Multiple sequence alignment - TraesCS5D01G377900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G377900 chr5D 100.000 2738 0 0 1 2738 449691450 449694187 0.000000e+00 5057.0
1 TraesCS5D01G377900 chr5D 93.474 475 22 6 988 1461 449649731 449650197 0.000000e+00 697.0
2 TraesCS5D01G377900 chr5D 91.434 502 39 1 958 1459 449667172 449667669 0.000000e+00 686.0
3 TraesCS5D01G377900 chr5D 91.765 255 13 3 1517 1770 449650198 449650445 5.610000e-92 348.0
4 TraesCS5D01G377900 chr5D 80.894 492 40 20 1523 1979 449667677 449668149 3.380000e-89 339.0
5 TraesCS5D01G377900 chr5D 84.880 291 25 7 1771 2042 449650488 449650778 2.690000e-70 276.0
6 TraesCS5D01G377900 chr5D 85.849 212 18 5 2433 2636 449651001 449651208 5.940000e-52 215.0
7 TraesCS5D01G377900 chr5A 92.795 694 44 4 776 1464 568681717 568682409 0.000000e+00 1000.0
8 TraesCS5D01G377900 chr5A 93.686 586 33 3 869 1454 568890342 568890923 0.000000e+00 874.0
9 TraesCS5D01G377900 chr5A 85.078 516 46 20 958 1466 568799898 568800389 5.270000e-137 497.0
10 TraesCS5D01G377900 chr5A 83.364 541 57 13 1517 2042 568890922 568891444 1.150000e-128 470.0
11 TraesCS5D01G377900 chr5A 91.724 290 19 2 1 288 568680097 568680383 5.490000e-107 398.0
12 TraesCS5D01G377900 chr5A 82.058 379 38 13 1585 1953 568808628 568808986 2.060000e-76 296.0
13 TraesCS5D01G377900 chr5A 94.118 153 9 0 285 437 568680741 568680893 1.640000e-57 233.0
14 TraesCS5D01G377900 chr5A 90.123 162 16 0 2186 2347 320214405 320214244 7.680000e-51 211.0
15 TraesCS5D01G377900 chr5A 90.123 162 16 0 2186 2347 688327208 688327047 7.680000e-51 211.0
16 TraesCS5D01G377900 chr5A 87.571 177 21 1 2180 2355 459719569 459719393 1.290000e-48 204.0
17 TraesCS5D01G377900 chr5A 88.793 116 7 5 958 1067 568890229 568890344 1.320000e-28 137.0
18 TraesCS5D01G377900 chr5A 83.471 121 19 1 629 748 100910018 100910138 8.010000e-21 111.0
19 TraesCS5D01G377900 chr5A 87.368 95 12 0 544 638 45987364 45987270 2.880000e-20 110.0
20 TraesCS5D01G377900 chr5B 86.667 690 57 17 776 1449 549587288 549587958 0.000000e+00 732.0
21 TraesCS5D01G377900 chr5B 82.759 435 39 10 1517 1926 549587960 549588383 3.350000e-94 355.0
22 TraesCS5D01G377900 chr5B 90.303 165 15 1 2183 2347 129721947 129721784 5.940000e-52 215.0
23 TraesCS5D01G377900 chr5B 87.500 160 13 2 285 437 549586696 549586855 7.790000e-41 178.0
24 TraesCS5D01G377900 chr6B 83.273 275 33 9 19 288 592225267 592225001 9.800000e-60 241.0
25 TraesCS5D01G377900 chr6B 86.290 124 15 2 629 751 694435266 694435388 1.710000e-27 134.0
26 TraesCS5D01G377900 chr6B 82.166 157 21 7 1832 1982 716923179 716923334 7.960000e-26 128.0
27 TraesCS5D01G377900 chr3D 91.358 162 14 0 2186 2347 87926161 87926000 3.550000e-54 222.0
28 TraesCS5D01G377900 chr3D 78.974 195 32 6 1840 2025 455866934 455867128 1.030000e-24 124.0
29 TraesCS5D01G377900 chr3D 83.929 112 15 3 534 643 22679048 22679158 1.340000e-18 104.0
30 TraesCS5D01G377900 chr3D 85.437 103 12 3 543 643 22767901 22767800 1.340000e-18 104.0
31 TraesCS5D01G377900 chr2D 89.759 166 17 0 2185 2350 87407526 87407361 2.140000e-51 213.0
32 TraesCS5D01G377900 chr2D 89.697 165 17 0 2186 2350 299891554 299891718 7.680000e-51 211.0
33 TraesCS5D01G377900 chr6D 88.757 169 18 1 2186 2353 423084322 423084154 3.570000e-49 206.0
34 TraesCS5D01G377900 chr6D 89.011 91 10 0 540 630 283795860 283795770 2.230000e-21 113.0
35 TraesCS5D01G377900 chr6D 83.471 121 19 1 629 748 166243113 166243233 8.010000e-21 111.0
36 TraesCS5D01G377900 chr4D 88.372 172 18 2 2185 2355 459558639 459558469 3.570000e-49 206.0
37 TraesCS5D01G377900 chr2A 91.954 87 7 0 545 631 15399544 15399630 3.700000e-24 122.0
38 TraesCS5D01G377900 chr2A 78.571 168 31 4 1809 1971 698830247 698830414 3.730000e-19 106.0
39 TraesCS5D01G377900 chr7D 90.805 87 8 0 544 630 270505873 270505959 1.720000e-22 117.0
40 TraesCS5D01G377900 chr7D 82.540 126 19 2 629 751 85031606 85031481 1.040000e-19 108.0
41 TraesCS5D01G377900 chr1D 84.746 118 17 1 645 762 68454185 68454301 1.720000e-22 117.0
42 TraesCS5D01G377900 chr1A 89.247 93 9 1 544 636 389064616 389064525 6.200000e-22 115.0
43 TraesCS5D01G377900 chr1A 83.065 124 20 1 629 751 244975178 244975055 8.010000e-21 111.0
44 TraesCS5D01G377900 chr3B 83.200 125 20 1 628 751 760820281 760820157 2.230000e-21 113.0
45 TraesCS5D01G377900 chr3B 88.421 95 9 2 538 630 830367608 830367514 2.230000e-21 113.0
46 TraesCS5D01G377900 chr3B 88.421 95 9 2 538 630 830656424 830656330 2.230000e-21 113.0
47 TraesCS5D01G377900 chr2B 83.065 124 20 1 629 751 30587705 30587582 8.010000e-21 111.0
48 TraesCS5D01G377900 chr2B 83.065 124 20 1 629 751 667939641 667939518 8.010000e-21 111.0
49 TraesCS5D01G377900 chr2B 78.409 176 33 3 1809 1979 666656538 666656713 2.880000e-20 110.0
50 TraesCS5D01G377900 chr2B 87.879 66 4 4 1463 1527 765453130 765453068 1.050000e-09 75.0
51 TraesCS5D01G377900 chrUn 100.000 42 0 0 1464 1505 345776036 345775995 8.130000e-11 78.7
52 TraesCS5D01G377900 chr4B 100.000 42 0 0 1464 1505 578345171 578345212 8.130000e-11 78.7
53 TraesCS5D01G377900 chr4B 100.000 42 0 0 1464 1505 578402942 578402983 8.130000e-11 78.7
54 TraesCS5D01G377900 chr4B 100.000 42 0 0 1464 1505 578430643 578430684 8.130000e-11 78.7
55 TraesCS5D01G377900 chr4B 100.000 42 0 0 1464 1505 578475221 578475262 8.130000e-11 78.7
56 TraesCS5D01G377900 chr3A 100.000 42 0 0 1463 1504 107731961 107732002 8.130000e-11 78.7
57 TraesCS5D01G377900 chr4A 95.745 47 1 1 1458 1504 43612672 43612717 1.050000e-09 75.0
58 TraesCS5D01G377900 chr4A 93.878 49 3 0 1465 1513 610252636 610252588 1.050000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G377900 chr5D 449691450 449694187 2737 False 5057.000000 5057 100.000000 1 2738 1 chr5D.!!$F1 2737
1 TraesCS5D01G377900 chr5D 449667172 449668149 977 False 512.500000 686 86.164000 958 1979 2 chr5D.!!$F3 1021
2 TraesCS5D01G377900 chr5D 449649731 449651208 1477 False 384.000000 697 88.992000 988 2636 4 chr5D.!!$F2 1648
3 TraesCS5D01G377900 chr5A 568680097 568682409 2312 False 543.666667 1000 92.879000 1 1464 3 chr5A.!!$F4 1463
4 TraesCS5D01G377900 chr5A 568890229 568891444 1215 False 493.666667 874 88.614333 869 2042 3 chr5A.!!$F5 1173
5 TraesCS5D01G377900 chr5B 549586696 549588383 1687 False 421.666667 732 85.642000 285 1926 3 chr5B.!!$F1 1641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.108424 AGAGATCACGAGTTGGCAGC 60.108 55.0 0.00 0.0 0.0 5.25 F
449 1342 0.894642 CATGTGGACATGTGGTGGCA 60.895 55.0 1.15 0.0 46.4 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1033 2133 0.108186 CACCTCTGCATGGCTTCGTA 60.108 55.0 5.87 0.0 0.0 3.43 R
1773 2976 0.317854 GCCAGCAAAGACAACCGTTC 60.318 55.0 0.00 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.221523 TGGACAGGCATAGGGAGAGAT 59.778 52.381 0.00 0.00 0.00 2.75
55 56 2.625790 GCATAGGGAGAGATCACGAGTT 59.374 50.000 0.00 0.00 0.00 3.01
61 62 0.108424 AGAGATCACGAGTTGGCAGC 60.108 55.000 0.00 0.00 0.00 5.25
102 103 8.714179 CCGTCTTGTGATTTACTGTAACATTAA 58.286 33.333 0.00 0.00 0.00 1.40
147 150 9.506018 GTTTGTATGTTTCCCCTAAAGTAGTAA 57.494 33.333 0.00 0.00 0.00 2.24
181 184 4.278419 GGTGGGTCATAATTATGCCAAGAC 59.722 45.833 26.39 21.01 34.02 3.01
278 281 2.892373 TTCTAAACAAAGCGCATCGG 57.108 45.000 11.47 0.00 0.00 4.18
437 808 2.419990 CCTAGATTCGGTTGCATGTGGA 60.420 50.000 0.00 0.00 0.00 4.02
449 1342 0.894642 CATGTGGACATGTGGTGGCA 60.895 55.000 1.15 0.00 46.40 4.92
456 1349 4.722700 ATGTGGTGGCACCTCGGC 62.723 66.667 34.69 22.01 39.58 5.54
471 1364 3.399181 GGCCTGTCCGTGATGGGA 61.399 66.667 0.00 0.00 38.76 4.37
472 1365 2.668632 GCCTGTCCGTGATGGGAA 59.331 61.111 0.00 0.00 37.96 3.97
473 1366 1.450312 GCCTGTCCGTGATGGGAAG 60.450 63.158 0.00 0.00 37.96 3.46
474 1367 1.983224 CCTGTCCGTGATGGGAAGT 59.017 57.895 0.00 0.00 37.96 3.01
475 1368 1.191535 CCTGTCCGTGATGGGAAGTA 58.808 55.000 0.00 0.00 37.96 2.24
476 1369 1.762957 CCTGTCCGTGATGGGAAGTAT 59.237 52.381 0.00 0.00 37.96 2.12
477 1370 2.483714 CCTGTCCGTGATGGGAAGTATG 60.484 54.545 0.00 0.00 37.96 2.39
482 1375 4.989168 GTCCGTGATGGGAAGTATGATAAC 59.011 45.833 0.00 0.00 37.96 1.89
557 1453 8.660295 ATTCATAATATTGTACTCCCTCCGTA 57.340 34.615 0.00 0.00 0.00 4.02
558 1454 8.481492 TTCATAATATTGTACTCCCTCCGTAA 57.519 34.615 0.00 0.00 0.00 3.18
559 1455 8.481492 TCATAATATTGTACTCCCTCCGTAAA 57.519 34.615 0.00 0.00 0.00 2.01
560 1456 8.582437 TCATAATATTGTACTCCCTCCGTAAAG 58.418 37.037 0.00 0.00 0.00 1.85
570 1466 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
571 1467 8.315220 ACTCCCTCCGTAAAGAAATATAAGAA 57.685 34.615 0.00 0.00 0.00 2.52
572 1468 8.202811 ACTCCCTCCGTAAAGAAATATAAGAAC 58.797 37.037 0.00 0.00 0.00 3.01
616 1576 9.662947 AGTAACCTAAACGCTCTTATATTTGTT 57.337 29.630 0.00 0.00 0.00 2.83
680 1695 6.641176 TGTAATGCACGATACAAAGTAGTG 57.359 37.500 6.41 0.00 36.05 2.74
688 1703 7.171848 TGCACGATACAAAGTAGTGTAACATTT 59.828 33.333 0.00 0.00 41.43 2.32
727 1753 7.946655 TCATGATATGATACCACGTCTTTTC 57.053 36.000 0.00 0.00 33.59 2.29
732 1758 9.226606 TGATATGATACCACGTCTTTTCTTTTT 57.773 29.630 0.00 0.00 0.00 1.94
758 1784 9.672086 TTTACTTAATTGTGTGTCATTAACAGC 57.328 29.630 0.00 0.00 38.97 4.40
759 1785 7.510549 ACTTAATTGTGTGTCATTAACAGCT 57.489 32.000 0.00 0.00 38.97 4.24
837 1931 1.034838 CGCGGATCCCAAATTCCCAA 61.035 55.000 6.06 0.00 0.00 4.12
843 1937 1.949799 TCCCAAATTCCCAATGGTGG 58.050 50.000 0.00 0.00 45.53 4.61
845 1939 1.278699 CCCAAATTCCCAATGGTGGTG 59.721 52.381 0.00 0.00 44.30 4.17
846 1940 2.255406 CCAAATTCCCAATGGTGGTGA 58.745 47.619 0.00 0.00 44.30 4.02
871 1965 2.045045 TCAATTCCGGCCTGCCTG 60.045 61.111 6.60 0.00 0.00 4.85
1033 2133 2.964978 GCGGCAGCAAGGATGTTT 59.035 55.556 3.18 0.00 44.35 2.83
1045 2145 2.017049 AGGATGTTTACGAAGCCATGC 58.983 47.619 0.00 0.00 0.00 4.06
1101 2201 2.572284 GACGCCTTCACCGTAGCT 59.428 61.111 0.00 0.00 39.30 3.32
1269 2381 0.595567 GTGTGTGCTTGTACGTCCGA 60.596 55.000 0.00 0.00 0.00 4.55
1346 2458 3.390521 CTGGTGGGCTCTGCGGTA 61.391 66.667 0.00 0.00 0.00 4.02
1353 2465 0.178068 GGGCTCTGCGGTAATCTTCA 59.822 55.000 0.00 0.00 0.00 3.02
1449 2561 7.356641 GTACGATACGAGTATATGTCTTCCA 57.643 40.000 0.00 0.00 0.00 3.53
1452 2564 3.627732 ACGAGTATATGTCTTCCAGCG 57.372 47.619 0.00 0.00 0.00 5.18
1464 2576 5.670485 TGTCTTCCAGCGTTTCATGTATAT 58.330 37.500 0.00 0.00 0.00 0.86
1465 2577 6.811954 TGTCTTCCAGCGTTTCATGTATATA 58.188 36.000 0.00 0.00 0.00 0.86
1466 2578 6.700081 TGTCTTCCAGCGTTTCATGTATATAC 59.300 38.462 5.89 5.89 0.00 1.47
1467 2579 6.924060 GTCTTCCAGCGTTTCATGTATATACT 59.076 38.462 13.89 0.00 0.00 2.12
1468 2580 7.115095 GTCTTCCAGCGTTTCATGTATATACTC 59.885 40.741 13.89 0.00 0.00 2.59
1469 2581 5.779922 TCCAGCGTTTCATGTATATACTCC 58.220 41.667 13.89 0.00 0.00 3.85
1470 2582 4.929808 CCAGCGTTTCATGTATATACTCCC 59.070 45.833 13.89 0.00 0.00 4.30
1471 2583 5.279506 CCAGCGTTTCATGTATATACTCCCT 60.280 44.000 13.89 0.00 0.00 4.20
1472 2584 5.864474 CAGCGTTTCATGTATATACTCCCTC 59.136 44.000 13.89 0.84 0.00 4.30
1473 2585 5.047235 AGCGTTTCATGTATATACTCCCTCC 60.047 44.000 13.89 0.00 0.00 4.30
1474 2586 5.399858 CGTTTCATGTATATACTCCCTCCG 58.600 45.833 13.89 6.35 0.00 4.63
1475 2587 5.048224 CGTTTCATGTATATACTCCCTCCGT 60.048 44.000 13.89 0.00 0.00 4.69
1476 2588 6.149973 CGTTTCATGTATATACTCCCTCCGTA 59.850 42.308 13.89 0.00 0.00 4.02
1477 2589 7.308770 CGTTTCATGTATATACTCCCTCCGTAA 60.309 40.741 13.89 0.00 0.00 3.18
1478 2590 8.362639 GTTTCATGTATATACTCCCTCCGTAAA 58.637 37.037 13.89 0.65 0.00 2.01
1479 2591 8.660295 TTCATGTATATACTCCCTCCGTAAAT 57.340 34.615 13.89 0.00 0.00 1.40
1480 2592 8.660295 TCATGTATATACTCCCTCCGTAAATT 57.340 34.615 13.89 0.00 0.00 1.82
1481 2593 9.758021 TCATGTATATACTCCCTCCGTAAATTA 57.242 33.333 13.89 0.00 0.00 1.40
1491 2603 8.312564 ACTCCCTCCGTAAATTAATATAAGAGC 58.687 37.037 0.00 0.00 0.00 4.09
1492 2604 7.318141 TCCCTCCGTAAATTAATATAAGAGCG 58.682 38.462 0.00 0.00 0.00 5.03
1493 2605 7.039504 TCCCTCCGTAAATTAATATAAGAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
1494 2606 7.601508 CCCTCCGTAAATTAATATAAGAGCGTT 59.398 37.037 0.00 0.00 0.00 4.84
1495 2607 8.985805 CCTCCGTAAATTAATATAAGAGCGTTT 58.014 33.333 0.00 0.00 0.00 3.60
1508 2620 7.988904 ATAAGAGCGTTTAGATCACTGTTAC 57.011 36.000 0.00 0.00 37.82 2.50
1509 2621 5.386958 AGAGCGTTTAGATCACTGTTACA 57.613 39.130 0.00 0.00 37.82 2.41
1510 2622 5.403246 AGAGCGTTTAGATCACTGTTACAG 58.597 41.667 11.21 11.21 37.82 2.74
1511 2623 5.047943 AGAGCGTTTAGATCACTGTTACAGT 60.048 40.000 12.76 12.76 46.51 3.55
1605 2736 2.350057 TGTAGGAGGAGATCGAGGTG 57.650 55.000 0.00 0.00 0.00 4.00
1611 2742 2.503382 GGAGATCGAGGTGGAGGCC 61.503 68.421 0.00 0.00 0.00 5.19
1647 2778 2.652530 GACAAGACGGGGTGCGTA 59.347 61.111 0.00 0.00 0.00 4.42
1763 2925 0.914644 TTCCCATCCTGGAAGAGCTG 59.085 55.000 0.00 0.00 40.96 4.24
1773 2976 3.492309 CCTGGAAGAGCTGCAGTGTATAG 60.492 52.174 16.64 5.68 41.77 1.31
1790 2993 4.688879 TGTATAGAACGGTTGTCTTTGCTG 59.311 41.667 0.00 0.00 0.00 4.41
1795 2998 1.363807 GGTTGTCTTTGCTGGCCAC 59.636 57.895 0.00 0.00 0.00 5.01
1797 3000 2.192861 TTGTCTTTGCTGGCCACCG 61.193 57.895 0.00 0.00 0.00 4.94
1800 3005 1.377202 TCTTTGCTGGCCACCGATC 60.377 57.895 0.00 0.00 0.00 3.69
1845 3063 2.934886 TTCCATGCATCGATCCATCA 57.065 45.000 0.00 0.00 0.00 3.07
1849 3067 3.078837 CCATGCATCGATCCATCATTCA 58.921 45.455 0.00 0.00 0.00 2.57
1852 3070 3.746940 TGCATCGATCCATCATTCATGT 58.253 40.909 0.00 0.00 0.00 3.21
1873 3091 2.686558 TGCTTTGAGATTCGTGTTGC 57.313 45.000 0.00 0.00 0.00 4.17
1874 3092 2.221169 TGCTTTGAGATTCGTGTTGCT 58.779 42.857 0.00 0.00 0.00 3.91
1875 3093 2.618241 TGCTTTGAGATTCGTGTTGCTT 59.382 40.909 0.00 0.00 0.00 3.91
1876 3094 3.066621 TGCTTTGAGATTCGTGTTGCTTT 59.933 39.130 0.00 0.00 0.00 3.51
1877 3095 4.044426 GCTTTGAGATTCGTGTTGCTTTT 58.956 39.130 0.00 0.00 0.00 2.27
1878 3096 4.147133 GCTTTGAGATTCGTGTTGCTTTTC 59.853 41.667 0.00 0.00 0.00 2.29
2010 3254 2.606108 TGCTGATACACGATGACACAC 58.394 47.619 0.00 0.00 0.00 3.82
2011 3255 2.029470 TGCTGATACACGATGACACACA 60.029 45.455 0.00 0.00 0.00 3.72
2012 3256 2.993220 GCTGATACACGATGACACACAA 59.007 45.455 0.00 0.00 0.00 3.33
2013 3257 3.618594 GCTGATACACGATGACACACAAT 59.381 43.478 0.00 0.00 0.00 2.71
2014 3258 4.803613 GCTGATACACGATGACACACAATA 59.196 41.667 0.00 0.00 0.00 1.90
2043 3287 7.703058 ATTAAGATTCATTTTGGAACGAGGT 57.297 32.000 0.00 0.00 0.00 3.85
2060 3371 0.108520 GGTAAATCAGCCACGGACGA 60.109 55.000 0.00 0.00 0.00 4.20
2062 3373 2.277084 GTAAATCAGCCACGGACGATT 58.723 47.619 0.00 0.00 0.00 3.34
2093 3404 4.250305 GATACCCCCATGCGCGGT 62.250 66.667 8.83 8.96 0.00 5.68
2094 3405 2.845317 ATACCCCCATGCGCGGTA 60.845 61.111 8.83 12.60 36.60 4.02
2095 3406 3.173167 ATACCCCCATGCGCGGTAC 62.173 63.158 8.83 0.00 35.02 3.34
2098 3409 2.515991 CCCCATGCGCGGTACAAT 60.516 61.111 8.83 0.00 0.00 2.71
2111 3422 6.183360 TGCGCGGTACAATAATAAAAGTCATT 60.183 34.615 8.83 0.00 0.00 2.57
2126 3437 3.090037 AGTCATTCTAGCTACCGTGTGT 58.910 45.455 0.00 0.00 0.00 3.72
2169 3485 8.092068 TGATTACTTTGACGGTAGAATTTCTCA 58.908 33.333 1.27 0.00 0.00 3.27
2173 3489 8.425577 ACTTTGACGGTAGAATTTCTCATATG 57.574 34.615 1.27 0.00 0.00 1.78
2176 3492 7.770801 TGACGGTAGAATTTCTCATATGTTG 57.229 36.000 1.27 0.00 0.00 3.33
2177 3493 7.552459 TGACGGTAGAATTTCTCATATGTTGA 58.448 34.615 1.27 0.03 0.00 3.18
2187 3503 9.740239 AATTTCTCATATGTTGATGCAATGTAC 57.260 29.630 1.90 0.00 32.72 2.90
2188 3504 8.510243 TTTCTCATATGTTGATGCAATGTACT 57.490 30.769 1.90 0.00 32.72 2.73
2189 3505 7.719778 TCTCATATGTTGATGCAATGTACTC 57.280 36.000 1.90 0.00 32.72 2.59
2190 3506 7.503549 TCTCATATGTTGATGCAATGTACTCT 58.496 34.615 1.90 0.00 32.72 3.24
2191 3507 7.654923 TCTCATATGTTGATGCAATGTACTCTC 59.345 37.037 1.90 0.00 32.72 3.20
2192 3508 7.503549 TCATATGTTGATGCAATGTACTCTCT 58.496 34.615 1.90 0.00 0.00 3.10
2193 3509 7.654923 TCATATGTTGATGCAATGTACTCTCTC 59.345 37.037 1.90 0.00 0.00 3.20
2194 3510 4.507710 TGTTGATGCAATGTACTCTCTCC 58.492 43.478 0.00 0.00 0.00 3.71
2195 3511 3.443099 TGATGCAATGTACTCTCTCCG 57.557 47.619 0.00 0.00 0.00 4.63
2196 3512 2.760650 TGATGCAATGTACTCTCTCCGT 59.239 45.455 0.00 0.00 0.00 4.69
2197 3513 3.195610 TGATGCAATGTACTCTCTCCGTT 59.804 43.478 0.00 0.00 0.00 4.44
2198 3514 3.678056 TGCAATGTACTCTCTCCGTTT 57.322 42.857 0.00 0.00 0.00 3.60
2199 3515 3.585862 TGCAATGTACTCTCTCCGTTTC 58.414 45.455 0.00 0.00 0.00 2.78
2200 3516 3.258372 TGCAATGTACTCTCTCCGTTTCT 59.742 43.478 0.00 0.00 0.00 2.52
2201 3517 4.461431 TGCAATGTACTCTCTCCGTTTCTA 59.539 41.667 0.00 0.00 0.00 2.10
2202 3518 5.047590 TGCAATGTACTCTCTCCGTTTCTAA 60.048 40.000 0.00 0.00 0.00 2.10
2203 3519 5.867716 GCAATGTACTCTCTCCGTTTCTAAA 59.132 40.000 0.00 0.00 0.00 1.85
2204 3520 6.535508 GCAATGTACTCTCTCCGTTTCTAAAT 59.464 38.462 0.00 0.00 0.00 1.40
2205 3521 7.705325 GCAATGTACTCTCTCCGTTTCTAAATA 59.295 37.037 0.00 0.00 0.00 1.40
2206 3522 9.751542 CAATGTACTCTCTCCGTTTCTAAATAT 57.248 33.333 0.00 0.00 0.00 1.28
2288 3604 7.731556 GAATGTACATTCACTCATTTTGCTC 57.268 36.000 33.70 10.39 44.89 4.26
2289 3605 5.627499 TGTACATTCACTCATTTTGCTCC 57.373 39.130 0.00 0.00 0.00 4.70
2290 3606 3.837213 ACATTCACTCATTTTGCTCCG 57.163 42.857 0.00 0.00 0.00 4.63
2291 3607 3.149196 ACATTCACTCATTTTGCTCCGT 58.851 40.909 0.00 0.00 0.00 4.69
2292 3608 4.323417 ACATTCACTCATTTTGCTCCGTA 58.677 39.130 0.00 0.00 0.00 4.02
2293 3609 4.943705 ACATTCACTCATTTTGCTCCGTAT 59.056 37.500 0.00 0.00 0.00 3.06
2294 3610 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2295 3611 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2296 3612 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2297 3613 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2298 3614 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2299 3615 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2300 3616 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2301 3617 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2302 3618 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
2303 3619 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
2304 3620 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
2305 3621 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
2306 3622 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
2307 3623 4.830600 TGCTCCGTATGTAGTCCATATTGA 59.169 41.667 0.00 0.00 38.29 2.57
2308 3624 5.303333 TGCTCCGTATGTAGTCCATATTGAA 59.697 40.000 0.00 0.00 38.29 2.69
2309 3625 6.183360 TGCTCCGTATGTAGTCCATATTGAAA 60.183 38.462 0.00 0.00 38.29 2.69
2310 3626 6.874134 GCTCCGTATGTAGTCCATATTGAAAT 59.126 38.462 0.00 0.00 38.29 2.17
2311 3627 8.033038 GCTCCGTATGTAGTCCATATTGAAATA 58.967 37.037 0.00 0.00 38.29 1.40
2351 3667 9.802039 ATATTTAGGAACAAAAGGAGTACAACA 57.198 29.630 0.00 0.00 0.00 3.33
2352 3668 7.941431 TTTAGGAACAAAAGGAGTACAACAA 57.059 32.000 0.00 0.00 0.00 2.83
2353 3669 7.941431 TTAGGAACAAAAGGAGTACAACAAA 57.059 32.000 0.00 0.00 0.00 2.83
2354 3670 6.451064 AGGAACAAAAGGAGTACAACAAAG 57.549 37.500 0.00 0.00 0.00 2.77
2355 3671 5.949952 AGGAACAAAAGGAGTACAACAAAGT 59.050 36.000 0.00 0.00 0.00 2.66
2366 3682 8.088981 AGGAGTACAACAAAGTAAGTATGTGAG 58.911 37.037 0.00 0.00 0.00 3.51
2367 3683 7.871463 GGAGTACAACAAAGTAAGTATGTGAGT 59.129 37.037 0.00 0.00 0.00 3.41
2368 3684 9.903682 GAGTACAACAAAGTAAGTATGTGAGTA 57.096 33.333 0.00 0.00 0.00 2.59
2393 3709 6.662414 AAGTATGTATGTATGTGTGTGTGC 57.338 37.500 0.00 0.00 0.00 4.57
2394 3710 4.803613 AGTATGTATGTATGTGTGTGTGCG 59.196 41.667 0.00 0.00 0.00 5.34
2395 3711 1.729517 TGTATGTATGTGTGTGTGCGC 59.270 47.619 0.00 0.00 0.00 6.09
2396 3712 0.995728 TATGTATGTGTGTGTGCGCG 59.004 50.000 0.00 0.00 0.00 6.86
2397 3713 2.202171 GTATGTGTGTGTGCGCGC 60.202 61.111 27.26 27.26 36.27 6.86
2398 3714 3.772560 TATGTGTGTGTGCGCGCG 61.773 61.111 28.44 28.44 38.36 6.86
2420 3736 4.641094 CGGGGGCACACACTAATAAATAAA 59.359 41.667 0.00 0.00 0.00 1.40
2427 3743 7.915397 GGCACACACTAATAAATAAAGGACATG 59.085 37.037 0.00 0.00 0.00 3.21
2428 3744 8.673711 GCACACACTAATAAATAAAGGACATGA 58.326 33.333 0.00 0.00 0.00 3.07
2429 3745 9.988350 CACACACTAATAAATAAAGGACATGAC 57.012 33.333 0.00 0.00 0.00 3.06
2430 3746 9.733556 ACACACTAATAAATAAAGGACATGACA 57.266 29.630 0.00 0.00 0.00 3.58
2431 3747 9.988350 CACACTAATAAATAAAGGACATGACAC 57.012 33.333 0.00 0.00 0.00 3.67
2432 3748 9.959721 ACACTAATAAATAAAGGACATGACACT 57.040 29.630 0.00 0.00 0.00 3.55
2446 3762 9.614792 AGGACATGACACTAATAAATAAAGGAC 57.385 33.333 0.00 0.00 0.00 3.85
2447 3763 9.391006 GGACATGACACTAATAAATAAAGGACA 57.609 33.333 0.00 0.00 0.00 4.02
2461 3777 2.483745 GACATGACTCGACCGCGA 59.516 61.111 8.23 0.00 45.71 5.87
2471 3787 0.521867 TCGACCGCGAACGACTAATG 60.522 55.000 19.58 0.00 44.78 1.90
2472 3788 0.795735 CGACCGCGAACGACTAATGT 60.796 55.000 8.23 0.00 43.93 2.71
2473 3789 1.529622 CGACCGCGAACGACTAATGTA 60.530 52.381 8.23 0.00 43.93 2.29
2474 3790 2.724349 GACCGCGAACGACTAATGTAT 58.276 47.619 8.23 0.00 43.93 2.29
2475 3791 3.604543 CGACCGCGAACGACTAATGTATA 60.605 47.826 8.23 0.00 43.93 1.47
2477 3796 4.863491 ACCGCGAACGACTAATGTATAAT 58.137 39.130 8.23 0.00 43.93 1.28
2485 3804 5.584442 ACGACTAATGTATAATGTGTCGCA 58.416 37.500 11.62 0.00 46.19 5.10
2530 3850 3.476646 CAGACAGTGAGCAGCGCG 61.477 66.667 0.00 0.00 0.00 6.86
2561 3881 3.420839 AACTGCTTTGCCGTTATATGC 57.579 42.857 0.00 0.00 34.48 3.14
2576 3898 5.395195 CGTTATATGCGCTACAATTTTGGTG 59.605 40.000 9.73 0.00 0.00 4.17
2617 3941 6.998074 TGTAAAAAGAGGACTATATGGCATGG 59.002 38.462 10.98 2.88 0.00 3.66
2618 3942 5.912149 AAAAGAGGACTATATGGCATGGA 57.088 39.130 10.98 0.00 0.00 3.41
2621 3945 4.352009 AGAGGACTATATGGCATGGAGAG 58.648 47.826 10.98 0.00 0.00 3.20
2623 3947 2.568956 GGACTATATGGCATGGAGAGCA 59.431 50.000 10.98 0.00 0.00 4.26
2636 3960 5.366460 CATGGAGAGCAACTCATCTACATT 58.634 41.667 11.83 0.00 43.22 2.71
2637 3961 5.426689 TGGAGAGCAACTCATCTACATTT 57.573 39.130 11.83 0.00 46.54 2.32
2638 3962 5.809001 TGGAGAGCAACTCATCTACATTTT 58.191 37.500 11.83 0.00 46.54 1.82
2639 3963 6.240894 TGGAGAGCAACTCATCTACATTTTT 58.759 36.000 11.83 0.00 46.54 1.94
2656 3980 2.068834 TTTTTCCTACCGGGCAAACA 57.931 45.000 6.32 0.00 30.37 2.83
2657 3981 1.320507 TTTTCCTACCGGGCAAACAC 58.679 50.000 6.32 0.00 34.39 3.32
2658 3982 0.537828 TTTCCTACCGGGCAAACACC 60.538 55.000 6.32 0.00 34.39 4.16
2665 3989 3.466881 GGGCAAACACCCCTTTCC 58.533 61.111 0.00 0.00 45.00 3.13
2666 3990 1.458588 GGGCAAACACCCCTTTCCA 60.459 57.895 0.00 0.00 45.00 3.53
2667 3991 0.835971 GGGCAAACACCCCTTTCCAT 60.836 55.000 0.00 0.00 45.00 3.41
2668 3992 1.055849 GGCAAACACCCCTTTCCATT 58.944 50.000 0.00 0.00 0.00 3.16
2669 3993 2.252714 GGCAAACACCCCTTTCCATTA 58.747 47.619 0.00 0.00 0.00 1.90
2670 3994 2.635427 GGCAAACACCCCTTTCCATTAA 59.365 45.455 0.00 0.00 0.00 1.40
2671 3995 3.263170 GGCAAACACCCCTTTCCATTAAT 59.737 43.478 0.00 0.00 0.00 1.40
2672 3996 4.503910 GCAAACACCCCTTTCCATTAATC 58.496 43.478 0.00 0.00 0.00 1.75
2673 3997 4.020662 GCAAACACCCCTTTCCATTAATCA 60.021 41.667 0.00 0.00 0.00 2.57
2674 3998 5.478407 CAAACACCCCTTTCCATTAATCAC 58.522 41.667 0.00 0.00 0.00 3.06
2675 3999 4.396357 ACACCCCTTTCCATTAATCACA 57.604 40.909 0.00 0.00 0.00 3.58
2676 4000 4.946646 ACACCCCTTTCCATTAATCACAT 58.053 39.130 0.00 0.00 0.00 3.21
2677 4001 4.956075 ACACCCCTTTCCATTAATCACATC 59.044 41.667 0.00 0.00 0.00 3.06
2678 4002 4.955450 CACCCCTTTCCATTAATCACATCA 59.045 41.667 0.00 0.00 0.00 3.07
2679 4003 5.421693 CACCCCTTTCCATTAATCACATCAA 59.578 40.000 0.00 0.00 0.00 2.57
2680 4004 5.422012 ACCCCTTTCCATTAATCACATCAAC 59.578 40.000 0.00 0.00 0.00 3.18
2681 4005 5.450412 CCCCTTTCCATTAATCACATCAACG 60.450 44.000 0.00 0.00 0.00 4.10
2682 4006 5.450412 CCCTTTCCATTAATCACATCAACGG 60.450 44.000 0.00 0.00 0.00 4.44
2683 4007 5.356751 CCTTTCCATTAATCACATCAACGGA 59.643 40.000 0.00 0.00 0.00 4.69
2684 4008 6.127758 CCTTTCCATTAATCACATCAACGGAA 60.128 38.462 0.00 0.00 0.00 4.30
2685 4009 6.825944 TTCCATTAATCACATCAACGGAAA 57.174 33.333 0.00 0.00 0.00 3.13
2686 4010 7.403312 TTCCATTAATCACATCAACGGAAAT 57.597 32.000 0.00 0.00 0.00 2.17
2687 4011 8.512966 TTCCATTAATCACATCAACGGAAATA 57.487 30.769 0.00 0.00 0.00 1.40
2688 4012 8.690203 TCCATTAATCACATCAACGGAAATAT 57.310 30.769 0.00 0.00 0.00 1.28
2689 4013 9.130661 TCCATTAATCACATCAACGGAAATATT 57.869 29.630 0.00 0.00 0.00 1.28
2690 4014 9.398170 CCATTAATCACATCAACGGAAATATTC 57.602 33.333 0.00 0.00 0.00 1.75
2691 4015 9.106286 CATTAATCACATCAACGGAAATATTCG 57.894 33.333 0.00 0.00 0.00 3.34
2692 4016 6.918892 AATCACATCAACGGAAATATTCGA 57.081 33.333 3.79 0.00 0.00 3.71
2693 4017 5.966636 TCACATCAACGGAAATATTCGAG 57.033 39.130 3.79 0.00 0.00 4.04
2694 4018 5.416083 TCACATCAACGGAAATATTCGAGT 58.584 37.500 3.79 0.00 0.00 4.18
2695 4019 6.566141 TCACATCAACGGAAATATTCGAGTA 58.434 36.000 3.79 0.00 0.00 2.59
2696 4020 6.474427 TCACATCAACGGAAATATTCGAGTAC 59.526 38.462 3.79 0.00 0.00 2.73
2697 4021 6.254804 CACATCAACGGAAATATTCGAGTACA 59.745 38.462 3.79 0.00 0.00 2.90
2698 4022 6.984474 ACATCAACGGAAATATTCGAGTACAT 59.016 34.615 3.79 0.00 0.00 2.29
2699 4023 6.822073 TCAACGGAAATATTCGAGTACATG 57.178 37.500 3.79 0.00 0.00 3.21
2700 4024 6.566141 TCAACGGAAATATTCGAGTACATGA 58.434 36.000 0.00 0.00 0.00 3.07
2701 4025 6.474427 TCAACGGAAATATTCGAGTACATGAC 59.526 38.462 0.00 0.00 0.00 3.06
2702 4026 5.898174 ACGGAAATATTCGAGTACATGACA 58.102 37.500 0.00 0.00 0.00 3.58
2703 4027 5.977725 ACGGAAATATTCGAGTACATGACAG 59.022 40.000 0.00 0.00 0.00 3.51
2704 4028 5.977725 CGGAAATATTCGAGTACATGACAGT 59.022 40.000 0.00 0.00 0.00 3.55
2705 4029 6.475727 CGGAAATATTCGAGTACATGACAGTT 59.524 38.462 0.00 0.00 0.00 3.16
2706 4030 7.306051 CGGAAATATTCGAGTACATGACAGTTC 60.306 40.741 0.00 0.00 0.00 3.01
2707 4031 7.491372 GGAAATATTCGAGTACATGACAGTTCA 59.509 37.037 0.00 0.00 35.73 3.18
2708 4032 7.993821 AATATTCGAGTACATGACAGTTCAG 57.006 36.000 0.00 0.00 34.35 3.02
2709 4033 5.644977 ATTCGAGTACATGACAGTTCAGA 57.355 39.130 0.00 0.00 34.35 3.27
2710 4034 4.421033 TCGAGTACATGACAGTTCAGAC 57.579 45.455 0.00 0.00 34.35 3.51
2711 4035 4.072839 TCGAGTACATGACAGTTCAGACT 58.927 43.478 0.00 0.00 34.35 3.24
2712 4036 5.243207 TCGAGTACATGACAGTTCAGACTA 58.757 41.667 0.00 0.00 34.35 2.59
2713 4037 5.704053 TCGAGTACATGACAGTTCAGACTAA 59.296 40.000 0.00 0.00 34.35 2.24
2714 4038 6.024664 CGAGTACATGACAGTTCAGACTAAG 58.975 44.000 0.00 0.00 34.35 2.18
2715 4039 5.715070 AGTACATGACAGTTCAGACTAAGC 58.285 41.667 0.00 0.00 34.35 3.09
2716 4040 4.607293 ACATGACAGTTCAGACTAAGCA 57.393 40.909 0.00 0.00 34.35 3.91
2717 4041 4.960938 ACATGACAGTTCAGACTAAGCAA 58.039 39.130 0.00 0.00 34.35 3.91
2718 4042 4.993584 ACATGACAGTTCAGACTAAGCAAG 59.006 41.667 0.00 0.00 34.35 4.01
2719 4043 3.995199 TGACAGTTCAGACTAAGCAAGG 58.005 45.455 0.00 0.00 33.90 3.61
2720 4044 3.641436 TGACAGTTCAGACTAAGCAAGGA 59.359 43.478 0.00 0.00 33.90 3.36
2721 4045 4.100963 TGACAGTTCAGACTAAGCAAGGAA 59.899 41.667 0.00 0.00 33.90 3.36
2722 4046 4.381411 ACAGTTCAGACTAAGCAAGGAAC 58.619 43.478 0.00 0.00 33.90 3.62
2723 4047 4.101741 ACAGTTCAGACTAAGCAAGGAACT 59.898 41.667 0.00 0.00 43.99 3.01
2724 4048 4.636249 AGTTCAGACTAAGCAAGGAACTG 58.364 43.478 0.00 0.00 42.22 3.16
2725 4049 4.345257 AGTTCAGACTAAGCAAGGAACTGA 59.655 41.667 0.00 0.00 42.22 3.41
2726 4050 4.955811 TCAGACTAAGCAAGGAACTGAA 57.044 40.909 0.00 0.00 40.86 3.02
2727 4051 4.632153 TCAGACTAAGCAAGGAACTGAAC 58.368 43.478 0.00 0.00 40.86 3.18
2728 4052 4.345257 TCAGACTAAGCAAGGAACTGAACT 59.655 41.667 0.00 0.00 40.86 3.01
2729 4053 5.538813 TCAGACTAAGCAAGGAACTGAACTA 59.461 40.000 0.00 0.00 40.86 2.24
2730 4054 5.866633 CAGACTAAGCAAGGAACTGAACTAG 59.133 44.000 0.00 0.00 40.86 2.57
2731 4055 5.046950 AGACTAAGCAAGGAACTGAACTAGG 60.047 44.000 0.00 0.00 40.86 3.02
2732 4056 3.425162 AAGCAAGGAACTGAACTAGGG 57.575 47.619 0.00 0.00 40.86 3.53
2733 4057 2.621070 AGCAAGGAACTGAACTAGGGA 58.379 47.619 0.00 0.00 40.86 4.20
2734 4058 3.185455 AGCAAGGAACTGAACTAGGGAT 58.815 45.455 0.00 0.00 40.86 3.85
2735 4059 4.362677 AGCAAGGAACTGAACTAGGGATA 58.637 43.478 0.00 0.00 40.86 2.59
2736 4060 4.783227 AGCAAGGAACTGAACTAGGGATAA 59.217 41.667 0.00 0.00 40.86 1.75
2737 4061 5.104735 AGCAAGGAACTGAACTAGGGATAAG 60.105 44.000 0.00 0.00 40.86 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.937149 TGTCCATCGACTACTCTCTTCG 59.063 50.000 0.00 0.00 39.94 3.79
13 14 3.283751 CCTGTCCATCGACTACTCTCTT 58.716 50.000 0.00 0.00 39.94 2.85
24 25 0.319728 CTCCCTATGCCTGTCCATCG 59.680 60.000 0.00 0.00 0.00 3.84
47 48 1.887242 GTGTGCTGCCAACTCGTGA 60.887 57.895 0.00 0.00 0.00 4.35
55 56 2.153645 CTTGACTAATGTGTGCTGCCA 58.846 47.619 0.00 0.00 0.00 4.92
61 62 2.688507 AGACGGCTTGACTAATGTGTG 58.311 47.619 0.00 0.00 0.00 3.82
158 161 4.278419 GTCTTGGCATAATTATGACCCACC 59.722 45.833 25.30 17.28 41.08 4.61
219 222 7.869429 TCGTAGTTACCTTTGTTCCTAGAAAAG 59.131 37.037 0.00 0.00 0.00 2.27
255 258 4.402583 CGATGCGCTTTGTTTAGAAATGA 58.597 39.130 9.73 0.00 0.00 2.57
270 273 0.167908 TTCAATGTGTTCCGATGCGC 59.832 50.000 0.00 0.00 0.00 6.09
278 281 3.146066 TGGCCACTAGTTCAATGTGTTC 58.854 45.455 0.00 0.00 0.00 3.18
316 680 0.554305 TGGCAGCAGGGATGATGAAT 59.446 50.000 0.00 0.00 0.00 2.57
318 682 1.276859 ACTGGCAGCAGGGATGATGA 61.277 55.000 15.89 0.00 0.00 2.92
414 785 0.583438 CATGCAACCGAATCTAGGCG 59.417 55.000 0.00 0.00 0.00 5.52
437 808 2.032528 CGAGGTGCCACCACATGT 59.967 61.111 17.80 0.00 43.88 3.21
456 1349 1.191535 TACTTCCCATCACGGACAGG 58.808 55.000 0.00 0.00 36.56 4.00
457 1350 2.430694 TCATACTTCCCATCACGGACAG 59.569 50.000 0.00 0.00 36.56 3.51
462 1355 6.223120 TCATGTTATCATACTTCCCATCACG 58.777 40.000 0.00 0.00 32.47 4.35
534 1430 8.481492 TTTACGGAGGGAGTACAATATTATGA 57.519 34.615 0.00 0.00 0.00 2.15
544 1440 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
549 1445 8.904099 ATGTTCTTATATTTCTTTACGGAGGG 57.096 34.615 0.00 0.00 0.00 4.30
599 1559 9.490379 CCCTCTATAAACAAATATAAGAGCGTT 57.510 33.333 0.00 0.00 0.00 4.84
601 1561 9.360093 CTCCCTCTATAAACAAATATAAGAGCG 57.640 37.037 0.00 0.00 0.00 5.03
732 1758 9.672086 GCTGTTAATGACACACAATTAAGTAAA 57.328 29.630 0.00 0.00 33.82 2.01
755 1781 8.406297 TGCCGTAATGAGAGTATATATTAGCTG 58.594 37.037 0.00 0.00 0.00 4.24
756 1782 8.407064 GTGCCGTAATGAGAGTATATATTAGCT 58.593 37.037 0.00 0.00 0.00 3.32
757 1783 8.188799 TGTGCCGTAATGAGAGTATATATTAGC 58.811 37.037 0.00 0.00 0.00 3.09
758 1784 9.504710 GTGTGCCGTAATGAGAGTATATATTAG 57.495 37.037 0.00 0.00 0.00 1.73
759 1785 9.016438 TGTGTGCCGTAATGAGAGTATATATTA 57.984 33.333 0.00 0.00 0.00 0.98
762 1788 6.887626 TGTGTGCCGTAATGAGAGTATATA 57.112 37.500 0.00 0.00 0.00 0.86
764 1790 5.585820 TTGTGTGCCGTAATGAGAGTATA 57.414 39.130 0.00 0.00 0.00 1.47
768 1794 4.481930 TTTTTGTGTGCCGTAATGAGAG 57.518 40.909 0.00 0.00 0.00 3.20
770 1796 4.793071 TGATTTTTGTGTGCCGTAATGAG 58.207 39.130 0.00 0.00 0.00 2.90
771 1797 4.837896 TGATTTTTGTGTGCCGTAATGA 57.162 36.364 0.00 0.00 0.00 2.57
772 1798 5.896922 TTTGATTTTTGTGTGCCGTAATG 57.103 34.783 0.00 0.00 0.00 1.90
773 1799 6.306837 CGTATTTGATTTTTGTGTGCCGTAAT 59.693 34.615 0.00 0.00 0.00 1.89
774 1800 5.625721 CGTATTTGATTTTTGTGTGCCGTAA 59.374 36.000 0.00 0.00 0.00 3.18
837 1931 3.249189 AGGCCGTGTCACCACCAT 61.249 61.111 10.67 0.00 38.41 3.55
843 1937 1.635663 CGGAATTGAGGCCGTGTCAC 61.636 60.000 0.00 0.00 42.49 3.67
845 1939 2.106683 CCGGAATTGAGGCCGTGTC 61.107 63.158 0.00 0.00 45.85 3.67
846 1940 2.046314 CCGGAATTGAGGCCGTGT 60.046 61.111 0.00 0.00 45.85 4.49
856 1950 1.454479 CATCAGGCAGGCCGGAATT 60.454 57.895 16.80 0.00 43.07 2.17
871 1965 3.393472 CCAGTAGAGGCCAAGCATC 57.607 57.895 5.01 0.00 39.81 3.91
1033 2133 0.108186 CACCTCTGCATGGCTTCGTA 60.108 55.000 5.87 0.00 0.00 3.43
1045 2145 1.507141 GAACGGTTGTGCCACCTCTG 61.507 60.000 0.00 0.00 36.97 3.35
1137 2237 1.198713 GGACCATGAAGGAGCAGAGA 58.801 55.000 0.00 0.00 41.22 3.10
1346 2458 2.125106 GAGCCGCCCGTGAAGATT 60.125 61.111 0.00 0.00 0.00 2.40
1376 2488 3.481009 GGTGATATCCAGCGAGACG 57.519 57.895 0.00 0.00 33.20 4.18
1449 2561 5.047235 GGAGGGAGTATATACATGAAACGCT 60.047 44.000 15.18 10.95 0.00 5.07
1452 2564 6.342338 ACGGAGGGAGTATATACATGAAAC 57.658 41.667 15.18 2.41 0.00 2.78
1465 2577 8.312564 GCTCTTATATTAATTTACGGAGGGAGT 58.687 37.037 0.00 0.00 0.00 3.85
1466 2578 7.488471 CGCTCTTATATTAATTTACGGAGGGAG 59.512 40.741 17.02 0.00 34.63 4.30
1467 2579 7.039504 ACGCTCTTATATTAATTTACGGAGGGA 60.040 37.037 22.59 0.00 35.94 4.20
1468 2580 7.095270 ACGCTCTTATATTAATTTACGGAGGG 58.905 38.462 18.58 18.58 37.30 4.30
1469 2581 8.530269 AACGCTCTTATATTAATTTACGGAGG 57.470 34.615 0.00 0.00 0.00 4.30
1482 2594 9.680315 GTAACAGTGATCTAAACGCTCTTATAT 57.320 33.333 0.00 0.00 0.00 0.86
1483 2595 8.680001 TGTAACAGTGATCTAAACGCTCTTATA 58.320 33.333 0.00 0.00 0.00 0.98
1484 2596 7.544622 TGTAACAGTGATCTAAACGCTCTTAT 58.455 34.615 0.00 0.00 0.00 1.73
1485 2597 6.916440 TGTAACAGTGATCTAAACGCTCTTA 58.084 36.000 0.00 0.00 0.00 2.10
1486 2598 5.779922 TGTAACAGTGATCTAAACGCTCTT 58.220 37.500 0.00 0.00 0.00 2.85
1487 2599 5.047943 ACTGTAACAGTGATCTAAACGCTCT 60.048 40.000 0.00 0.00 43.63 4.09
1488 2600 5.162075 ACTGTAACAGTGATCTAAACGCTC 58.838 41.667 0.00 0.00 43.63 5.03
1489 2601 5.135508 ACTGTAACAGTGATCTAAACGCT 57.864 39.130 0.00 0.00 43.63 5.07
1576 2707 3.969553 TCTCCTCCTACATGGATATCGG 58.030 50.000 0.00 0.00 45.16 4.18
1577 2708 4.274705 CGATCTCCTCCTACATGGATATCG 59.725 50.000 12.76 12.76 45.69 2.92
1578 2709 5.441500 TCGATCTCCTCCTACATGGATATC 58.558 45.833 0.00 0.00 45.16 1.63
1579 2710 5.445069 CTCGATCTCCTCCTACATGGATAT 58.555 45.833 0.00 0.00 45.16 1.63
1580 2711 4.324641 CCTCGATCTCCTCCTACATGGATA 60.325 50.000 0.00 0.00 45.16 2.59
1581 2712 3.563261 CCTCGATCTCCTCCTACATGGAT 60.563 52.174 0.00 0.00 45.16 3.41
1647 2778 1.913762 CCTCCTCACCTCCACGGTT 60.914 63.158 0.00 0.00 46.37 4.44
1763 2925 3.846360 AGACAACCGTTCTATACACTGC 58.154 45.455 0.00 0.00 0.00 4.40
1773 2976 0.317854 GCCAGCAAAGACAACCGTTC 60.318 55.000 0.00 0.00 0.00 3.95
1790 2993 3.409026 AGAATATCAAGATCGGTGGCC 57.591 47.619 0.00 0.00 0.00 5.36
1795 2998 4.082733 TGCTCGGTAGAATATCAAGATCGG 60.083 45.833 0.00 0.00 0.00 4.18
1797 3000 4.854291 CGTGCTCGGTAGAATATCAAGATC 59.146 45.833 0.00 0.00 0.00 2.75
1845 3063 5.860182 CACGAATCTCAAAGCAAACATGAAT 59.140 36.000 0.00 0.00 0.00 2.57
1849 3067 4.836125 ACACGAATCTCAAAGCAAACAT 57.164 36.364 0.00 0.00 0.00 2.71
1852 3070 3.066621 AGCAACACGAATCTCAAAGCAAA 59.933 39.130 0.00 0.00 0.00 3.68
1919 3149 7.962934 TGATACACGTTGAAACAAGAAAAAG 57.037 32.000 0.00 0.00 0.00 2.27
1925 3158 6.602179 ACATGATGATACACGTTGAAACAAG 58.398 36.000 0.00 0.00 0.00 3.16
1971 3206 3.760151 AGCAAAGCTGATAAGTGCATTCA 59.240 39.130 0.00 0.00 37.57 2.57
2027 3271 5.106317 GCTGATTTACCTCGTTCCAAAATGA 60.106 40.000 0.00 0.00 0.00 2.57
2042 3286 1.935933 ATCGTCCGTGGCTGATTTAC 58.064 50.000 0.00 0.00 0.00 2.01
2043 3287 2.684001 AATCGTCCGTGGCTGATTTA 57.316 45.000 1.15 0.00 0.00 1.40
2060 3371 3.054361 GGGTATCCCGAGCATGGATTAAT 60.054 47.826 6.94 0.00 42.57 1.40
2062 3373 1.906574 GGGTATCCCGAGCATGGATTA 59.093 52.381 6.94 0.00 42.57 1.75
2084 3395 5.507077 ACTTTTATTATTGTACCGCGCATG 58.493 37.500 8.75 0.00 0.00 4.06
2085 3396 5.294799 TGACTTTTATTATTGTACCGCGCAT 59.705 36.000 8.75 0.00 0.00 4.73
2086 3397 4.630505 TGACTTTTATTATTGTACCGCGCA 59.369 37.500 8.75 0.00 0.00 6.09
2087 3398 5.146482 TGACTTTTATTATTGTACCGCGC 57.854 39.130 0.00 0.00 0.00 6.86
2088 3399 7.627340 AGAATGACTTTTATTATTGTACCGCG 58.373 34.615 0.00 0.00 0.00 6.46
2098 3409 8.472413 ACACGGTAGCTAGAATGACTTTTATTA 58.528 33.333 0.00 0.00 0.00 0.98
2111 3422 3.286329 TCCATACACACGGTAGCTAGA 57.714 47.619 0.00 0.00 34.92 2.43
2115 3426 1.411246 TGGATCCATACACACGGTAGC 59.589 52.381 11.44 0.00 34.92 3.58
2117 3428 1.758280 GGTGGATCCATACACACGGTA 59.242 52.381 19.62 0.00 43.55 4.02
2118 3429 0.539986 GGTGGATCCATACACACGGT 59.460 55.000 19.62 0.00 43.55 4.83
2119 3430 0.539518 TGGTGGATCCATACACACGG 59.460 55.000 19.62 0.00 43.55 4.94
2140 3451 8.561738 AAATTCTACCGTCAAAGTAATCACAT 57.438 30.769 0.00 0.00 0.00 3.21
2141 3452 7.876068 AGAAATTCTACCGTCAAAGTAATCACA 59.124 33.333 0.00 0.00 0.00 3.58
2150 3461 8.664798 CAACATATGAGAAATTCTACCGTCAAA 58.335 33.333 10.38 0.00 0.00 2.69
2154 3465 7.041780 GCATCAACATATGAGAAATTCTACCGT 60.042 37.037 10.38 0.00 42.53 4.83
2156 3467 8.158169 TGCATCAACATATGAGAAATTCTACC 57.842 34.615 10.38 0.00 42.53 3.18
2169 3485 6.933521 GGAGAGAGTACATTGCATCAACATAT 59.066 38.462 0.00 0.00 0.00 1.78
2173 3489 3.553511 CGGAGAGAGTACATTGCATCAAC 59.446 47.826 0.00 0.00 0.00 3.18
2176 3492 3.444703 ACGGAGAGAGTACATTGCATC 57.555 47.619 0.00 0.00 0.00 3.91
2177 3493 3.895232 AACGGAGAGAGTACATTGCAT 57.105 42.857 0.00 0.00 0.00 3.96
2260 3576 9.624697 GCAAAATGAGTGAATGTACATTCTAAA 57.375 29.630 36.15 24.11 45.55 1.85
2261 3577 9.013229 AGCAAAATGAGTGAATGTACATTCTAA 57.987 29.630 36.15 22.12 45.55 2.10
2262 3578 8.565896 AGCAAAATGAGTGAATGTACATTCTA 57.434 30.769 36.15 24.75 45.55 2.10
2263 3579 7.362401 GGAGCAAAATGAGTGAATGTACATTCT 60.362 37.037 36.15 24.10 45.55 2.40
2264 3580 6.749118 GGAGCAAAATGAGTGAATGTACATTC 59.251 38.462 32.62 32.62 45.55 2.67
2265 3581 6.623549 CGGAGCAAAATGAGTGAATGTACATT 60.624 38.462 20.93 20.93 34.99 2.71
2266 3582 5.163723 CGGAGCAAAATGAGTGAATGTACAT 60.164 40.000 1.41 1.41 0.00 2.29
2267 3583 4.154015 CGGAGCAAAATGAGTGAATGTACA 59.846 41.667 0.00 0.00 0.00 2.90
2268 3584 4.154195 ACGGAGCAAAATGAGTGAATGTAC 59.846 41.667 0.00 0.00 0.00 2.90
2269 3585 4.323417 ACGGAGCAAAATGAGTGAATGTA 58.677 39.130 0.00 0.00 0.00 2.29
2270 3586 3.149196 ACGGAGCAAAATGAGTGAATGT 58.851 40.909 0.00 0.00 0.00 2.71
2271 3587 3.837213 ACGGAGCAAAATGAGTGAATG 57.163 42.857 0.00 0.00 0.00 2.67
2272 3588 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2273 3589 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2274 3590 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2275 3591 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2276 3592 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2277 3593 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2278 3594 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
2279 3595 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
2280 3596 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
2281 3597 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
2282 3598 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
2283 3599 5.303333 TCAATATGGACTACATACGGAGCAA 59.697 40.000 0.00 0.00 44.41 3.91
2284 3600 4.830600 TCAATATGGACTACATACGGAGCA 59.169 41.667 0.00 0.00 44.41 4.26
2285 3601 5.386958 TCAATATGGACTACATACGGAGC 57.613 43.478 0.00 0.00 44.41 4.70
2325 3641 9.802039 TGTTGTACTCCTTTTGTTCCTAAATAT 57.198 29.630 0.00 0.00 0.00 1.28
2326 3642 9.629878 TTGTTGTACTCCTTTTGTTCCTAAATA 57.370 29.630 0.00 0.00 0.00 1.40
2327 3643 8.528044 TTGTTGTACTCCTTTTGTTCCTAAAT 57.472 30.769 0.00 0.00 0.00 1.40
2328 3644 7.941431 TTGTTGTACTCCTTTTGTTCCTAAA 57.059 32.000 0.00 0.00 0.00 1.85
2329 3645 7.612633 ACTTTGTTGTACTCCTTTTGTTCCTAA 59.387 33.333 0.00 0.00 0.00 2.69
2330 3646 7.114095 ACTTTGTTGTACTCCTTTTGTTCCTA 58.886 34.615 0.00 0.00 0.00 2.94
2331 3647 5.949952 ACTTTGTTGTACTCCTTTTGTTCCT 59.050 36.000 0.00 0.00 0.00 3.36
2332 3648 6.203808 ACTTTGTTGTACTCCTTTTGTTCC 57.796 37.500 0.00 0.00 0.00 3.62
2333 3649 8.456471 ACTTACTTTGTTGTACTCCTTTTGTTC 58.544 33.333 0.00 0.00 0.00 3.18
2334 3650 8.344446 ACTTACTTTGTTGTACTCCTTTTGTT 57.656 30.769 0.00 0.00 0.00 2.83
2335 3651 7.933215 ACTTACTTTGTTGTACTCCTTTTGT 57.067 32.000 0.00 0.00 0.00 2.83
2336 3652 9.878599 CATACTTACTTTGTTGTACTCCTTTTG 57.121 33.333 0.00 0.00 0.00 2.44
2337 3653 9.623000 ACATACTTACTTTGTTGTACTCCTTTT 57.377 29.630 0.00 0.00 0.00 2.27
2338 3654 9.052759 CACATACTTACTTTGTTGTACTCCTTT 57.947 33.333 0.00 0.00 0.00 3.11
2339 3655 8.426489 TCACATACTTACTTTGTTGTACTCCTT 58.574 33.333 0.00 0.00 0.00 3.36
2340 3656 7.959175 TCACATACTTACTTTGTTGTACTCCT 58.041 34.615 0.00 0.00 0.00 3.69
2341 3657 7.871463 ACTCACATACTTACTTTGTTGTACTCC 59.129 37.037 0.00 0.00 0.00 3.85
2342 3658 8.813643 ACTCACATACTTACTTTGTTGTACTC 57.186 34.615 0.00 0.00 0.00 2.59
2367 3683 9.471084 GCACACACACATACATACATACTTATA 57.529 33.333 0.00 0.00 0.00 0.98
2368 3684 7.169140 CGCACACACACATACATACATACTTAT 59.831 37.037 0.00 0.00 0.00 1.73
2369 3685 6.474102 CGCACACACACATACATACATACTTA 59.526 38.462 0.00 0.00 0.00 2.24
2370 3686 5.290885 CGCACACACACATACATACATACTT 59.709 40.000 0.00 0.00 0.00 2.24
2371 3687 4.803613 CGCACACACACATACATACATACT 59.196 41.667 0.00 0.00 0.00 2.12
2372 3688 4.550063 GCGCACACACACATACATACATAC 60.550 45.833 0.30 0.00 0.00 2.39
2373 3689 3.553917 GCGCACACACACATACATACATA 59.446 43.478 0.30 0.00 0.00 2.29
2374 3690 2.351418 GCGCACACACACATACATACAT 59.649 45.455 0.30 0.00 0.00 2.29
2375 3691 1.729517 GCGCACACACACATACATACA 59.270 47.619 0.30 0.00 0.00 2.29
2376 3692 1.266842 CGCGCACACACACATACATAC 60.267 52.381 8.75 0.00 0.00 2.39
2377 3693 0.995728 CGCGCACACACACATACATA 59.004 50.000 8.75 0.00 0.00 2.29
2378 3694 1.787215 CGCGCACACACACATACAT 59.213 52.632 8.75 0.00 0.00 2.29
2379 3695 2.949030 GCGCGCACACACACATACA 61.949 57.895 29.10 0.00 0.00 2.29
2380 3696 2.202171 GCGCGCACACACACATAC 60.202 61.111 29.10 0.00 0.00 2.39
2381 3697 3.772560 CGCGCGCACACACACATA 61.773 61.111 32.61 0.00 0.00 2.29
2395 3711 2.581208 TATTAGTGTGTGCCCCCGCG 62.581 60.000 0.00 0.00 38.08 6.46
2396 3712 0.393267 TTATTAGTGTGTGCCCCCGC 60.393 55.000 0.00 0.00 0.00 6.13
2397 3713 2.116827 TTTATTAGTGTGTGCCCCCG 57.883 50.000 0.00 0.00 0.00 5.73
2398 3714 5.068591 CCTTTATTTATTAGTGTGTGCCCCC 59.931 44.000 0.00 0.00 0.00 5.40
2399 3715 5.889289 TCCTTTATTTATTAGTGTGTGCCCC 59.111 40.000 0.00 0.00 0.00 5.80
2400 3716 6.376018 TGTCCTTTATTTATTAGTGTGTGCCC 59.624 38.462 0.00 0.00 0.00 5.36
2401 3717 7.385778 TGTCCTTTATTTATTAGTGTGTGCC 57.614 36.000 0.00 0.00 0.00 5.01
2402 3718 8.673711 TCATGTCCTTTATTTATTAGTGTGTGC 58.326 33.333 0.00 0.00 0.00 4.57
2403 3719 9.988350 GTCATGTCCTTTATTTATTAGTGTGTG 57.012 33.333 0.00 0.00 0.00 3.82
2404 3720 9.733556 TGTCATGTCCTTTATTTATTAGTGTGT 57.266 29.630 0.00 0.00 0.00 3.72
2405 3721 9.988350 GTGTCATGTCCTTTATTTATTAGTGTG 57.012 33.333 0.00 0.00 0.00 3.82
2406 3722 9.959721 AGTGTCATGTCCTTTATTTATTAGTGT 57.040 29.630 0.00 0.00 0.00 3.55
2420 3736 9.614792 GTCCTTTATTTATTAGTGTCATGTCCT 57.385 33.333 0.00 0.00 0.00 3.85
2428 3744 9.314321 CGAGTCATGTCCTTTATTTATTAGTGT 57.686 33.333 0.00 0.00 0.00 3.55
2429 3745 9.529325 TCGAGTCATGTCCTTTATTTATTAGTG 57.471 33.333 0.00 0.00 0.00 2.74
2430 3746 9.530633 GTCGAGTCATGTCCTTTATTTATTAGT 57.469 33.333 0.00 0.00 0.00 2.24
2431 3747 8.979574 GGTCGAGTCATGTCCTTTATTTATTAG 58.020 37.037 0.00 0.00 0.00 1.73
2432 3748 7.650504 CGGTCGAGTCATGTCCTTTATTTATTA 59.349 37.037 0.00 0.00 0.00 0.98
2433 3749 6.479001 CGGTCGAGTCATGTCCTTTATTTATT 59.521 38.462 0.00 0.00 0.00 1.40
2434 3750 5.983720 CGGTCGAGTCATGTCCTTTATTTAT 59.016 40.000 0.00 0.00 0.00 1.40
2435 3751 5.345702 CGGTCGAGTCATGTCCTTTATTTA 58.654 41.667 0.00 0.00 0.00 1.40
2436 3752 4.181578 CGGTCGAGTCATGTCCTTTATTT 58.818 43.478 0.00 0.00 0.00 1.40
2437 3753 3.782046 CGGTCGAGTCATGTCCTTTATT 58.218 45.455 0.00 0.00 0.00 1.40
2438 3754 2.481449 GCGGTCGAGTCATGTCCTTTAT 60.481 50.000 0.00 0.00 0.00 1.40
2439 3755 1.135199 GCGGTCGAGTCATGTCCTTTA 60.135 52.381 0.00 0.00 0.00 1.85
2440 3756 0.389948 GCGGTCGAGTCATGTCCTTT 60.390 55.000 0.00 0.00 0.00 3.11
2441 3757 1.215647 GCGGTCGAGTCATGTCCTT 59.784 57.895 0.00 0.00 0.00 3.36
2442 3758 2.885861 GCGGTCGAGTCATGTCCT 59.114 61.111 0.00 0.00 0.00 3.85
2443 3759 2.537792 TTCGCGGTCGAGTCATGTCC 62.538 60.000 6.13 0.00 46.34 4.02
2444 3760 1.154093 TTCGCGGTCGAGTCATGTC 60.154 57.895 6.13 0.00 46.34 3.06
2445 3761 1.443872 GTTCGCGGTCGAGTCATGT 60.444 57.895 6.13 0.00 46.34 3.21
2446 3762 2.497092 CGTTCGCGGTCGAGTCATG 61.497 63.158 16.05 0.00 46.34 3.07
2447 3763 2.202440 CGTTCGCGGTCGAGTCAT 60.202 61.111 16.05 0.00 46.34 3.06
2448 3764 3.348205 TCGTTCGCGGTCGAGTCA 61.348 61.111 18.71 1.77 46.34 3.41
2449 3765 1.959899 TAGTCGTTCGCGGTCGAGTC 61.960 60.000 26.92 16.82 46.34 3.36
2450 3766 1.568612 TTAGTCGTTCGCGGTCGAGT 61.569 55.000 26.55 26.55 46.34 4.18
2451 3767 0.247974 ATTAGTCGTTCGCGGTCGAG 60.248 55.000 21.82 4.58 46.34 4.04
2452 3768 0.521867 CATTAGTCGTTCGCGGTCGA 60.522 55.000 18.71 18.71 43.89 4.20
2461 3777 6.037726 TGCGACACATTATACATTAGTCGTT 58.962 36.000 12.64 0.00 46.24 3.85
2467 3783 6.645003 GGATCACTGCGACACATTATACATTA 59.355 38.462 0.00 0.00 0.00 1.90
2471 3787 4.209288 GTGGATCACTGCGACACATTATAC 59.791 45.833 0.00 0.00 32.58 1.47
2472 3788 4.368315 GTGGATCACTGCGACACATTATA 58.632 43.478 0.00 0.00 32.58 0.98
2473 3789 3.198068 GTGGATCACTGCGACACATTAT 58.802 45.455 0.00 0.00 32.58 1.28
2474 3790 2.616960 GTGGATCACTGCGACACATTA 58.383 47.619 0.00 0.00 32.58 1.90
2475 3791 1.442769 GTGGATCACTGCGACACATT 58.557 50.000 0.00 0.00 32.58 2.71
2477 3796 1.005037 GGTGGATCACTGCGACACA 60.005 57.895 0.00 0.00 34.40 3.72
2485 3804 1.611419 CATGCTGGGGTGGATCACT 59.389 57.895 0.00 0.00 34.40 3.41
2546 3866 2.542178 TGTAGCGCATATAACGGCAAAG 59.458 45.455 11.47 0.00 0.00 2.77
2554 3874 6.685527 TCACCAAAATTGTAGCGCATATAA 57.314 33.333 11.47 4.36 0.00 0.98
2561 3881 7.807907 ACTCTTTTATTCACCAAAATTGTAGCG 59.192 33.333 0.00 0.00 0.00 4.26
2576 3898 9.665264 CTCTTTTTACACCACACTCTTTTATTC 57.335 33.333 0.00 0.00 0.00 1.75
2637 3961 1.682323 GTGTTTGCCCGGTAGGAAAAA 59.318 47.619 0.00 0.00 41.02 1.94
2638 3962 1.320507 GTGTTTGCCCGGTAGGAAAA 58.679 50.000 0.00 0.00 41.02 2.29
2639 3963 0.537828 GGTGTTTGCCCGGTAGGAAA 60.538 55.000 0.00 0.00 41.02 3.13
2640 3964 1.073548 GGTGTTTGCCCGGTAGGAA 59.926 57.895 0.00 0.00 41.02 3.36
2641 3965 2.751688 GGTGTTTGCCCGGTAGGA 59.248 61.111 0.00 0.00 41.02 2.94
2642 3966 2.360726 GGGTGTTTGCCCGGTAGG 60.361 66.667 0.00 0.00 39.17 3.18
2649 3973 1.055849 AATGGAAAGGGGTGTTTGCC 58.944 50.000 0.00 0.00 0.00 4.52
2650 3974 4.020662 TGATTAATGGAAAGGGGTGTTTGC 60.021 41.667 0.00 0.00 0.00 3.68
2651 3975 5.011533 TGTGATTAATGGAAAGGGGTGTTTG 59.988 40.000 0.00 0.00 0.00 2.93
2652 3976 5.151454 TGTGATTAATGGAAAGGGGTGTTT 58.849 37.500 0.00 0.00 0.00 2.83
2653 3977 4.746466 TGTGATTAATGGAAAGGGGTGTT 58.254 39.130 0.00 0.00 0.00 3.32
2654 3978 4.396357 TGTGATTAATGGAAAGGGGTGT 57.604 40.909 0.00 0.00 0.00 4.16
2655 3979 4.955450 TGATGTGATTAATGGAAAGGGGTG 59.045 41.667 0.00 0.00 0.00 4.61
2656 3980 5.205517 TGATGTGATTAATGGAAAGGGGT 57.794 39.130 0.00 0.00 0.00 4.95
2657 3981 5.450412 CGTTGATGTGATTAATGGAAAGGGG 60.450 44.000 0.00 0.00 0.00 4.79
2658 3982 5.450412 CCGTTGATGTGATTAATGGAAAGGG 60.450 44.000 0.00 0.00 37.15 3.95
2659 3983 5.356751 TCCGTTGATGTGATTAATGGAAAGG 59.643 40.000 0.00 0.00 39.94 3.11
2660 3984 6.435430 TCCGTTGATGTGATTAATGGAAAG 57.565 37.500 0.00 0.00 39.94 2.62
2661 3985 6.825944 TTCCGTTGATGTGATTAATGGAAA 57.174 33.333 10.71 0.00 45.39 3.13
2662 3986 6.825944 TTTCCGTTGATGTGATTAATGGAA 57.174 33.333 9.56 9.56 46.15 3.53
2663 3987 8.690203 ATATTTCCGTTGATGTGATTAATGGA 57.310 30.769 0.00 0.00 40.80 3.41
2664 3988 9.398170 GAATATTTCCGTTGATGTGATTAATGG 57.602 33.333 0.00 0.00 36.54 3.16
2665 3989 9.106286 CGAATATTTCCGTTGATGTGATTAATG 57.894 33.333 0.00 0.00 0.00 1.90
2666 3990 9.051679 TCGAATATTTCCGTTGATGTGATTAAT 57.948 29.630 0.00 0.00 0.00 1.40
2667 3991 8.426881 TCGAATATTTCCGTTGATGTGATTAA 57.573 30.769 0.00 0.00 0.00 1.40
2668 3992 7.709182 ACTCGAATATTTCCGTTGATGTGATTA 59.291 33.333 0.00 0.00 0.00 1.75
2669 3993 6.538742 ACTCGAATATTTCCGTTGATGTGATT 59.461 34.615 0.00 0.00 0.00 2.57
2670 3994 6.049149 ACTCGAATATTTCCGTTGATGTGAT 58.951 36.000 0.00 0.00 0.00 3.06
2671 3995 5.416083 ACTCGAATATTTCCGTTGATGTGA 58.584 37.500 0.00 0.00 0.00 3.58
2672 3996 5.718649 ACTCGAATATTTCCGTTGATGTG 57.281 39.130 0.00 0.00 0.00 3.21
2673 3997 6.334989 TGTACTCGAATATTTCCGTTGATGT 58.665 36.000 0.00 0.00 0.00 3.06
2674 3998 6.822073 TGTACTCGAATATTTCCGTTGATG 57.178 37.500 0.00 0.00 0.00 3.07
2675 3999 7.169308 GTCATGTACTCGAATATTTCCGTTGAT 59.831 37.037 0.00 0.00 0.00 2.57
2676 4000 6.474427 GTCATGTACTCGAATATTTCCGTTGA 59.526 38.462 0.00 0.00 0.00 3.18
2677 4001 6.254804 TGTCATGTACTCGAATATTTCCGTTG 59.745 38.462 0.00 0.00 0.00 4.10
2678 4002 6.334989 TGTCATGTACTCGAATATTTCCGTT 58.665 36.000 0.00 0.00 0.00 4.44
2679 4003 5.898174 TGTCATGTACTCGAATATTTCCGT 58.102 37.500 0.00 0.00 0.00 4.69
2680 4004 5.977725 ACTGTCATGTACTCGAATATTTCCG 59.022 40.000 0.00 0.00 0.00 4.30
2681 4005 7.491372 TGAACTGTCATGTACTCGAATATTTCC 59.509 37.037 0.00 0.00 0.00 3.13
2682 4006 8.407457 TGAACTGTCATGTACTCGAATATTTC 57.593 34.615 0.00 0.00 0.00 2.17
2683 4007 8.251026 TCTGAACTGTCATGTACTCGAATATTT 58.749 33.333 0.00 0.00 31.85 1.40
2684 4008 7.702772 GTCTGAACTGTCATGTACTCGAATATT 59.297 37.037 0.00 0.00 31.85 1.28
2685 4009 7.067615 AGTCTGAACTGTCATGTACTCGAATAT 59.932 37.037 0.00 0.00 33.32 1.28
2686 4010 6.374613 AGTCTGAACTGTCATGTACTCGAATA 59.625 38.462 0.00 0.00 33.32 1.75
2687 4011 5.184096 AGTCTGAACTGTCATGTACTCGAAT 59.816 40.000 0.00 0.00 33.32 3.34
2688 4012 4.519350 AGTCTGAACTGTCATGTACTCGAA 59.481 41.667 0.00 0.00 33.32 3.71
2689 4013 4.072839 AGTCTGAACTGTCATGTACTCGA 58.927 43.478 0.00 0.00 33.32 4.04
2690 4014 4.427096 AGTCTGAACTGTCATGTACTCG 57.573 45.455 0.00 0.00 33.32 4.18
2691 4015 5.802956 GCTTAGTCTGAACTGTCATGTACTC 59.197 44.000 0.00 0.00 36.92 2.59
2692 4016 5.243954 TGCTTAGTCTGAACTGTCATGTACT 59.756 40.000 0.00 0.00 36.92 2.73
2693 4017 5.470368 TGCTTAGTCTGAACTGTCATGTAC 58.530 41.667 0.00 0.00 36.92 2.90
2694 4018 5.722021 TGCTTAGTCTGAACTGTCATGTA 57.278 39.130 0.00 0.00 36.92 2.29
2695 4019 4.607293 TGCTTAGTCTGAACTGTCATGT 57.393 40.909 0.00 0.00 36.92 3.21
2696 4020 4.391216 CCTTGCTTAGTCTGAACTGTCATG 59.609 45.833 0.00 0.00 36.92 3.07
2697 4021 4.284490 TCCTTGCTTAGTCTGAACTGTCAT 59.716 41.667 0.00 0.00 36.92 3.06
2698 4022 3.641436 TCCTTGCTTAGTCTGAACTGTCA 59.359 43.478 0.00 0.00 36.92 3.58
2699 4023 4.258702 TCCTTGCTTAGTCTGAACTGTC 57.741 45.455 0.00 0.00 36.92 3.51
2700 4024 4.101741 AGTTCCTTGCTTAGTCTGAACTGT 59.898 41.667 0.00 0.00 40.47 3.55
2701 4025 4.636249 AGTTCCTTGCTTAGTCTGAACTG 58.364 43.478 0.00 0.00 40.47 3.16
2702 4026 4.345257 TCAGTTCCTTGCTTAGTCTGAACT 59.655 41.667 0.00 0.00 42.13 3.01
2703 4027 4.632153 TCAGTTCCTTGCTTAGTCTGAAC 58.368 43.478 0.00 0.00 33.94 3.18
2704 4028 4.955811 TCAGTTCCTTGCTTAGTCTGAA 57.044 40.909 0.00 0.00 0.00 3.02
2705 4029 4.345257 AGTTCAGTTCCTTGCTTAGTCTGA 59.655 41.667 0.00 0.00 0.00 3.27
2706 4030 4.636249 AGTTCAGTTCCTTGCTTAGTCTG 58.364 43.478 0.00 0.00 0.00 3.51
2707 4031 4.965200 AGTTCAGTTCCTTGCTTAGTCT 57.035 40.909 0.00 0.00 0.00 3.24
2708 4032 5.172205 CCTAGTTCAGTTCCTTGCTTAGTC 58.828 45.833 0.00 0.00 0.00 2.59
2709 4033 4.020128 CCCTAGTTCAGTTCCTTGCTTAGT 60.020 45.833 0.00 0.00 0.00 2.24
2710 4034 4.223032 TCCCTAGTTCAGTTCCTTGCTTAG 59.777 45.833 0.00 0.00 0.00 2.18
2711 4035 4.164981 TCCCTAGTTCAGTTCCTTGCTTA 58.835 43.478 0.00 0.00 0.00 3.09
2712 4036 2.979678 TCCCTAGTTCAGTTCCTTGCTT 59.020 45.455 0.00 0.00 0.00 3.91
2713 4037 2.621070 TCCCTAGTTCAGTTCCTTGCT 58.379 47.619 0.00 0.00 0.00 3.91
2714 4038 3.636153 ATCCCTAGTTCAGTTCCTTGC 57.364 47.619 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.