Multiple sequence alignment - TraesCS5D01G378300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G378300 chr5D 100.000 4253 0 0 1 4253 449984211 449979959 0.000000e+00 7854
1 TraesCS5D01G378300 chr5D 91.863 2765 146 37 659 3365 449941275 449938532 0.000000e+00 3786
2 TraesCS5D01G378300 chr5D 86.591 2103 214 40 566 2628 449936572 449934498 0.000000e+00 2259
3 TraesCS5D01G378300 chr5D 88.097 1277 97 21 663 1927 449883464 449884697 0.000000e+00 1465
4 TraesCS5D01G378300 chr5D 87.631 1237 99 28 1916 3135 449886406 449887605 0.000000e+00 1387
5 TraesCS5D01G378300 chr5D 86.331 417 34 9 3831 4239 213167874 213168275 2.350000e-117 433
6 TraesCS5D01G378300 chr5D 89.320 103 10 1 3167 3268 449887607 449887709 1.240000e-25 128
7 TraesCS5D01G378300 chr5A 89.389 2733 186 48 659 3342 569225020 569222343 0.000000e+00 3345
8 TraesCS5D01G378300 chr5A 89.729 2473 202 27 905 3357 569151606 569154046 0.000000e+00 3112
9 TraesCS5D01G378300 chr5A 87.641 2662 224 39 776 3408 569184101 569181516 0.000000e+00 2996
10 TraesCS5D01G378300 chr5A 85.087 2890 275 74 566 3376 569220210 569217398 0.000000e+00 2806
11 TraesCS5D01G378300 chr5A 93.151 146 7 1 563 708 569184285 569184143 1.200000e-50 211
12 TraesCS5D01G378300 chr5A 86.294 197 20 2 566 762 569179656 569179467 1.550000e-49 207
13 TraesCS5D01G378300 chr5A 84.821 112 13 1 791 902 569151399 569151506 4.500000e-20 110
14 TraesCS5D01G378300 chr5B 84.431 2884 293 80 566 3376 549949575 549946775 0.000000e+00 2695
15 TraesCS5D01G378300 chr5B 92.674 1447 53 9 1946 3375 549953067 549951657 0.000000e+00 2036
16 TraesCS5D01G378300 chr5B 89.794 1362 99 25 614 1948 549954528 549953180 0.000000e+00 1709
17 TraesCS5D01G378300 chr5B 92.670 1105 63 10 910 1999 549711102 549712203 0.000000e+00 1576
18 TraesCS5D01G378300 chr5B 84.167 1219 105 43 2164 3357 549712195 549713350 0.000000e+00 1101
19 TraesCS5D01G378300 chr2D 86.131 1817 185 30 789 2554 347807149 347808949 0.000000e+00 1897
20 TraesCS5D01G378300 chr2D 80.684 1170 178 30 931 2091 347791819 347792949 0.000000e+00 865
21 TraesCS5D01G378300 chr2D 82.496 697 82 20 2687 3376 347809030 347809693 3.690000e-160 575
22 TraesCS5D01G378300 chr2D 87.037 378 33 5 3868 4242 455885606 455885242 3.060000e-111 412
23 TraesCS5D01G378300 chr2D 77.219 338 49 18 2751 3080 347793533 347793850 5.650000e-39 172
24 TraesCS5D01G378300 chr3D 85.363 854 85 21 3408 4239 342141436 342142271 0.000000e+00 848
25 TraesCS5D01G378300 chr3D 80.974 862 79 29 3408 4238 381772300 381773107 4.700000e-169 604
26 TraesCS5D01G378300 chr3D 84.156 486 53 11 3408 3874 514795524 514795044 2.330000e-122 449
27 TraesCS5D01G378300 chr3D 81.690 213 34 2 3408 3616 313453694 313453483 5.650000e-39 172
28 TraesCS5D01G378300 chr6D 85.018 841 85 16 3419 4239 301659680 301658861 0.000000e+00 817
29 TraesCS5D01G378300 chr7A 84.670 848 90 21 3408 4239 289476097 289476920 0.000000e+00 809
30 TraesCS5D01G378300 chr7A 84.028 864 85 32 3408 4239 135051217 135050375 0.000000e+00 782
31 TraesCS5D01G378300 chr7A 84.567 797 74 23 3408 4189 217402425 217401663 0.000000e+00 745
32 TraesCS5D01G378300 chr7A 83.141 866 93 23 3408 4239 289026490 289025644 0.000000e+00 741
33 TraesCS5D01G378300 chr7A 82.063 853 96 29 3408 4239 401556145 401556961 0.000000e+00 675
34 TraesCS5D01G378300 chr3A 83.647 850 100 18 3408 4239 452494461 452495289 0.000000e+00 763
35 TraesCS5D01G378300 chr3A 85.333 375 38 9 3868 4239 609555031 609555391 5.190000e-99 372
36 TraesCS5D01G378300 chr2A 82.816 838 104 13 3420 4239 435572876 435572061 0.000000e+00 713
37 TraesCS5D01G378300 chr2A 82.447 752 88 25 2642 3376 461416762 461417486 6.040000e-173 617
38 TraesCS5D01G378300 chr2A 81.860 215 26 7 3408 3616 315138233 315138440 7.310000e-38 169
39 TraesCS5D01G378300 chr2A 76.036 338 53 17 2751 3080 461391037 461391354 2.650000e-32 150
40 TraesCS5D01G378300 chr6A 82.918 843 92 23 3413 4236 471887425 471888234 0.000000e+00 712
41 TraesCS5D01G378300 chr4D 82.503 863 89 22 3408 4239 223560544 223559713 0.000000e+00 701
42 TraesCS5D01G378300 chr4D 84.196 734 70 22 3408 4115 82127313 82128026 0.000000e+00 671
43 TraesCS5D01G378300 chr4A 82.353 833 102 22 3408 4224 569498043 569498846 0.000000e+00 682
44 TraesCS5D01G378300 chr1B 86.297 613 57 13 3408 4001 342657338 342656734 3.590000e-180 641
45 TraesCS5D01G378300 chr1B 86.280 379 34 7 3868 4242 555208257 555208621 3.080000e-106 396
46 TraesCS5D01G378300 chr4B 83.757 708 79 21 3536 4239 91056824 91057499 4.640000e-179 638
47 TraesCS5D01G378300 chr4B 83.585 597 65 18 3655 4239 451722239 451722814 2.910000e-146 529
48 TraesCS5D01G378300 chr2B 82.329 747 89 21 2642 3376 413063978 413064693 3.640000e-170 608
49 TraesCS5D01G378300 chr2B 77.515 338 48 17 2751 3080 412991842 412992159 1.220000e-40 178
50 TraesCS5D01G378300 chr2B 78.673 211 19 16 251 452 413061628 413061821 2.690000e-22 117
51 TraesCS5D01G378300 chr7D 85.600 375 37 6 3868 4239 204955578 204955938 1.120000e-100 377
52 TraesCS5D01G378300 chr7D 85.027 374 24 12 3868 4239 171648137 171648480 6.770000e-93 351


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G378300 chr5D 449979959 449984211 4252 True 7854.000000 7854 100.000000 1 4253 1 chr5D.!!$R1 4252
1 TraesCS5D01G378300 chr5D 449934498 449941275 6777 True 3022.500000 3786 89.227000 566 3365 2 chr5D.!!$R2 2799
2 TraesCS5D01G378300 chr5D 449883464 449887709 4245 False 993.333333 1465 88.349333 663 3268 3 chr5D.!!$F2 2605
3 TraesCS5D01G378300 chr5A 569217398 569225020 7622 True 3075.500000 3345 87.238000 566 3376 2 chr5A.!!$R2 2810
4 TraesCS5D01G378300 chr5A 569151399 569154046 2647 False 1611.000000 3112 87.275000 791 3357 2 chr5A.!!$F1 2566
5 TraesCS5D01G378300 chr5A 569179467 569184285 4818 True 1138.000000 2996 89.028667 563 3408 3 chr5A.!!$R1 2845
6 TraesCS5D01G378300 chr5B 549946775 549954528 7753 True 2146.666667 2695 88.966333 566 3376 3 chr5B.!!$R1 2810
7 TraesCS5D01G378300 chr5B 549711102 549713350 2248 False 1338.500000 1576 88.418500 910 3357 2 chr5B.!!$F1 2447
8 TraesCS5D01G378300 chr2D 347807149 347809693 2544 False 1236.000000 1897 84.313500 789 3376 2 chr2D.!!$F2 2587
9 TraesCS5D01G378300 chr2D 347791819 347793850 2031 False 518.500000 865 78.951500 931 3080 2 chr2D.!!$F1 2149
10 TraesCS5D01G378300 chr3D 342141436 342142271 835 False 848.000000 848 85.363000 3408 4239 1 chr3D.!!$F1 831
11 TraesCS5D01G378300 chr3D 381772300 381773107 807 False 604.000000 604 80.974000 3408 4238 1 chr3D.!!$F2 830
12 TraesCS5D01G378300 chr6D 301658861 301659680 819 True 817.000000 817 85.018000 3419 4239 1 chr6D.!!$R1 820
13 TraesCS5D01G378300 chr7A 289476097 289476920 823 False 809.000000 809 84.670000 3408 4239 1 chr7A.!!$F1 831
14 TraesCS5D01G378300 chr7A 135050375 135051217 842 True 782.000000 782 84.028000 3408 4239 1 chr7A.!!$R1 831
15 TraesCS5D01G378300 chr7A 217401663 217402425 762 True 745.000000 745 84.567000 3408 4189 1 chr7A.!!$R2 781
16 TraesCS5D01G378300 chr7A 289025644 289026490 846 True 741.000000 741 83.141000 3408 4239 1 chr7A.!!$R3 831
17 TraesCS5D01G378300 chr7A 401556145 401556961 816 False 675.000000 675 82.063000 3408 4239 1 chr7A.!!$F2 831
18 TraesCS5D01G378300 chr3A 452494461 452495289 828 False 763.000000 763 83.647000 3408 4239 1 chr3A.!!$F1 831
19 TraesCS5D01G378300 chr2A 435572061 435572876 815 True 713.000000 713 82.816000 3420 4239 1 chr2A.!!$R1 819
20 TraesCS5D01G378300 chr2A 461416762 461417486 724 False 617.000000 617 82.447000 2642 3376 1 chr2A.!!$F3 734
21 TraesCS5D01G378300 chr6A 471887425 471888234 809 False 712.000000 712 82.918000 3413 4236 1 chr6A.!!$F1 823
22 TraesCS5D01G378300 chr4D 223559713 223560544 831 True 701.000000 701 82.503000 3408 4239 1 chr4D.!!$R1 831
23 TraesCS5D01G378300 chr4D 82127313 82128026 713 False 671.000000 671 84.196000 3408 4115 1 chr4D.!!$F1 707
24 TraesCS5D01G378300 chr4A 569498043 569498846 803 False 682.000000 682 82.353000 3408 4224 1 chr4A.!!$F1 816
25 TraesCS5D01G378300 chr1B 342656734 342657338 604 True 641.000000 641 86.297000 3408 4001 1 chr1B.!!$R1 593
26 TraesCS5D01G378300 chr4B 91056824 91057499 675 False 638.000000 638 83.757000 3536 4239 1 chr4B.!!$F1 703
27 TraesCS5D01G378300 chr4B 451722239 451722814 575 False 529.000000 529 83.585000 3655 4239 1 chr4B.!!$F2 584
28 TraesCS5D01G378300 chr2B 413061628 413064693 3065 False 362.500000 608 80.501000 251 3376 2 chr2B.!!$F2 3125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.032615 TGTTCTTGCCCACACCCTTT 60.033 50.0 0.00 0.0 0.00 3.11 F
227 228 0.034198 TCTGTGCGTGGAATTCCGAA 59.966 50.0 19.57 0.0 39.43 4.30 F
2014 4113 0.115349 ACAGCCTAGAGTGGTGGTCT 59.885 55.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 4158 0.108585 ACAACACCGATGCTTCCAGT 59.891 50.000 0.0 0.0 0.00 4.00 R
2129 4231 3.085952 TCCACATTTCCCATCAGAACC 57.914 47.619 0.0 0.0 0.00 3.62 R
3987 18253 1.055849 TGTGCATCCTGGTACACTGT 58.944 50.000 14.3 0.0 34.14 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.543884 GTATTGGCCCAAGACGACA 57.456 52.632 5.34 0.00 0.00 4.35
22 23 1.084289 GTATTGGCCCAAGACGACAC 58.916 55.000 5.34 0.00 0.00 3.67
23 24 0.035820 TATTGGCCCAAGACGACACC 60.036 55.000 1.16 0.00 0.00 4.16
25 26 2.668550 GGCCCAAGACGACACCAC 60.669 66.667 0.00 0.00 0.00 4.16
27 28 1.668151 GCCCAAGACGACACCACTC 60.668 63.158 0.00 0.00 0.00 3.51
28 29 1.004918 CCCAAGACGACACCACTCC 60.005 63.158 0.00 0.00 0.00 3.85
29 30 1.745890 CCAAGACGACACCACTCCA 59.254 57.895 0.00 0.00 0.00 3.86
30 31 0.321671 CCAAGACGACACCACTCCAT 59.678 55.000 0.00 0.00 0.00 3.41
33 34 1.561643 AGACGACACCACTCCATCAT 58.438 50.000 0.00 0.00 0.00 2.45
34 35 1.478510 AGACGACACCACTCCATCATC 59.521 52.381 0.00 0.00 0.00 2.92
36 37 0.179073 CGACACCACTCCATCATCCC 60.179 60.000 0.00 0.00 0.00 3.85
37 38 0.181350 GACACCACTCCATCATCCCC 59.819 60.000 0.00 0.00 0.00 4.81
38 39 1.146930 CACCACTCCATCATCCCCG 59.853 63.158 0.00 0.00 0.00 5.73
41 42 0.681733 CCACTCCATCATCCCCGTAG 59.318 60.000 0.00 0.00 0.00 3.51
42 43 0.034059 CACTCCATCATCCCCGTAGC 59.966 60.000 0.00 0.00 0.00 3.58
44 45 2.159819 CTCCATCATCCCCGTAGCCG 62.160 65.000 0.00 0.00 0.00 5.52
55 56 3.272334 GTAGCCGGCTTCCGCATG 61.272 66.667 37.74 0.00 46.86 4.06
59 60 3.803082 CCGGCTTCCGCATGTGTG 61.803 66.667 5.38 0.00 46.86 3.82
90 91 4.016706 CTCGGCCGGGGACAACTT 62.017 66.667 27.83 0.00 0.00 2.66
91 92 4.323477 TCGGCCGGGGACAACTTG 62.323 66.667 27.83 0.00 0.00 3.16
94 95 2.671963 GCCGGGGACAACTTGGTC 60.672 66.667 2.18 0.00 37.06 4.02
95 96 2.358247 CCGGGGACAACTTGGTCG 60.358 66.667 0.00 0.00 38.70 4.79
96 97 2.358247 CGGGGACAACTTGGTCGG 60.358 66.667 0.00 0.00 38.70 4.79
97 98 2.033602 GGGGACAACTTGGTCGGG 59.966 66.667 0.00 0.00 38.70 5.14
98 99 2.671963 GGGACAACTTGGTCGGGC 60.672 66.667 0.00 0.00 38.70 6.13
99 100 2.671963 GGACAACTTGGTCGGGCC 60.672 66.667 0.00 0.00 38.70 5.80
100 101 2.430367 GACAACTTGGTCGGGCCT 59.570 61.111 0.84 0.00 38.35 5.19
101 102 1.966451 GACAACTTGGTCGGGCCTG 60.966 63.158 4.71 4.71 38.35 4.85
102 103 3.365265 CAACTTGGTCGGGCCTGC 61.365 66.667 6.73 1.54 38.35 4.85
126 127 3.864186 GGGGCCGCCGTTATGGTA 61.864 66.667 9.05 0.00 41.21 3.25
127 128 2.589724 GGGCCGCCGTTATGGTAC 60.590 66.667 2.55 0.00 41.21 3.34
128 129 2.502577 GGCCGCCGTTATGGTACT 59.497 61.111 0.00 0.00 41.21 2.73
129 130 1.885850 GGCCGCCGTTATGGTACTG 60.886 63.158 0.00 0.00 41.21 2.74
130 131 1.153509 GCCGCCGTTATGGTACTGT 60.154 57.895 0.00 0.00 41.21 3.55
131 132 0.741927 GCCGCCGTTATGGTACTGTT 60.742 55.000 0.00 0.00 41.21 3.16
132 133 1.283736 CCGCCGTTATGGTACTGTTC 58.716 55.000 0.00 0.00 41.21 3.18
133 134 1.134907 CCGCCGTTATGGTACTGTTCT 60.135 52.381 0.00 0.00 41.21 3.01
134 135 2.613691 CGCCGTTATGGTACTGTTCTT 58.386 47.619 0.00 0.00 41.21 2.52
135 136 2.347452 CGCCGTTATGGTACTGTTCTTG 59.653 50.000 0.00 0.00 41.21 3.02
136 137 2.095372 GCCGTTATGGTACTGTTCTTGC 59.905 50.000 0.00 0.00 41.21 4.01
137 138 2.676342 CCGTTATGGTACTGTTCTTGCC 59.324 50.000 0.00 0.00 0.00 4.52
138 139 2.676342 CGTTATGGTACTGTTCTTGCCC 59.324 50.000 0.00 0.00 0.00 5.36
139 140 3.681593 GTTATGGTACTGTTCTTGCCCA 58.318 45.455 0.00 0.00 0.00 5.36
140 141 2.200373 ATGGTACTGTTCTTGCCCAC 57.800 50.000 0.00 0.00 0.00 4.61
141 142 0.840617 TGGTACTGTTCTTGCCCACA 59.159 50.000 0.00 0.00 0.00 4.17
142 143 1.235724 GGTACTGTTCTTGCCCACAC 58.764 55.000 0.00 0.00 0.00 3.82
143 144 1.235724 GTACTGTTCTTGCCCACACC 58.764 55.000 0.00 0.00 0.00 4.16
144 145 0.109723 TACTGTTCTTGCCCACACCC 59.890 55.000 0.00 0.00 0.00 4.61
145 146 1.151450 CTGTTCTTGCCCACACCCT 59.849 57.895 0.00 0.00 0.00 4.34
146 147 0.468029 CTGTTCTTGCCCACACCCTT 60.468 55.000 0.00 0.00 0.00 3.95
147 148 0.032615 TGTTCTTGCCCACACCCTTT 60.033 50.000 0.00 0.00 0.00 3.11
148 149 0.389025 GTTCTTGCCCACACCCTTTG 59.611 55.000 0.00 0.00 0.00 2.77
149 150 1.398958 TTCTTGCCCACACCCTTTGC 61.399 55.000 0.00 0.00 0.00 3.68
150 151 1.833934 CTTGCCCACACCCTTTGCT 60.834 57.895 0.00 0.00 0.00 3.91
151 152 1.809567 CTTGCCCACACCCTTTGCTC 61.810 60.000 0.00 0.00 0.00 4.26
152 153 2.203480 GCCCACACCCTTTGCTCA 60.203 61.111 0.00 0.00 0.00 4.26
153 154 1.607467 GCCCACACCCTTTGCTCAT 60.607 57.895 0.00 0.00 0.00 2.90
154 155 1.598701 GCCCACACCCTTTGCTCATC 61.599 60.000 0.00 0.00 0.00 2.92
155 156 0.038744 CCCACACCCTTTGCTCATCT 59.961 55.000 0.00 0.00 0.00 2.90
156 157 1.548582 CCCACACCCTTTGCTCATCTT 60.549 52.381 0.00 0.00 0.00 2.40
157 158 2.242043 CCACACCCTTTGCTCATCTTT 58.758 47.619 0.00 0.00 0.00 2.52
158 159 3.420893 CCACACCCTTTGCTCATCTTTA 58.579 45.455 0.00 0.00 0.00 1.85
159 160 3.191371 CCACACCCTTTGCTCATCTTTAC 59.809 47.826 0.00 0.00 0.00 2.01
160 161 3.074412 ACACCCTTTGCTCATCTTTACG 58.926 45.455 0.00 0.00 0.00 3.18
161 162 2.084546 ACCCTTTGCTCATCTTTACGC 58.915 47.619 0.00 0.00 0.00 4.42
162 163 1.401905 CCCTTTGCTCATCTTTACGCC 59.598 52.381 0.00 0.00 0.00 5.68
163 164 1.062587 CCTTTGCTCATCTTTACGCCG 59.937 52.381 0.00 0.00 0.00 6.46
164 165 0.446222 TTTGCTCATCTTTACGCCGC 59.554 50.000 0.00 0.00 0.00 6.53
165 166 0.672091 TTGCTCATCTTTACGCCGCA 60.672 50.000 0.00 0.00 0.00 5.69
166 167 0.461870 TGCTCATCTTTACGCCGCAT 60.462 50.000 0.00 0.00 0.00 4.73
167 168 0.233332 GCTCATCTTTACGCCGCATC 59.767 55.000 0.00 0.00 0.00 3.91
168 169 0.504384 CTCATCTTTACGCCGCATCG 59.496 55.000 0.00 0.00 0.00 3.84
169 170 1.083401 CATCTTTACGCCGCATCGC 60.083 57.895 0.00 0.00 0.00 4.58
170 171 1.520564 ATCTTTACGCCGCATCGCA 60.521 52.632 0.00 0.00 0.00 5.10
171 172 1.490693 ATCTTTACGCCGCATCGCAG 61.491 55.000 0.00 0.00 0.00 5.18
172 173 2.125872 TTTACGCCGCATCGCAGA 60.126 55.556 0.00 0.00 45.75 4.26
173 174 2.082437 CTTTACGCCGCATCGCAGAG 62.082 60.000 0.00 0.00 43.63 3.35
174 175 4.569023 TACGCCGCATCGCAGAGG 62.569 66.667 0.00 0.00 43.63 3.69
177 178 3.127533 GCCGCATCGCAGAGGTTT 61.128 61.111 0.00 0.00 43.63 3.27
178 179 2.787249 CCGCATCGCAGAGGTTTG 59.213 61.111 0.00 0.00 43.63 2.93
179 180 2.099062 CGCATCGCAGAGGTTTGC 59.901 61.111 0.00 0.00 43.63 3.68
180 181 2.486966 GCATCGCAGAGGTTTGCC 59.513 61.111 0.00 0.00 43.63 4.52
181 182 2.334946 GCATCGCAGAGGTTTGCCA 61.335 57.895 0.00 0.00 43.63 4.92
182 183 1.660560 GCATCGCAGAGGTTTGCCAT 61.661 55.000 0.00 0.00 43.63 4.40
183 184 1.667236 CATCGCAGAGGTTTGCCATA 58.333 50.000 0.00 0.00 43.63 2.74
184 185 2.224606 CATCGCAGAGGTTTGCCATAT 58.775 47.619 0.00 0.00 43.63 1.78
185 186 2.418368 TCGCAGAGGTTTGCCATATT 57.582 45.000 0.00 0.00 41.01 1.28
186 187 2.722094 TCGCAGAGGTTTGCCATATTT 58.278 42.857 0.00 0.00 41.01 1.40
187 188 3.088532 TCGCAGAGGTTTGCCATATTTT 58.911 40.909 0.00 0.00 41.01 1.82
188 189 3.509575 TCGCAGAGGTTTGCCATATTTTT 59.490 39.130 0.00 0.00 41.01 1.94
210 211 6.861065 TTTTGTTTCTTCAGCGTCTTATCT 57.139 33.333 0.00 0.00 0.00 1.98
211 212 5.845985 TTGTTTCTTCAGCGTCTTATCTG 57.154 39.130 0.00 0.00 0.00 2.90
212 213 4.883083 TGTTTCTTCAGCGTCTTATCTGT 58.117 39.130 0.00 0.00 0.00 3.41
213 214 4.686091 TGTTTCTTCAGCGTCTTATCTGTG 59.314 41.667 0.00 0.00 0.00 3.66
214 215 2.881074 TCTTCAGCGTCTTATCTGTGC 58.119 47.619 0.00 0.00 0.00 4.57
215 216 1.585668 CTTCAGCGTCTTATCTGTGCG 59.414 52.381 0.00 0.00 0.00 5.34
216 217 0.526211 TCAGCGTCTTATCTGTGCGT 59.474 50.000 0.00 0.00 0.00 5.24
217 218 0.642291 CAGCGTCTTATCTGTGCGTG 59.358 55.000 0.00 0.00 0.00 5.34
218 219 0.458543 AGCGTCTTATCTGTGCGTGG 60.459 55.000 0.00 0.00 0.00 4.94
219 220 0.457853 GCGTCTTATCTGTGCGTGGA 60.458 55.000 0.00 0.00 0.00 4.02
220 221 1.990799 CGTCTTATCTGTGCGTGGAA 58.009 50.000 0.00 0.00 0.00 3.53
221 222 2.540515 CGTCTTATCTGTGCGTGGAAT 58.459 47.619 0.00 0.00 0.00 3.01
222 223 2.930040 CGTCTTATCTGTGCGTGGAATT 59.070 45.455 0.00 0.00 0.00 2.17
223 224 3.000322 CGTCTTATCTGTGCGTGGAATTC 60.000 47.826 0.00 0.00 0.00 2.17
224 225 3.309954 GTCTTATCTGTGCGTGGAATTCC 59.690 47.826 18.17 18.17 0.00 3.01
225 226 1.934589 TATCTGTGCGTGGAATTCCG 58.065 50.000 19.57 9.68 39.43 4.30
226 227 0.249120 ATCTGTGCGTGGAATTCCGA 59.751 50.000 19.57 9.02 39.43 4.55
227 228 0.034198 TCTGTGCGTGGAATTCCGAA 59.966 50.000 19.57 0.00 39.43 4.30
228 229 0.165944 CTGTGCGTGGAATTCCGAAC 59.834 55.000 19.57 13.24 39.43 3.95
229 230 0.250124 TGTGCGTGGAATTCCGAACT 60.250 50.000 19.57 0.00 39.43 3.01
230 231 0.442699 GTGCGTGGAATTCCGAACTC 59.557 55.000 19.57 8.77 39.43 3.01
231 232 0.672401 TGCGTGGAATTCCGAACTCC 60.672 55.000 19.57 1.45 39.43 3.85
232 233 0.672401 GCGTGGAATTCCGAACTCCA 60.672 55.000 19.57 7.23 39.43 3.86
233 234 2.012051 GCGTGGAATTCCGAACTCCAT 61.012 52.381 19.57 0.00 41.21 3.41
234 235 2.356135 CGTGGAATTCCGAACTCCATT 58.644 47.619 19.57 0.00 41.21 3.16
235 236 2.747446 CGTGGAATTCCGAACTCCATTT 59.253 45.455 19.57 0.00 41.21 2.32
236 237 3.426159 CGTGGAATTCCGAACTCCATTTG 60.426 47.826 19.57 4.69 41.21 2.32
237 238 3.506067 GTGGAATTCCGAACTCCATTTGT 59.494 43.478 19.57 0.00 41.21 2.83
238 239 4.022329 GTGGAATTCCGAACTCCATTTGTT 60.022 41.667 19.57 0.00 41.21 2.83
239 240 4.586841 TGGAATTCCGAACTCCATTTGTTT 59.413 37.500 19.57 0.00 39.43 2.83
240 241 5.161358 GGAATTCCGAACTCCATTTGTTTC 58.839 41.667 9.17 0.00 0.00 2.78
241 242 4.783764 ATTCCGAACTCCATTTGTTTCC 57.216 40.909 0.00 0.00 0.00 3.13
242 243 3.502123 TCCGAACTCCATTTGTTTCCT 57.498 42.857 0.00 0.00 0.00 3.36
243 244 3.408634 TCCGAACTCCATTTGTTTCCTC 58.591 45.455 0.00 0.00 0.00 3.71
244 245 3.146066 CCGAACTCCATTTGTTTCCTCA 58.854 45.455 0.00 0.00 0.00 3.86
245 246 3.058224 CCGAACTCCATTTGTTTCCTCAC 60.058 47.826 0.00 0.00 0.00 3.51
246 247 3.563808 CGAACTCCATTTGTTTCCTCACA 59.436 43.478 0.00 0.00 0.00 3.58
247 248 4.036262 CGAACTCCATTTGTTTCCTCACAA 59.964 41.667 0.00 0.00 34.76 3.33
249 250 5.262588 ACTCCATTTGTTTCCTCACAAAC 57.737 39.130 1.23 0.00 46.76 2.93
257 258 5.514274 TGTTTCCTCACAAACTCCAAATC 57.486 39.130 0.00 0.00 37.20 2.17
258 259 4.340950 TGTTTCCTCACAAACTCCAAATCC 59.659 41.667 0.00 0.00 37.20 3.01
271 272 0.247185 CAAATCCGCTGTTGCCCATT 59.753 50.000 0.00 0.00 35.36 3.16
279 280 1.135721 GCTGTTGCCCATTCCTGATTC 59.864 52.381 0.00 0.00 0.00 2.52
282 283 4.209538 CTGTTGCCCATTCCTGATTCATA 58.790 43.478 0.00 0.00 0.00 2.15
283 284 4.209538 TGTTGCCCATTCCTGATTCATAG 58.790 43.478 0.00 0.00 0.00 2.23
284 285 2.867624 TGCCCATTCCTGATTCATAGC 58.132 47.619 0.00 0.00 0.00 2.97
285 286 2.175284 TGCCCATTCCTGATTCATAGCA 59.825 45.455 0.00 0.00 0.00 3.49
286 287 2.818432 GCCCATTCCTGATTCATAGCAG 59.182 50.000 0.00 0.00 37.53 4.24
293 294 6.748333 TTCCTGATTCATAGCAGAAAACAG 57.252 37.500 0.00 12.41 40.22 3.16
302 303 1.801178 AGCAGAAAACAGCGAGCTTAC 59.199 47.619 0.00 0.00 35.48 2.34
304 305 1.126846 CAGAAAACAGCGAGCTTACGG 59.873 52.381 0.00 0.00 0.00 4.02
310 311 2.122167 AGCGAGCTTACGGGAGAGG 61.122 63.158 0.00 0.00 0.00 3.69
336 337 2.576615 GTCAGCAGAAAACCTGTTCCT 58.423 47.619 0.00 0.00 44.71 3.36
337 338 2.550180 GTCAGCAGAAAACCTGTTCCTC 59.450 50.000 0.00 0.00 44.71 3.71
338 339 2.172505 TCAGCAGAAAACCTGTTCCTCA 59.827 45.455 0.00 0.00 44.71 3.86
339 340 2.291741 CAGCAGAAAACCTGTTCCTCAC 59.708 50.000 0.00 0.00 44.71 3.51
340 341 2.092429 AGCAGAAAACCTGTTCCTCACA 60.092 45.455 0.00 0.00 44.71 3.58
372 373 4.226427 TCAGGAACCCATTCTGAATCTG 57.774 45.455 0.00 4.31 34.98 2.90
373 374 3.845992 TCAGGAACCCATTCTGAATCTGA 59.154 43.478 11.13 11.13 34.98 3.27
374 375 4.289410 TCAGGAACCCATTCTGAATCTGAA 59.711 41.667 12.22 5.07 34.98 3.02
375 376 5.044624 TCAGGAACCCATTCTGAATCTGAAT 60.045 40.000 9.18 9.18 34.98 2.57
376 377 5.298777 CAGGAACCCATTCTGAATCTGAATC 59.701 44.000 11.63 2.94 34.98 2.52
377 378 5.193325 AGGAACCCATTCTGAATCTGAATCT 59.807 40.000 11.63 3.77 34.98 2.40
378 379 5.530543 GGAACCCATTCTGAATCTGAATCTC 59.469 44.000 11.63 7.11 34.98 2.75
379 380 5.046288 ACCCATTCTGAATCTGAATCTCC 57.954 43.478 11.63 0.00 31.42 3.71
393 394 9.566432 AATCTGAATCTCCTATGAATAAACCAC 57.434 33.333 0.00 0.00 0.00 4.16
397 398 3.139077 CTCCTATGAATAAACCACGGGC 58.861 50.000 0.00 0.00 0.00 6.13
413 418 3.131577 CACGGGCTGGTTAACTGATACTA 59.868 47.826 5.42 0.00 0.00 1.82
414 419 3.131755 ACGGGCTGGTTAACTGATACTAC 59.868 47.826 5.42 0.00 0.00 2.73
415 420 3.492137 CGGGCTGGTTAACTGATACTACC 60.492 52.174 5.42 0.00 0.00 3.18
416 421 3.710165 GGGCTGGTTAACTGATACTACCT 59.290 47.826 5.42 0.00 0.00 3.08
417 422 4.163649 GGGCTGGTTAACTGATACTACCTT 59.836 45.833 5.42 0.00 0.00 3.50
420 425 6.408206 GGCTGGTTAACTGATACTACCTTCAT 60.408 42.308 5.42 0.00 0.00 2.57
421 426 6.480320 GCTGGTTAACTGATACTACCTTCATG 59.520 42.308 5.42 0.00 0.00 3.07
422 427 7.632898 GCTGGTTAACTGATACTACCTTCATGA 60.633 40.741 5.42 0.00 0.00 3.07
425 430 7.707035 GGTTAACTGATACTACCTTCATGACAG 59.293 40.741 5.42 0.00 0.00 3.51
441 449 6.888105 TCATGACAGTGCATCTTAGGAAATA 58.112 36.000 0.00 0.00 0.00 1.40
442 450 7.337938 TCATGACAGTGCATCTTAGGAAATAA 58.662 34.615 0.00 0.00 0.00 1.40
443 451 7.994911 TCATGACAGTGCATCTTAGGAAATAAT 59.005 33.333 0.00 0.00 0.00 1.28
461 469 9.862149 GGAAATAATCCCCTTTTTATAGTCAGA 57.138 33.333 0.00 0.00 43.00 3.27
478 514 3.786576 GTCAGAAGATACGACACATGACG 59.213 47.826 0.00 4.93 38.99 4.35
479 515 3.687698 TCAGAAGATACGACACATGACGA 59.312 43.478 10.57 0.00 37.02 4.20
480 516 3.786576 CAGAAGATACGACACATGACGAC 59.213 47.826 10.57 2.52 37.02 4.34
484 520 0.867086 TACGACACATGACGACGACA 59.133 50.000 10.57 0.88 37.02 4.35
485 521 0.385598 ACGACACATGACGACGACAG 60.386 55.000 10.57 0.00 37.02 3.51
488 524 2.126463 ACATGACGACGACAGCGG 60.126 61.111 0.00 0.00 43.17 5.52
489 525 3.545481 CATGACGACGACAGCGGC 61.545 66.667 0.00 0.00 43.80 6.53
517 555 1.776034 GCTCCGGCCGTGATTGATTC 61.776 60.000 26.12 4.84 0.00 2.52
518 556 1.490693 CTCCGGCCGTGATTGATTCG 61.491 60.000 26.12 4.17 0.00 3.34
519 557 1.520564 CCGGCCGTGATTGATTCGA 60.521 57.895 26.12 0.00 0.00 3.71
520 558 0.880278 CCGGCCGTGATTGATTCGAT 60.880 55.000 26.12 0.00 0.00 3.59
521 559 0.937304 CGGCCGTGATTGATTCGATT 59.063 50.000 19.50 0.00 0.00 3.34
525 563 2.599848 GCCGTGATTGATTCGATTTCGG 60.600 50.000 18.29 18.29 40.29 4.30
528 566 4.085055 CCGTGATTGATTCGATTTCGGTAG 60.085 45.833 16.08 0.72 40.29 3.18
538 576 5.048153 TCGATTTCGGTAGCTATGAGATG 57.952 43.478 0.00 0.00 40.29 2.90
540 578 5.092105 CGATTTCGGTAGCTATGAGATGAG 58.908 45.833 0.00 0.00 35.37 2.90
541 579 5.106515 CGATTTCGGTAGCTATGAGATGAGA 60.107 44.000 0.00 0.00 35.37 3.27
542 580 6.404184 CGATTTCGGTAGCTATGAGATGAGAT 60.404 42.308 0.00 0.00 35.37 2.75
543 581 7.201652 CGATTTCGGTAGCTATGAGATGAGATA 60.202 40.741 0.00 0.00 35.37 1.98
544 582 7.946381 TTTCGGTAGCTATGAGATGAGATAT 57.054 36.000 0.00 0.00 0.00 1.63
545 583 7.561021 TTCGGTAGCTATGAGATGAGATATC 57.439 40.000 0.00 0.00 0.00 1.63
546 584 6.653989 TCGGTAGCTATGAGATGAGATATCA 58.346 40.000 5.32 0.00 34.66 2.15
547 585 7.286313 TCGGTAGCTATGAGATGAGATATCAT 58.714 38.462 1.59 1.59 43.12 2.45
548 586 7.443879 TCGGTAGCTATGAGATGAGATATCATC 59.556 40.741 20.37 20.37 40.15 2.92
576 614 1.961793 ACGCTTGTAGCTTTCCAACA 58.038 45.000 0.00 0.00 39.60 3.33
596 635 9.407380 TCCAACATTTGACTATAATAGTGCAAT 57.593 29.630 0.00 0.00 39.59 3.56
602 641 9.797642 ATTTGACTATAATAGTGCAATCATCCA 57.202 29.630 0.00 0.00 39.59 3.41
603 642 8.607441 TTGACTATAATAGTGCAATCATCCAC 57.393 34.615 0.00 0.00 39.59 4.02
604 643 6.868339 TGACTATAATAGTGCAATCATCCACG 59.132 38.462 0.00 0.00 39.59 4.94
605 644 5.639506 ACTATAATAGTGCAATCATCCACGC 59.360 40.000 0.00 0.00 37.69 5.34
606 645 2.627515 ATAGTGCAATCATCCACGCT 57.372 45.000 0.00 0.00 37.07 5.07
607 646 2.401583 TAGTGCAATCATCCACGCTT 57.598 45.000 0.00 0.00 37.07 4.68
608 647 0.806868 AGTGCAATCATCCACGCTTG 59.193 50.000 0.00 0.00 37.07 4.01
609 648 0.523072 GTGCAATCATCCACGCTTGT 59.477 50.000 0.00 0.00 0.00 3.16
610 649 1.737236 GTGCAATCATCCACGCTTGTA 59.263 47.619 0.00 0.00 0.00 2.41
611 650 2.009051 TGCAATCATCCACGCTTGTAG 58.991 47.619 0.00 0.00 0.00 2.74
612 651 2.009774 GCAATCATCCACGCTTGTAGT 58.990 47.619 0.00 0.00 0.00 2.73
613 652 2.420022 GCAATCATCCACGCTTGTAGTT 59.580 45.455 0.00 0.00 0.00 2.24
614 653 3.728864 GCAATCATCCACGCTTGTAGTTG 60.729 47.826 0.00 0.00 0.00 3.16
615 654 2.831685 TCATCCACGCTTGTAGTTGT 57.168 45.000 0.00 0.00 0.00 3.32
616 655 3.945981 TCATCCACGCTTGTAGTTGTA 57.054 42.857 0.00 0.00 0.00 2.41
617 656 3.845178 TCATCCACGCTTGTAGTTGTAG 58.155 45.455 0.00 0.00 0.00 2.74
618 657 2.074547 TCCACGCTTGTAGTTGTAGC 57.925 50.000 0.00 0.00 0.00 3.58
619 658 1.616865 TCCACGCTTGTAGTTGTAGCT 59.383 47.619 0.00 0.00 32.80 3.32
620 659 2.036733 TCCACGCTTGTAGTTGTAGCTT 59.963 45.455 0.00 0.00 32.80 3.74
621 660 2.806244 CCACGCTTGTAGTTGTAGCTTT 59.194 45.455 0.00 0.00 32.80 3.51
622 661 3.120649 CCACGCTTGTAGTTGTAGCTTTC 60.121 47.826 0.00 0.00 32.80 2.62
623 662 3.064931 ACGCTTGTAGTTGTAGCTTTCC 58.935 45.455 0.00 0.00 32.80 3.13
624 663 3.064207 CGCTTGTAGTTGTAGCTTTCCA 58.936 45.455 0.00 0.00 32.80 3.53
625 664 3.496884 CGCTTGTAGTTGTAGCTTTCCAA 59.503 43.478 0.00 0.00 32.80 3.53
626 665 4.610680 CGCTTGTAGTTGTAGCTTTCCAAC 60.611 45.833 12.95 12.95 40.94 3.77
628 667 5.008712 GCTTGTAGTTGTAGCTTTCCAACTT 59.991 40.000 22.91 12.47 46.82 2.66
629 668 6.459710 GCTTGTAGTTGTAGCTTTCCAACTTT 60.460 38.462 22.91 9.57 46.82 2.66
630 669 7.399245 TTGTAGTTGTAGCTTTCCAACTTTT 57.601 32.000 22.91 9.05 46.82 2.27
631 670 6.791303 TGTAGTTGTAGCTTTCCAACTTTTG 58.209 36.000 22.91 0.00 46.82 2.44
632 671 6.600032 TGTAGTTGTAGCTTTCCAACTTTTGA 59.400 34.615 22.91 9.30 46.82 2.69
633 672 5.891451 AGTTGTAGCTTTCCAACTTTTGAC 58.109 37.500 16.10 0.00 46.82 3.18
634 673 5.652452 AGTTGTAGCTTTCCAACTTTTGACT 59.348 36.000 16.10 0.00 46.82 3.41
635 674 6.826741 AGTTGTAGCTTTCCAACTTTTGACTA 59.173 34.615 16.10 0.00 46.82 2.59
636 675 7.502561 AGTTGTAGCTTTCCAACTTTTGACTAT 59.497 33.333 16.10 0.00 46.82 2.12
637 676 8.780249 GTTGTAGCTTTCCAACTTTTGACTATA 58.220 33.333 13.36 0.00 38.30 1.31
638 677 8.911918 TGTAGCTTTCCAACTTTTGACTATAA 57.088 30.769 0.00 0.00 0.00 0.98
639 678 9.515226 TGTAGCTTTCCAACTTTTGACTATAAT 57.485 29.630 0.00 0.00 0.00 1.28
642 681 9.178758 AGCTTTCCAACTTTTGACTATAATAGG 57.821 33.333 0.00 0.00 0.00 2.57
643 682 7.915923 GCTTTCCAACTTTTGACTATAATAGGC 59.084 37.037 0.00 0.00 0.00 3.93
644 683 9.178758 CTTTCCAACTTTTGACTATAATAGGCT 57.821 33.333 0.00 0.00 33.94 4.58
645 684 8.732746 TTCCAACTTTTGACTATAATAGGCTC 57.267 34.615 0.00 0.00 33.94 4.70
646 685 7.280356 TCCAACTTTTGACTATAATAGGCTCC 58.720 38.462 0.00 0.00 33.94 4.70
647 686 6.202954 CCAACTTTTGACTATAATAGGCTCCG 59.797 42.308 0.00 0.00 33.94 4.63
648 687 5.855045 ACTTTTGACTATAATAGGCTCCGG 58.145 41.667 0.00 0.00 33.94 5.14
649 688 3.955650 TTGACTATAATAGGCTCCGGC 57.044 47.619 0.00 0.00 33.94 6.13
650 689 3.170991 TGACTATAATAGGCTCCGGCT 57.829 47.619 0.00 0.00 42.39 5.52
651 690 3.090037 TGACTATAATAGGCTCCGGCTC 58.910 50.000 0.00 0.00 39.70 4.70
652 691 2.427812 GACTATAATAGGCTCCGGCTCC 59.572 54.545 0.00 0.00 39.70 4.70
653 692 1.405821 CTATAATAGGCTCCGGCTCCG 59.594 57.143 0.00 0.48 39.70 4.63
720 765 5.460419 GCTCCTCAGATAGTTTATTGTGTCG 59.540 44.000 0.00 0.00 0.00 4.35
722 767 4.508124 CCTCAGATAGTTTATTGTGTCGGC 59.492 45.833 0.00 0.00 0.00 5.54
723 768 4.439057 TCAGATAGTTTATTGTGTCGGCC 58.561 43.478 0.00 0.00 0.00 6.13
766 812 1.742880 CCGCCTGTGTCTCACATGG 60.743 63.158 0.00 8.08 43.71 3.66
830 909 1.817099 CAAGCCATCGAGTGCCTCC 60.817 63.158 5.42 0.00 0.00 4.30
885 965 1.885850 GTGGCGGGCCTATACAACG 60.886 63.158 11.55 0.00 36.94 4.10
888 968 0.745486 GGCGGGCCTATACAACGTTT 60.745 55.000 0.84 0.00 0.00 3.60
907 1087 8.475331 AACGTTTATGAGGTTGATTAGTAGTG 57.525 34.615 0.00 0.00 35.20 2.74
986 1199 2.334023 ACCTTCTTCAGAACCAGAGCT 58.666 47.619 0.00 0.00 0.00 4.09
997 1210 4.392445 CAGAACCAGAGCTTGAGATTTCAG 59.608 45.833 0.00 0.00 34.15 3.02
1060 1273 1.193323 CAGCACTGAGGAGACAGGAT 58.807 55.000 0.00 0.00 41.59 3.24
1062 1275 0.461693 GCACTGAGGAGACAGGATGC 60.462 60.000 0.00 0.00 42.53 3.91
1176 1389 5.008019 GCAGATGATATCGGTCATGTTTGTT 59.992 40.000 9.71 0.00 38.88 2.83
1185 1398 3.088532 GGTCATGTTTGTTGGCCATCTA 58.911 45.455 6.09 0.00 38.76 1.98
1188 1401 2.214376 TGTTTGTTGGCCATCTAGGG 57.786 50.000 6.09 0.00 38.09 3.53
1316 1539 5.996669 TGATCCTCATGAATGAATGAACG 57.003 39.130 0.00 0.00 36.16 3.95
1334 1557 4.748102 TGAACGACTAACATCAACCTGAAC 59.252 41.667 0.00 0.00 0.00 3.18
1349 1576 6.875726 TCAACCTGAACATCTTCTCTTGTATG 59.124 38.462 0.00 0.00 0.00 2.39
1351 1578 7.482169 ACCTGAACATCTTCTCTTGTATGTA 57.518 36.000 0.00 0.00 32.44 2.29
1352 1579 7.324178 ACCTGAACATCTTCTCTTGTATGTAC 58.676 38.462 0.00 0.00 32.44 2.90
1573 1804 1.207488 TGGGGGCACAGAGCTACATT 61.207 55.000 0.00 0.00 44.79 2.71
1714 1945 1.008079 GCTTGTGTGCTGGTTGCTC 60.008 57.895 0.00 0.00 43.37 4.26
1849 2094 2.104792 CACCTGGACAGACCTCTCAAAA 59.895 50.000 0.00 0.00 39.86 2.44
1986 4080 4.305769 CATCTTCGACTGAATCTGATCCC 58.694 47.826 0.00 0.00 32.61 3.85
1994 4093 5.510349 CGACTGAATCTGATCCCACATGTAT 60.510 44.000 0.00 0.00 0.00 2.29
2014 4113 0.115349 ACAGCCTAGAGTGGTGGTCT 59.885 55.000 0.00 0.00 0.00 3.85
2053 4152 0.974383 TCTCCGGACTTCTCCCAAAC 59.026 55.000 0.00 0.00 31.93 2.93
2059 4158 2.039348 CGGACTTCTCCCAAACCCTAAA 59.961 50.000 0.00 0.00 31.93 1.85
2129 4231 7.040755 TGGAGTATTTCATATTTTGTATGCCCG 60.041 37.037 0.00 0.00 0.00 6.13
2224 4332 0.396811 GGGCAGCCATAAGGTACGAT 59.603 55.000 15.19 0.00 37.19 3.73
2225 4333 1.621814 GGGCAGCCATAAGGTACGATA 59.378 52.381 15.19 0.00 37.19 2.92
2226 4334 2.612221 GGGCAGCCATAAGGTACGATAC 60.612 54.545 15.19 0.00 37.19 2.24
2227 4335 2.325761 GCAGCCATAAGGTACGATACG 58.674 52.381 0.00 0.00 37.19 3.06
2228 4336 2.030540 GCAGCCATAAGGTACGATACGA 60.031 50.000 0.00 0.00 37.19 3.43
2263 4404 6.252967 TGTCATGCCTGTATTACAACTTTG 57.747 37.500 0.00 0.00 0.00 2.77
2696 4929 8.606040 TTCGATGAATGATATGTAGCATTTCA 57.394 30.769 5.15 5.11 41.80 2.69
2871 5108 0.251916 TTGTCTACCATCTTGGCGGG 59.748 55.000 0.00 0.00 42.67 6.13
2889 5136 3.128349 CGGGATGGTACTGATTTTACCG 58.872 50.000 0.00 0.00 41.87 4.02
2919 5166 5.968254 TCGTACCATGCATACAGAAAGTTA 58.032 37.500 0.00 0.00 0.00 2.24
3178 15245 1.293924 GTGTGGCTCATCATCTTCCG 58.706 55.000 0.00 0.00 0.00 4.30
3357 15451 0.953960 AATTGGTCACGGCTTCGTCC 60.954 55.000 0.00 0.00 46.38 4.79
3391 15485 2.470983 TGGCACACGAAATGATCTGA 57.529 45.000 0.00 0.00 0.00 3.27
3401 15495 4.156556 ACGAAATGATCTGATTTGGTGGTG 59.843 41.667 5.67 0.00 34.22 4.17
3429 15523 4.784300 TCATGGATATGGCACTATGGATGA 59.216 41.667 0.00 0.00 34.97 2.92
3586 15698 7.117812 GCACTAAGAGCTGTAAGTGTATGAAAA 59.882 37.037 16.22 0.00 41.11 2.29
3616 17277 3.387374 TGAAAATGAAGTGGGTGTGCATT 59.613 39.130 0.00 0.00 0.00 3.56
3624 17285 1.408702 GTGGGTGTGCATTCAACTTGT 59.591 47.619 0.00 0.00 0.00 3.16
3672 17420 1.001406 GGAAGCCCATCATCGGAGTAG 59.999 57.143 0.00 0.00 0.00 2.57
3682 17431 2.565391 TCATCGGAGTAGACAAGCCAAA 59.435 45.455 0.00 0.00 0.00 3.28
3776 17626 3.540617 TGCTACTTTGAAGCACAAGTGA 58.459 40.909 4.04 0.00 44.78 3.41
3800 17652 7.398618 TGAGGAAAAAGATAATAACATTGCCCA 59.601 33.333 0.00 0.00 0.00 5.36
3827 17679 4.776795 TTTTTATGGACTCTTTTCGGCC 57.223 40.909 0.00 0.00 0.00 6.13
3828 17680 3.713826 TTTATGGACTCTTTTCGGCCT 57.286 42.857 0.00 0.00 0.00 5.19
3829 17681 2.981859 TATGGACTCTTTTCGGCCTC 57.018 50.000 0.00 0.00 0.00 4.70
4004 18271 1.276138 CTGACAGTGTACCAGGATGCA 59.724 52.381 0.00 0.00 31.97 3.96
4005 18272 1.001974 TGACAGTGTACCAGGATGCAC 59.998 52.381 0.00 0.00 31.97 4.57
4006 18273 1.001974 GACAGTGTACCAGGATGCACA 59.998 52.381 0.00 1.23 34.59 4.57
4007 18274 1.419762 ACAGTGTACCAGGATGCACAA 59.580 47.619 0.00 0.00 32.48 3.33
4008 18275 2.040278 ACAGTGTACCAGGATGCACAAT 59.960 45.455 0.00 0.76 32.48 2.71
4009 18276 2.421073 CAGTGTACCAGGATGCACAATG 59.579 50.000 12.76 7.89 38.52 2.82
4010 18277 2.305635 AGTGTACCAGGATGCACAATGA 59.694 45.455 12.76 0.00 32.48 2.57
4011 18278 3.054139 AGTGTACCAGGATGCACAATGAT 60.054 43.478 12.76 0.00 32.48 2.45
4012 18279 3.696051 GTGTACCAGGATGCACAATGATT 59.304 43.478 0.00 0.00 32.48 2.57
4013 18280 4.158394 GTGTACCAGGATGCACAATGATTT 59.842 41.667 0.00 0.00 32.48 2.17
4014 18281 5.356751 GTGTACCAGGATGCACAATGATTTA 59.643 40.000 0.00 0.00 32.48 1.40
4015 18282 5.948758 TGTACCAGGATGCACAATGATTTAA 59.051 36.000 0.00 0.00 31.97 1.52
4016 18283 5.329035 ACCAGGATGCACAATGATTTAAC 57.671 39.130 0.00 0.00 31.97 2.01
4021 18288 6.468956 CAGGATGCACAATGATTTAACGTAAC 59.531 38.462 0.00 0.00 0.00 2.50
4067 19070 1.068474 GATGAACGGTGGTTGAGTCG 58.932 55.000 0.00 0.00 36.24 4.18
4155 19828 0.467290 AACGGTGGAAGTTGCATGGT 60.467 50.000 0.00 0.00 0.00 3.55
4239 19967 9.988815 GAGGAAGATATAAAGAAGCTTATGTGA 57.011 33.333 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.390603 TGTCGTCTTGGGCCAATACG 60.391 55.000 36.99 36.99 42.45 3.06
3 4 1.084289 GTGTCGTCTTGGGCCAATAC 58.916 55.000 21.25 21.31 0.00 1.89
4 5 0.035820 GGTGTCGTCTTGGGCCAATA 60.036 55.000 21.25 10.30 0.00 1.90
5 6 1.303317 GGTGTCGTCTTGGGCCAAT 60.303 57.895 21.25 0.00 0.00 3.16
8 9 2.668550 GTGGTGTCGTCTTGGGCC 60.669 66.667 0.00 0.00 0.00 5.80
9 10 1.668151 GAGTGGTGTCGTCTTGGGC 60.668 63.158 0.00 0.00 0.00 5.36
11 12 0.321671 ATGGAGTGGTGTCGTCTTGG 59.678 55.000 0.00 0.00 0.00 3.61
12 13 1.000843 TGATGGAGTGGTGTCGTCTTG 59.999 52.381 0.00 0.00 0.00 3.02
13 14 1.338107 TGATGGAGTGGTGTCGTCTT 58.662 50.000 0.00 0.00 0.00 3.01
14 15 1.478510 GATGATGGAGTGGTGTCGTCT 59.521 52.381 0.00 0.00 0.00 4.18
15 16 1.471676 GGATGATGGAGTGGTGTCGTC 60.472 57.143 0.00 0.00 0.00 4.20
16 17 0.537188 GGATGATGGAGTGGTGTCGT 59.463 55.000 0.00 0.00 0.00 4.34
17 18 0.179073 GGGATGATGGAGTGGTGTCG 60.179 60.000 0.00 0.00 0.00 4.35
21 22 0.031515 TACGGGGATGATGGAGTGGT 60.032 55.000 0.00 0.00 0.00 4.16
22 23 0.681733 CTACGGGGATGATGGAGTGG 59.318 60.000 0.00 0.00 0.00 4.00
23 24 0.034059 GCTACGGGGATGATGGAGTG 59.966 60.000 0.00 0.00 0.00 3.51
25 26 1.674057 GGCTACGGGGATGATGGAG 59.326 63.158 0.00 0.00 0.00 3.86
27 28 2.343758 CGGCTACGGGGATGATGG 59.656 66.667 0.00 0.00 36.18 3.51
73 74 4.016706 AAGTTGTCCCCGGCCGAG 62.017 66.667 30.73 15.25 0.00 4.63
79 80 2.358247 CCGACCAAGTTGTCCCCG 60.358 66.667 1.45 0.00 31.35 5.73
80 81 2.033602 CCCGACCAAGTTGTCCCC 59.966 66.667 1.45 0.00 31.35 4.81
81 82 2.671963 GCCCGACCAAGTTGTCCC 60.672 66.667 1.45 0.00 31.35 4.46
84 85 2.113139 CAGGCCCGACCAAGTTGT 59.887 61.111 0.00 0.00 43.14 3.32
85 86 3.365265 GCAGGCCCGACCAAGTTG 61.365 66.667 0.00 0.00 43.14 3.16
109 110 3.864186 TACCATAACGGCGGCCCC 61.864 66.667 14.55 0.00 39.03 5.80
110 111 2.589724 GTACCATAACGGCGGCCC 60.590 66.667 14.55 0.00 39.03 5.80
111 112 1.885850 CAGTACCATAACGGCGGCC 60.886 63.158 13.24 9.54 39.03 6.13
112 113 0.741927 AACAGTACCATAACGGCGGC 60.742 55.000 13.24 0.00 39.03 6.53
113 114 1.134907 AGAACAGTACCATAACGGCGG 60.135 52.381 13.24 0.00 39.03 6.13
114 115 2.288961 AGAACAGTACCATAACGGCG 57.711 50.000 4.80 4.80 39.03 6.46
115 116 2.095372 GCAAGAACAGTACCATAACGGC 59.905 50.000 0.00 0.00 39.03 5.68
116 117 2.676342 GGCAAGAACAGTACCATAACGG 59.324 50.000 0.00 0.00 42.50 4.44
117 118 2.676342 GGGCAAGAACAGTACCATAACG 59.324 50.000 0.00 0.00 0.00 3.18
118 119 3.439129 GTGGGCAAGAACAGTACCATAAC 59.561 47.826 0.00 0.00 0.00 1.89
119 120 3.073209 TGTGGGCAAGAACAGTACCATAA 59.927 43.478 0.00 0.00 0.00 1.90
120 121 2.640332 TGTGGGCAAGAACAGTACCATA 59.360 45.455 0.00 0.00 0.00 2.74
121 122 1.423541 TGTGGGCAAGAACAGTACCAT 59.576 47.619 0.00 0.00 0.00 3.55
122 123 0.840617 TGTGGGCAAGAACAGTACCA 59.159 50.000 0.00 0.00 0.00 3.25
123 124 1.235724 GTGTGGGCAAGAACAGTACC 58.764 55.000 0.00 0.00 0.00 3.34
124 125 1.235724 GGTGTGGGCAAGAACAGTAC 58.764 55.000 0.00 0.00 0.00 2.73
125 126 0.109723 GGGTGTGGGCAAGAACAGTA 59.890 55.000 0.00 0.00 0.00 2.74
126 127 1.152756 GGGTGTGGGCAAGAACAGT 60.153 57.895 0.00 0.00 0.00 3.55
127 128 0.468029 AAGGGTGTGGGCAAGAACAG 60.468 55.000 0.00 0.00 0.00 3.16
128 129 0.032615 AAAGGGTGTGGGCAAGAACA 60.033 50.000 0.00 0.00 0.00 3.18
129 130 0.389025 CAAAGGGTGTGGGCAAGAAC 59.611 55.000 0.00 0.00 0.00 3.01
130 131 1.398958 GCAAAGGGTGTGGGCAAGAA 61.399 55.000 0.00 0.00 0.00 2.52
131 132 1.832167 GCAAAGGGTGTGGGCAAGA 60.832 57.895 0.00 0.00 0.00 3.02
132 133 1.809567 GAGCAAAGGGTGTGGGCAAG 61.810 60.000 0.00 0.00 0.00 4.01
133 134 1.832167 GAGCAAAGGGTGTGGGCAA 60.832 57.895 0.00 0.00 0.00 4.52
134 135 2.203480 GAGCAAAGGGTGTGGGCA 60.203 61.111 0.00 0.00 0.00 5.36
135 136 1.598701 GATGAGCAAAGGGTGTGGGC 61.599 60.000 0.00 0.00 0.00 5.36
136 137 0.038744 AGATGAGCAAAGGGTGTGGG 59.961 55.000 0.00 0.00 0.00 4.61
137 138 1.915141 AAGATGAGCAAAGGGTGTGG 58.085 50.000 0.00 0.00 0.00 4.17
138 139 3.120199 CGTAAAGATGAGCAAAGGGTGTG 60.120 47.826 0.00 0.00 0.00 3.82
139 140 3.074412 CGTAAAGATGAGCAAAGGGTGT 58.926 45.455 0.00 0.00 0.00 4.16
140 141 2.159517 GCGTAAAGATGAGCAAAGGGTG 60.160 50.000 0.00 0.00 0.00 4.61
141 142 2.084546 GCGTAAAGATGAGCAAAGGGT 58.915 47.619 0.00 0.00 0.00 4.34
142 143 1.401905 GGCGTAAAGATGAGCAAAGGG 59.598 52.381 0.00 0.00 0.00 3.95
143 144 1.062587 CGGCGTAAAGATGAGCAAAGG 59.937 52.381 0.00 0.00 0.00 3.11
144 145 1.529826 GCGGCGTAAAGATGAGCAAAG 60.530 52.381 9.37 0.00 0.00 2.77
145 146 0.446222 GCGGCGTAAAGATGAGCAAA 59.554 50.000 9.37 0.00 0.00 3.68
146 147 0.672091 TGCGGCGTAAAGATGAGCAA 60.672 50.000 9.37 0.00 0.00 3.91
147 148 0.461870 ATGCGGCGTAAAGATGAGCA 60.462 50.000 9.37 0.00 37.54 4.26
148 149 0.233332 GATGCGGCGTAAAGATGAGC 59.767 55.000 9.37 0.00 0.00 4.26
149 150 0.504384 CGATGCGGCGTAAAGATGAG 59.496 55.000 9.37 0.00 0.00 2.90
150 151 1.487452 GCGATGCGGCGTAAAGATGA 61.487 55.000 9.37 0.00 0.00 2.92
151 152 1.083401 GCGATGCGGCGTAAAGATG 60.083 57.895 9.37 0.00 0.00 2.90
152 153 1.490693 CTGCGATGCGGCGTAAAGAT 61.491 55.000 9.37 0.00 35.06 2.40
153 154 2.125872 TGCGATGCGGCGTAAAGA 60.126 55.556 9.37 0.00 35.06 2.52
154 155 2.082437 CTCTGCGATGCGGCGTAAAG 62.082 60.000 9.37 3.53 34.49 1.85
155 156 2.125872 TCTGCGATGCGGCGTAAA 60.126 55.556 9.37 0.00 34.49 2.01
156 157 2.582226 CTCTGCGATGCGGCGTAA 60.582 61.111 9.37 0.00 34.49 3.18
157 158 4.569023 CCTCTGCGATGCGGCGTA 62.569 66.667 9.37 3.65 34.49 4.42
160 161 3.127533 AAACCTCTGCGATGCGGC 61.128 61.111 0.00 0.00 34.49 6.53
161 162 2.787249 CAAACCTCTGCGATGCGG 59.213 61.111 0.00 0.00 36.06 5.69
162 163 2.099062 GCAAACCTCTGCGATGCG 59.901 61.111 0.00 0.00 31.50 4.73
163 164 1.660560 ATGGCAAACCTCTGCGATGC 61.661 55.000 0.00 0.00 43.60 3.91
164 165 1.667236 TATGGCAAACCTCTGCGATG 58.333 50.000 0.00 0.00 43.60 3.84
165 166 2.645838 ATATGGCAAACCTCTGCGAT 57.354 45.000 0.00 0.00 43.60 4.58
166 167 2.418368 AATATGGCAAACCTCTGCGA 57.582 45.000 0.00 0.00 43.60 5.10
167 168 3.508744 AAAATATGGCAAACCTCTGCG 57.491 42.857 0.00 0.00 43.60 5.18
186 187 7.132213 CAGATAAGACGCTGAAGAAACAAAAA 58.868 34.615 0.00 0.00 34.06 1.94
187 188 6.260050 ACAGATAAGACGCTGAAGAAACAAAA 59.740 34.615 0.00 0.00 36.07 2.44
188 189 5.758296 ACAGATAAGACGCTGAAGAAACAAA 59.242 36.000 0.00 0.00 36.07 2.83
189 190 5.177511 CACAGATAAGACGCTGAAGAAACAA 59.822 40.000 0.00 0.00 36.07 2.83
190 191 4.686091 CACAGATAAGACGCTGAAGAAACA 59.314 41.667 0.00 0.00 36.07 2.83
191 192 4.434857 GCACAGATAAGACGCTGAAGAAAC 60.435 45.833 0.00 0.00 36.07 2.78
192 193 3.679980 GCACAGATAAGACGCTGAAGAAA 59.320 43.478 0.00 0.00 36.07 2.52
193 194 3.254060 GCACAGATAAGACGCTGAAGAA 58.746 45.455 0.00 0.00 36.07 2.52
194 195 2.732282 CGCACAGATAAGACGCTGAAGA 60.732 50.000 0.00 0.00 36.07 2.87
195 196 1.585668 CGCACAGATAAGACGCTGAAG 59.414 52.381 0.00 0.00 36.07 3.02
196 197 1.067846 ACGCACAGATAAGACGCTGAA 60.068 47.619 0.00 0.00 36.07 3.02
197 198 0.526211 ACGCACAGATAAGACGCTGA 59.474 50.000 0.00 0.00 36.07 4.26
198 199 0.642291 CACGCACAGATAAGACGCTG 59.358 55.000 0.00 0.00 38.10 5.18
199 200 0.458543 CCACGCACAGATAAGACGCT 60.459 55.000 0.00 0.00 0.00 5.07
200 201 0.457853 TCCACGCACAGATAAGACGC 60.458 55.000 0.00 0.00 0.00 5.19
201 202 1.990799 TTCCACGCACAGATAAGACG 58.009 50.000 0.00 0.00 0.00 4.18
202 203 3.309954 GGAATTCCACGCACAGATAAGAC 59.690 47.826 20.04 0.00 35.64 3.01
203 204 3.531538 GGAATTCCACGCACAGATAAGA 58.468 45.455 20.04 0.00 35.64 2.10
204 205 2.285220 CGGAATTCCACGCACAGATAAG 59.715 50.000 24.09 0.00 35.14 1.73
205 206 2.093921 TCGGAATTCCACGCACAGATAA 60.094 45.455 24.09 0.00 35.14 1.75
206 207 1.478916 TCGGAATTCCACGCACAGATA 59.521 47.619 24.09 0.00 35.14 1.98
207 208 0.249120 TCGGAATTCCACGCACAGAT 59.751 50.000 24.09 0.00 35.14 2.90
208 209 0.034198 TTCGGAATTCCACGCACAGA 59.966 50.000 24.09 8.46 35.14 3.41
209 210 0.165944 GTTCGGAATTCCACGCACAG 59.834 55.000 24.09 6.15 35.14 3.66
210 211 0.250124 AGTTCGGAATTCCACGCACA 60.250 50.000 24.09 0.00 35.14 4.57
211 212 0.442699 GAGTTCGGAATTCCACGCAC 59.557 55.000 24.09 13.46 35.14 5.34
212 213 0.672401 GGAGTTCGGAATTCCACGCA 60.672 55.000 24.09 1.90 37.26 5.24
213 214 0.672401 TGGAGTTCGGAATTCCACGC 60.672 55.000 25.67 16.12 41.72 5.34
214 215 3.525619 TGGAGTTCGGAATTCCACG 57.474 52.632 25.67 11.22 41.72 4.94
217 218 4.783764 AACAAATGGAGTTCGGAATTCC 57.216 40.909 21.58 21.58 37.76 3.01
218 219 5.048013 AGGAAACAAATGGAGTTCGGAATTC 60.048 40.000 4.79 4.79 0.00 2.17
219 220 4.832823 AGGAAACAAATGGAGTTCGGAATT 59.167 37.500 0.00 0.00 0.00 2.17
220 221 4.407365 AGGAAACAAATGGAGTTCGGAAT 58.593 39.130 0.00 0.00 0.00 3.01
221 222 3.818773 GAGGAAACAAATGGAGTTCGGAA 59.181 43.478 0.00 0.00 0.00 4.30
222 223 3.181449 TGAGGAAACAAATGGAGTTCGGA 60.181 43.478 0.00 0.00 0.00 4.55
223 224 3.058224 GTGAGGAAACAAATGGAGTTCGG 60.058 47.826 0.00 0.00 0.00 4.30
224 225 3.563808 TGTGAGGAAACAAATGGAGTTCG 59.436 43.478 0.00 0.00 0.00 3.95
225 226 5.514274 TTGTGAGGAAACAAATGGAGTTC 57.486 39.130 0.00 0.00 37.12 3.01
226 227 5.930837 TTTGTGAGGAAACAAATGGAGTT 57.069 34.783 0.00 0.00 43.34 3.01
233 234 5.730296 TTTGGAGTTTGTGAGGAAACAAA 57.270 34.783 0.00 0.00 45.38 2.83
234 235 5.163457 GGATTTGGAGTTTGTGAGGAAACAA 60.163 40.000 0.00 0.00 38.14 2.83
235 236 4.340950 GGATTTGGAGTTTGTGAGGAAACA 59.659 41.667 0.00 0.00 38.14 2.83
236 237 4.556699 CGGATTTGGAGTTTGTGAGGAAAC 60.557 45.833 0.00 0.00 36.28 2.78
237 238 3.568007 CGGATTTGGAGTTTGTGAGGAAA 59.432 43.478 0.00 0.00 0.00 3.13
238 239 3.146066 CGGATTTGGAGTTTGTGAGGAA 58.854 45.455 0.00 0.00 0.00 3.36
239 240 2.778299 CGGATTTGGAGTTTGTGAGGA 58.222 47.619 0.00 0.00 0.00 3.71
240 241 1.200020 GCGGATTTGGAGTTTGTGAGG 59.800 52.381 0.00 0.00 0.00 3.86
241 242 2.095567 CAGCGGATTTGGAGTTTGTGAG 60.096 50.000 0.00 0.00 0.00 3.51
242 243 1.879380 CAGCGGATTTGGAGTTTGTGA 59.121 47.619 0.00 0.00 0.00 3.58
243 244 1.608590 ACAGCGGATTTGGAGTTTGTG 59.391 47.619 0.00 0.00 0.00 3.33
244 245 1.981256 ACAGCGGATTTGGAGTTTGT 58.019 45.000 0.00 0.00 0.00 2.83
245 246 2.664916 CAACAGCGGATTTGGAGTTTG 58.335 47.619 0.00 0.00 0.00 2.93
246 247 1.000274 GCAACAGCGGATTTGGAGTTT 60.000 47.619 0.00 0.00 0.00 2.66
247 248 0.598065 GCAACAGCGGATTTGGAGTT 59.402 50.000 0.00 0.00 0.00 3.01
248 249 1.244019 GGCAACAGCGGATTTGGAGT 61.244 55.000 0.00 0.00 0.00 3.85
249 250 1.508088 GGCAACAGCGGATTTGGAG 59.492 57.895 0.00 0.00 0.00 3.86
257 258 2.361610 AGGAATGGGCAACAGCGG 60.362 61.111 0.00 0.00 39.74 5.52
258 259 1.033746 ATCAGGAATGGGCAACAGCG 61.034 55.000 0.00 0.00 39.74 5.18
271 272 4.637534 GCTGTTTTCTGCTATGAATCAGGA 59.362 41.667 0.00 0.00 40.75 3.86
279 280 2.005451 AGCTCGCTGTTTTCTGCTATG 58.995 47.619 0.00 0.00 41.56 2.23
282 283 1.801178 GTAAGCTCGCTGTTTTCTGCT 59.199 47.619 0.00 0.00 41.56 4.24
283 284 1.462541 CGTAAGCTCGCTGTTTTCTGC 60.463 52.381 0.00 0.00 40.57 4.26
284 285 1.126846 CCGTAAGCTCGCTGTTTTCTG 59.873 52.381 0.00 0.00 0.00 3.02
285 286 1.429463 CCGTAAGCTCGCTGTTTTCT 58.571 50.000 0.00 0.00 0.00 2.52
286 287 0.442699 CCCGTAAGCTCGCTGTTTTC 59.557 55.000 0.00 0.00 0.00 2.29
293 294 2.413765 CCTCTCCCGTAAGCTCGC 59.586 66.667 0.00 0.00 0.00 5.03
310 311 2.282180 TTTTCTGCTGACGCCCCC 60.282 61.111 0.00 0.00 34.43 5.40
336 337 4.274950 GGTTCCTGAATTTCGAGTTTGTGA 59.725 41.667 0.00 0.00 0.00 3.58
337 338 4.537015 GGTTCCTGAATTTCGAGTTTGTG 58.463 43.478 0.00 0.00 0.00 3.33
338 339 3.568430 GGGTTCCTGAATTTCGAGTTTGT 59.432 43.478 0.00 0.00 0.00 2.83
339 340 3.568007 TGGGTTCCTGAATTTCGAGTTTG 59.432 43.478 0.00 0.00 0.00 2.93
340 341 3.827722 TGGGTTCCTGAATTTCGAGTTT 58.172 40.909 0.00 0.00 0.00 2.66
372 373 5.701290 CCCGTGGTTTATTCATAGGAGATTC 59.299 44.000 0.00 0.00 0.00 2.52
373 374 5.621193 CCCGTGGTTTATTCATAGGAGATT 58.379 41.667 0.00 0.00 0.00 2.40
374 375 4.505039 GCCCGTGGTTTATTCATAGGAGAT 60.505 45.833 0.00 0.00 0.00 2.75
375 376 3.181458 GCCCGTGGTTTATTCATAGGAGA 60.181 47.826 0.00 0.00 0.00 3.71
376 377 3.139077 GCCCGTGGTTTATTCATAGGAG 58.861 50.000 0.00 0.00 0.00 3.69
377 378 2.775384 AGCCCGTGGTTTATTCATAGGA 59.225 45.455 0.00 0.00 0.00 2.94
378 379 2.878406 CAGCCCGTGGTTTATTCATAGG 59.122 50.000 0.00 0.00 0.00 2.57
379 380 2.878406 CCAGCCCGTGGTTTATTCATAG 59.122 50.000 0.00 0.00 42.17 2.23
393 394 2.981859 AGTATCAGTTAACCAGCCCG 57.018 50.000 0.88 0.00 0.00 6.13
397 398 7.707035 GTCATGAAGGTAGTATCAGTTAACCAG 59.293 40.741 0.00 0.00 32.43 4.00
413 418 3.430042 AAGATGCACTGTCATGAAGGT 57.570 42.857 0.00 0.00 0.00 3.50
414 419 3.875727 CCTAAGATGCACTGTCATGAAGG 59.124 47.826 0.00 0.00 0.00 3.46
415 420 4.763073 TCCTAAGATGCACTGTCATGAAG 58.237 43.478 0.00 0.00 0.00 3.02
416 421 4.824479 TCCTAAGATGCACTGTCATGAA 57.176 40.909 0.00 0.00 0.00 2.57
417 422 4.824479 TTCCTAAGATGCACTGTCATGA 57.176 40.909 0.00 0.00 0.00 3.07
420 425 6.767902 GGATTATTTCCTAAGATGCACTGTCA 59.232 38.462 0.00 0.00 41.78 3.58
421 426 6.205658 GGGATTATTTCCTAAGATGCACTGTC 59.794 42.308 0.00 0.00 44.75 3.51
422 427 6.064717 GGGATTATTTCCTAAGATGCACTGT 58.935 40.000 0.00 0.00 44.75 3.55
425 430 5.635120 AGGGGATTATTTCCTAAGATGCAC 58.365 41.667 0.00 0.00 44.75 4.57
442 450 8.368668 CGTATCTTCTGACTATAAAAAGGGGAT 58.631 37.037 0.00 0.00 0.00 3.85
443 451 7.562454 TCGTATCTTCTGACTATAAAAAGGGGA 59.438 37.037 0.00 0.00 0.00 4.81
445 453 8.195436 TGTCGTATCTTCTGACTATAAAAAGGG 58.805 37.037 0.00 0.00 33.81 3.95
446 454 9.021863 GTGTCGTATCTTCTGACTATAAAAAGG 57.978 37.037 0.00 0.00 33.81 3.11
447 455 9.569167 TGTGTCGTATCTTCTGACTATAAAAAG 57.431 33.333 0.00 0.00 33.81 2.27
449 457 9.516314 CATGTGTCGTATCTTCTGACTATAAAA 57.484 33.333 0.00 0.00 33.81 1.52
451 459 8.343366 GTCATGTGTCGTATCTTCTGACTATAA 58.657 37.037 0.00 0.00 33.81 0.98
453 461 6.511929 CGTCATGTGTCGTATCTTCTGACTAT 60.512 42.308 0.00 0.00 33.81 2.12
455 463 4.437524 CGTCATGTGTCGTATCTTCTGACT 60.438 45.833 0.00 0.00 33.81 3.41
456 464 3.786576 CGTCATGTGTCGTATCTTCTGAC 59.213 47.826 0.00 0.00 0.00 3.51
457 465 3.687698 TCGTCATGTGTCGTATCTTCTGA 59.312 43.478 0.00 0.00 0.00 3.27
458 466 3.786576 GTCGTCATGTGTCGTATCTTCTG 59.213 47.826 0.00 0.00 0.00 3.02
459 467 3.485381 CGTCGTCATGTGTCGTATCTTCT 60.485 47.826 0.00 0.00 0.00 2.85
461 469 2.417586 TCGTCGTCATGTGTCGTATCTT 59.582 45.455 0.00 0.00 0.00 2.40
462 470 2.004733 TCGTCGTCATGTGTCGTATCT 58.995 47.619 0.00 0.00 0.00 1.98
463 471 2.099621 GTCGTCGTCATGTGTCGTATC 58.900 52.381 0.00 0.00 0.00 2.24
465 473 0.867086 TGTCGTCGTCATGTGTCGTA 59.133 50.000 0.00 0.00 0.00 3.43
466 474 0.385598 CTGTCGTCGTCATGTGTCGT 60.386 55.000 0.00 0.00 0.00 4.34
467 475 1.665544 GCTGTCGTCGTCATGTGTCG 61.666 60.000 0.00 0.00 0.00 4.35
517 555 5.048153 TCATCTCATAGCTACCGAAATCG 57.952 43.478 0.00 0.00 39.44 3.34
518 556 6.260870 TCTCATCTCATAGCTACCGAAATC 57.739 41.667 0.00 0.00 0.00 2.17
519 557 6.849085 ATCTCATCTCATAGCTACCGAAAT 57.151 37.500 0.00 0.00 0.00 2.17
520 558 7.611855 TGATATCTCATCTCATAGCTACCGAAA 59.388 37.037 3.98 0.00 0.00 3.46
521 559 7.112779 TGATATCTCATCTCATAGCTACCGAA 58.887 38.462 3.98 0.00 0.00 4.30
538 576 8.723311 ACAAGCGTAGTAAGTAGATGATATCTC 58.277 37.037 3.98 0.00 40.76 2.75
540 578 9.976255 CTACAAGCGTAGTAAGTAGATGATATC 57.024 37.037 0.00 0.00 40.33 1.63
541 579 8.452534 GCTACAAGCGTAGTAAGTAGATGATAT 58.547 37.037 0.00 0.00 45.92 1.63
542 580 7.804712 GCTACAAGCGTAGTAAGTAGATGATA 58.195 38.462 0.00 0.00 45.92 2.15
543 581 6.670233 GCTACAAGCGTAGTAAGTAGATGAT 58.330 40.000 0.00 0.00 45.92 2.45
544 582 6.057627 GCTACAAGCGTAGTAAGTAGATGA 57.942 41.667 0.00 0.00 45.92 2.92
576 614 9.797642 TGGATGATTGCACTATTATAGTCAAAT 57.202 29.630 15.56 12.10 36.76 2.32
596 635 2.831685 ACAACTACAAGCGTGGATGA 57.168 45.000 4.26 0.00 31.86 2.92
598 637 2.233922 AGCTACAACTACAAGCGTGGAT 59.766 45.455 4.26 0.00 41.19 3.41
600 639 2.080286 AGCTACAACTACAAGCGTGG 57.920 50.000 4.26 0.00 41.19 4.94
602 641 3.064931 GGAAAGCTACAACTACAAGCGT 58.935 45.455 0.00 0.00 41.19 5.07
603 642 3.064207 TGGAAAGCTACAACTACAAGCG 58.936 45.455 0.00 0.00 41.19 4.68
604 643 4.784329 GTTGGAAAGCTACAACTACAAGC 58.216 43.478 16.94 0.00 42.67 4.01
611 650 5.891451 AGTCAAAAGTTGGAAAGCTACAAC 58.109 37.500 16.64 16.64 45.45 3.32
612 651 7.817418 ATAGTCAAAAGTTGGAAAGCTACAA 57.183 32.000 0.00 0.00 0.00 2.41
613 652 8.911918 TTATAGTCAAAAGTTGGAAAGCTACA 57.088 30.769 0.00 0.00 0.00 2.74
616 655 9.178758 CCTATTATAGTCAAAAGTTGGAAAGCT 57.821 33.333 0.00 0.00 0.00 3.74
617 656 7.915923 GCCTATTATAGTCAAAAGTTGGAAAGC 59.084 37.037 0.00 0.00 0.00 3.51
618 657 9.178758 AGCCTATTATAGTCAAAAGTTGGAAAG 57.821 33.333 0.00 0.00 0.00 2.62
619 658 9.174166 GAGCCTATTATAGTCAAAAGTTGGAAA 57.826 33.333 0.00 0.00 0.00 3.13
620 659 7.773690 GGAGCCTATTATAGTCAAAAGTTGGAA 59.226 37.037 0.00 0.00 0.00 3.53
621 660 7.280356 GGAGCCTATTATAGTCAAAAGTTGGA 58.720 38.462 0.00 0.00 0.00 3.53
622 661 6.202954 CGGAGCCTATTATAGTCAAAAGTTGG 59.797 42.308 0.00 0.00 0.00 3.77
623 662 6.202954 CCGGAGCCTATTATAGTCAAAAGTTG 59.797 42.308 0.00 0.00 0.00 3.16
624 663 6.289064 CCGGAGCCTATTATAGTCAAAAGTT 58.711 40.000 0.00 0.00 0.00 2.66
625 664 5.742255 GCCGGAGCCTATTATAGTCAAAAGT 60.742 44.000 5.05 0.00 0.00 2.66
626 665 4.691216 GCCGGAGCCTATTATAGTCAAAAG 59.309 45.833 5.05 0.00 0.00 2.27
627 666 4.347000 AGCCGGAGCCTATTATAGTCAAAA 59.653 41.667 5.05 0.00 41.25 2.44
628 667 3.901844 AGCCGGAGCCTATTATAGTCAAA 59.098 43.478 5.05 0.00 41.25 2.69
629 668 3.507411 AGCCGGAGCCTATTATAGTCAA 58.493 45.455 5.05 0.00 41.25 3.18
630 669 3.090037 GAGCCGGAGCCTATTATAGTCA 58.910 50.000 5.05 0.00 41.25 3.41
631 670 2.427812 GGAGCCGGAGCCTATTATAGTC 59.572 54.545 5.05 0.00 41.25 2.59
632 671 2.458620 GGAGCCGGAGCCTATTATAGT 58.541 52.381 5.05 0.00 41.25 2.12
633 672 1.405821 CGGAGCCGGAGCCTATTATAG 59.594 57.143 5.05 0.00 41.25 1.31
634 673 1.471119 CGGAGCCGGAGCCTATTATA 58.529 55.000 5.05 0.00 41.25 0.98
635 674 2.277858 CGGAGCCGGAGCCTATTAT 58.722 57.895 5.05 0.00 41.25 1.28
636 675 3.773370 CGGAGCCGGAGCCTATTA 58.227 61.111 5.05 0.00 41.25 0.98
648 687 2.356793 CTCGATCATGGCCGGAGC 60.357 66.667 5.05 0.00 38.76 4.70
649 688 2.356793 GCTCGATCATGGCCGGAG 60.357 66.667 5.05 0.00 0.00 4.63
650 689 2.510551 ATGCTCGATCATGGCCGGA 61.511 57.895 5.05 0.00 0.00 5.14
651 690 2.031616 ATGCTCGATCATGGCCGG 59.968 61.111 0.00 0.00 0.00 6.13
652 691 1.596203 ACATGCTCGATCATGGCCG 60.596 57.895 27.57 8.18 46.02 6.13
653 692 1.947013 CACATGCTCGATCATGGCC 59.053 57.895 27.57 0.00 46.02 5.36
654 693 1.281960 GCACATGCTCGATCATGGC 59.718 57.895 27.57 23.21 46.02 4.40
720 765 1.600916 AGCCAAGTTCAAGACGGCC 60.601 57.895 0.00 0.00 44.06 6.13
722 767 1.576421 GCAGCCAAGTTCAAGACGG 59.424 57.895 0.00 0.00 0.00 4.79
723 768 1.165907 TGGCAGCCAAGTTCAAGACG 61.166 55.000 13.33 0.00 0.00 4.18
754 799 5.491982 AGTAAAGAATCCCATGTGAGACAC 58.508 41.667 0.00 0.00 34.56 3.67
766 812 4.262617 GGGTCAAGTGGAGTAAAGAATCC 58.737 47.826 0.00 0.00 36.05 3.01
830 909 4.213482 CAGTAAGGAAACCAAGAGGAAACG 59.787 45.833 0.00 0.00 38.69 3.60
917 1104 7.275560 GGGTGTATTTATCATGTTTGTGAAAGC 59.724 37.037 0.00 0.00 0.00 3.51
986 1199 4.661222 TGGCAACATACCTGAAATCTCAA 58.339 39.130 0.00 0.00 46.17 3.02
1038 1251 1.180907 CTGTCTCCTCAGTGCTGCTA 58.819 55.000 0.00 0.00 0.00 3.49
1060 1273 0.185901 ACCAAGCTCTCTTTTGGGCA 59.814 50.000 4.92 0.00 46.43 5.36
1062 1275 1.251251 CCACCAAGCTCTCTTTTGGG 58.749 55.000 4.92 0.00 46.43 4.12
1176 1389 1.460305 GAGCTCCCCTAGATGGCCA 60.460 63.158 8.56 8.56 0.00 5.36
1185 1398 2.123897 GAGAGAGCGAGCTCCCCT 60.124 66.667 20.15 17.02 43.70 4.79
1311 1534 4.594123 TCAGGTTGATGTTAGTCGTTCA 57.406 40.909 0.00 0.00 0.00 3.18
1312 1535 4.748102 TGTTCAGGTTGATGTTAGTCGTTC 59.252 41.667 0.00 0.00 0.00 3.95
1313 1536 4.699637 TGTTCAGGTTGATGTTAGTCGTT 58.300 39.130 0.00 0.00 0.00 3.85
1314 1537 4.330944 TGTTCAGGTTGATGTTAGTCGT 57.669 40.909 0.00 0.00 0.00 4.34
1316 1539 6.876257 AGAAGATGTTCAGGTTGATGTTAGTC 59.124 38.462 5.28 0.00 34.82 2.59
1334 1557 8.135529 TGATTACGGTACATACAAGAGAAGATG 58.864 37.037 0.00 0.00 0.00 2.90
1349 1576 5.221130 GCCAGACTAAGATGATTACGGTAC 58.779 45.833 0.00 0.00 0.00 3.34
1351 1578 3.704566 TGCCAGACTAAGATGATTACGGT 59.295 43.478 0.00 0.00 0.00 4.83
1352 1579 4.322080 TGCCAGACTAAGATGATTACGG 57.678 45.455 0.00 0.00 0.00 4.02
1562 1793 2.101415 TCATCCACCGAATGTAGCTCTG 59.899 50.000 0.00 0.00 0.00 3.35
1563 1794 2.388735 TCATCCACCGAATGTAGCTCT 58.611 47.619 0.00 0.00 0.00 4.09
1901 2146 4.277476 ACTCAAACTCACCAAACCATCAA 58.723 39.130 0.00 0.00 0.00 2.57
1986 4080 4.342378 ACCACTCTAGGCTGTATACATGTG 59.658 45.833 9.11 7.11 0.00 3.21
1994 4093 1.358103 AGACCACCACTCTAGGCTGTA 59.642 52.381 0.00 0.00 0.00 2.74
2014 4113 3.071602 AGAGAAGTACCAGCAGCTCAAAA 59.928 43.478 0.00 0.00 0.00 2.44
2053 4152 1.065418 ACCGATGCTTCCAGTTTAGGG 60.065 52.381 0.00 0.00 0.00 3.53
2059 4158 0.108585 ACAACACCGATGCTTCCAGT 59.891 50.000 0.00 0.00 0.00 4.00
2129 4231 3.085952 TCCACATTTCCCATCAGAACC 57.914 47.619 0.00 0.00 0.00 3.62
2224 4332 5.448438 GCATGACAAATTTGTTCAGTCGTA 58.552 37.500 24.02 5.40 42.43 3.43
2225 4333 4.290155 GCATGACAAATTTGTTCAGTCGT 58.710 39.130 24.02 10.09 42.43 4.34
2226 4334 3.670055 GGCATGACAAATTTGTTCAGTCG 59.330 43.478 24.02 15.16 42.43 4.18
2227 4335 4.682860 CAGGCATGACAAATTTGTTCAGTC 59.317 41.667 24.02 17.06 42.43 3.51
2228 4336 4.099881 ACAGGCATGACAAATTTGTTCAGT 59.900 37.500 24.02 13.04 42.43 3.41
2263 4404 2.273370 TCGCCAAATGACTCTACGAC 57.727 50.000 0.00 0.00 0.00 4.34
2696 4929 6.041637 TCAGTACCTTGACAGTAATGTTCACT 59.958 38.462 0.00 0.00 37.16 3.41
2753 4990 2.775384 CCACAGCCCCTAACAATACCTA 59.225 50.000 0.00 0.00 0.00 3.08
2838 5075 4.010349 GGTAGACAAAGGCAAAGCATAGT 58.990 43.478 0.00 0.00 0.00 2.12
2871 5108 2.876550 GGGCGGTAAAATCAGTACCATC 59.123 50.000 1.85 0.00 41.04 3.51
2889 5136 2.113860 ATGCATGGTACGATATGGGC 57.886 50.000 0.00 0.00 0.00 5.36
3178 15245 3.093057 TGAGAGCCTAGACAGGAGAAAC 58.907 50.000 0.00 0.00 45.91 2.78
3276 15351 1.229951 TCCTGGTCCTGGCCAAGAT 60.230 57.895 7.46 0.00 38.18 2.40
3324 15411 7.574217 GCCGTGACCAATTCTAAATTCTTAACA 60.574 37.037 0.00 0.00 0.00 2.41
3376 15470 4.156556 CCACCAAATCAGATCATTTCGTGT 59.843 41.667 12.20 0.34 34.70 4.49
3380 15474 5.649782 ACACCACCAAATCAGATCATTTC 57.350 39.130 0.00 0.00 0.00 2.17
3391 15485 3.303938 TCCATGACAAACACCACCAAAT 58.696 40.909 0.00 0.00 0.00 2.32
3401 15495 5.048504 CCATAGTGCCATATCCATGACAAAC 60.049 44.000 0.00 0.00 33.67 2.93
3473 15571 6.010294 TCGTCGATGTAAGACTTTCTCTTT 57.990 37.500 4.21 0.00 40.04 2.52
3474 15572 5.392165 CCTCGTCGATGTAAGACTTTCTCTT 60.392 44.000 4.21 0.00 42.33 2.85
3475 15573 4.095185 CCTCGTCGATGTAAGACTTTCTCT 59.905 45.833 4.21 0.00 36.53 3.10
3586 15698 6.127083 ACACCCACTTCATTTTCATTTTGAGT 60.127 34.615 0.00 0.00 0.00 3.41
3616 17277 5.057149 GGTCTTCTAGAGCAAACAAGTTGA 58.943 41.667 10.54 0.00 42.03 3.18
3624 17285 2.234908 GCCTGAGGTCTTCTAGAGCAAA 59.765 50.000 0.00 0.00 44.69 3.68
3776 17626 7.732222 TGGGCAATGTTATTATCTTTTTCCT 57.268 32.000 0.00 0.00 0.00 3.36
3807 17659 4.007659 GAGGCCGAAAAGAGTCCATAAAA 58.992 43.478 0.00 0.00 0.00 1.52
3811 17663 1.280457 AGAGGCCGAAAAGAGTCCAT 58.720 50.000 0.00 0.00 0.00 3.41
3813 17665 2.186532 AAAGAGGCCGAAAAGAGTCC 57.813 50.000 0.00 0.00 0.00 3.85
3983 18249 1.406069 GCATCCTGGTACACTGTCAGG 60.406 57.143 9.70 9.70 46.91 3.86
3987 18253 1.055849 TGTGCATCCTGGTACACTGT 58.944 50.000 14.30 0.00 34.14 3.55
4004 18271 7.633281 CGCTAAATCGTTACGTTAAATCATTGT 59.367 33.333 4.24 0.00 0.00 2.71
4005 18272 7.633281 ACGCTAAATCGTTACGTTAAATCATTG 59.367 33.333 4.24 0.00 40.07 2.82
4006 18273 7.678226 ACGCTAAATCGTTACGTTAAATCATT 58.322 30.769 4.24 0.00 40.07 2.57
4007 18274 7.225523 ACGCTAAATCGTTACGTTAAATCAT 57.774 32.000 4.24 0.00 40.07 2.45
4008 18275 6.630676 ACGCTAAATCGTTACGTTAAATCA 57.369 33.333 4.24 0.00 40.07 2.57
4009 18276 8.101510 TGTTACGCTAAATCGTTACGTTAAATC 58.898 33.333 4.24 0.00 42.63 2.17
4010 18277 7.948137 TGTTACGCTAAATCGTTACGTTAAAT 58.052 30.769 4.24 0.00 42.63 1.40
4011 18278 7.326877 TGTTACGCTAAATCGTTACGTTAAA 57.673 32.000 4.24 0.00 42.63 1.52
4012 18279 6.919687 TGTTACGCTAAATCGTTACGTTAA 57.080 33.333 4.24 0.00 42.63 2.01
4013 18280 6.526325 ACATGTTACGCTAAATCGTTACGTTA 59.474 34.615 4.24 0.00 42.63 3.18
4014 18281 5.345741 ACATGTTACGCTAAATCGTTACGTT 59.654 36.000 4.24 0.00 42.63 3.99
4015 18282 4.858692 ACATGTTACGCTAAATCGTTACGT 59.141 37.500 4.24 0.00 42.63 3.57
4016 18283 5.365766 ACATGTTACGCTAAATCGTTACG 57.634 39.130 0.00 0.00 42.63 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.