Multiple sequence alignment - TraesCS5D01G378000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G378000 chr5D 100.000 3969 0 0 1 3969 449853797 449849829 0.000000e+00 7330.0
1 TraesCS5D01G378000 chr5D 87.156 545 57 8 2240 2775 449654129 449653589 1.220000e-169 606.0
2 TraesCS5D01G378000 chr5D 96.309 298 11 0 1 298 221325528 221325231 1.280000e-134 490.0
3 TraesCS5D01G378000 chr5D 98.361 61 1 0 659 719 97387257 97387317 1.510000e-19 108.0
4 TraesCS5D01G378000 chr5B 95.008 1222 49 5 2122 3332 549674148 549672928 0.000000e+00 1908.0
5 TraesCS5D01G378000 chr5B 90.815 773 33 13 816 1575 549675531 549674784 0.000000e+00 1000.0
6 TraesCS5D01G378000 chr5B 93.945 578 15 2 3406 3969 549672909 549672338 0.000000e+00 856.0
7 TraesCS5D01G378000 chr5B 92.571 525 34 5 299 822 549676501 549675981 0.000000e+00 749.0
8 TraesCS5D01G378000 chr5B 78.672 994 133 39 2429 3391 549556876 549555931 4.420000e-164 588.0
9 TraesCS5D01G378000 chr5B 88.941 425 37 6 1677 2092 549674569 549674146 2.110000e-142 516.0
10 TraesCS5D01G378000 chr5A 84.121 1417 152 43 1841 3197 569075195 569073792 0.000000e+00 1303.0
11 TraesCS5D01G378000 chr5A 91.058 671 11 15 816 1470 569076347 569075710 0.000000e+00 861.0
12 TraesCS5D01G378000 chr5A 90.736 367 31 3 299 664 569078228 569077864 1.660000e-133 486.0
13 TraesCS5D01G378000 chr5A 76.596 564 73 26 2854 3391 568628531 568628001 5.090000e-64 255.0
14 TraesCS5D01G378000 chr5A 86.538 156 6 6 3414 3555 569073625 569073471 1.480000e-34 158.0
15 TraesCS5D01G378000 chr5A 96.721 61 2 0 659 719 451417822 451417882 7.020000e-18 102.0
16 TraesCS5D01G378000 chr6A 95.960 297 12 0 2 298 36672097 36671801 2.140000e-132 483.0
17 TraesCS5D01G378000 chr4D 95.638 298 13 0 1 298 307142408 307142705 2.770000e-131 479.0
18 TraesCS5D01G378000 chr4D 94.788 307 14 2 2 307 58171106 58171411 9.980000e-131 477.0
19 TraesCS5D01G378000 chr4D 86.207 116 16 0 1978 2093 477580774 477580659 4.160000e-25 126.0
20 TraesCS5D01G378000 chr4D 85.088 114 17 0 1978 2091 477627366 477627253 2.510000e-22 117.0
21 TraesCS5D01G378000 chr2D 95.349 301 14 0 1 301 116922710 116922410 2.770000e-131 479.0
22 TraesCS5D01G378000 chr2D 98.387 62 1 0 659 720 489410129 489410068 4.190000e-20 110.0
23 TraesCS5D01G378000 chr2B 94.286 315 14 4 1 313 221821181 221820869 2.770000e-131 479.0
24 TraesCS5D01G378000 chr2B 97.015 67 2 0 659 725 38251163 38251229 3.240000e-21 113.0
25 TraesCS5D01G378000 chr1D 95.652 299 12 1 1 298 470476099 470475801 2.770000e-131 479.0
26 TraesCS5D01G378000 chr1D 92.857 70 4 1 659 728 408872461 408872393 2.520000e-17 100.0
27 TraesCS5D01G378000 chr1A 95.638 298 13 0 1 298 305379163 305379460 2.770000e-131 479.0
28 TraesCS5D01G378000 chr3D 94.771 306 14 2 1 304 475000350 475000045 3.590000e-130 475.0
29 TraesCS5D01G378000 chr4A 85.496 131 19 0 1978 2108 684515743 684515613 1.920000e-28 137.0
30 TraesCS5D01G378000 chr4A 86.957 115 15 0 1978 2092 684505329 684505215 3.220000e-26 130.0
31 TraesCS5D01G378000 chr4B 87.719 114 14 0 1978 2091 603167579 603167466 2.490000e-27 134.0
32 TraesCS5D01G378000 chr4B 82.667 150 24 2 1978 2127 603165580 603165433 8.950000e-27 132.0
33 TraesCS5D01G378000 chr4B 83.206 131 22 0 1978 2108 603186899 603186769 1.940000e-23 121.0
34 TraesCS5D01G378000 chr3A 85.981 107 13 2 1365 1470 199707705 199707810 3.240000e-21 113.0
35 TraesCS5D01G378000 chr3A 85.714 84 9 3 454 535 677581577 677581495 7.070000e-13 86.1
36 TraesCS5D01G378000 chr6B 94.203 69 4 0 659 727 377824155 377824087 5.420000e-19 106.0
37 TraesCS5D01G378000 chr2A 98.333 60 1 0 659 718 411088141 411088200 5.420000e-19 106.0
38 TraesCS5D01G378000 chr7A 95.385 65 3 0 659 723 632588210 632588146 1.950000e-18 104.0
39 TraesCS5D01G378000 chr7D 82.727 110 14 4 2690 2795 547295533 547295425 4.220000e-15 93.5
40 TraesCS5D01G378000 chr7D 88.136 59 5 2 2681 2738 547295947 547295890 7.120000e-08 69.4
41 TraesCS5D01G378000 chr7B 93.750 48 3 0 2680 2727 590187108 590187155 5.500000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G378000 chr5D 449849829 449853797 3968 True 7330.0 7330 100.00000 1 3969 1 chr5D.!!$R3 3968
1 TraesCS5D01G378000 chr5D 449653589 449654129 540 True 606.0 606 87.15600 2240 2775 1 chr5D.!!$R2 535
2 TraesCS5D01G378000 chr5B 549672338 549676501 4163 True 1005.8 1908 92.25600 299 3969 5 chr5B.!!$R2 3670
3 TraesCS5D01G378000 chr5B 549555931 549556876 945 True 588.0 588 78.67200 2429 3391 1 chr5B.!!$R1 962
4 TraesCS5D01G378000 chr5A 569073471 569078228 4757 True 702.0 1303 88.11325 299 3555 4 chr5A.!!$R2 3256
5 TraesCS5D01G378000 chr5A 568628001 568628531 530 True 255.0 255 76.59600 2854 3391 1 chr5A.!!$R1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 311 0.611714 TTCTTCACTAGAACCCCGCC 59.388 55.0 0.0 0.0 37.96 6.13 F
1501 2946 0.110295 ATGCACACACACCTTGCCTA 59.890 50.0 0.0 0.0 35.26 3.93 F
1537 2997 0.648441 CTGTACGCACACACACGTTT 59.352 50.0 0.0 0.0 43.35 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1852 3502 0.328258 ACCACGCTAGGCCTGAATTT 59.672 50.0 17.99 0.0 0.00 1.82 R
2310 4004 0.320374 TTACAGTCAACAGCCTCCCG 59.680 55.0 0.00 0.0 0.00 5.14 R
3400 5154 0.324923 ACCCAGTGGCAATGCATGAT 60.325 50.0 9.87 0.0 33.59 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.402049 CGATCATCGTGCTAAGCTAACG 59.598 50.000 0.00 0.00 38.64 3.18
31 32 2.203800 TCATCGTGCTAAGCTAACGG 57.796 50.000 10.16 0.00 37.87 4.44
32 33 1.746787 TCATCGTGCTAAGCTAACGGA 59.253 47.619 10.16 0.71 37.87 4.69
33 34 2.361119 TCATCGTGCTAAGCTAACGGAT 59.639 45.455 10.16 0.00 37.87 4.18
34 35 2.203800 TCGTGCTAAGCTAACGGATG 57.796 50.000 10.16 0.00 37.87 3.51
35 36 1.202371 TCGTGCTAAGCTAACGGATGG 60.202 52.381 10.16 0.00 37.87 3.51
36 37 1.583054 GTGCTAAGCTAACGGATGGG 58.417 55.000 0.00 0.00 0.00 4.00
37 38 1.134491 GTGCTAAGCTAACGGATGGGT 60.134 52.381 0.00 0.00 0.00 4.51
38 39 1.138266 TGCTAAGCTAACGGATGGGTC 59.862 52.381 0.00 0.00 0.00 4.46
39 40 1.138266 GCTAAGCTAACGGATGGGTCA 59.862 52.381 0.00 0.00 0.00 4.02
40 41 2.419574 GCTAAGCTAACGGATGGGTCAA 60.420 50.000 0.00 0.00 0.00 3.18
41 42 2.403252 AAGCTAACGGATGGGTCAAG 57.597 50.000 0.00 0.00 0.00 3.02
42 43 1.276622 AGCTAACGGATGGGTCAAGT 58.723 50.000 0.00 0.00 0.00 3.16
43 44 1.207329 AGCTAACGGATGGGTCAAGTC 59.793 52.381 0.00 0.00 0.00 3.01
44 45 1.066430 GCTAACGGATGGGTCAAGTCA 60.066 52.381 0.00 0.00 0.00 3.41
45 46 2.614481 GCTAACGGATGGGTCAAGTCAA 60.614 50.000 0.00 0.00 0.00 3.18
46 47 2.879103 AACGGATGGGTCAAGTCAAT 57.121 45.000 0.00 0.00 0.00 2.57
47 48 2.403252 ACGGATGGGTCAAGTCAATC 57.597 50.000 0.00 0.00 0.00 2.67
48 49 1.628340 ACGGATGGGTCAAGTCAATCA 59.372 47.619 0.00 0.00 0.00 2.57
49 50 2.009774 CGGATGGGTCAAGTCAATCAC 58.990 52.381 0.00 0.00 0.00 3.06
50 51 2.615240 CGGATGGGTCAAGTCAATCACA 60.615 50.000 0.00 0.00 0.00 3.58
51 52 3.624777 GGATGGGTCAAGTCAATCACAT 58.375 45.455 0.00 0.00 0.00 3.21
52 53 3.629398 GGATGGGTCAAGTCAATCACATC 59.371 47.826 0.00 0.00 34.33 3.06
53 54 3.786368 TGGGTCAAGTCAATCACATCA 57.214 42.857 0.00 0.00 0.00 3.07
54 55 4.305539 TGGGTCAAGTCAATCACATCAT 57.694 40.909 0.00 0.00 0.00 2.45
55 56 4.665451 TGGGTCAAGTCAATCACATCATT 58.335 39.130 0.00 0.00 0.00 2.57
56 57 4.701651 TGGGTCAAGTCAATCACATCATTC 59.298 41.667 0.00 0.00 0.00 2.67
57 58 4.946157 GGGTCAAGTCAATCACATCATTCT 59.054 41.667 0.00 0.00 0.00 2.40
58 59 5.065731 GGGTCAAGTCAATCACATCATTCTC 59.934 44.000 0.00 0.00 0.00 2.87
59 60 5.065731 GGTCAAGTCAATCACATCATTCTCC 59.934 44.000 0.00 0.00 0.00 3.71
60 61 5.645067 GTCAAGTCAATCACATCATTCTCCA 59.355 40.000 0.00 0.00 0.00 3.86
61 62 6.149973 GTCAAGTCAATCACATCATTCTCCAA 59.850 38.462 0.00 0.00 0.00 3.53
62 63 6.149973 TCAAGTCAATCACATCATTCTCCAAC 59.850 38.462 0.00 0.00 0.00 3.77
63 64 4.633126 AGTCAATCACATCATTCTCCAACG 59.367 41.667 0.00 0.00 0.00 4.10
64 65 4.631377 GTCAATCACATCATTCTCCAACGA 59.369 41.667 0.00 0.00 0.00 3.85
65 66 5.295292 GTCAATCACATCATTCTCCAACGAT 59.705 40.000 0.00 0.00 0.00 3.73
66 67 5.295045 TCAATCACATCATTCTCCAACGATG 59.705 40.000 0.00 0.00 40.84 3.84
69 70 4.206477 ACATCATTCTCCAACGATGTGA 57.794 40.909 3.24 0.00 45.05 3.58
70 71 4.774124 ACATCATTCTCCAACGATGTGAT 58.226 39.130 3.24 0.00 45.05 3.06
71 72 4.813161 ACATCATTCTCCAACGATGTGATC 59.187 41.667 3.24 0.00 45.05 2.92
72 73 3.797039 TCATTCTCCAACGATGTGATCC 58.203 45.455 0.00 0.00 0.00 3.36
73 74 2.691409 TTCTCCAACGATGTGATCCC 57.309 50.000 0.00 0.00 0.00 3.85
74 75 1.567357 TCTCCAACGATGTGATCCCA 58.433 50.000 0.00 0.00 0.00 4.37
75 76 2.118679 TCTCCAACGATGTGATCCCAT 58.881 47.619 0.00 0.00 0.00 4.00
76 77 2.505407 TCTCCAACGATGTGATCCCATT 59.495 45.455 0.00 0.00 0.00 3.16
77 78 3.709141 TCTCCAACGATGTGATCCCATTA 59.291 43.478 0.00 0.00 0.00 1.90
78 79 4.163268 TCTCCAACGATGTGATCCCATTAA 59.837 41.667 0.00 0.00 0.00 1.40
79 80 5.047566 TCCAACGATGTGATCCCATTAAT 57.952 39.130 0.00 0.00 0.00 1.40
80 81 5.063204 TCCAACGATGTGATCCCATTAATC 58.937 41.667 0.00 0.00 0.00 1.75
81 82 4.821260 CCAACGATGTGATCCCATTAATCA 59.179 41.667 0.00 0.00 0.00 2.57
82 83 5.299028 CCAACGATGTGATCCCATTAATCAA 59.701 40.000 0.00 0.00 35.04 2.57
83 84 6.183360 CCAACGATGTGATCCCATTAATCAAA 60.183 38.462 0.00 0.00 35.04 2.69
84 85 7.428020 CAACGATGTGATCCCATTAATCAAAT 58.572 34.615 0.00 0.00 34.46 2.32
85 86 6.973843 ACGATGTGATCCCATTAATCAAATG 58.026 36.000 0.00 0.00 43.99 2.32
86 87 6.772233 ACGATGTGATCCCATTAATCAAATGA 59.228 34.615 0.00 0.00 46.81 2.57
87 88 7.449395 ACGATGTGATCCCATTAATCAAATGAT 59.551 33.333 0.00 0.00 46.81 2.45
88 89 8.949177 CGATGTGATCCCATTAATCAAATGATA 58.051 33.333 0.00 0.00 46.81 2.15
91 92 9.645128 TGTGATCCCATTAATCAAATGATAACT 57.355 29.630 0.00 0.00 46.81 2.24
96 97 9.699410 TCCCATTAATCAAATGATAACTCTTGT 57.301 29.630 0.00 0.00 46.81 3.16
97 98 9.956720 CCCATTAATCAAATGATAACTCTTGTC 57.043 33.333 0.00 0.00 46.81 3.18
103 104 7.792374 TCAAATGATAACTCTTGTCTATGGC 57.208 36.000 0.00 0.00 0.00 4.40
104 105 7.568349 TCAAATGATAACTCTTGTCTATGGCT 58.432 34.615 0.00 0.00 0.00 4.75
105 106 8.704668 TCAAATGATAACTCTTGTCTATGGCTA 58.295 33.333 0.00 0.00 0.00 3.93
106 107 8.986847 CAAATGATAACTCTTGTCTATGGCTAG 58.013 37.037 0.00 0.00 0.00 3.42
107 108 6.656632 TGATAACTCTTGTCTATGGCTAGG 57.343 41.667 0.00 0.00 0.00 3.02
108 109 6.373759 TGATAACTCTTGTCTATGGCTAGGA 58.626 40.000 0.00 0.00 0.00 2.94
109 110 6.839134 TGATAACTCTTGTCTATGGCTAGGAA 59.161 38.462 0.00 0.00 0.00 3.36
110 111 7.344612 TGATAACTCTTGTCTATGGCTAGGAAA 59.655 37.037 0.00 0.00 0.00 3.13
111 112 5.346181 ACTCTTGTCTATGGCTAGGAAAC 57.654 43.478 0.00 0.00 0.00 2.78
113 114 5.485708 ACTCTTGTCTATGGCTAGGAAACTT 59.514 40.000 0.00 0.00 43.67 2.66
114 115 6.668283 ACTCTTGTCTATGGCTAGGAAACTTA 59.332 38.462 0.00 0.00 43.67 2.24
115 116 7.180408 ACTCTTGTCTATGGCTAGGAAACTTAA 59.820 37.037 0.00 0.00 43.67 1.85
116 117 7.328737 TCTTGTCTATGGCTAGGAAACTTAAC 58.671 38.462 0.00 0.00 43.67 2.01
117 118 5.985911 TGTCTATGGCTAGGAAACTTAACC 58.014 41.667 0.00 0.00 43.67 2.85
118 119 5.486063 TGTCTATGGCTAGGAAACTTAACCA 59.514 40.000 0.00 0.00 43.67 3.67
119 120 6.157994 TGTCTATGGCTAGGAAACTTAACCAT 59.842 38.462 0.00 0.00 43.99 3.55
120 121 6.706716 GTCTATGGCTAGGAAACTTAACCATC 59.293 42.308 0.00 0.00 42.08 3.51
121 122 5.717119 ATGGCTAGGAAACTTAACCATCT 57.283 39.130 0.00 0.00 40.24 2.90
122 123 5.514500 TGGCTAGGAAACTTAACCATCTT 57.486 39.130 0.00 0.00 43.67 2.40
123 124 5.887754 TGGCTAGGAAACTTAACCATCTTT 58.112 37.500 0.00 0.00 43.67 2.52
124 125 5.710099 TGGCTAGGAAACTTAACCATCTTTG 59.290 40.000 0.00 0.00 43.67 2.77
125 126 5.944007 GGCTAGGAAACTTAACCATCTTTGA 59.056 40.000 0.00 0.00 43.67 2.69
126 127 6.603599 GGCTAGGAAACTTAACCATCTTTGAT 59.396 38.462 0.00 0.00 43.67 2.57
127 128 7.122799 GGCTAGGAAACTTAACCATCTTTGATT 59.877 37.037 0.00 0.00 43.67 2.57
128 129 9.174166 GCTAGGAAACTTAACCATCTTTGATTA 57.826 33.333 0.00 0.00 43.67 1.75
131 132 8.512138 AGGAAACTTAACCATCTTTGATTAACG 58.488 33.333 0.00 0.00 37.44 3.18
132 133 8.508875 GGAAACTTAACCATCTTTGATTAACGA 58.491 33.333 0.00 0.00 0.00 3.85
133 134 9.543018 GAAACTTAACCATCTTTGATTAACGAG 57.457 33.333 0.00 0.00 0.00 4.18
134 135 7.073342 ACTTAACCATCTTTGATTAACGAGC 57.927 36.000 0.00 0.00 0.00 5.03
135 136 6.879458 ACTTAACCATCTTTGATTAACGAGCT 59.121 34.615 0.00 0.00 0.00 4.09
136 137 8.038944 ACTTAACCATCTTTGATTAACGAGCTA 58.961 33.333 0.00 0.00 0.00 3.32
137 138 6.910536 AACCATCTTTGATTAACGAGCTAG 57.089 37.500 0.00 0.00 0.00 3.42
138 139 5.978814 ACCATCTTTGATTAACGAGCTAGT 58.021 37.500 0.00 0.00 0.00 2.57
139 140 6.043411 ACCATCTTTGATTAACGAGCTAGTC 58.957 40.000 0.00 0.00 0.00 2.59
140 141 6.042777 CCATCTTTGATTAACGAGCTAGTCA 58.957 40.000 0.00 0.00 0.00 3.41
141 142 6.535150 CCATCTTTGATTAACGAGCTAGTCAA 59.465 38.462 0.00 0.00 0.00 3.18
142 143 7.254252 CCATCTTTGATTAACGAGCTAGTCAAG 60.254 40.741 0.00 0.00 31.56 3.02
143 144 6.688578 TCTTTGATTAACGAGCTAGTCAAGT 58.311 36.000 0.00 0.00 31.56 3.16
144 145 7.823665 TCTTTGATTAACGAGCTAGTCAAGTA 58.176 34.615 0.00 0.00 31.56 2.24
145 146 7.968956 TCTTTGATTAACGAGCTAGTCAAGTAG 59.031 37.037 0.00 0.00 31.56 2.57
146 147 6.997239 TGATTAACGAGCTAGTCAAGTAGA 57.003 37.500 0.00 0.00 0.00 2.59
147 148 7.017498 TGATTAACGAGCTAGTCAAGTAGAG 57.983 40.000 0.00 0.00 0.00 2.43
148 149 5.814764 TTAACGAGCTAGTCAAGTAGAGG 57.185 43.478 0.00 0.00 0.00 3.69
149 150 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
150 151 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
151 152 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
152 153 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
153 154 4.083537 CGAGCTAGTCAAGTAGAGGCATAG 60.084 50.000 0.00 0.00 0.00 2.23
154 155 4.798882 AGCTAGTCAAGTAGAGGCATAGT 58.201 43.478 0.00 0.00 0.00 2.12
155 156 5.942961 AGCTAGTCAAGTAGAGGCATAGTA 58.057 41.667 0.00 0.00 0.00 1.82
156 157 6.001460 AGCTAGTCAAGTAGAGGCATAGTAG 58.999 44.000 0.00 0.00 0.00 2.57
157 158 5.766174 GCTAGTCAAGTAGAGGCATAGTAGT 59.234 44.000 0.00 0.00 0.00 2.73
158 159 6.293735 GCTAGTCAAGTAGAGGCATAGTAGTG 60.294 46.154 0.00 0.00 0.00 2.74
159 160 5.756918 AGTCAAGTAGAGGCATAGTAGTGA 58.243 41.667 0.00 0.00 0.00 3.41
160 161 5.591067 AGTCAAGTAGAGGCATAGTAGTGAC 59.409 44.000 0.00 0.00 0.00 3.67
161 162 5.357314 GTCAAGTAGAGGCATAGTAGTGACA 59.643 44.000 0.00 0.00 0.00 3.58
162 163 5.357314 TCAAGTAGAGGCATAGTAGTGACAC 59.643 44.000 0.00 0.00 0.00 3.67
163 164 5.118729 AGTAGAGGCATAGTAGTGACACT 57.881 43.478 13.68 13.68 32.60 3.55
164 165 5.511363 AGTAGAGGCATAGTAGTGACACTT 58.489 41.667 14.50 0.00 30.42 3.16
165 166 6.660800 AGTAGAGGCATAGTAGTGACACTTA 58.339 40.000 14.50 1.06 30.42 2.24
166 167 6.768861 AGTAGAGGCATAGTAGTGACACTTAG 59.231 42.308 14.50 1.14 30.42 2.18
167 168 5.511363 AGAGGCATAGTAGTGACACTTAGT 58.489 41.667 14.50 5.66 0.00 2.24
168 169 5.952947 AGAGGCATAGTAGTGACACTTAGTT 59.047 40.000 14.50 0.09 0.00 2.24
169 170 6.437793 AGAGGCATAGTAGTGACACTTAGTTT 59.562 38.462 14.50 0.00 0.00 2.66
170 171 6.398918 AGGCATAGTAGTGACACTTAGTTTG 58.601 40.000 14.50 7.08 0.00 2.93
171 172 6.014499 AGGCATAGTAGTGACACTTAGTTTGT 60.014 38.462 14.50 0.00 0.00 2.83
172 173 6.310711 GGCATAGTAGTGACACTTAGTTTGTC 59.689 42.308 14.50 4.01 43.22 3.18
173 174 7.091443 GCATAGTAGTGACACTTAGTTTGTCT 58.909 38.462 14.50 3.21 43.30 3.41
174 175 8.242053 GCATAGTAGTGACACTTAGTTTGTCTA 58.758 37.037 14.50 5.07 43.30 2.59
177 178 8.179509 AGTAGTGACACTTAGTTTGTCTATGT 57.820 34.615 14.50 0.00 43.30 2.29
178 179 9.293404 AGTAGTGACACTTAGTTTGTCTATGTA 57.707 33.333 14.50 0.00 43.30 2.29
181 182 9.640963 AGTGACACTTAGTTTGTCTATGTATTC 57.359 33.333 1.07 0.00 43.30 1.75
182 183 9.419297 GTGACACTTAGTTTGTCTATGTATTCA 57.581 33.333 0.00 0.00 43.30 2.57
183 184 9.419297 TGACACTTAGTTTGTCTATGTATTCAC 57.581 33.333 4.27 0.00 43.30 3.18
184 185 9.419297 GACACTTAGTTTGTCTATGTATTCACA 57.581 33.333 0.00 0.00 40.30 3.58
185 186 9.204570 ACACTTAGTTTGTCTATGTATTCACAC 57.795 33.333 0.00 0.00 37.54 3.82
186 187 9.203421 CACTTAGTTTGTCTATGTATTCACACA 57.797 33.333 0.00 0.00 37.54 3.72
187 188 9.944376 ACTTAGTTTGTCTATGTATTCACACAT 57.056 29.630 0.00 0.00 41.88 3.21
189 190 9.719355 TTAGTTTGTCTATGTATTCACACATGT 57.281 29.630 0.00 0.00 39.46 3.21
191 192 9.151471 AGTTTGTCTATGTATTCACACATGTAC 57.849 33.333 0.00 0.00 39.46 2.90
192 193 9.151471 GTTTGTCTATGTATTCACACATGTACT 57.849 33.333 0.00 0.00 39.46 2.73
200 201 8.542497 TGTATTCACACATGTACTAAGTTTCC 57.458 34.615 0.00 0.00 0.00 3.13
201 202 6.721571 ATTCACACATGTACTAAGTTTCCG 57.278 37.500 0.00 0.00 0.00 4.30
202 203 4.562082 TCACACATGTACTAAGTTTCCGG 58.438 43.478 0.00 0.00 0.00 5.14
203 204 4.039488 TCACACATGTACTAAGTTTCCGGT 59.961 41.667 0.00 0.00 0.00 5.28
204 205 4.753107 CACACATGTACTAAGTTTCCGGTT 59.247 41.667 0.00 0.00 0.00 4.44
205 206 5.927689 CACACATGTACTAAGTTTCCGGTTA 59.072 40.000 0.00 0.00 0.00 2.85
206 207 6.424509 CACACATGTACTAAGTTTCCGGTTAA 59.575 38.462 0.00 0.00 0.00 2.01
207 208 7.118680 CACACATGTACTAAGTTTCCGGTTAAT 59.881 37.037 0.00 0.00 0.00 1.40
208 209 8.313292 ACACATGTACTAAGTTTCCGGTTAATA 58.687 33.333 0.00 0.00 0.00 0.98
209 210 8.598075 CACATGTACTAAGTTTCCGGTTAATAC 58.402 37.037 0.00 0.00 0.00 1.89
210 211 8.313292 ACATGTACTAAGTTTCCGGTTAATACA 58.687 33.333 0.00 3.81 28.60 2.29
211 212 9.153721 CATGTACTAAGTTTCCGGTTAATACAA 57.846 33.333 0.00 0.00 28.05 2.41
212 213 8.532977 TGTACTAAGTTTCCGGTTAATACAAC 57.467 34.615 0.00 0.00 0.00 3.32
213 214 8.367156 TGTACTAAGTTTCCGGTTAATACAACT 58.633 33.333 0.00 0.00 0.00 3.16
214 215 7.895975 ACTAAGTTTCCGGTTAATACAACTC 57.104 36.000 0.00 0.00 0.00 3.01
215 216 7.674120 ACTAAGTTTCCGGTTAATACAACTCT 58.326 34.615 0.00 0.00 0.00 3.24
216 217 8.806146 ACTAAGTTTCCGGTTAATACAACTCTA 58.194 33.333 0.00 0.00 0.00 2.43
217 218 9.298774 CTAAGTTTCCGGTTAATACAACTCTAG 57.701 37.037 0.00 0.00 0.00 2.43
218 219 6.104665 AGTTTCCGGTTAATACAACTCTAGC 58.895 40.000 0.00 0.00 0.00 3.42
219 220 5.664294 TTCCGGTTAATACAACTCTAGCA 57.336 39.130 0.00 0.00 0.00 3.49
220 221 5.864418 TCCGGTTAATACAACTCTAGCAT 57.136 39.130 0.00 0.00 0.00 3.79
221 222 5.597806 TCCGGTTAATACAACTCTAGCATG 58.402 41.667 0.00 0.00 0.00 4.06
222 223 5.361571 TCCGGTTAATACAACTCTAGCATGA 59.638 40.000 0.00 0.00 0.00 3.07
223 224 6.046593 CCGGTTAATACAACTCTAGCATGAA 58.953 40.000 0.00 0.00 0.00 2.57
224 225 6.706270 CCGGTTAATACAACTCTAGCATGAAT 59.294 38.462 0.00 0.00 0.00 2.57
225 226 7.870954 CCGGTTAATACAACTCTAGCATGAATA 59.129 37.037 0.00 0.00 0.00 1.75
226 227 9.256477 CGGTTAATACAACTCTAGCATGAATAA 57.744 33.333 0.00 0.00 0.00 1.40
283 284 6.422776 AACAACTTTATGATTGCCTCTACG 57.577 37.500 0.00 0.00 0.00 3.51
284 285 4.876107 ACAACTTTATGATTGCCTCTACGG 59.124 41.667 0.00 0.00 0.00 4.02
309 310 2.467566 TTTCTTCACTAGAACCCCGC 57.532 50.000 0.00 0.00 42.50 6.13
310 311 0.611714 TTCTTCACTAGAACCCCGCC 59.388 55.000 0.00 0.00 37.96 6.13
325 326 3.267483 CCCCGCCATCTTATATAAACCG 58.733 50.000 0.00 0.00 0.00 4.44
432 433 6.402983 CCAACACAATTAAGCACAAGCAAAAA 60.403 34.615 0.00 0.00 45.49 1.94
581 582 2.041081 CCCCATTGGAGTTTGAGTGGTA 59.959 50.000 3.62 0.00 35.39 3.25
626 628 6.908870 TTTAGTGAGTACATGTGCATGATC 57.091 37.500 16.62 12.40 41.20 2.92
629 631 4.081254 AGTGAGTACATGTGCATGATCACT 60.081 41.667 26.48 26.48 44.83 3.41
637 639 6.792326 ACATGTGCATGATCACTTCTTTATG 58.208 36.000 17.85 0.41 41.20 1.90
651 653 7.446931 TCACTTCTTTATGAATTACAGCAACCA 59.553 33.333 0.00 0.00 33.71 3.67
702 813 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
706 817 3.028850 TCTCCGACAAGTATTTCCGGAT 58.971 45.455 4.15 0.00 46.53 4.18
730 843 8.940397 ATGGAGGGAGTATAATAAAATGTTGG 57.060 34.615 0.00 0.00 0.00 3.77
786 899 6.208644 ACACTTTTAACTGACATGATTGTGC 58.791 36.000 0.00 0.00 35.79 4.57
908 2330 1.152715 GTACGAGGAGGGAGAGGGG 60.153 68.421 0.00 0.00 0.00 4.79
909 2331 2.392816 TACGAGGAGGGAGAGGGGG 61.393 68.421 0.00 0.00 0.00 5.40
936 2359 8.141298 AGGGAAAATATAAAACAAAATCCCGT 57.859 30.769 0.00 0.00 46.84 5.28
955 2382 4.870991 CCCGTAAAATCCTCACTCTCTTTC 59.129 45.833 0.00 0.00 0.00 2.62
956 2383 4.870991 CCGTAAAATCCTCACTCTCTTTCC 59.129 45.833 0.00 0.00 0.00 3.13
957 2384 5.337652 CCGTAAAATCCTCACTCTCTTTCCT 60.338 44.000 0.00 0.00 0.00 3.36
958 2385 6.166982 CGTAAAATCCTCACTCTCTTTCCTT 58.833 40.000 0.00 0.00 0.00 3.36
959 2386 6.651225 CGTAAAATCCTCACTCTCTTTCCTTT 59.349 38.462 0.00 0.00 0.00 3.11
960 2387 7.148557 CGTAAAATCCTCACTCTCTTTCCTTTC 60.149 40.741 0.00 0.00 0.00 2.62
961 2388 4.835284 ATCCTCACTCTCTTTCCTTTCC 57.165 45.455 0.00 0.00 0.00 3.13
962 2389 3.863086 TCCTCACTCTCTTTCCTTTCCT 58.137 45.455 0.00 0.00 0.00 3.36
963 2390 3.835395 TCCTCACTCTCTTTCCTTTCCTC 59.165 47.826 0.00 0.00 0.00 3.71
1003 2433 3.724209 CCAGAAAATCCCTTATCCCCTCT 59.276 47.826 0.00 0.00 0.00 3.69
1004 2434 4.202514 CCAGAAAATCCCTTATCCCCTCTC 60.203 50.000 0.00 0.00 0.00 3.20
1005 2435 3.984090 AGAAAATCCCTTATCCCCTCTCC 59.016 47.826 0.00 0.00 0.00 3.71
1008 2438 1.536662 CCCTTATCCCCTCTCCCCG 60.537 68.421 0.00 0.00 0.00 5.73
1226 2656 1.544691 TCCTCCGACTCCTTTTTCGAG 59.455 52.381 0.00 0.00 37.43 4.04
1310 2752 2.835895 GCCGAGGAGGAGGAGGAC 60.836 72.222 0.00 0.00 45.00 3.85
1403 2848 1.736645 CAACCTGCCCTACGACGTG 60.737 63.158 11.56 0.43 0.00 4.49
1472 2917 4.116328 TCCGAGGTGAGCGCTTCG 62.116 66.667 19.60 19.60 0.00 3.79
1492 2937 1.228521 CCCCCTTCATGCACACACA 60.229 57.895 0.00 0.00 0.00 3.72
1493 2938 1.526575 CCCCCTTCATGCACACACAC 61.527 60.000 0.00 0.00 0.00 3.82
1494 2939 1.526575 CCCCTTCATGCACACACACC 61.527 60.000 0.00 0.00 0.00 4.16
1495 2940 0.538057 CCCTTCATGCACACACACCT 60.538 55.000 0.00 0.00 0.00 4.00
1496 2941 1.321474 CCTTCATGCACACACACCTT 58.679 50.000 0.00 0.00 0.00 3.50
1501 2946 0.110295 ATGCACACACACCTTGCCTA 59.890 50.000 0.00 0.00 35.26 3.93
1523 2983 6.979238 CCTATTTGCTAGGTACTTGTCTGTAC 59.021 42.308 0.00 0.00 42.01 2.90
1537 2997 0.648441 CTGTACGCACACACACGTTT 59.352 50.000 0.00 0.00 43.35 3.60
1538 2998 1.853510 CTGTACGCACACACACGTTTA 59.146 47.619 0.00 0.00 43.35 2.01
1568 3031 4.038271 ACAGAATGCCTCAATTCTTCCA 57.962 40.909 0.00 0.00 42.92 3.53
1588 3138 2.584391 GCCCTTCAGTCCTGGACGT 61.584 63.158 20.49 7.05 37.67 4.34
1589 3139 1.255667 GCCCTTCAGTCCTGGACGTA 61.256 60.000 20.49 10.33 37.67 3.57
1608 3158 8.471609 TGGACGTAAATGATGTCTAACTGAATA 58.528 33.333 0.00 0.00 42.84 1.75
1642 3221 4.699257 AGAATCTAGTTTGCCTCTTTGCAG 59.301 41.667 0.00 0.00 43.21 4.41
1666 3259 1.543429 GCTTGTGTGAGTAGGTTGGCT 60.543 52.381 0.00 0.00 0.00 4.75
1670 3263 1.377333 GTGAGTAGGTTGGCTGGCC 60.377 63.158 4.43 4.43 0.00 5.36
1682 3320 1.113788 GGCTGGCCATGCTATTTCAA 58.886 50.000 21.48 0.00 35.81 2.69
1692 3330 6.138761 GCCATGCTATTTCAAGTCTTTATCG 58.861 40.000 0.00 0.00 0.00 2.92
1698 3336 8.956426 TGCTATTTCAAGTCTTTATCGGAATTT 58.044 29.630 0.00 0.00 0.00 1.82
1705 3343 6.287107 AGTCTTTATCGGAATTTATGTGCG 57.713 37.500 0.00 0.00 0.00 5.34
1710 3348 8.666573 TCTTTATCGGAATTTATGTGCGTTAAA 58.333 29.630 0.00 0.00 34.76 1.52
1727 3366 1.167851 AAACTGCTACGCATGCACAT 58.832 45.000 19.57 4.84 38.13 3.21
1805 3455 6.001460 TGAAGTTTCGGTCCAATTTAGATGT 58.999 36.000 0.00 0.00 0.00 3.06
1816 3466 7.255139 GGTCCAATTTAGATGTATTTCCTTCCG 60.255 40.741 0.00 0.00 0.00 4.30
1839 3489 5.263185 GCGTAACAATGTATTAGTTGCTGG 58.737 41.667 0.00 0.00 0.00 4.85
1852 3502 2.105821 AGTTGCTGGCCTTGTTACTGTA 59.894 45.455 3.32 0.00 0.00 2.74
1859 3509 5.619981 GCTGGCCTTGTTACTGTAAATTCAG 60.620 44.000 3.32 6.16 40.80 3.02
1872 3522 1.200519 AATTCAGGCCTAGCGTGGTA 58.799 50.000 3.98 0.00 43.44 3.25
1879 3529 0.880718 GCCTAGCGTGGTATTGGCTC 60.881 60.000 0.00 0.00 38.19 4.70
1908 3566 1.566298 GGTTGGAGGGGCAGTCAGAT 61.566 60.000 0.00 0.00 0.00 2.90
1911 3569 1.050988 TGGAGGGGCAGTCAGATAGC 61.051 60.000 0.00 0.00 0.00 2.97
1949 3607 5.121454 GTGTATGCCTTTTCTCTCTGTTCTG 59.879 44.000 0.00 0.00 0.00 3.02
1958 3616 7.875041 CCTTTTCTCTCTGTTCTGAAATGTAGA 59.125 37.037 0.00 0.00 0.00 2.59
1975 3633 5.627499 TGTAGATTCTGTTTTGTGGATGC 57.373 39.130 0.00 0.00 0.00 3.91
1988 3646 3.966979 TGTGGATGCACAGGTCATTTAT 58.033 40.909 16.89 0.00 0.00 1.40
2089 3747 2.233676 TGTTCCATCGCTATGTGAGTGT 59.766 45.455 0.00 0.00 36.97 3.55
2091 3749 4.099419 TGTTCCATCGCTATGTGAGTGTAT 59.901 41.667 0.00 0.00 36.97 2.29
2093 3751 4.871513 TCCATCGCTATGTGAGTGTATTC 58.128 43.478 0.00 0.00 36.97 1.75
2097 3755 5.934935 TCGCTATGTGAGTGTATTCGATA 57.065 39.130 0.00 0.00 36.97 2.92
2098 3756 6.308371 TCGCTATGTGAGTGTATTCGATAA 57.692 37.500 0.00 0.00 36.97 1.75
2099 3757 6.140786 TCGCTATGTGAGTGTATTCGATAAC 58.859 40.000 0.00 0.00 36.97 1.89
2100 3758 6.017357 TCGCTATGTGAGTGTATTCGATAACT 60.017 38.462 0.00 0.00 36.97 2.24
2101 3759 6.637254 CGCTATGTGAGTGTATTCGATAACTT 59.363 38.462 0.00 0.00 0.00 2.66
2102 3760 7.149112 CGCTATGTGAGTGTATTCGATAACTTC 60.149 40.741 0.00 0.00 0.00 3.01
2110 3768 5.175126 GTGTATTCGATAACTTCATGGGACG 59.825 44.000 0.00 0.00 0.00 4.79
2111 3769 4.665833 ATTCGATAACTTCATGGGACGA 57.334 40.909 0.00 0.00 0.00 4.20
2114 3772 5.018539 TCGATAACTTCATGGGACGATTT 57.981 39.130 0.00 0.00 0.00 2.17
2116 3774 5.522460 TCGATAACTTCATGGGACGATTTTC 59.478 40.000 0.00 0.00 0.00 2.29
2130 3788 5.234543 GGACGATTTTCCTTACATACTCTGC 59.765 44.000 0.00 0.00 32.24 4.26
2137 3795 7.859325 TTTCCTTACATACTCTGCATTTACC 57.141 36.000 0.00 0.00 0.00 2.85
2140 3798 7.723324 TCCTTACATACTCTGCATTTACCTAC 58.277 38.462 0.00 0.00 0.00 3.18
2165 3823 1.770658 ACCTGCATAGAATGGCTGCTA 59.229 47.619 0.00 0.00 36.84 3.49
2172 3830 2.119801 AGAATGGCTGCTACCAGTTG 57.880 50.000 0.00 0.00 44.71 3.16
2180 3838 2.927871 GCTGCTACCAGTTGGCATTTTG 60.928 50.000 0.00 0.00 41.26 2.44
2187 3846 4.881920 ACCAGTTGGCATTTTGTATGTTC 58.118 39.130 0.00 0.00 39.32 3.18
2210 3900 5.073144 TCCCTGTCATAGGTCATTAATTCCC 59.927 44.000 3.59 0.00 45.80 3.97
2213 3903 5.940617 TGTCATAGGTCATTAATTCCCAGG 58.059 41.667 3.59 0.00 0.00 4.45
2228 3918 4.870123 TCCCAGGTCAAAATCATTTGTG 57.130 40.909 1.69 0.00 45.02 3.33
2229 3919 3.006752 TCCCAGGTCAAAATCATTTGTGC 59.993 43.478 1.69 0.00 45.02 4.57
2261 3955 8.915057 ATGTAAGCATGCTCTAAAGAATGTAT 57.085 30.769 22.93 2.47 40.33 2.29
2310 4004 3.932289 CGTGGACAGGACGTGAAC 58.068 61.111 0.00 0.00 32.06 3.18
2659 4359 4.092968 GCATGAATCGAACCTCGTTTTAGT 59.907 41.667 0.00 0.00 41.35 2.24
2665 4365 2.928116 CGAACCTCGTTTTAGTGGGATC 59.072 50.000 0.00 0.00 34.72 3.36
2667 4367 4.514401 GAACCTCGTTTTAGTGGGATCAT 58.486 43.478 0.00 0.00 0.00 2.45
2668 4368 4.569719 ACCTCGTTTTAGTGGGATCATT 57.430 40.909 0.00 0.00 0.00 2.57
2742 4445 2.665185 GCTCTGCGGGTGAACGTT 60.665 61.111 0.00 0.00 35.98 3.99
3058 4779 3.381590 CGAAAAGGATCCAAAATCCCCTC 59.618 47.826 15.82 0.00 38.98 4.30
3122 4848 1.328680 GTCTACATGGTCGCATGCTTG 59.671 52.381 17.13 7.87 36.08 4.01
3241 4976 4.749245 TCTCGAGAAATTTTTGCTCCAC 57.251 40.909 14.01 0.00 0.00 4.02
3368 5122 3.402681 CACCGGGCTGATGTCCCT 61.403 66.667 6.32 0.00 41.69 4.20
3371 5125 3.402681 CGGGCTGATGTCCCTGGT 61.403 66.667 0.00 0.00 41.69 4.00
3372 5126 2.273449 GGGCTGATGTCCCTGGTG 59.727 66.667 0.00 0.00 40.66 4.17
3374 5128 1.222936 GGCTGATGTCCCTGGTGAG 59.777 63.158 0.00 0.00 0.00 3.51
3391 5145 2.926242 GTCACCCCAGGTTCCGGA 60.926 66.667 0.00 0.00 31.02 5.14
3392 5146 2.926242 TCACCCCAGGTTCCGGAC 60.926 66.667 1.83 0.00 31.02 4.79
3400 5154 1.918293 AGGTTCCGGACATGGCTCA 60.918 57.895 1.83 0.00 0.00 4.26
3403 5157 0.107703 GTTCCGGACATGGCTCATCA 60.108 55.000 1.83 0.00 0.00 3.07
3560 5413 5.632244 TGAATTTTTACGACTTAAGGGCC 57.368 39.130 7.53 0.00 0.00 5.80
3568 5421 3.105283 ACGACTTAAGGGCCTACTTGAT 58.895 45.455 6.41 0.00 32.02 2.57
3569 5422 3.518303 ACGACTTAAGGGCCTACTTGATT 59.482 43.478 6.41 0.00 32.02 2.57
3570 5423 4.019591 ACGACTTAAGGGCCTACTTGATTT 60.020 41.667 6.41 0.00 32.02 2.17
3571 5424 4.941873 CGACTTAAGGGCCTACTTGATTTT 59.058 41.667 6.41 0.00 32.02 1.82
3572 5425 6.110707 CGACTTAAGGGCCTACTTGATTTTA 58.889 40.000 6.41 0.00 32.02 1.52
3573 5426 6.766467 CGACTTAAGGGCCTACTTGATTTTAT 59.234 38.462 6.41 0.00 32.02 1.40
3610 5463 2.713967 GGCACCATCAAGCGCCAAT 61.714 57.895 2.29 0.00 44.25 3.16
3612 5465 0.670162 GCACCATCAAGCGCCAATAT 59.330 50.000 2.29 0.00 0.00 1.28
3617 5470 4.216042 CACCATCAAGCGCCAATATATCAA 59.784 41.667 2.29 0.00 0.00 2.57
3628 5481 8.155510 AGCGCCAATATATCAATCATCTCATAT 58.844 33.333 2.29 0.00 0.00 1.78
3652 5505 7.139896 TGCAAAGTATAACGTGAATCACAAT 57.860 32.000 14.24 6.20 33.40 2.71
3653 5506 7.020602 TGCAAAGTATAACGTGAATCACAATG 58.979 34.615 14.24 0.00 33.40 2.82
3768 5621 4.260170 AGAATTGAGAACCTGATGAGCAC 58.740 43.478 0.00 0.00 0.00 4.40
3815 5668 8.642935 TGTTTCTGGGAATATGATAAACAACA 57.357 30.769 0.00 0.00 33.73 3.33
3818 5671 9.473007 TTTCTGGGAATATGATAAACAACATGA 57.527 29.630 0.00 0.00 0.00 3.07
3912 5765 0.684535 TCTTGTTGGCATCGACTCCA 59.315 50.000 3.54 3.54 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.402049 CGTTAGCTTAGCACGATGATCG 59.598 50.000 14.01 14.01 46.93 3.69
10 11 2.726760 CCGTTAGCTTAGCACGATGATC 59.273 50.000 16.76 0.00 0.00 2.92
11 12 2.361119 TCCGTTAGCTTAGCACGATGAT 59.639 45.455 16.76 0.00 0.00 2.45
12 13 1.746787 TCCGTTAGCTTAGCACGATGA 59.253 47.619 16.76 5.54 0.00 2.92
13 14 2.203800 TCCGTTAGCTTAGCACGATG 57.796 50.000 16.76 3.48 0.00 3.84
14 15 2.545952 CCATCCGTTAGCTTAGCACGAT 60.546 50.000 16.76 7.23 0.00 3.73
15 16 1.202371 CCATCCGTTAGCTTAGCACGA 60.202 52.381 16.76 5.48 0.00 4.35
16 17 1.209128 CCATCCGTTAGCTTAGCACG 58.791 55.000 7.07 8.58 0.00 5.34
17 18 1.134491 ACCCATCCGTTAGCTTAGCAC 60.134 52.381 7.07 0.00 0.00 4.40
18 19 1.138266 GACCCATCCGTTAGCTTAGCA 59.862 52.381 7.07 0.00 0.00 3.49
19 20 1.138266 TGACCCATCCGTTAGCTTAGC 59.862 52.381 0.00 0.00 0.00 3.09
20 21 3.118738 ACTTGACCCATCCGTTAGCTTAG 60.119 47.826 0.00 0.00 0.00 2.18
21 22 2.835764 ACTTGACCCATCCGTTAGCTTA 59.164 45.455 0.00 0.00 0.00 3.09
22 23 1.628846 ACTTGACCCATCCGTTAGCTT 59.371 47.619 0.00 0.00 0.00 3.74
23 24 1.207329 GACTTGACCCATCCGTTAGCT 59.793 52.381 0.00 0.00 0.00 3.32
24 25 1.066430 TGACTTGACCCATCCGTTAGC 60.066 52.381 0.00 0.00 0.00 3.09
25 26 3.328382 TTGACTTGACCCATCCGTTAG 57.672 47.619 0.00 0.00 0.00 2.34
26 27 3.262151 TGATTGACTTGACCCATCCGTTA 59.738 43.478 0.00 0.00 0.00 3.18
27 28 2.039746 TGATTGACTTGACCCATCCGTT 59.960 45.455 0.00 0.00 0.00 4.44
28 29 1.628340 TGATTGACTTGACCCATCCGT 59.372 47.619 0.00 0.00 0.00 4.69
29 30 2.009774 GTGATTGACTTGACCCATCCG 58.990 52.381 0.00 0.00 0.00 4.18
30 31 3.071874 TGTGATTGACTTGACCCATCC 57.928 47.619 0.00 0.00 0.00 3.51
31 32 4.264253 TGATGTGATTGACTTGACCCATC 58.736 43.478 0.00 0.00 0.00 3.51
32 33 4.305539 TGATGTGATTGACTTGACCCAT 57.694 40.909 0.00 0.00 0.00 4.00
33 34 3.786368 TGATGTGATTGACTTGACCCA 57.214 42.857 0.00 0.00 0.00 4.51
34 35 4.946157 AGAATGATGTGATTGACTTGACCC 59.054 41.667 0.00 0.00 0.00 4.46
35 36 5.065731 GGAGAATGATGTGATTGACTTGACC 59.934 44.000 0.00 0.00 0.00 4.02
36 37 5.645067 TGGAGAATGATGTGATTGACTTGAC 59.355 40.000 0.00 0.00 0.00 3.18
37 38 5.807909 TGGAGAATGATGTGATTGACTTGA 58.192 37.500 0.00 0.00 0.00 3.02
38 39 6.320171 GTTGGAGAATGATGTGATTGACTTG 58.680 40.000 0.00 0.00 0.00 3.16
39 40 5.122869 CGTTGGAGAATGATGTGATTGACTT 59.877 40.000 0.00 0.00 0.00 3.01
40 41 4.633126 CGTTGGAGAATGATGTGATTGACT 59.367 41.667 0.00 0.00 0.00 3.41
41 42 4.631377 TCGTTGGAGAATGATGTGATTGAC 59.369 41.667 0.00 0.00 0.00 3.18
42 43 4.831107 TCGTTGGAGAATGATGTGATTGA 58.169 39.130 0.00 0.00 0.00 2.57
43 44 5.507974 CATCGTTGGAGAATGATGTGATTG 58.492 41.667 8.29 0.00 45.18 2.67
44 45 5.746307 CATCGTTGGAGAATGATGTGATT 57.254 39.130 8.29 0.00 45.18 2.57
50 51 4.384056 GGATCACATCGTTGGAGAATGAT 58.616 43.478 0.00 0.00 38.19 2.45
51 52 3.432186 GGGATCACATCGTTGGAGAATGA 60.432 47.826 0.00 0.00 0.00 2.57
52 53 2.874701 GGGATCACATCGTTGGAGAATG 59.125 50.000 0.00 0.00 0.00 2.67
53 54 2.505407 TGGGATCACATCGTTGGAGAAT 59.495 45.455 0.00 0.00 0.00 2.40
54 55 1.905894 TGGGATCACATCGTTGGAGAA 59.094 47.619 0.00 0.00 0.00 2.87
55 56 1.567357 TGGGATCACATCGTTGGAGA 58.433 50.000 0.00 0.00 0.00 3.71
56 57 2.627515 ATGGGATCACATCGTTGGAG 57.372 50.000 4.06 0.00 0.00 3.86
57 58 4.495690 TTAATGGGATCACATCGTTGGA 57.504 40.909 11.76 0.00 0.00 3.53
58 59 4.821260 TGATTAATGGGATCACATCGTTGG 59.179 41.667 11.76 0.00 0.00 3.77
59 60 6.375945 TTGATTAATGGGATCACATCGTTG 57.624 37.500 11.76 0.00 33.51 4.10
60 61 7.285172 TCATTTGATTAATGGGATCACATCGTT 59.715 33.333 11.76 0.00 43.19 3.85
61 62 6.772233 TCATTTGATTAATGGGATCACATCGT 59.228 34.615 11.76 0.00 43.19 3.73
62 63 7.205737 TCATTTGATTAATGGGATCACATCG 57.794 36.000 11.76 0.00 43.19 3.84
65 66 9.645128 AGTTATCATTTGATTAATGGGATCACA 57.355 29.630 0.00 0.00 43.19 3.58
70 71 9.699410 ACAAGAGTTATCATTTGATTAATGGGA 57.301 29.630 0.00 0.00 43.19 4.37
71 72 9.956720 GACAAGAGTTATCATTTGATTAATGGG 57.043 33.333 0.00 0.00 43.19 4.00
77 78 8.844244 GCCATAGACAAGAGTTATCATTTGATT 58.156 33.333 0.00 0.00 36.05 2.57
78 79 8.216423 AGCCATAGACAAGAGTTATCATTTGAT 58.784 33.333 0.00 0.00 38.51 2.57
79 80 7.568349 AGCCATAGACAAGAGTTATCATTTGA 58.432 34.615 0.00 0.00 0.00 2.69
80 81 7.798596 AGCCATAGACAAGAGTTATCATTTG 57.201 36.000 0.00 0.00 0.00 2.32
81 82 8.153550 CCTAGCCATAGACAAGAGTTATCATTT 58.846 37.037 0.00 0.00 0.00 2.32
82 83 7.510685 TCCTAGCCATAGACAAGAGTTATCATT 59.489 37.037 0.00 0.00 0.00 2.57
83 84 7.013220 TCCTAGCCATAGACAAGAGTTATCAT 58.987 38.462 0.00 0.00 0.00 2.45
84 85 6.373759 TCCTAGCCATAGACAAGAGTTATCA 58.626 40.000 0.00 0.00 0.00 2.15
85 86 6.902771 TCCTAGCCATAGACAAGAGTTATC 57.097 41.667 0.00 0.00 0.00 1.75
86 87 7.345914 AGTTTCCTAGCCATAGACAAGAGTTAT 59.654 37.037 0.00 0.00 0.00 1.89
87 88 6.668283 AGTTTCCTAGCCATAGACAAGAGTTA 59.332 38.462 0.00 0.00 0.00 2.24
88 89 5.485708 AGTTTCCTAGCCATAGACAAGAGTT 59.514 40.000 0.00 0.00 0.00 3.01
89 90 5.026790 AGTTTCCTAGCCATAGACAAGAGT 58.973 41.667 0.00 0.00 0.00 3.24
90 91 5.606348 AGTTTCCTAGCCATAGACAAGAG 57.394 43.478 0.00 0.00 0.00 2.85
91 92 7.328737 GTTAAGTTTCCTAGCCATAGACAAGA 58.671 38.462 0.00 0.00 0.00 3.02
92 93 6.539103 GGTTAAGTTTCCTAGCCATAGACAAG 59.461 42.308 0.00 0.00 0.00 3.16
93 94 6.013206 TGGTTAAGTTTCCTAGCCATAGACAA 60.013 38.462 0.00 0.00 0.00 3.18
94 95 5.486063 TGGTTAAGTTTCCTAGCCATAGACA 59.514 40.000 0.00 0.00 0.00 3.41
95 96 5.985911 TGGTTAAGTTTCCTAGCCATAGAC 58.014 41.667 0.00 0.00 0.00 2.59
96 97 6.615726 AGATGGTTAAGTTTCCTAGCCATAGA 59.384 38.462 0.00 0.00 35.64 1.98
97 98 6.831976 AGATGGTTAAGTTTCCTAGCCATAG 58.168 40.000 0.00 0.00 35.64 2.23
98 99 6.824958 AGATGGTTAAGTTTCCTAGCCATA 57.175 37.500 0.00 0.00 35.64 2.74
99 100 5.717119 AGATGGTTAAGTTTCCTAGCCAT 57.283 39.130 0.00 0.00 37.88 4.40
100 101 5.514500 AAGATGGTTAAGTTTCCTAGCCA 57.486 39.130 0.00 0.00 0.00 4.75
101 102 5.944007 TCAAAGATGGTTAAGTTTCCTAGCC 59.056 40.000 0.00 0.00 0.00 3.93
102 103 7.631717 ATCAAAGATGGTTAAGTTTCCTAGC 57.368 36.000 0.00 0.00 0.00 3.42
105 106 8.512138 CGTTAATCAAAGATGGTTAAGTTTCCT 58.488 33.333 0.00 0.00 41.55 3.36
106 107 8.508875 TCGTTAATCAAAGATGGTTAAGTTTCC 58.491 33.333 0.00 0.00 41.55 3.13
107 108 9.543018 CTCGTTAATCAAAGATGGTTAAGTTTC 57.457 33.333 0.00 0.00 41.55 2.78
108 109 8.021396 GCTCGTTAATCAAAGATGGTTAAGTTT 58.979 33.333 0.00 0.00 41.55 2.66
109 110 7.390718 AGCTCGTTAATCAAAGATGGTTAAGTT 59.609 33.333 0.00 0.00 41.55 2.66
110 111 6.879458 AGCTCGTTAATCAAAGATGGTTAAGT 59.121 34.615 0.00 0.00 41.55 2.24
111 112 7.308782 AGCTCGTTAATCAAAGATGGTTAAG 57.691 36.000 0.00 0.00 41.55 1.85
112 113 8.038944 ACTAGCTCGTTAATCAAAGATGGTTAA 58.961 33.333 0.00 0.00 39.28 2.01
113 114 7.553334 ACTAGCTCGTTAATCAAAGATGGTTA 58.447 34.615 0.00 0.00 30.84 2.85
114 115 6.407202 ACTAGCTCGTTAATCAAAGATGGTT 58.593 36.000 0.00 0.00 33.49 3.67
115 116 5.978814 ACTAGCTCGTTAATCAAAGATGGT 58.021 37.500 0.00 0.00 0.00 3.55
116 117 6.042777 TGACTAGCTCGTTAATCAAAGATGG 58.957 40.000 0.00 0.00 0.00 3.51
117 118 7.276658 ACTTGACTAGCTCGTTAATCAAAGATG 59.723 37.037 0.00 0.00 0.00 2.90
118 119 7.324178 ACTTGACTAGCTCGTTAATCAAAGAT 58.676 34.615 0.00 0.00 0.00 2.40
119 120 6.688578 ACTTGACTAGCTCGTTAATCAAAGA 58.311 36.000 0.00 0.00 0.00 2.52
120 121 6.952935 ACTTGACTAGCTCGTTAATCAAAG 57.047 37.500 0.00 0.00 0.00 2.77
121 122 7.823665 TCTACTTGACTAGCTCGTTAATCAAA 58.176 34.615 0.00 0.00 0.00 2.69
122 123 7.387119 TCTACTTGACTAGCTCGTTAATCAA 57.613 36.000 0.00 0.00 0.00 2.57
123 124 6.038382 CCTCTACTTGACTAGCTCGTTAATCA 59.962 42.308 0.00 0.00 0.00 2.57
124 125 6.432107 CCTCTACTTGACTAGCTCGTTAATC 58.568 44.000 0.00 0.00 0.00 1.75
125 126 5.221087 GCCTCTACTTGACTAGCTCGTTAAT 60.221 44.000 0.00 0.00 0.00 1.40
126 127 4.096081 GCCTCTACTTGACTAGCTCGTTAA 59.904 45.833 0.00 0.00 0.00 2.01
127 128 3.626670 GCCTCTACTTGACTAGCTCGTTA 59.373 47.826 0.00 0.00 0.00 3.18
128 129 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
129 130 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
130 131 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
131 132 4.825085 ACTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
132 133 4.798882 ACTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
133 134 5.766174 ACTACTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 0.00 3.42
134 135 6.993308 TCACTACTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 0.00 2.57
135 136 6.766944 GTCACTACTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 0.00 2.59
136 137 5.591067 GTCACTACTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 0.00 3.41
137 138 5.357314 TGTCACTACTATGCCTCTACTTGAC 59.643 44.000 0.00 0.00 0.00 3.18
138 139 5.357314 GTGTCACTACTATGCCTCTACTTGA 59.643 44.000 0.00 0.00 0.00 3.02
139 140 5.358442 AGTGTCACTACTATGCCTCTACTTG 59.642 44.000 2.87 0.00 0.00 3.16
140 141 5.511363 AGTGTCACTACTATGCCTCTACTT 58.489 41.667 2.87 0.00 0.00 2.24
141 142 5.118729 AGTGTCACTACTATGCCTCTACT 57.881 43.478 2.87 0.00 0.00 2.57
142 143 5.838531 AAGTGTCACTACTATGCCTCTAC 57.161 43.478 5.77 0.00 0.00 2.59
143 144 6.660800 ACTAAGTGTCACTACTATGCCTCTA 58.339 40.000 5.77 0.00 0.00 2.43
144 145 5.511363 ACTAAGTGTCACTACTATGCCTCT 58.489 41.667 5.77 0.00 0.00 3.69
145 146 5.838531 ACTAAGTGTCACTACTATGCCTC 57.161 43.478 5.77 0.00 0.00 4.70
146 147 6.014499 ACAAACTAAGTGTCACTACTATGCCT 60.014 38.462 5.77 0.00 0.00 4.75
147 148 6.164176 ACAAACTAAGTGTCACTACTATGCC 58.836 40.000 5.77 0.00 0.00 4.40
148 149 7.091443 AGACAAACTAAGTGTCACTACTATGC 58.909 38.462 5.77 0.55 46.44 3.14
151 152 9.293404 ACATAGACAAACTAAGTGTCACTACTA 57.707 33.333 5.77 0.00 46.44 1.82
152 153 8.179509 ACATAGACAAACTAAGTGTCACTACT 57.820 34.615 5.77 0.00 46.44 2.57
155 156 9.640963 GAATACATAGACAAACTAAGTGTCACT 57.359 33.333 0.00 0.00 46.44 3.41
156 157 9.419297 TGAATACATAGACAAACTAAGTGTCAC 57.581 33.333 7.26 0.00 46.44 3.67
157 158 9.419297 GTGAATACATAGACAAACTAAGTGTCA 57.581 33.333 7.26 0.00 46.44 3.58
158 159 9.419297 TGTGAATACATAGACAAACTAAGTGTC 57.581 33.333 0.00 0.00 44.75 3.67
159 160 9.204570 GTGTGAATACATAGACAAACTAAGTGT 57.795 33.333 0.00 0.00 39.39 3.55
160 161 9.203421 TGTGTGAATACATAGACAAACTAAGTG 57.797 33.333 0.00 0.00 39.39 3.16
161 162 9.944376 ATGTGTGAATACATAGACAAACTAAGT 57.056 29.630 0.00 0.00 39.40 2.24
163 164 9.719355 ACATGTGTGAATACATAGACAAACTAA 57.281 29.630 0.00 0.00 39.17 2.24
165 166 9.151471 GTACATGTGTGAATACATAGACAAACT 57.849 33.333 9.11 0.00 39.17 2.66
166 167 9.151471 AGTACATGTGTGAATACATAGACAAAC 57.849 33.333 9.11 0.00 39.17 2.93
174 175 9.162764 GGAAACTTAGTACATGTGTGAATACAT 57.837 33.333 9.11 0.00 41.77 2.29
175 176 7.329962 CGGAAACTTAGTACATGTGTGAATACA 59.670 37.037 9.11 0.00 34.63 2.29
176 177 7.201496 CCGGAAACTTAGTACATGTGTGAATAC 60.201 40.741 9.11 0.00 0.00 1.89
177 178 6.814644 CCGGAAACTTAGTACATGTGTGAATA 59.185 38.462 9.11 0.00 0.00 1.75
178 179 5.642063 CCGGAAACTTAGTACATGTGTGAAT 59.358 40.000 9.11 0.00 0.00 2.57
179 180 4.992319 CCGGAAACTTAGTACATGTGTGAA 59.008 41.667 9.11 0.00 0.00 3.18
180 181 4.039488 ACCGGAAACTTAGTACATGTGTGA 59.961 41.667 9.46 0.00 0.00 3.58
181 182 4.312443 ACCGGAAACTTAGTACATGTGTG 58.688 43.478 9.46 0.00 0.00 3.82
182 183 4.612264 ACCGGAAACTTAGTACATGTGT 57.388 40.909 9.46 0.00 0.00 3.72
183 184 7.605410 ATTAACCGGAAACTTAGTACATGTG 57.395 36.000 9.46 0.00 0.00 3.21
184 185 8.313292 TGTATTAACCGGAAACTTAGTACATGT 58.687 33.333 9.46 2.69 0.00 3.21
185 186 8.706492 TGTATTAACCGGAAACTTAGTACATG 57.294 34.615 9.46 0.00 0.00 3.21
186 187 9.154847 GTTGTATTAACCGGAAACTTAGTACAT 57.845 33.333 9.46 0.00 29.53 2.29
187 188 8.367156 AGTTGTATTAACCGGAAACTTAGTACA 58.633 33.333 9.46 10.88 28.23 2.90
188 189 8.763049 AGTTGTATTAACCGGAAACTTAGTAC 57.237 34.615 9.46 8.28 0.00 2.73
189 190 8.806146 AGAGTTGTATTAACCGGAAACTTAGTA 58.194 33.333 9.46 0.00 0.00 1.82
190 191 7.674120 AGAGTTGTATTAACCGGAAACTTAGT 58.326 34.615 9.46 0.00 0.00 2.24
191 192 9.298774 CTAGAGTTGTATTAACCGGAAACTTAG 57.701 37.037 9.46 7.02 0.00 2.18
192 193 7.761249 GCTAGAGTTGTATTAACCGGAAACTTA 59.239 37.037 9.46 0.00 0.00 2.24
193 194 6.592994 GCTAGAGTTGTATTAACCGGAAACTT 59.407 38.462 9.46 0.00 0.00 2.66
194 195 6.104665 GCTAGAGTTGTATTAACCGGAAACT 58.895 40.000 9.46 5.91 0.00 2.66
195 196 5.870978 TGCTAGAGTTGTATTAACCGGAAAC 59.129 40.000 9.46 0.00 0.00 2.78
196 197 6.040209 TGCTAGAGTTGTATTAACCGGAAA 57.960 37.500 9.46 1.61 0.00 3.13
197 198 5.664294 TGCTAGAGTTGTATTAACCGGAA 57.336 39.130 9.46 0.00 0.00 4.30
198 199 5.361571 TCATGCTAGAGTTGTATTAACCGGA 59.638 40.000 9.46 0.00 0.00 5.14
199 200 5.597806 TCATGCTAGAGTTGTATTAACCGG 58.402 41.667 0.00 0.00 0.00 5.28
200 201 7.715265 ATTCATGCTAGAGTTGTATTAACCG 57.285 36.000 0.00 0.00 0.00 4.44
257 258 8.612619 CGTAGAGGCAATCATAAAGTTGTTATT 58.387 33.333 0.00 0.00 0.00 1.40
258 259 7.226720 CCGTAGAGGCAATCATAAAGTTGTTAT 59.773 37.037 0.00 0.00 0.00 1.89
259 260 6.537301 CCGTAGAGGCAATCATAAAGTTGTTA 59.463 38.462 0.00 0.00 0.00 2.41
260 261 5.354234 CCGTAGAGGCAATCATAAAGTTGTT 59.646 40.000 0.00 0.00 0.00 2.83
261 262 4.876107 CCGTAGAGGCAATCATAAAGTTGT 59.124 41.667 0.00 0.00 0.00 3.32
262 263 5.409643 CCGTAGAGGCAATCATAAAGTTG 57.590 43.478 0.00 0.00 0.00 3.16
276 277 5.360591 AGTGAAGAAAATATGCCGTAGAGG 58.639 41.667 0.00 0.00 44.97 3.69
277 278 7.426410 TCTAGTGAAGAAAATATGCCGTAGAG 58.574 38.462 0.00 0.00 0.00 2.43
278 279 7.342769 TCTAGTGAAGAAAATATGCCGTAGA 57.657 36.000 0.00 0.00 0.00 2.59
279 280 7.042658 GGTTCTAGTGAAGAAAATATGCCGTAG 60.043 40.741 0.00 0.00 45.78 3.51
280 281 6.759827 GGTTCTAGTGAAGAAAATATGCCGTA 59.240 38.462 0.00 0.00 45.78 4.02
281 282 5.585047 GGTTCTAGTGAAGAAAATATGCCGT 59.415 40.000 0.00 0.00 45.78 5.68
282 283 5.007724 GGGTTCTAGTGAAGAAAATATGCCG 59.992 44.000 0.00 0.00 45.78 5.69
283 284 5.299531 GGGGTTCTAGTGAAGAAAATATGCC 59.700 44.000 0.00 0.00 45.78 4.40
284 285 5.007724 CGGGGTTCTAGTGAAGAAAATATGC 59.992 44.000 0.00 0.00 45.78 3.14
285 286 5.007724 GCGGGGTTCTAGTGAAGAAAATATG 59.992 44.000 0.00 0.00 45.78 1.78
286 287 5.123936 GCGGGGTTCTAGTGAAGAAAATAT 58.876 41.667 0.00 0.00 45.78 1.28
287 288 4.510571 GCGGGGTTCTAGTGAAGAAAATA 58.489 43.478 0.00 0.00 45.78 1.40
288 289 3.344515 GCGGGGTTCTAGTGAAGAAAAT 58.655 45.455 0.00 0.00 45.78 1.82
289 290 2.551504 GGCGGGGTTCTAGTGAAGAAAA 60.552 50.000 0.00 0.00 45.78 2.29
290 291 1.002773 GGCGGGGTTCTAGTGAAGAAA 59.997 52.381 0.00 0.00 45.78 2.52
291 292 0.611714 GGCGGGGTTCTAGTGAAGAA 59.388 55.000 0.00 0.00 42.07 2.52
292 293 0.543410 TGGCGGGGTTCTAGTGAAGA 60.543 55.000 0.00 0.00 32.15 2.87
293 294 0.541863 ATGGCGGGGTTCTAGTGAAG 59.458 55.000 0.00 0.00 32.15 3.02
294 295 0.539986 GATGGCGGGGTTCTAGTGAA 59.460 55.000 0.00 0.00 0.00 3.18
295 296 0.325296 AGATGGCGGGGTTCTAGTGA 60.325 55.000 0.00 0.00 0.00 3.41
296 297 0.541863 AAGATGGCGGGGTTCTAGTG 59.458 55.000 0.00 0.00 0.00 2.74
297 298 2.170012 TAAGATGGCGGGGTTCTAGT 57.830 50.000 0.00 0.00 0.00 2.57
309 310 5.437060 CCATCCCCGGTTTATATAAGATGG 58.563 45.833 17.85 17.85 42.44 3.51
310 311 5.437060 CCCATCCCCGGTTTATATAAGATG 58.563 45.833 0.00 10.84 0.00 2.90
325 326 3.759815 TCTATCTACTAGCCCATCCCC 57.240 52.381 0.00 0.00 0.00 4.81
432 433 6.542821 TCTCTGAGGAAATAAAACCATGTGT 58.457 36.000 4.59 0.00 0.00 3.72
461 462 7.504926 AGGACACATGATTTTACCTAGGTTA 57.495 36.000 22.11 8.46 0.00 2.85
550 551 0.034574 TCCAATGGGGTTGATGACGG 60.035 55.000 0.00 0.00 40.37 4.79
610 612 5.095145 AGAAGTGATCATGCACATGTACT 57.905 39.130 10.27 10.18 41.19 2.73
626 628 7.538678 GTGGTTGCTGTAATTCATAAAGAAGTG 59.461 37.037 0.00 0.00 40.15 3.16
629 631 6.348950 CCGTGGTTGCTGTAATTCATAAAGAA 60.349 38.462 0.00 0.00 41.28 2.52
637 639 4.634443 AGTATTCCGTGGTTGCTGTAATTC 59.366 41.667 0.00 0.00 0.00 2.17
689 800 3.123804 CTCCATCCGGAAATACTTGTCG 58.876 50.000 9.01 0.00 42.21 4.35
702 813 7.394816 ACATTTTATTATACTCCCTCCATCCG 58.605 38.462 0.00 0.00 0.00 4.18
706 817 6.775629 GCCAACATTTTATTATACTCCCTCCA 59.224 38.462 0.00 0.00 0.00 3.86
813 926 7.382898 TGCTTTCCTCCATTTGGTTTATAAAC 58.617 34.615 18.30 18.30 38.17 2.01
870 2292 1.150081 CCTTATCCTGCTGGCTGGG 59.850 63.158 16.37 8.31 35.98 4.45
871 2293 1.150081 CCCTTATCCTGCTGGCTGG 59.850 63.158 11.48 11.48 36.53 4.85
872 2294 1.150081 CCCCTTATCCTGCTGGCTG 59.850 63.158 4.42 0.00 0.00 4.85
873 2295 0.030092 TACCCCTTATCCTGCTGGCT 60.030 55.000 4.42 0.00 0.00 4.75
874 2296 0.108774 GTACCCCTTATCCTGCTGGC 59.891 60.000 4.42 0.00 0.00 4.85
875 2297 0.393077 CGTACCCCTTATCCTGCTGG 59.607 60.000 2.58 2.58 0.00 4.85
876 2298 1.341531 CTCGTACCCCTTATCCTGCTG 59.658 57.143 0.00 0.00 0.00 4.41
877 2299 1.705873 CTCGTACCCCTTATCCTGCT 58.294 55.000 0.00 0.00 0.00 4.24
908 2330 7.990886 GGGATTTTGTTTTATATTTTCCCTCCC 59.009 37.037 0.00 0.00 37.80 4.30
909 2331 7.709182 CGGGATTTTGTTTTATATTTTCCCTCC 59.291 37.037 0.00 0.00 38.50 4.30
936 2359 7.017651 AGGAAAGGAAAGAGAGTGAGGATTTTA 59.982 37.037 0.00 0.00 0.00 1.52
955 2382 1.208706 GGAGGAGAAGGGAGGAAAGG 58.791 60.000 0.00 0.00 0.00 3.11
956 2383 1.208706 GGGAGGAGAAGGGAGGAAAG 58.791 60.000 0.00 0.00 0.00 2.62
957 2384 0.253207 GGGGAGGAGAAGGGAGGAAA 60.253 60.000 0.00 0.00 0.00 3.13
958 2385 1.396594 GGGGAGGAGAAGGGAGGAA 59.603 63.158 0.00 0.00 0.00 3.36
959 2386 1.460839 TTGGGGAGGAGAAGGGAGGA 61.461 60.000 0.00 0.00 0.00 3.71
960 2387 0.550147 TTTGGGGAGGAGAAGGGAGG 60.550 60.000 0.00 0.00 0.00 4.30
961 2388 0.621082 GTTTGGGGAGGAGAAGGGAG 59.379 60.000 0.00 0.00 0.00 4.30
962 2389 0.845102 GGTTTGGGGAGGAGAAGGGA 60.845 60.000 0.00 0.00 0.00 4.20
963 2390 1.691823 GGTTTGGGGAGGAGAAGGG 59.308 63.158 0.00 0.00 0.00 3.95
1008 2438 4.500116 GGACGGTCGAGGAGCAGC 62.500 72.222 1.43 0.00 0.00 5.25
1037 2467 4.083862 GAGGCGGTGGTGGAGGAC 62.084 72.222 0.00 0.00 0.00 3.85
1472 2917 1.074775 TGTGTGCATGAAGGGGGAC 59.925 57.895 0.00 0.00 0.00 4.46
1501 2946 5.408356 CGTACAGACAAGTACCTAGCAAAT 58.592 41.667 0.00 0.00 40.94 2.32
1523 2983 0.924777 TGAGTAAACGTGTGTGTGCG 59.075 50.000 0.00 0.00 0.00 5.34
1537 2997 3.578282 TGAGGCATTCTGTTGACTGAGTA 59.422 43.478 0.00 0.00 34.21 2.59
1538 2998 2.369860 TGAGGCATTCTGTTGACTGAGT 59.630 45.455 0.00 0.00 34.21 3.41
1589 3139 9.182214 AGCACAATATTCAGTTAGACATCATTT 57.818 29.630 0.00 0.00 0.00 2.32
1608 3158 5.065731 GCAAACTAGATTCTAGCAGCACAAT 59.934 40.000 18.64 0.00 0.00 2.71
1642 3221 1.741770 CCTACTCACACAAGCGGCC 60.742 63.158 0.00 0.00 0.00 6.13
1645 3224 1.148310 CCAACCTACTCACACAAGCG 58.852 55.000 0.00 0.00 0.00 4.68
1666 3259 3.370840 AGACTTGAAATAGCATGGCCA 57.629 42.857 8.56 8.56 0.00 5.36
1670 3263 7.482654 TCCGATAAAGACTTGAAATAGCATG 57.517 36.000 0.00 0.00 0.00 4.06
1682 3320 5.815740 ACGCACATAAATTCCGATAAAGACT 59.184 36.000 0.00 0.00 0.00 3.24
1692 3330 5.399013 AGCAGTTTAACGCACATAAATTCC 58.601 37.500 12.53 0.00 0.00 3.01
1779 3425 6.494893 TCTAAATTGGACCGAAACTTCATG 57.505 37.500 0.00 0.00 0.00 3.07
1805 3455 4.255301 ACATTGTTACGCGGAAGGAAATA 58.745 39.130 12.47 0.00 0.00 1.40
1816 3466 5.263185 CCAGCAACTAATACATTGTTACGC 58.737 41.667 0.00 0.00 0.00 4.42
1839 3489 4.380550 GGCCTGAATTTACAGTAACAAGGC 60.381 45.833 18.42 18.42 36.30 4.35
1852 3502 0.328258 ACCACGCTAGGCCTGAATTT 59.672 50.000 17.99 0.00 0.00 1.82
1859 3509 1.892391 GCCAATACCACGCTAGGCC 60.892 63.158 0.00 0.00 36.17 5.19
1911 3569 3.741344 GGCATACACTATCTAAGCAACCG 59.259 47.826 0.00 0.00 0.00 4.44
1920 3578 6.382570 ACAGAGAGAAAAGGCATACACTATCT 59.617 38.462 0.00 0.00 0.00 1.98
1925 3583 5.121454 CAGAACAGAGAGAAAAGGCATACAC 59.879 44.000 0.00 0.00 0.00 2.90
1949 3607 7.274250 GCATCCACAAAACAGAATCTACATTTC 59.726 37.037 0.00 0.00 0.00 2.17
1975 3633 6.432783 TGTTTCCCTGTTATAAATGACCTGTG 59.567 38.462 0.00 0.00 0.00 3.66
1988 3646 2.038557 GCTCTGGTCTGTTTCCCTGTTA 59.961 50.000 0.00 0.00 0.00 2.41
2089 3747 5.777850 TCGTCCCATGAAGTTATCGAATA 57.222 39.130 0.00 0.00 0.00 1.75
2091 3749 4.665833 ATCGTCCCATGAAGTTATCGAA 57.334 40.909 0.00 0.00 0.00 3.71
2093 3751 5.277345 GGAAAATCGTCCCATGAAGTTATCG 60.277 44.000 0.00 0.00 0.00 2.92
2097 3755 4.034285 AGGAAAATCGTCCCATGAAGTT 57.966 40.909 0.00 0.00 38.59 2.66
2098 3756 3.721087 AGGAAAATCGTCCCATGAAGT 57.279 42.857 0.00 0.00 38.59 3.01
2099 3757 4.941263 TGTAAGGAAAATCGTCCCATGAAG 59.059 41.667 0.00 0.00 38.59 3.02
2100 3758 4.912586 TGTAAGGAAAATCGTCCCATGAA 58.087 39.130 0.00 0.00 38.59 2.57
2101 3759 4.561500 TGTAAGGAAAATCGTCCCATGA 57.438 40.909 0.00 0.00 38.59 3.07
2102 3760 6.055588 AGTATGTAAGGAAAATCGTCCCATG 58.944 40.000 0.00 0.00 38.59 3.66
2110 3768 9.937175 GTAAATGCAGAGTATGTAAGGAAAATC 57.063 33.333 0.00 0.00 0.00 2.17
2111 3769 8.903820 GGTAAATGCAGAGTATGTAAGGAAAAT 58.096 33.333 0.00 0.00 0.00 1.82
2114 3772 7.195374 AGGTAAATGCAGAGTATGTAAGGAA 57.805 36.000 0.00 0.00 0.00 3.36
2116 3774 7.653713 CAGTAGGTAAATGCAGAGTATGTAAGG 59.346 40.741 0.00 0.00 0.00 2.69
2130 3788 3.950397 TGCAGGTTCCAGTAGGTAAATG 58.050 45.455 0.00 0.00 35.89 2.32
2137 3795 4.384056 CCATTCTATGCAGGTTCCAGTAG 58.616 47.826 0.00 0.00 0.00 2.57
2140 3798 1.952296 GCCATTCTATGCAGGTTCCAG 59.048 52.381 0.00 0.00 0.00 3.86
2165 3823 4.262420 GGAACATACAAAATGCCAACTGGT 60.262 41.667 0.00 0.00 37.57 4.00
2172 3830 3.509575 TGACAGGGAACATACAAAATGCC 59.490 43.478 0.00 0.00 0.00 4.40
2210 3900 5.559417 GCAAAGCACAAATGATTTTGACCTG 60.559 40.000 5.52 0.00 41.63 4.00
2213 3903 5.662211 AGCAAAGCACAAATGATTTTGAC 57.338 34.783 5.52 0.00 41.63 3.18
2261 3955 7.083858 GTCAGTCAGCAAAGCATACATTTTTA 58.916 34.615 0.00 0.00 0.00 1.52
2310 4004 0.320374 TTACAGTCAACAGCCTCCCG 59.680 55.000 0.00 0.00 0.00 5.14
2659 4359 2.571212 GACACGGCATTAATGATCCCA 58.429 47.619 19.73 0.00 0.00 4.37
2665 4365 2.535984 GAGACTCGACACGGCATTAATG 59.464 50.000 11.27 11.27 0.00 1.90
2667 4367 1.542472 TGAGACTCGACACGGCATTAA 59.458 47.619 0.00 0.00 0.00 1.40
2668 4368 1.135489 GTGAGACTCGACACGGCATTA 60.135 52.381 0.00 0.00 0.00 1.90
2760 4463 2.904434 ACACCTTCATTAGAACCTCCGT 59.096 45.455 0.00 0.00 0.00 4.69
3058 4779 7.172875 GTCACAAGGAGATTTCAGATCCATATG 59.827 40.741 0.00 0.00 35.45 1.78
3122 4848 1.202336 GGTATTGCACTGCTTGATGCC 60.202 52.381 1.98 3.74 41.33 4.40
3371 5125 2.214216 CGGAACCTGGGGTGACTCA 61.214 63.158 0.00 0.00 39.81 3.41
3372 5126 2.663196 CGGAACCTGGGGTGACTC 59.337 66.667 0.00 0.00 35.34 3.36
3374 5128 2.926242 TCCGGAACCTGGGGTGAC 60.926 66.667 0.00 0.00 35.34 3.67
3391 5145 1.068588 GCAATGCATGATGAGCCATGT 59.931 47.619 0.00 0.00 44.25 3.21
3392 5146 1.605457 GGCAATGCATGATGAGCCATG 60.605 52.381 7.79 0.00 44.97 3.66
3400 5154 0.324923 ACCCAGTGGCAATGCATGAT 60.325 50.000 9.87 0.00 33.59 2.45
3403 5157 1.185315 GTAACCCAGTGGCAATGCAT 58.815 50.000 9.87 0.00 33.59 3.96
3617 5470 8.929746 CACGTTATACTTTGCATATGAGATGAT 58.070 33.333 6.97 0.00 0.00 2.45
3628 5481 6.546972 TTGTGATTCACGTTATACTTTGCA 57.453 33.333 11.97 0.00 37.14 4.08
3637 5490 3.006940 GAGGGCATTGTGATTCACGTTA 58.993 45.455 11.97 0.99 37.14 3.18
3652 5505 1.133199 ACAACTTCCAAATGGAGGGCA 60.133 47.619 15.10 0.00 46.36 5.36
3653 5506 1.273327 CACAACTTCCAAATGGAGGGC 59.727 52.381 15.10 0.00 46.36 5.19
3815 5668 2.503356 GGAGACTCACCCTCAACATCAT 59.497 50.000 4.53 0.00 32.48 2.45
3818 5671 1.905215 CAGGAGACTCACCCTCAACAT 59.095 52.381 4.53 0.00 40.21 2.71
3825 5678 3.454082 AGATTCATTCAGGAGACTCACCC 59.546 47.826 4.53 0.00 40.21 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.