.826 2.52 0.00 0.00 5.28
2689 4835 4.817517 AGGGAGTAGTACAAATGAACACG 58.182 43.478 2.52 0.00 0.00 4.49
2690 4836 5.176592 GGAGGGAGTAGTACAAATGAACAC 58.823 45.833 2.52 0.00 0.00 3.32
2691 4837 4.081862 CGGAGGGAGTAGTACAAATGAACA 60.082 45.833 2.52 0.00 0.00 3.18
2692 4838 4.081807 ACGGAGGGAGTAGTACAAATGAAC 60.082 45.833 2.52 0.00 0.00 3.18
2694 4840 3.698040 GACGGAGGGAGTAGTACAAATGA 59.302 47.826 2.52 0.00 0.00 2.57
2695 4841 3.181478 GGACGGAGGGAGTAGTACAAATG 60.181 52.174 2.52 0.00 0.00 2.32
2696 4842 3.029570 GGACGGAGGGAGTAGTACAAAT 58.970 50.000 2.52 0.00 0.00 2.32
2697 4843 2.450476 GGACGGAGGGAGTAGTACAAA 58.550 52.381 2.52 0.00 0.00 2.83
2700 4846 0.179000 TCGGACGGAGGGAGTAGTAC 59.821 60.000 0.00 0.00 0.00 2.73
2701 4847 0.911769 TTCGGACGGAGGGAGTAGTA 59.088 55.000 0.00 0.00 0.00 1.82
2702 4848 0.038744 TTTCGGACGGAGGGAGTAGT 59.961 55.000 0.00 0.00 0.00 2.73
2705 4851 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2706 4852 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2707 4853 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2710 4856 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2711 4857 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2712 4858 4.449743 TCTTTGACAAGTATTTTCGGACGG 59.550 41.667 0.00 0.00 0.00 4.79
2713 4859 5.585500 TCTTTGACAAGTATTTTCGGACG 57.415 39.130 0.00 0.00 0.00 4.79
2714 4860 7.326063 CCATTTCTTTGACAAGTATTTTCGGAC 59.674 37.037 0.00 0.00 0.00 4.79
2715 4861 7.229707 TCCATTTCTTTGACAAGTATTTTCGGA 59.770 33.333 0.00 0.00 0.00 4.55
2717 4863 8.853345 CATCCATTTCTTTGACAAGTATTTTCG 58.147 33.333 0.00 0.00 0.00 3.46
2718 4864 9.696917 ACATCCATTTCTTTGACAAGTATTTTC 57.303 29.630 0.00 0.00 0.00 2.29
2724 4870 9.388506 CTAGATACATCCATTTCTTTGACAAGT 57.611 33.333 0.00 0.00 0.00 3.16
2725 4871 9.605275 TCTAGATACATCCATTTCTTTGACAAG 57.395 33.333 0.00 0.00 0.00 3.16
2726 4872 9.383519 GTCTAGATACATCCATTTCTTTGACAA 57.616 33.333 0.00 0.00 0.00 3.18
2727 4873 8.539544 TGTCTAGATACATCCATTTCTTTGACA 58.460 33.333 0.00 0.00 32.89 3.58
2728 4874 8.948631 TGTCTAGATACATCCATTTCTTTGAC 57.051 34.615 0.00 0.00 0.00 3.18
2751 4897 9.962783 GTGGACGTATCTAGAACTAAAATATGT 57.037 33.333 0.00 0.00 0.00 2.29
2755 4901 9.939802 AAAAGTGGACGTATCTAGAACTAAAAT 57.060 29.630 0.00 0.00 0.00 1.82
2759 4905 8.844244 GGATAAAAGTGGACGTATCTAGAACTA 58.156 37.037 0.00 0.00 0.00 2.24
2760 4906 7.341256 TGGATAAAAGTGGACGTATCTAGAACT 59.659 37.037 0.00 0.00 0.00 3.01
2761 4907 7.486647 TGGATAAAAGTGGACGTATCTAGAAC 58.513 38.462 0.00 0.00 0.00 3.01
2764 4910 8.888579 AAATGGATAAAAGTGGACGTATCTAG 57.111 34.615 0.00 0.00 0.00 2.43
2766 4912 7.495934 CAGAAATGGATAAAAGTGGACGTATCT 59.504 37.037 0.00 0.00 0.00 1.98
2767 4913 7.630924 CAGAAATGGATAAAAGTGGACGTATC 58.369 38.462 0.00 0.00 0.00 2.24
2768 4914 6.038271 GCAGAAATGGATAAAAGTGGACGTAT 59.962 38.462 0.00 0.00 0.00 3.06
2769 4915 5.353123 GCAGAAATGGATAAAAGTGGACGTA 59.647 40.000 0.00 0.00 0.00 3.57
2771 4917 4.662145 GCAGAAATGGATAAAAGTGGACG 58.338 43.478 0.00 0.00 0.00 4.79
2772 4918 4.394920 TCGCAGAAATGGATAAAAGTGGAC 59.605 41.667 0.00 0.00 0.00 4.02
2773 4919 4.394920 GTCGCAGAAATGGATAAAAGTGGA 59.605 41.667 0.00 0.00 39.69 4.02
2774 4920 4.155826 TGTCGCAGAAATGGATAAAAGTGG 59.844 41.667 0.00 0.00 39.69 4.00
2777 4923 5.942872 ACTTGTCGCAGAAATGGATAAAAG 58.057 37.500 0.00 0.00 39.69 2.27
2778 4924 5.957842 ACTTGTCGCAGAAATGGATAAAA 57.042 34.783 0.00 0.00 39.69 1.52
2779 4925 7.624360 ATTACTTGTCGCAGAAATGGATAAA 57.376 32.000 0.00 0.00 39.69 1.40
2780 4926 7.201696 GGAATTACTTGTCGCAGAAATGGATAA 60.202 37.037 0.00 0.00 39.69 1.75
2781 4927 6.260050 GGAATTACTTGTCGCAGAAATGGATA 59.740 38.462 0.00 0.00 39.69 2.59
2782 4928 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
2783 4929 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
2784 4930 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
2785 4931 4.334443 CGGAATTACTTGTCGCAGAAATG 58.666 43.478 0.00 0.00 39.69 2.32
2786 4932 3.374058 CCGGAATTACTTGTCGCAGAAAT 59.626 43.478 0.00 0.00 39.69 2.17
2788 4934 2.028839 TCCGGAATTACTTGTCGCAGAA 60.029 45.455 0.00 0.00 39.69 3.02
2791 4937 1.717194 GTCCGGAATTACTTGTCGCA 58.283 50.000 5.23 0.00 0.00 5.10
2792 4938 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
2794 4940 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2795 4941 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2797 4943 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
2800 4946 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
2801 4947 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
2802 4948 0.187851 ATACTCCCTCCGTCCGGAAT 59.812 55.000 5.23 0.00 44.66 3.01
2803 4949 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
2804 4950 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
2805 4951 0.104304 CAAATACTCCCTCCGTCCGG 59.896 60.000 0.00 0.00 0.00 5.14
2806 4952 0.822164 ACAAATACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
2809 4955 4.895668 TGTAAACAAATACTCCCTCCGT 57.104 40.909 0.00 0.00 0.00 4.69
2810 4956 6.428771 TCTTTTGTAAACAAATACTCCCTCCG 59.571 38.462 8.96 0.00 44.30 4.63
2811 4957 7.754851 TCTTTTGTAAACAAATACTCCCTCC 57.245 36.000 8.96 0.00 44.30 4.30
2813 4959 8.141909 GCTTTCTTTTGTAAACAAATACTCCCT 58.858 33.333 8.96 0.00 44.30 4.20
2814 4960 7.923878 TGCTTTCTTTTGTAAACAAATACTCCC 59.076 33.333 8.96 0.00 44.30 4.30
2822 4968 8.825745 GGATCATTTGCTTTCTTTTGTAAACAA 58.174 29.630 0.00 0.00 0.00 2.83
2823 4969 7.984050 TGGATCATTTGCTTTCTTTTGTAAACA 59.016 29.630 0.00 0.00 0.00 2.83
2824 4970 8.364129 TGGATCATTTGCTTTCTTTTGTAAAC 57.636 30.769 0.00 0.00 0.00 2.01
2825 4971 8.825745 GTTGGATCATTTGCTTTCTTTTGTAAA 58.174 29.630 0.00 0.00 0.00 2.01
2826 4972 8.203485 AGTTGGATCATTTGCTTTCTTTTGTAA 58.797 29.630 0.00 0.00 0.00 2.41
2827 4973 7.725251 AGTTGGATCATTTGCTTTCTTTTGTA 58.275 30.769 0.00 0.00 0.00 2.41
2828 4974 6.585416 AGTTGGATCATTTGCTTTCTTTTGT 58.415 32.000 0.00 0.00 0.00 2.83
2830 4976 6.226052 GGAGTTGGATCATTTGCTTTCTTTT 58.774 36.000 0.00 0.00 0.00 2.27
2831 4977 5.279657 GGGAGTTGGATCATTTGCTTTCTTT 60.280 40.000 0.00 0.00 0.00 2.52
2832 4978 4.221482 GGGAGTTGGATCATTTGCTTTCTT 59.779 41.667 0.00 0.00 0.00 2.52
2833 4979 3.766051 GGGAGTTGGATCATTTGCTTTCT 59.234 43.478 0.00 0.00 0.00 2.52
2834 4980 3.766051 AGGGAGTTGGATCATTTGCTTTC 59.234 43.478 0.00 0.00 0.00 2.62
2836 4982 3.463048 AGGGAGTTGGATCATTTGCTT 57.537 42.857 0.00 0.00 0.00 3.91
2837 4983 3.011032 AGAAGGGAGTTGGATCATTTGCT 59.989 43.478 0.00 0.00 0.00 3.91
2838 4984 3.359950 AGAAGGGAGTTGGATCATTTGC 58.640 45.455 0.00 0.00 0.00 3.68
2839 4985 5.990120 AAAGAAGGGAGTTGGATCATTTG 57.010 39.130 0.00 0.00 0.00 2.32
2840 4986 7.895429 TCAATAAAGAAGGGAGTTGGATCATTT 59.105 33.333 0.00 0.00 0.00 2.32
2841 4987 7.413446 TCAATAAAGAAGGGAGTTGGATCATT 58.587 34.615 0.00 0.00 0.00 2.57
2843 4989 6.387192 TCAATAAAGAAGGGAGTTGGATCA 57.613 37.500 0.00 0.00 0.00 2.92
2844 4990 7.012799 GTCATCAATAAAGAAGGGAGTTGGATC 59.987 40.741 0.00 0.00 0.00 3.36
2845 4991 6.830838 GTCATCAATAAAGAAGGGAGTTGGAT 59.169 38.462 0.00 0.00 0.00 3.41
2846 4992 6.180472 GTCATCAATAAAGAAGGGAGTTGGA 58.820 40.000 0.00 0.00 0.00 3.53
2847 4993 5.065218 CGTCATCAATAAAGAAGGGAGTTGG 59.935 44.000 0.00 0.00 0.00 3.77
2848 4994 5.874810 TCGTCATCAATAAAGAAGGGAGTTG 59.125 40.000 0.00 0.00 0.00 3.16
2850 4996 5.677319 TCGTCATCAATAAAGAAGGGAGT 57.323 39.130 0.00 0.00 0.00 3.85
2851 4997 6.283694 TCATCGTCATCAATAAAGAAGGGAG 58.716 40.000 0.00 0.00 0.00 4.30
2852 4998 6.233905 TCATCGTCATCAATAAAGAAGGGA 57.766 37.500 0.00 0.00 0.00 4.20
2854 5000 7.545362 AGTTCATCGTCATCAATAAAGAAGG 57.455 36.000 0.00 0.00 0.00 3.46
2861 5007 9.810545 TGTGTAAATAGTTCATCGTCATCAATA 57.189 29.630 0.00 0.00 0.00 1.90
2862 5008 8.716646 TGTGTAAATAGTTCATCGTCATCAAT 57.283 30.769 0.00 0.00 0.00 2.57
2863 5009 8.541133 TTGTGTAAATAGTTCATCGTCATCAA 57.459 30.769 0.00 0.00 0.00 2.57
2864 5010 8.440059 GTTTGTGTAAATAGTTCATCGTCATCA 58.560 33.333 0.00 0.00 0.00 3.07
2865 5011 7.903431 GGTTTGTGTAAATAGTTCATCGTCATC 59.097 37.037 0.00 0.00 0.00 2.92
2866 5012 7.148306 GGGTTTGTGTAAATAGTTCATCGTCAT 60.148 37.037 0.00 0.00 0.00 3.06
2868 5014 6.148150 TGGGTTTGTGTAAATAGTTCATCGTC 59.852 38.462 0.00 0.00 0.00 4.20
2872 5018 7.256154 CCCTTTGGGTTTGTGTAAATAGTTCAT 60.256 37.037 0.00 0.00 38.25 2.57
2873 5019 6.041069 CCCTTTGGGTTTGTGTAAATAGTTCA 59.959 38.462 0.00 0.00 38.25 3.18
2874 5020 6.452242 CCCTTTGGGTTTGTGTAAATAGTTC 58.548 40.000 0.00 0.00 38.25 3.01
2875 5021 5.221561 GCCCTTTGGGTTTGTGTAAATAGTT 60.222 40.000 4.42 0.00 46.51 2.24
2876 5022 4.282449 GCCCTTTGGGTTTGTGTAAATAGT 59.718 41.667 4.42 0.00 46.51 2.12
2877 5023 4.282195 TGCCCTTTGGGTTTGTGTAAATAG 59.718 41.667 4.42 0.00 46.51 1.73
2878 5024 4.039366 GTGCCCTTTGGGTTTGTGTAAATA 59.961 41.667 4.42 0.00 46.51 1.40
2880 5026 2.168728 GTGCCCTTTGGGTTTGTGTAAA 59.831 45.455 4.42 0.00 46.51 2.01
2881 5027 1.757699 GTGCCCTTTGGGTTTGTGTAA 59.242 47.619 4.42 0.00 46.51 2.41
2883 5029 0.325203 AGTGCCCTTTGGGTTTGTGT 60.325 50.000 4.42 0.00 46.51 3.72
2885 5031 0.829990 CAAGTGCCCTTTGGGTTTGT 59.170 50.000 4.42 0.00 46.51 2.83
2888 5034 0.325203 ACACAAGTGCCCTTTGGGTT 60.325 50.000 4.42 0.00 46.51 4.11
2889 5035 0.553819 TACACAAGTGCCCTTTGGGT 59.446 50.000 4.42 5.37 46.51 4.51
2891 5037 1.608590 CTGTACACAAGTGCCCTTTGG 59.391 52.381 0.00 0.00 0.00 3.28
2893 5039 3.149196 CATCTGTACACAAGTGCCCTTT 58.851 45.455 0.00 0.00 0.00 3.11
2894 5040 2.783135 CATCTGTACACAAGTGCCCTT 58.217 47.619 0.00 0.00 0.00 3.95
2895 5041 1.611673 GCATCTGTACACAAGTGCCCT 60.612 52.381 0.00 0.00 33.11 5.19
2896 5042 0.804989 GCATCTGTACACAAGTGCCC 59.195 55.000 0.00 0.00 33.11 5.36
2897 5043 0.804989 GGCATCTGTACACAAGTGCC 59.195 55.000 16.98 16.98 43.96 5.01
2898 5044 1.813513 AGGCATCTGTACACAAGTGC 58.186 50.000 0.00 9.10 36.30 4.40
2899 5045 4.836125 AAAAGGCATCTGTACACAAGTG 57.164 40.909 0.00 0.00 0.00 3.16
2900 5046 4.644685 ACAAAAAGGCATCTGTACACAAGT 59.355 37.500 0.00 0.00 0.00 3.16
2901 5047 5.186996 ACAAAAAGGCATCTGTACACAAG 57.813 39.130 0.00 0.00 0.00 3.16
2902 5048 5.359576 AGAACAAAAAGGCATCTGTACACAA 59.640 36.000 0.00 0.00 0.00 3.33
2903 5049 4.887071 AGAACAAAAAGGCATCTGTACACA 59.113 37.500 0.00 0.00 0.00 3.72
2905 5051 6.058833 TGTAGAACAAAAAGGCATCTGTACA 58.941 36.000 0.00 0.00 0.00 2.90
2906 5052 6.554334 TGTAGAACAAAAAGGCATCTGTAC 57.446 37.500 0.00 0.00 0.00 2.90
2907 5053 6.939730 TCATGTAGAACAAAAAGGCATCTGTA 59.060 34.615 0.00 0.00 0.00 2.74
2909 5055 6.258230 TCATGTAGAACAAAAAGGCATCTG 57.742 37.500 0.00 0.00 0.00 2.90
2910 5056 6.899393 TTCATGTAGAACAAAAAGGCATCT 57.101 33.333 0.00 0.00 0.00 2.90
2911 5057 7.917505 CCTATTCATGTAGAACAAAAAGGCATC 59.082 37.037 0.00 0.00 39.49 3.91
2912 5058 7.615365 TCCTATTCATGTAGAACAAAAAGGCAT 59.385 33.333 0.00 0.00 39.49 4.40
2913 5059 6.945435 TCCTATTCATGTAGAACAAAAAGGCA 59.055 34.615 0.00 0.00 39.49 4.75
2915 5061 8.567285 AGTCCTATTCATGTAGAACAAAAAGG 57.433 34.615 0.00 0.00 39.49 3.11
2935 5081 8.367660 TGTCAACTATCTGAGAATAAAGTCCT 57.632 34.615 0.00 0.00 0.00 3.85
2967 5113 9.613428 ACGATATGTCAATTATCTTTCCTTCAA 57.387 29.630 0.00 0.00 0.00 2.69
2968 5114 9.613428 AACGATATGTCAATTATCTTTCCTTCA 57.387 29.630 0.00 0.00 0.00 3.02
3004 5150 9.492973 CCCTGACTTTGTTTTTCAATTATTCAT 57.507 29.630 0.00 0.00 35.84 2.57
3005 5151 8.700051 TCCCTGACTTTGTTTTTCAATTATTCA 58.300 29.630 0.00 0.00 35.84 2.57
3006 5152 9.710900 ATCCCTGACTTTGTTTTTCAATTATTC 57.289 29.630 0.00 0.00 35.84 1.75
3007 5153 9.710900 GATCCCTGACTTTGTTTTTCAATTATT 57.289 29.630 0.00 0.00 35.84 1.40
3008 5154 8.028938 CGATCCCTGACTTTGTTTTTCAATTAT 58.971 33.333 0.00 0.00 35.84 1.28
3009 5155 7.229707 TCGATCCCTGACTTTGTTTTTCAATTA 59.770 33.333 0.00 0.00 35.84 1.40
3010 5156 6.040391 TCGATCCCTGACTTTGTTTTTCAATT 59.960 34.615 0.00 0.00 35.84 2.32
3011 5157 5.534654 TCGATCCCTGACTTTGTTTTTCAAT 59.465 36.000 0.00 0.00 35.84 2.57
3012 5158 4.884744 TCGATCCCTGACTTTGTTTTTCAA 59.115 37.500 0.00 0.00 0.00 2.69
3013 5159 4.456535 TCGATCCCTGACTTTGTTTTTCA 58.543 39.130 0.00 0.00 0.00 2.69
3014 5160 4.613850 GCTCGATCCCTGACTTTGTTTTTC 60.614 45.833 0.00 0.00 0.00 2.29
3015 5161 3.253432 GCTCGATCCCTGACTTTGTTTTT 59.747 43.478 0.00 0.00 0.00 1.94
3018 5164 1.625818 AGCTCGATCCCTGACTTTGTT 59.374 47.619 0.00 0.00 0.00 2.83
3019 5165 1.205893 GAGCTCGATCCCTGACTTTGT 59.794 52.381 0.00 0.00 0.00 2.83
3020 5166 1.480137 AGAGCTCGATCCCTGACTTTG 59.520 52.381 8.37 0.00 0.00 2.77
3021 5167 1.754226 GAGAGCTCGATCCCTGACTTT 59.246 52.381 8.37 0.00 0.00 2.66
3023 5169 0.467290 GGAGAGCTCGATCCCTGACT 60.467 60.000 8.37 0.00 0.00 3.41
3024 5170 2.037871 GGAGAGCTCGATCCCTGAC 58.962 63.158 8.37 0.00 0.00 3.51
3025 5171 4.589046 GGAGAGCTCGATCCCTGA 57.411 61.111 8.37 0.00 0.00 3.86
3029 5175 2.403252 TTTTTGGGAGAGCTCGATCC 57.597 50.000 12.58 12.58 34.64 3.36
3033 5179 2.935201 CTCTGATTTTTGGGAGAGCTCG 59.065 50.000 8.37 0.00 0.00 5.03
3034 5180 3.054802 TCCTCTGATTTTTGGGAGAGCTC 60.055 47.826 5.27 5.27 32.17 4.09
3035 5181 2.915604 TCCTCTGATTTTTGGGAGAGCT 59.084 45.455 0.00 0.00 32.17 4.09
3036 5182 3.356529 TCCTCTGATTTTTGGGAGAGC 57.643 47.619 0.00 0.00 32.17 4.09
3037 5183 5.370875 AGATCCTCTGATTTTTGGGAGAG 57.629 43.478 0.00 0.00 33.14 3.20
3038 5184 7.285566 CAATAGATCCTCTGATTTTTGGGAGA 58.714 38.462 0.00 0.00 0.00 3.71
3040 5186 6.068853 ACCAATAGATCCTCTGATTTTTGGGA 60.069 38.462 0.00 0.00 38.06 4.37
3041 5187 6.131961 ACCAATAGATCCTCTGATTTTTGGG 58.868 40.000 0.00 0.00 38.06 4.12
3042 5188 8.930846 ATACCAATAGATCCTCTGATTTTTGG 57.069 34.615 0.00 0.00 38.81 3.28
3053 5199 8.986991 CCAGCTATTCTTATACCAATAGATCCT 58.013 37.037 11.65 1.13 35.41 3.24
3054 5200 7.713073 GCCAGCTATTCTTATACCAATAGATCC 59.287 40.741 11.65 0.14 35.41 3.36
3057 5203 7.798710 AGCCAGCTATTCTTATACCAATAGA 57.201 36.000 11.65 0.00 35.41 1.98
3058 5204 8.972127 TCTAGCCAGCTATTCTTATACCAATAG 58.028 37.037 0.00 5.84 36.18 1.73
3059 5205 8.895141 TCTAGCCAGCTATTCTTATACCAATA 57.105 34.615 0.00 0.00 0.00 1.90
3060 5206 7.580495 GCTCTAGCCAGCTATTCTTATACCAAT 60.580 40.741 0.00 0.00 36.38 3.16
3061 5207 6.295349 GCTCTAGCCAGCTATTCTTATACCAA 60.295 42.308 0.00 0.00 36.38 3.67
3063 5209 5.186021 TGCTCTAGCCAGCTATTCTTATACC 59.814 44.000 0.00 0.00 40.39 2.73
3064 5210 6.274157 TGCTCTAGCCAGCTATTCTTATAC 57.726 41.667 0.00 0.00 40.39 1.47
3067 5213 4.221703 GGATGCTCTAGCCAGCTATTCTTA 59.778 45.833 0.00 0.00 40.39 2.10
3068 5214 3.007831 GGATGCTCTAGCCAGCTATTCTT 59.992 47.826 0.00 0.00 40.39 2.52
3069 5215 2.566724 GGATGCTCTAGCCAGCTATTCT 59.433 50.000 0.00 0.00 40.39 2.40
3072 5218 2.021262 TGGATGCTCTAGCCAGCTAT 57.979 50.000 0.00 0.00 40.67 2.97
3073 5219 3.539338 TGGATGCTCTAGCCAGCTA 57.461 52.632 5.16 0.00 40.67 3.32
3074 5220 4.388465 TGGATGCTCTAGCCAGCT 57.612 55.556 5.16 0.00 40.67 4.24
3078 5224 0.315568 CGGTAGTGGATGCTCTAGCC 59.684 60.000 16.55 10.64 41.18 3.93
3079 5225 1.033574 ACGGTAGTGGATGCTCTAGC 58.966 55.000 13.53 13.53 42.50 3.42
3080 5226 2.783828 CACGGTAGTGGATGCTCTAG 57.216 55.000 0.00 0.00 44.34 2.43
3092 5238 4.740695 GCTATCTAGAAGCAAACACGGTAG 59.259 45.833 16.99 3.97 39.83 3.18
3093 5239 4.158949 TGCTATCTAGAAGCAAACACGGTA 59.841 41.667 20.34 2.26 46.57 4.02
3095 5241 3.521560 TGCTATCTAGAAGCAAACACGG 58.478 45.455 20.34 0.00 46.57 4.94
3104 5250 7.523293 TCCTTCTCTCATTGCTATCTAGAAG 57.477 40.000 0.00 12.67 38.65 2.85
3105 5251 7.904558 TTCCTTCTCTCATTGCTATCTAGAA 57.095 36.000 0.00 0.00 0.00 2.10
3106 5252 7.563188 AGTTTCCTTCTCTCATTGCTATCTAGA 59.437 37.037 0.00 0.00 0.00 2.43
3107 5253 7.725251 AGTTTCCTTCTCTCATTGCTATCTAG 58.275 38.462 0.00 0.00 0.00 2.43
3108 5254 7.667575 AGTTTCCTTCTCTCATTGCTATCTA 57.332 36.000 0.00 0.00 0.00 1.98
3109 5255 6.558488 AGTTTCCTTCTCTCATTGCTATCT 57.442 37.500 0.00 0.00 0.00 1.98
3110 5256 7.622893 AAAGTTTCCTTCTCTCATTGCTATC 57.377 36.000 0.00 0.00 0.00 2.08
3111 5257 7.449704 ACAAAAGTTTCCTTCTCTCATTGCTAT 59.550 33.333 0.00 0.00 0.00 2.97
3112 5258 6.772716 ACAAAAGTTTCCTTCTCTCATTGCTA 59.227 34.615 0.00 0.00 0.00 3.49
3113 5259 5.595952 ACAAAAGTTTCCTTCTCTCATTGCT 59.404 36.000 0.00 0.00 0.00 3.91
3114 5260 5.836347 ACAAAAGTTTCCTTCTCTCATTGC 58.164 37.500 0.00 0.00 0.00 3.56
3115 5261 9.801873 TTTTACAAAAGTTTCCTTCTCTCATTG 57.198 29.630 0.00 0.00 0.00 2.82
3118 5264 8.630037 GGATTTTACAAAAGTTTCCTTCTCTCA 58.370 33.333 0.00 0.00 0.00 3.27
3119 5265 8.630037 TGGATTTTACAAAAGTTTCCTTCTCTC 58.370 33.333 6.96 0.00 29.91 3.20
3120 5266 8.533569 TGGATTTTACAAAAGTTTCCTTCTCT 57.466 30.769 6.96 0.00 29.91 3.10
3121 5267 7.382488 GCTGGATTTTACAAAAGTTTCCTTCTC 59.618 37.037 6.96 0.00 29.91 2.87
3122 5268 7.069950 AGCTGGATTTTACAAAAGTTTCCTTCT 59.930 33.333 0.00 2.85 29.91 2.85
3123 5269 7.210174 AGCTGGATTTTACAAAAGTTTCCTTC 58.790 34.615 0.00 1.25 29.91 3.46
3124 5270 7.124573 AGCTGGATTTTACAAAAGTTTCCTT 57.875 32.000 0.00 0.00 29.91 3.36
3125 5271 6.731292 AGCTGGATTTTACAAAAGTTTCCT 57.269 33.333 0.00 0.00 29.91 3.36
3126 5272 6.983890 TCAAGCTGGATTTTACAAAAGTTTCC 59.016 34.615 0.00 0.54 0.00 3.13
3127 5273 7.920682 TCTCAAGCTGGATTTTACAAAAGTTTC 59.079 33.333 0.00 0.00 0.00 2.78
3128 5274 7.781056 TCTCAAGCTGGATTTTACAAAAGTTT 58.219 30.769 0.00 0.00 0.00 2.66
3129 5275 7.346751 TCTCAAGCTGGATTTTACAAAAGTT 57.653 32.000 0.00 0.00 0.00 2.66
3133 5279 9.859427 CAATATTCTCAAGCTGGATTTTACAAA 57.141 29.630 0.00 0.00 0.00 2.83
3134 5280 7.975616 GCAATATTCTCAAGCTGGATTTTACAA 59.024 33.333 0.00 0.00 0.00 2.41
3135 5281 7.122501 TGCAATATTCTCAAGCTGGATTTTACA 59.877 33.333 0.00 0.00 0.00 2.41
3136 5282 7.433425 GTGCAATATTCTCAAGCTGGATTTTAC 59.567 37.037 0.00 0.00 0.00 2.01
3137 5283 7.340232 AGTGCAATATTCTCAAGCTGGATTTTA 59.660 33.333 0.00 0.00 0.00 1.52
3138 5284 6.154021 AGTGCAATATTCTCAAGCTGGATTTT 59.846 34.615 0.00 0.00 0.00 1.82
3139 5285 5.655532 AGTGCAATATTCTCAAGCTGGATTT 59.344 36.000 0.00 0.00 0.00 2.17
3140 5286 5.198965 AGTGCAATATTCTCAAGCTGGATT 58.801 37.500 0.00 0.00 0.00 3.01
3141 5287 4.789807 AGTGCAATATTCTCAAGCTGGAT 58.210 39.130 0.00 0.00 0.00 3.41
3142 5288 4.194640 GAGTGCAATATTCTCAAGCTGGA 58.805 43.478 0.00 0.00 0.00 3.86
3144 5290 3.002042 CGGAGTGCAATATTCTCAAGCTG 59.998 47.826 3.95 0.00 0.00 4.24
3145 5291 3.201290 CGGAGTGCAATATTCTCAAGCT 58.799 45.455 3.95 0.00 0.00 3.74
3146 5292 2.939103 ACGGAGTGCAATATTCTCAAGC 59.061 45.455 3.95 0.00 42.51 4.01
3163 5309 1.066430 GGAGGTTGCAACTATCACGGA 60.066 52.381 27.64 0.00 0.00 4.69
3164 5310 1.338674 TGGAGGTTGCAACTATCACGG 60.339 52.381 27.64 0.00 0.00 4.94
3165 5311 2.093306 TGGAGGTTGCAACTATCACG 57.907 50.000 27.64 0.00 0.00 4.35
3166 5312 3.057526 GGTTTGGAGGTTGCAACTATCAC 60.058 47.826 27.64 18.13 0.00 3.06
3167 5313 3.153919 GGTTTGGAGGTTGCAACTATCA 58.846 45.455 27.64 19.11 0.00 2.15
3168 5314 3.153919 TGGTTTGGAGGTTGCAACTATC 58.846 45.455 27.64 23.47 0.00 2.08
3171 5317 1.688197 CATGGTTTGGAGGTTGCAACT 59.312 47.619 27.64 14.56 0.00 3.16
3183 5329 2.094675 CAGGAGGCTTACCATGGTTTG 58.905 52.381 25.38 16.89 39.06 2.93
3184 5330 1.992557 TCAGGAGGCTTACCATGGTTT 59.007 47.619 25.38 0.23 39.06 3.27
3185 5331 1.668826 TCAGGAGGCTTACCATGGTT 58.331 50.000 25.38 3.66 39.06 3.67
3186 5332 1.898863 ATCAGGAGGCTTACCATGGT 58.101 50.000 23.55 23.55 39.06 3.55
3187 5333 2.441001 AGAATCAGGAGGCTTACCATGG 59.559 50.000 11.19 11.19 39.06 3.66
3189 5335 3.387962 TCAGAATCAGGAGGCTTACCAT 58.612 45.455 0.00 0.00 39.06 3.55
3190 5336 2.832838 TCAGAATCAGGAGGCTTACCA 58.167 47.619 0.00 0.00 39.06 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.