Multiple sequence alignment - TraesCS5D01G377800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G377800 chr5D 100.000 3656 0 0 1 3656 449689790 449686135 0.000000e+00 6752.0
1 TraesCS5D01G377800 chr5D 82.622 328 49 6 2386 2713 449672269 449672588 2.150000e-72 283.0
2 TraesCS5D01G377800 chr5D 82.069 145 22 4 190 333 565351459 565351600 1.780000e-23 121.0
3 TraesCS5D01G377800 chr5D 91.304 46 4 0 386 431 474761710 474761755 3.050000e-06 63.9
4 TraesCS5D01G377800 chr5A 92.106 2407 123 25 387 2778 569068843 569066489 0.000000e+00 3330.0
5 TraesCS5D01G377800 chr5A 89.947 378 31 5 3285 3655 569039153 569038776 7.100000e-132 481.0
6 TraesCS5D01G377800 chr5A 87.831 378 38 4 3285 3655 569013042 569012666 1.560000e-118 436.0
7 TraesCS5D01G377800 chr5A 90.749 227 14 3 1 222 569069559 569069335 2.760000e-76 296.0
8 TraesCS5D01G377800 chr5A 83.621 116 10 1 2852 2967 569022327 569022221 2.320000e-17 100.0
9 TraesCS5D01G377800 chr5A 82.759 116 11 1 2852 2967 569048752 569048646 1.080000e-15 95.3
10 TraesCS5D01G377800 chr5B 94.981 1554 75 3 1226 2778 549671426 549669875 0.000000e+00 2435.0
11 TraesCS5D01G377800 chr5B 89.796 441 33 7 3224 3655 549654247 549653810 4.120000e-154 555.0
12 TraesCS5D01G377800 chr5B 93.252 163 11 0 3066 3228 539322884 539322722 1.310000e-59 241.0
13 TraesCS5D01G377800 chr5B 93.125 160 11 0 3066 3225 595395324 595395483 6.100000e-58 235.0
14 TraesCS5D01G377800 chr5B 92.405 158 9 2 956 1113 549671584 549671430 4.750000e-54 222.0
15 TraesCS5D01G377800 chr5B 85.185 189 17 3 2832 3020 549654750 549654573 2.240000e-42 183.0
16 TraesCS5D01G377800 chr5B 87.755 98 8 2 819 916 549671690 549671597 1.070000e-20 111.0
17 TraesCS5D01G377800 chr2D 89.572 1659 162 6 1000 2657 643071130 643069482 0.000000e+00 2095.0
18 TraesCS5D01G377800 chr2D 88.044 1723 179 16 941 2657 642965470 642967171 0.000000e+00 2015.0
19 TraesCS5D01G377800 chr2D 89.912 456 46 0 1000 1455 642994447 642993992 4.070000e-164 588.0
20 TraesCS5D01G377800 chr2D 89.000 100 11 0 1536 1635 636238061 636237962 1.380000e-24 124.0
21 TraesCS5D01G377800 chr2D 100.000 30 0 0 388 417 379344144 379344173 5.100000e-04 56.5
22 TraesCS5D01G377800 chr2A 89.834 1623 157 4 1000 2621 767952044 767950429 0.000000e+00 2076.0
23 TraesCS5D01G377800 chr2A 84.584 986 128 13 1544 2516 767746703 767747677 0.000000e+00 957.0
24 TraesCS5D01G377800 chr2A 84.298 968 137 8 1553 2516 767728751 767729707 0.000000e+00 931.0
25 TraesCS5D01G377800 chr2A 88.136 59 7 0 724 782 34317606 34317664 1.820000e-08 71.3
26 TraesCS5D01G377800 chrUn 89.216 1632 169 3 999 2630 31607126 31605502 0.000000e+00 2032.0
27 TraesCS5D01G377800 chrUn 89.573 1218 115 7 999 2213 31583216 31584424 0.000000e+00 1535.0
28 TraesCS5D01G377800 chrUn 89.503 181 14 4 3065 3243 266284219 266284042 1.320000e-54 224.0
29 TraesCS5D01G377800 chrUn 89.503 181 14 4 3065 3243 266293146 266292969 1.320000e-54 224.0
30 TraesCS5D01G377800 chr4D 83.455 1650 247 21 973 2610 483951259 483952894 0.000000e+00 1511.0
31 TraesCS5D01G377800 chr4D 100.000 30 0 0 385 414 471420837 471420866 5.100000e-04 56.5
32 TraesCS5D01G377800 chr4B 83.179 1623 247 18 1001 2610 614719799 614721408 0.000000e+00 1461.0
33 TraesCS5D01G377800 chr4B 93.293 164 11 0 3067 3230 483266540 483266377 3.650000e-60 243.0
34 TraesCS5D01G377800 chr4B 97.222 36 0 1 382 417 640115289 640115323 3.940000e-05 60.2
35 TraesCS5D01G377800 chr3B 91.279 172 14 1 3059 3229 410043719 410043890 2.200000e-57 233.0
36 TraesCS5D01G377800 chr3B 91.617 167 14 0 3059 3225 183601078 183601244 7.900000e-57 231.0
37 TraesCS5D01G377800 chr3B 83.673 147 21 3 190 336 593059350 593059207 6.370000e-28 135.0
38 TraesCS5D01G377800 chr6D 92.073 164 13 0 3065 3228 15801273 15801110 7.900000e-57 231.0
39 TraesCS5D01G377800 chr6D 84.921 126 17 2 210 335 406640125 406640002 3.830000e-25 126.0
40 TraesCS5D01G377800 chr2B 91.228 171 12 2 3067 3234 53410870 53410700 2.840000e-56 230.0
41 TraesCS5D01G377800 chr2B 82.993 147 25 0 190 336 168523851 168523705 2.290000e-27 134.0
42 TraesCS5D01G377800 chr2B 89.130 46 3 2 386 430 694047357 694047313 5.100000e-04 56.5
43 TraesCS5D01G377800 chr7A 86.508 126 15 2 210 335 579767578 579767455 1.770000e-28 137.0
44 TraesCS5D01G377800 chr3A 85.271 129 19 0 207 335 374425209 374425337 2.290000e-27 134.0
45 TraesCS5D01G377800 chr1D 85.271 129 17 2 206 334 365800452 365800326 8.240000e-27 132.0
46 TraesCS5D01G377800 chr1B 82.877 146 22 3 190 335 242745455 242745313 1.070000e-25 128.0
47 TraesCS5D01G377800 chr1B 88.889 45 3 2 387 430 452512042 452512085 2.000000e-03 54.7
48 TraesCS5D01G377800 chr1A 83.969 131 19 2 204 333 188213375 188213246 1.380000e-24 124.0
49 TraesCS5D01G377800 chr7B 97.059 34 0 1 384 417 564376976 564377008 5.100000e-04 56.5
50 TraesCS5D01G377800 chr6B 90.698 43 1 3 386 425 624618231 624618273 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G377800 chr5D 449686135 449689790 3655 True 6752.000000 6752 100.000000 1 3656 1 chr5D.!!$R1 3655
1 TraesCS5D01G377800 chr5A 569066489 569069559 3070 True 1813.000000 3330 91.427500 1 2778 2 chr5A.!!$R5 2777
2 TraesCS5D01G377800 chr5B 549669875 549671690 1815 True 922.666667 2435 91.713667 819 2778 3 chr5B.!!$R3 1959
3 TraesCS5D01G377800 chr5B 549653810 549654750 940 True 369.000000 555 87.490500 2832 3655 2 chr5B.!!$R2 823
4 TraesCS5D01G377800 chr2D 643069482 643071130 1648 True 2095.000000 2095 89.572000 1000 2657 1 chr2D.!!$R3 1657
5 TraesCS5D01G377800 chr2D 642965470 642967171 1701 False 2015.000000 2015 88.044000 941 2657 1 chr2D.!!$F2 1716
6 TraesCS5D01G377800 chr2A 767950429 767952044 1615 True 2076.000000 2076 89.834000 1000 2621 1 chr2A.!!$R1 1621
7 TraesCS5D01G377800 chr2A 767746703 767747677 974 False 957.000000 957 84.584000 1544 2516 1 chr2A.!!$F3 972
8 TraesCS5D01G377800 chr2A 767728751 767729707 956 False 931.000000 931 84.298000 1553 2516 1 chr2A.!!$F2 963
9 TraesCS5D01G377800 chrUn 31605502 31607126 1624 True 2032.000000 2032 89.216000 999 2630 1 chrUn.!!$R1 1631
10 TraesCS5D01G377800 chrUn 31583216 31584424 1208 False 1535.000000 1535 89.573000 999 2213 1 chrUn.!!$F1 1214
11 TraesCS5D01G377800 chr4D 483951259 483952894 1635 False 1511.000000 1511 83.455000 973 2610 1 chr4D.!!$F2 1637
12 TraesCS5D01G377800 chr4B 614719799 614721408 1609 False 1461.000000 1461 83.179000 1001 2610 1 chr4B.!!$F1 1609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 1035 0.456221 AATCACGAGGTAGCGTCCAG 59.544 55.000 0.00 0.02 43.59 3.86 F
1354 1723 1.537348 CCAAGGTCTTGTTCGTCGACA 60.537 52.381 17.16 0.00 38.85 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2613 3003 1.536943 GGAGCACAAGACTCCGGACT 61.537 60.0 0.0 0.0 44.1 3.85 R
2738 3128 1.112315 TCAACCCACGCCATGCTTTT 61.112 50.0 0.0 0.0 0.0 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.082245 CGAGCCCATAAAAACTCCATTGTT 60.082 41.667 0.00 0.00 0.00 2.83
38 39 4.622933 GCCCATAAAAACTCCATTGTTCCC 60.623 45.833 0.00 0.00 0.00 3.97
81 83 4.419522 AATACAACAGACAAACATCGCC 57.580 40.909 0.00 0.00 0.00 5.54
98 100 1.318158 GCCTTGGCCATGAGGAACAG 61.318 60.000 25.19 8.67 36.89 3.16
108 110 3.503748 CCATGAGGAACAGGAAACAAGTC 59.496 47.826 0.00 0.00 36.89 3.01
125 127 1.827789 TCTTGGTGTGGCCTGCAAC 60.828 57.895 3.32 6.64 38.35 4.17
137 139 2.412770 GGCCTGCAACGAAATTGAATTG 59.587 45.455 0.00 0.00 41.23 2.32
192 198 3.116746 ACCCCTTGAAATCTGGGAGTTTT 60.117 43.478 11.76 0.00 43.47 2.43
193 199 3.903714 CCCCTTGAAATCTGGGAGTTTTT 59.096 43.478 11.76 0.00 43.47 1.94
214 220 9.422196 GTTTTTCTCCATATTTTCGTCTATTCG 57.578 33.333 0.00 0.00 0.00 3.34
229 235 8.697846 TCGTCTATTCGAAATGTTTTACATCT 57.302 30.769 0.00 0.00 34.78 2.90
230 236 9.146984 TCGTCTATTCGAAATGTTTTACATCTT 57.853 29.630 0.00 0.00 34.78 2.40
238 244 9.619316 TCGAAATGTTTTACATCTTAAACCATG 57.381 29.630 0.00 0.00 37.97 3.66
239 245 8.372521 CGAAATGTTTTACATCTTAAACCATGC 58.627 33.333 0.00 0.00 37.97 4.06
240 246 7.810766 AATGTTTTACATCTTAAACCATGCG 57.189 32.000 0.00 0.00 37.97 4.73
241 247 6.320494 TGTTTTACATCTTAAACCATGCGT 57.680 33.333 0.00 0.00 34.21 5.24
242 248 6.375377 TGTTTTACATCTTAAACCATGCGTC 58.625 36.000 0.00 0.00 34.21 5.19
248 254 4.695217 TCTTAAACCATGCGTCCAAATC 57.305 40.909 0.00 0.00 0.00 2.17
249 255 3.126171 TCTTAAACCATGCGTCCAAATCG 59.874 43.478 0.00 0.00 0.00 3.34
263 269 3.040099 CCAAATCGTGAACCGTTTTCAC 58.960 45.455 14.31 14.31 43.85 3.18
265 271 0.863144 ATCGTGAACCGTTTTCACCG 59.137 50.000 17.13 13.35 44.29 4.94
277 283 3.551551 GTTTTCACCGTTGGATTTCTCG 58.448 45.455 0.00 0.00 0.00 4.04
278 284 1.153353 TTCACCGTTGGATTTCTCGC 58.847 50.000 0.00 0.00 0.00 5.03
279 285 1.011968 TCACCGTTGGATTTCTCGCG 61.012 55.000 0.00 0.00 0.00 5.87
280 286 1.005394 ACCGTTGGATTTCTCGCGT 60.005 52.632 5.77 0.00 0.00 6.01
281 287 1.012486 ACCGTTGGATTTCTCGCGTC 61.012 55.000 5.77 0.00 0.00 5.19
282 288 1.340465 CGTTGGATTTCTCGCGTCG 59.660 57.895 5.77 0.00 0.00 5.12
283 289 1.068832 CGTTGGATTTCTCGCGTCGA 61.069 55.000 5.77 0.63 0.00 4.20
294 300 2.341318 TCGCGTCGAGATCTCAAAAA 57.659 45.000 22.31 2.01 0.00 1.94
295 301 1.983605 TCGCGTCGAGATCTCAAAAAC 59.016 47.619 22.31 12.62 0.00 2.43
296 302 1.986378 CGCGTCGAGATCTCAAAAACT 59.014 47.619 22.31 0.00 0.00 2.66
297 303 3.120095 TCGCGTCGAGATCTCAAAAACTA 60.120 43.478 22.31 0.00 0.00 2.24
298 304 3.606777 CGCGTCGAGATCTCAAAAACTAA 59.393 43.478 22.31 0.00 0.00 2.24
299 305 4.089493 CGCGTCGAGATCTCAAAAACTAAA 59.911 41.667 22.31 0.00 0.00 1.85
300 306 5.220228 CGCGTCGAGATCTCAAAAACTAAAT 60.220 40.000 22.31 0.00 0.00 1.40
301 307 6.534934 GCGTCGAGATCTCAAAAACTAAATT 58.465 36.000 22.31 0.00 0.00 1.82
302 308 6.679081 GCGTCGAGATCTCAAAAACTAAATTC 59.321 38.462 22.31 0.00 0.00 2.17
303 309 7.174082 CGTCGAGATCTCAAAAACTAAATTCC 58.826 38.462 22.31 0.00 0.00 3.01
304 310 7.148639 CGTCGAGATCTCAAAAACTAAATTCCA 60.149 37.037 22.31 0.00 0.00 3.53
305 311 8.669243 GTCGAGATCTCAAAAACTAAATTCCAT 58.331 33.333 22.31 0.00 0.00 3.41
306 312 8.668353 TCGAGATCTCAAAAACTAAATTCCATG 58.332 33.333 22.31 0.00 0.00 3.66
307 313 8.454106 CGAGATCTCAAAAACTAAATTCCATGT 58.546 33.333 22.31 0.00 0.00 3.21
322 328 8.980143 AAATTCCATGTTATTAGGTTTCAACG 57.020 30.769 0.00 0.00 0.00 4.10
323 329 7.931578 ATTCCATGTTATTAGGTTTCAACGA 57.068 32.000 0.00 0.00 0.00 3.85
324 330 7.747155 TTCCATGTTATTAGGTTTCAACGAA 57.253 32.000 0.00 0.00 0.00 3.85
325 331 7.136289 TCCATGTTATTAGGTTTCAACGAAC 57.864 36.000 0.00 0.00 0.00 3.95
326 332 6.711194 TCCATGTTATTAGGTTTCAACGAACA 59.289 34.615 0.00 0.00 0.00 3.18
327 333 7.392113 TCCATGTTATTAGGTTTCAACGAACAT 59.608 33.333 0.00 0.00 36.88 2.71
328 334 8.026607 CCATGTTATTAGGTTTCAACGAACATT 58.973 33.333 0.00 0.00 34.84 2.71
329 335 8.849490 CATGTTATTAGGTTTCAACGAACATTG 58.151 33.333 0.00 0.00 34.84 2.82
330 336 7.932335 TGTTATTAGGTTTCAACGAACATTGT 58.068 30.769 0.00 0.00 0.00 2.71
331 337 8.407064 TGTTATTAGGTTTCAACGAACATTGTT 58.593 29.630 0.63 0.63 0.00 2.83
332 338 9.240159 GTTATTAGGTTTCAACGAACATTGTTT 57.760 29.630 3.08 0.00 0.00 2.83
333 339 9.804758 TTATTAGGTTTCAACGAACATTGTTTT 57.195 25.926 3.08 0.00 0.00 2.43
334 340 8.710835 ATTAGGTTTCAACGAACATTGTTTTT 57.289 26.923 3.08 0.00 0.00 1.94
335 341 9.804758 ATTAGGTTTCAACGAACATTGTTTTTA 57.195 25.926 3.08 0.00 0.00 1.52
336 342 9.635520 TTAGGTTTCAACGAACATTGTTTTTAA 57.364 25.926 3.08 0.00 0.00 1.52
337 343 8.535690 AGGTTTCAACGAACATTGTTTTTAAA 57.464 26.923 3.08 0.00 0.00 1.52
338 344 8.436970 AGGTTTCAACGAACATTGTTTTTAAAC 58.563 29.630 3.08 8.74 39.33 2.01
339 345 8.436970 GGTTTCAACGAACATTGTTTTTAAACT 58.563 29.630 16.02 0.00 39.59 2.66
340 346 9.455559 GTTTCAACGAACATTGTTTTTAAACTC 57.544 29.630 3.08 0.00 39.59 3.01
341 347 8.973835 TTCAACGAACATTGTTTTTAAACTCT 57.026 26.923 3.08 0.00 39.59 3.24
342 348 8.388319 TCAACGAACATTGTTTTTAAACTCTG 57.612 30.769 3.08 6.56 39.59 3.35
343 349 7.486551 TCAACGAACATTGTTTTTAAACTCTGG 59.513 33.333 3.08 0.00 39.59 3.86
344 350 7.090953 ACGAACATTGTTTTTAAACTCTGGA 57.909 32.000 3.08 0.00 39.59 3.86
345 351 7.540299 ACGAACATTGTTTTTAAACTCTGGAA 58.460 30.769 3.08 0.00 39.59 3.53
346 352 8.030106 ACGAACATTGTTTTTAAACTCTGGAAA 58.970 29.630 3.08 0.00 39.59 3.13
347 353 8.865001 CGAACATTGTTTTTAAACTCTGGAAAA 58.135 29.630 3.08 0.00 39.59 2.29
350 356 8.941977 ACATTGTTTTTAAACTCTGGAAAAACC 58.058 29.630 15.67 0.00 45.77 3.27
351 357 7.583860 TTGTTTTTAAACTCTGGAAAAACCG 57.416 32.000 15.67 0.00 45.77 4.44
352 358 6.921914 TGTTTTTAAACTCTGGAAAAACCGA 58.078 32.000 15.67 0.90 45.77 4.69
353 359 7.376615 TGTTTTTAAACTCTGGAAAAACCGAA 58.623 30.769 15.67 0.34 45.77 4.30
354 360 8.035984 TGTTTTTAAACTCTGGAAAAACCGAAT 58.964 29.630 15.67 0.00 45.77 3.34
355 361 8.875803 GTTTTTAAACTCTGGAAAAACCGAATT 58.124 29.630 9.85 0.00 42.87 2.17
356 362 9.438228 TTTTTAAACTCTGGAAAAACCGAATTT 57.562 25.926 0.00 0.00 42.61 1.82
357 363 9.438228 TTTTAAACTCTGGAAAAACCGAATTTT 57.562 25.926 0.00 0.00 42.55 1.82
365 371 4.489306 AAAAACCGAATTTTTGTCCCCA 57.511 36.364 8.69 0.00 46.53 4.96
366 372 4.698201 AAAACCGAATTTTTGTCCCCAT 57.302 36.364 0.00 0.00 37.18 4.00
367 373 5.810080 AAAACCGAATTTTTGTCCCCATA 57.190 34.783 0.00 0.00 37.18 2.74
368 374 6.367374 AAAACCGAATTTTTGTCCCCATAT 57.633 33.333 0.00 0.00 37.18 1.78
369 375 6.367374 AAACCGAATTTTTGTCCCCATATT 57.633 33.333 0.00 0.00 0.00 1.28
370 376 6.367374 AACCGAATTTTTGTCCCCATATTT 57.633 33.333 0.00 0.00 0.00 1.40
371 377 6.367374 ACCGAATTTTTGTCCCCATATTTT 57.633 33.333 0.00 0.00 0.00 1.82
372 378 6.774673 ACCGAATTTTTGTCCCCATATTTTT 58.225 32.000 0.00 0.00 0.00 1.94
397 751 2.765250 TTTCGACCTGTGCCTCTCGC 62.765 60.000 0.00 0.00 38.31 5.03
399 753 4.803426 GACCTGTGCCTCTCGCGG 62.803 72.222 6.13 0.00 42.08 6.46
439 793 6.672593 TCCATAAGAAGTAAATCCATGCCTT 58.327 36.000 0.00 0.00 0.00 4.35
440 794 7.125391 TCCATAAGAAGTAAATCCATGCCTTT 58.875 34.615 0.00 0.00 0.00 3.11
450 804 1.134401 TCCATGCCTTTAGGAGAAGCG 60.134 52.381 0.00 0.00 37.39 4.68
454 808 4.380531 CATGCCTTTAGGAGAAGCGAATA 58.619 43.478 0.00 0.00 37.39 1.75
456 810 4.380531 TGCCTTTAGGAGAAGCGAATATG 58.619 43.478 0.00 0.00 37.39 1.78
464 818 3.002759 GGAGAAGCGAATATGTGCCTTTC 59.997 47.826 0.00 0.00 0.00 2.62
467 821 3.173668 AGCGAATATGTGCCTTTCGTA 57.826 42.857 6.22 0.00 43.03 3.43
472 826 4.209288 CGAATATGTGCCTTTCGTAGAAGG 59.791 45.833 9.58 9.58 45.90 3.46
477 831 4.200874 TGTGCCTTTCGTAGAAGGAAAAA 58.799 39.130 15.70 0.00 45.90 1.94
530 884 2.566724 TCATGGAAGCAAATTTGTCCCC 59.433 45.455 19.77 16.81 0.00 4.81
531 885 1.347062 TGGAAGCAAATTTGTCCCCC 58.653 50.000 19.77 15.47 0.00 5.40
649 1006 6.598753 ATCGATCTATAACCCAAAAACACG 57.401 37.500 0.00 0.00 0.00 4.49
651 1008 6.629128 TCGATCTATAACCCAAAAACACGTA 58.371 36.000 0.00 0.00 0.00 3.57
652 1009 7.095910 TCGATCTATAACCCAAAAACACGTAA 58.904 34.615 0.00 0.00 0.00 3.18
653 1010 7.601886 TCGATCTATAACCCAAAAACACGTAAA 59.398 33.333 0.00 0.00 0.00 2.01
654 1011 8.229137 CGATCTATAACCCAAAAACACGTAAAA 58.771 33.333 0.00 0.00 0.00 1.52
655 1012 9.896263 GATCTATAACCCAAAAACACGTAAAAA 57.104 29.630 0.00 0.00 0.00 1.94
678 1035 0.456221 AATCACGAGGTAGCGTCCAG 59.544 55.000 0.00 0.02 43.59 3.86
690 1047 2.102438 CGTCCAGCATGCGACACAT 61.102 57.895 20.93 0.00 40.66 3.21
725 1082 3.025176 CGTAGCGCGCTCTTAGCC 61.025 66.667 40.23 17.66 38.18 3.93
726 1083 2.658918 GTAGCGCGCTCTTAGCCC 60.659 66.667 40.23 13.64 38.18 5.19
728 1085 2.498941 TAGCGCGCTCTTAGCCCAT 61.499 57.895 40.23 12.72 38.18 4.00
748 1105 4.262164 CCATCAAAAGTGAACTTTGAGGGG 60.262 45.833 17.10 10.91 44.69 4.79
751 1108 2.755952 AAGTGAACTTTGAGGGGCTT 57.244 45.000 0.00 0.00 30.82 4.35
815 1172 9.249053 TGCACTCCCTATTTTACAAAAATGATA 57.751 29.630 7.67 0.00 0.00 2.15
845 1202 2.227388 GTGGCTGTGAGAAATGAACTGG 59.773 50.000 0.00 0.00 0.00 4.00
929 1286 6.536447 AGCCTCTCAACTATAGTAGTCCTAC 58.464 44.000 5.65 0.00 38.26 3.18
985 1351 5.717119 CTGAAGGTATACACAGTACGGTTT 58.283 41.667 5.01 0.00 0.00 3.27
987 1353 5.927689 TGAAGGTATACACAGTACGGTTTTG 59.072 40.000 5.01 0.00 0.00 2.44
988 1354 5.473066 AGGTATACACAGTACGGTTTTGT 57.527 39.130 5.01 0.00 0.00 2.83
989 1355 5.473039 AGGTATACACAGTACGGTTTTGTC 58.527 41.667 5.01 0.00 0.00 3.18
1131 1497 2.434884 CGCTTCACGTGGAGCCAT 60.435 61.111 36.87 0.00 36.87 4.40
1354 1723 1.537348 CCAAGGTCTTGTTCGTCGACA 60.537 52.381 17.16 0.00 38.85 4.35
1366 1735 1.799994 TCGTCGACAATGACTACGTGA 59.200 47.619 17.16 0.00 36.71 4.35
1436 1805 2.431942 GTTGGTCGCCGTCATCGT 60.432 61.111 0.00 0.00 35.01 3.73
1724 2102 2.047274 CAACGGGTGGACGCTCAT 60.047 61.111 0.00 0.00 37.37 2.90
2466 2856 1.781025 CGTTTCTCGTGGCCAGCAAA 61.781 55.000 5.11 0.00 34.52 3.68
2604 2994 2.736670 AGGTTGACAAGGTGAAGCTT 57.263 45.000 0.00 0.00 34.23 3.74
2613 3003 1.377202 GGTGAAGCTTCGGGATGCA 60.377 57.895 21.11 0.00 34.33 3.96
2701 3091 5.701290 GTGATAAGGGCAATATGGTCTACAC 59.299 44.000 0.00 0.00 0.00 2.90
2705 3095 4.464008 AGGGCAATATGGTCTACACATTG 58.536 43.478 0.00 0.00 0.00 2.82
2706 3096 3.569701 GGGCAATATGGTCTACACATTGG 59.430 47.826 1.23 0.00 0.00 3.16
2708 3098 5.373222 GGCAATATGGTCTACACATTGGTA 58.627 41.667 1.23 0.00 0.00 3.25
2713 3103 9.787532 CAATATGGTCTACACATTGGTAAAAAG 57.212 33.333 0.00 0.00 0.00 2.27
2717 3107 6.424509 TGGTCTACACATTGGTAAAAAGTACG 59.575 38.462 0.00 0.00 0.00 3.67
2719 3109 6.424812 GTCTACACATTGGTAAAAAGTACGGT 59.575 38.462 0.00 0.00 0.00 4.83
2725 3115 6.203338 ACATTGGTAAAAAGTACGGTAGTGTG 59.797 38.462 0.00 0.00 0.00 3.82
2730 3120 5.352643 AAAAAGTACGGTAGTGTGAATGC 57.647 39.130 0.00 0.00 0.00 3.56
2738 3128 3.670625 GGTAGTGTGAATGCTGTACCAA 58.329 45.455 0.00 0.00 31.88 3.67
2739 3129 4.069304 GGTAGTGTGAATGCTGTACCAAA 58.931 43.478 0.00 0.00 31.88 3.28
2743 3133 3.735746 GTGTGAATGCTGTACCAAAAAGC 59.264 43.478 0.00 0.00 37.46 3.51
2753 3143 1.374505 CCAAAAAGCATGGCGTGGG 60.375 57.895 9.08 0.00 0.00 4.61
2774 3164 6.377146 GTGGGTTGAACTATGTATGGATGTTT 59.623 38.462 0.00 0.00 0.00 2.83
2810 3200 7.986085 AGTATCTATGGATGTTAAATGGTGC 57.014 36.000 1.10 0.00 33.71 5.01
2811 3201 7.517320 AGTATCTATGGATGTTAAATGGTGCA 58.483 34.615 1.10 0.00 33.71 4.57
2812 3202 8.166061 AGTATCTATGGATGTTAAATGGTGCAT 58.834 33.333 1.10 0.00 33.71 3.96
2813 3203 7.844493 ATCTATGGATGTTAAATGGTGCATT 57.156 32.000 0.00 0.00 35.39 3.56
2814 3204 8.938801 ATCTATGGATGTTAAATGGTGCATTA 57.061 30.769 0.00 0.00 32.43 1.90
2815 3205 8.165239 TCTATGGATGTTAAATGGTGCATTAC 57.835 34.615 0.00 0.00 32.43 1.89
2816 3206 6.788598 ATGGATGTTAAATGGTGCATTACA 57.211 33.333 0.00 0.00 32.43 2.41
2817 3207 6.206395 TGGATGTTAAATGGTGCATTACAG 57.794 37.500 0.00 0.00 32.43 2.74
2818 3208 5.126869 TGGATGTTAAATGGTGCATTACAGG 59.873 40.000 0.00 0.00 32.43 4.00
2819 3209 5.127031 GGATGTTAAATGGTGCATTACAGGT 59.873 40.000 0.00 0.00 32.43 4.00
2820 3210 6.320164 GGATGTTAAATGGTGCATTACAGGTA 59.680 38.462 0.00 0.00 32.43 3.08
2821 3211 6.503589 TGTTAAATGGTGCATTACAGGTAC 57.496 37.500 0.00 0.00 32.43 3.34
2822 3212 5.416326 TGTTAAATGGTGCATTACAGGTACC 59.584 40.000 2.73 2.73 40.90 3.34
2823 3213 2.729028 ATGGTGCATTACAGGTACCC 57.271 50.000 8.74 0.00 39.92 3.69
2824 3214 1.363246 TGGTGCATTACAGGTACCCA 58.637 50.000 8.74 0.00 39.92 4.51
2825 3215 1.705745 TGGTGCATTACAGGTACCCAA 59.294 47.619 8.74 0.51 39.92 4.12
2826 3216 2.310349 TGGTGCATTACAGGTACCCAAT 59.690 45.455 8.74 3.16 39.92 3.16
2827 3217 3.245443 TGGTGCATTACAGGTACCCAATT 60.245 43.478 8.74 0.00 39.92 2.32
2828 3218 3.380320 GGTGCATTACAGGTACCCAATTC 59.620 47.826 8.74 1.47 35.28 2.17
2829 3219 3.380320 GTGCATTACAGGTACCCAATTCC 59.620 47.826 8.74 1.06 0.00 3.01
2830 3220 2.956333 GCATTACAGGTACCCAATTCCC 59.044 50.000 8.74 0.00 0.00 3.97
2831 3221 3.211045 CATTACAGGTACCCAATTCCCG 58.789 50.000 8.74 0.00 0.00 5.14
2832 3222 1.955451 TACAGGTACCCAATTCCCGT 58.045 50.000 8.74 0.00 0.00 5.28
2833 3223 1.069775 ACAGGTACCCAATTCCCGTT 58.930 50.000 8.74 0.00 0.00 4.44
2834 3224 1.271707 ACAGGTACCCAATTCCCGTTG 60.272 52.381 8.74 0.00 0.00 4.10
2835 3225 1.069775 AGGTACCCAATTCCCGTTGT 58.930 50.000 8.74 0.00 0.00 3.32
2836 3226 1.426215 AGGTACCCAATTCCCGTTGTT 59.574 47.619 8.74 0.00 0.00 2.83
2837 3227 2.158430 AGGTACCCAATTCCCGTTGTTT 60.158 45.455 8.74 0.00 0.00 2.83
2840 3230 1.414550 ACCCAATTCCCGTTGTTTTGG 59.585 47.619 0.00 0.00 37.23 3.28
2845 3235 4.441634 CCAATTCCCGTTGTTTTGGTTGTA 60.442 41.667 0.00 0.00 33.67 2.41
2850 3240 6.015027 TCCCGTTGTTTTGGTTGTAATATG 57.985 37.500 0.00 0.00 0.00 1.78
2851 3241 5.535406 TCCCGTTGTTTTGGTTGTAATATGT 59.465 36.000 0.00 0.00 0.00 2.29
2854 3244 7.866393 CCCGTTGTTTTGGTTGTAATATGTTAA 59.134 33.333 0.00 0.00 0.00 2.01
2906 3296 7.260603 AGATTGAAACTTTGTCACTCCTTTTG 58.739 34.615 0.00 0.00 0.00 2.44
2907 3297 5.323371 TGAAACTTTGTCACTCCTTTTGG 57.677 39.130 0.00 0.00 42.21 3.28
2909 3299 4.983671 AACTTTGTCACTCCTTTTGGAC 57.016 40.909 0.00 0.00 45.19 4.02
2910 3300 3.288092 ACTTTGTCACTCCTTTTGGACC 58.712 45.455 0.00 0.00 45.19 4.46
2911 3301 3.053619 ACTTTGTCACTCCTTTTGGACCT 60.054 43.478 0.00 0.00 45.19 3.85
2912 3302 3.662759 TTGTCACTCCTTTTGGACCTT 57.337 42.857 0.00 0.00 45.19 3.50
2913 3303 3.662759 TGTCACTCCTTTTGGACCTTT 57.337 42.857 0.00 0.00 45.19 3.11
2914 3304 3.551846 TGTCACTCCTTTTGGACCTTTC 58.448 45.455 0.00 0.00 45.19 2.62
2939 3329 6.100404 ACAATGTTGTGGCATTATGAGTTT 57.900 33.333 0.00 0.00 40.49 2.66
2945 3335 4.148079 TGTGGCATTATGAGTTTGTCCAA 58.852 39.130 0.00 0.00 0.00 3.53
2953 3343 7.115378 GCATTATGAGTTTGTCCAAAGTTCAAG 59.885 37.037 0.00 4.44 34.36 3.02
2955 3345 4.016444 TGAGTTTGTCCAAAGTTCAAGCT 58.984 39.130 1.89 0.00 35.88 3.74
2963 3353 3.441496 CAAAGTTCAAGCTTTGCAGGA 57.559 42.857 0.00 0.00 45.57 3.86
2981 3371 4.762251 GCAGGAGTTCTTGACCAAGTTTAT 59.238 41.667 9.31 0.00 39.38 1.40
2982 3372 5.241728 GCAGGAGTTCTTGACCAAGTTTATT 59.758 40.000 9.31 0.00 39.38 1.40
3020 3410 4.576053 CACCATCAAATCACCATATCACGT 59.424 41.667 0.00 0.00 0.00 4.49
3021 3411 5.757808 CACCATCAAATCACCATATCACGTA 59.242 40.000 0.00 0.00 0.00 3.57
3022 3412 5.758296 ACCATCAAATCACCATATCACGTAC 59.242 40.000 0.00 0.00 0.00 3.67
3025 3415 5.972935 TCAAATCACCATATCACGTACACT 58.027 37.500 0.00 0.00 0.00 3.55
3026 3416 6.403049 TCAAATCACCATATCACGTACACTT 58.597 36.000 0.00 0.00 0.00 3.16
3028 3418 8.201464 TCAAATCACCATATCACGTACACTTAT 58.799 33.333 0.00 0.00 0.00 1.73
3029 3419 8.826710 CAAATCACCATATCACGTACACTTATT 58.173 33.333 0.00 0.00 0.00 1.40
3031 3421 8.958119 ATCACCATATCACGTACACTTATTTT 57.042 30.769 0.00 0.00 0.00 1.82
3071 3744 7.031372 TCACGTACACTTTTATGATGTACTCC 58.969 38.462 10.93 0.00 44.22 3.85
3072 3745 6.255020 CACGTACACTTTTATGATGTACTCCC 59.745 42.308 10.93 0.00 44.22 4.30
3074 3747 6.696148 CGTACACTTTTATGATGTACTCCCTC 59.304 42.308 10.93 0.00 44.22 4.30
3075 3748 5.990668 ACACTTTTATGATGTACTCCCTCC 58.009 41.667 0.00 0.00 0.00 4.30
3076 3749 5.050490 CACTTTTATGATGTACTCCCTCCG 58.950 45.833 0.00 0.00 0.00 4.63
3077 3750 4.715297 ACTTTTATGATGTACTCCCTCCGT 59.285 41.667 0.00 0.00 0.00 4.69
3078 3751 5.189145 ACTTTTATGATGTACTCCCTCCGTT 59.811 40.000 0.00 0.00 0.00 4.44
3079 3752 4.931661 TTATGATGTACTCCCTCCGTTC 57.068 45.455 0.00 0.00 0.00 3.95
3080 3753 1.481871 TGATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
3081 3754 1.006758 TGATGTACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
3082 3755 2.242965 TGATGTACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
3083 3756 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3084 3757 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3085 3758 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3086 3759 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3087 3760 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3088 3761 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
3089 3762 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
3090 3763 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3091 3764 5.011840 ACTCCCTCCGTTCCTAAATATAAGC 59.988 44.000 0.00 0.00 0.00 3.09
3092 3765 4.285260 TCCCTCCGTTCCTAAATATAAGCC 59.715 45.833 0.00 0.00 0.00 4.35
3093 3766 4.286291 CCCTCCGTTCCTAAATATAAGCCT 59.714 45.833 0.00 0.00 0.00 4.58
3094 3767 5.221864 CCCTCCGTTCCTAAATATAAGCCTT 60.222 44.000 0.00 0.00 0.00 4.35
3095 3768 6.296803 CCTCCGTTCCTAAATATAAGCCTTT 58.703 40.000 0.00 0.00 0.00 3.11
3096 3769 6.204882 CCTCCGTTCCTAAATATAAGCCTTTG 59.795 42.308 0.00 0.00 0.00 2.77
3097 3770 6.655930 TCCGTTCCTAAATATAAGCCTTTGT 58.344 36.000 0.00 0.00 0.00 2.83
3098 3771 7.114095 TCCGTTCCTAAATATAAGCCTTTGTT 58.886 34.615 0.00 0.00 0.00 2.83
3099 3772 7.066525 TCCGTTCCTAAATATAAGCCTTTGTTG 59.933 37.037 0.00 0.00 0.00 3.33
3100 3773 7.066525 CCGTTCCTAAATATAAGCCTTTGTTGA 59.933 37.037 0.00 0.00 0.00 3.18
3101 3774 8.122952 CGTTCCTAAATATAAGCCTTTGTTGAG 58.877 37.037 0.00 0.00 0.00 3.02
3102 3775 9.174166 GTTCCTAAATATAAGCCTTTGTTGAGA 57.826 33.333 0.00 0.00 0.00 3.27
3103 3776 9.920946 TTCCTAAATATAAGCCTTTGTTGAGAT 57.079 29.630 0.00 0.00 0.00 2.75
3104 3777 9.920946 TCCTAAATATAAGCCTTTGTTGAGATT 57.079 29.630 0.00 0.00 0.00 2.40
3108 3781 9.860898 AAATATAAGCCTTTGTTGAGATTTCAC 57.139 29.630 0.00 0.00 31.71 3.18
3109 3782 8.814038 ATATAAGCCTTTGTTGAGATTTCACT 57.186 30.769 0.00 0.00 31.71 3.41
3110 3783 9.905713 ATATAAGCCTTTGTTGAGATTTCACTA 57.094 29.630 0.00 0.00 31.71 2.74
3111 3784 8.814038 ATAAGCCTTTGTTGAGATTTCACTAT 57.186 30.769 0.00 0.00 31.71 2.12
3112 3785 6.506500 AGCCTTTGTTGAGATTTCACTATG 57.493 37.500 0.00 0.00 31.71 2.23
3113 3786 6.240894 AGCCTTTGTTGAGATTTCACTATGA 58.759 36.000 0.00 0.00 31.71 2.15
3114 3787 6.716628 AGCCTTTGTTGAGATTTCACTATGAA 59.283 34.615 0.00 0.00 34.03 2.57
3115 3788 6.803807 GCCTTTGTTGAGATTTCACTATGAAC 59.196 38.462 0.00 0.00 35.89 3.18
3116 3789 7.308435 CCTTTGTTGAGATTTCACTATGAACC 58.692 38.462 0.00 0.00 35.89 3.62
3117 3790 7.040478 CCTTTGTTGAGATTTCACTATGAACCA 60.040 37.037 0.00 0.00 35.89 3.67
3118 3791 6.801539 TGTTGAGATTTCACTATGAACCAC 57.198 37.500 0.00 0.00 35.89 4.16
3119 3792 6.295249 TGTTGAGATTTCACTATGAACCACA 58.705 36.000 0.00 0.00 35.89 4.17
3120 3793 6.942005 TGTTGAGATTTCACTATGAACCACAT 59.058 34.615 0.00 0.00 35.89 3.21
3121 3794 8.100164 TGTTGAGATTTCACTATGAACCACATA 58.900 33.333 0.00 0.00 35.89 2.29
3122 3795 9.113838 GTTGAGATTTCACTATGAACCACATAT 57.886 33.333 0.00 0.00 40.18 1.78
3123 3796 9.685276 TTGAGATTTCACTATGAACCACATATT 57.315 29.630 0.00 0.00 40.18 1.28
3124 3797 9.112725 TGAGATTTCACTATGAACCACATATTG 57.887 33.333 0.00 0.00 40.86 1.90
3125 3798 9.330063 GAGATTTCACTATGAACCACATATTGA 57.670 33.333 0.00 0.00 43.98 2.57
3126 3799 9.857656 AGATTTCACTATGAACCACATATTGAT 57.142 29.630 0.00 0.00 44.54 2.57
3127 3800 9.888878 GATTTCACTATGAACCACATATTGATG 57.111 33.333 0.00 0.00 44.54 3.07
3128 3801 8.806429 TTTCACTATGAACCACATATTGATGT 57.194 30.769 0.00 0.00 44.54 3.06
3129 3802 9.898152 TTTCACTATGAACCACATATTGATGTA 57.102 29.630 0.00 0.00 44.54 2.29
3137 3810 9.452287 TGAACCACATATTGATGTATATGGATG 57.548 33.333 0.00 0.00 44.82 3.51
3138 3811 7.870509 ACCACATATTGATGTATATGGATGC 57.129 36.000 0.00 0.00 44.82 3.91
3139 3812 7.404481 ACCACATATTGATGTATATGGATGCA 58.596 34.615 0.00 0.00 44.82 3.96
3140 3813 8.057011 ACCACATATTGATGTATATGGATGCAT 58.943 33.333 4.68 4.68 44.82 3.96
3141 3814 8.909923 CCACATATTGATGTATATGGATGCATT 58.090 33.333 4.56 0.00 44.82 3.56
3146 3819 8.873186 ATTGATGTATATGGATGCATTTGAGA 57.127 30.769 4.56 0.00 38.38 3.27
3147 3820 7.916914 TGATGTATATGGATGCATTTGAGAG 57.083 36.000 4.56 0.00 38.38 3.20
3148 3821 7.455891 TGATGTATATGGATGCATTTGAGAGT 58.544 34.615 4.56 0.00 38.38 3.24
3149 3822 7.389607 TGATGTATATGGATGCATTTGAGAGTG 59.610 37.037 4.56 0.00 38.38 3.51
3150 3823 6.594744 TGTATATGGATGCATTTGAGAGTGT 58.405 36.000 4.56 0.00 0.00 3.55
3151 3824 7.734942 TGTATATGGATGCATTTGAGAGTGTA 58.265 34.615 4.56 0.00 0.00 2.90
3152 3825 7.874528 TGTATATGGATGCATTTGAGAGTGTAG 59.125 37.037 4.56 0.00 0.00 2.74
3153 3826 4.824479 TGGATGCATTTGAGAGTGTAGA 57.176 40.909 0.00 0.00 0.00 2.59
3154 3827 5.363562 TGGATGCATTTGAGAGTGTAGAT 57.636 39.130 0.00 0.00 0.00 1.98
3155 3828 5.748402 TGGATGCATTTGAGAGTGTAGATT 58.252 37.500 0.00 0.00 0.00 2.40
3156 3829 5.819379 TGGATGCATTTGAGAGTGTAGATTC 59.181 40.000 0.00 0.00 0.00 2.52
3157 3830 5.819379 GGATGCATTTGAGAGTGTAGATTCA 59.181 40.000 0.00 0.00 0.00 2.57
3158 3831 6.238320 GGATGCATTTGAGAGTGTAGATTCAC 60.238 42.308 0.00 0.00 38.46 3.18
3170 3843 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
3171 3844 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
3172 3845 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
3173 3846 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
3174 3847 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
3175 3848 9.031360 GTAGATTCACTCATTTTGCTTCGTATA 57.969 33.333 0.00 0.00 0.00 1.47
3176 3849 8.668510 AGATTCACTCATTTTGCTTCGTATAT 57.331 30.769 0.00 0.00 0.00 0.86
3177 3850 9.764363 AGATTCACTCATTTTGCTTCGTATATA 57.236 29.630 0.00 0.00 0.00 0.86
3179 3852 8.942338 TTCACTCATTTTGCTTCGTATATAGT 57.058 30.769 0.00 0.00 0.00 2.12
3180 3853 8.575565 TCACTCATTTTGCTTCGTATATAGTC 57.424 34.615 0.00 0.00 0.00 2.59
3181 3854 7.652105 TCACTCATTTTGCTTCGTATATAGTCC 59.348 37.037 0.00 0.00 0.00 3.85
3182 3855 7.438160 CACTCATTTTGCTTCGTATATAGTCCA 59.562 37.037 0.00 0.00 0.00 4.02
3183 3856 8.150945 ACTCATTTTGCTTCGTATATAGTCCAT 58.849 33.333 0.00 0.00 0.00 3.41
3184 3857 9.639601 CTCATTTTGCTTCGTATATAGTCCATA 57.360 33.333 0.00 0.00 0.00 2.74
3185 3858 9.639601 TCATTTTGCTTCGTATATAGTCCATAG 57.360 33.333 0.00 0.00 0.00 2.23
3186 3859 9.424319 CATTTTGCTTCGTATATAGTCCATAGT 57.576 33.333 0.00 0.00 0.00 2.12
3187 3860 8.812147 TTTTGCTTCGTATATAGTCCATAGTG 57.188 34.615 0.00 0.00 0.00 2.74
3188 3861 7.754851 TTGCTTCGTATATAGTCCATAGTGA 57.245 36.000 0.00 0.00 0.00 3.41
3189 3862 7.754851 TGCTTCGTATATAGTCCATAGTGAA 57.245 36.000 0.00 0.00 0.00 3.18
3190 3863 8.173542 TGCTTCGTATATAGTCCATAGTGAAA 57.826 34.615 0.00 0.00 0.00 2.69
3191 3864 8.803235 TGCTTCGTATATAGTCCATAGTGAAAT 58.197 33.333 0.00 0.00 0.00 2.17
3192 3865 9.291664 GCTTCGTATATAGTCCATAGTGAAATC 57.708 37.037 0.00 0.00 0.00 2.17
3195 3868 9.961264 TCGTATATAGTCCATAGTGAAATCTCT 57.039 33.333 0.00 0.00 0.00 3.10
3203 3876 9.660180 AGTCCATAGTGAAATCTCTAAAAAGAC 57.340 33.333 0.00 0.00 0.00 3.01
3204 3877 9.660180 GTCCATAGTGAAATCTCTAAAAAGACT 57.340 33.333 0.00 0.00 0.00 3.24
3222 3895 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3223 3896 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3224 3897 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3225 3898 7.017531 AGACTTATATTTAGGAACGGAGGGAT 58.982 38.462 0.00 0.00 0.00 3.85
3226 3899 7.513091 AGACTTATATTTAGGAACGGAGGGATT 59.487 37.037 0.00 0.00 0.00 3.01
3227 3900 8.731591 ACTTATATTTAGGAACGGAGGGATTA 57.268 34.615 0.00 0.00 0.00 1.75
3228 3901 9.335211 ACTTATATTTAGGAACGGAGGGATTAT 57.665 33.333 0.00 0.00 0.00 1.28
3231 3904 5.961398 TTTAGGAACGGAGGGATTATTCA 57.039 39.130 0.00 0.00 0.00 2.57
3232 3905 6.509523 TTTAGGAACGGAGGGATTATTCAT 57.490 37.500 0.00 0.00 0.00 2.57
3233 3906 6.509523 TTAGGAACGGAGGGATTATTCATT 57.490 37.500 0.00 0.00 0.00 2.57
3234 3907 5.388599 AGGAACGGAGGGATTATTCATTT 57.611 39.130 0.00 0.00 0.00 2.32
3235 3908 6.509523 AGGAACGGAGGGATTATTCATTTA 57.490 37.500 0.00 0.00 0.00 1.40
3236 3909 6.906848 AGGAACGGAGGGATTATTCATTTAA 58.093 36.000 0.00 0.00 0.00 1.52
3237 3910 7.526918 AGGAACGGAGGGATTATTCATTTAAT 58.473 34.615 0.00 0.00 0.00 1.40
3238 3911 8.004801 AGGAACGGAGGGATTATTCATTTAATT 58.995 33.333 0.00 0.00 0.00 1.40
3266 3939 7.843490 TCTCAGAAATAAATTAGTTGGACCG 57.157 36.000 0.00 0.00 0.00 4.79
3271 3944 1.084289 AAATTAGTTGGACCGAGCGC 58.916 50.000 0.00 0.00 0.00 5.92
3272 3945 0.036765 AATTAGTTGGACCGAGCGCA 60.037 50.000 11.47 0.00 0.00 6.09
3273 3946 0.739813 ATTAGTTGGACCGAGCGCAC 60.740 55.000 11.47 0.96 0.00 5.34
3274 3947 2.089887 TTAGTTGGACCGAGCGCACA 62.090 55.000 11.47 0.00 0.00 4.57
3277 3950 3.741830 TTGGACCGAGCGCACACAA 62.742 57.895 11.47 3.64 0.00 3.33
3278 3951 2.742372 GGACCGAGCGCACACAAT 60.742 61.111 11.47 0.00 0.00 2.71
3287 3960 4.374906 CCGAGCGCACACAATTTTAAAAAG 60.375 41.667 11.47 3.65 0.00 2.27
3325 3998 9.494271 TTGCTATATACTCCATGTTCTTGAATC 57.506 33.333 0.00 0.00 0.00 2.52
3347 4020 4.408596 TCCATGCAGTCACCATCTGTAATA 59.591 41.667 0.00 0.00 35.60 0.98
3349 4022 5.453762 CCATGCAGTCACCATCTGTAATAGA 60.454 44.000 0.00 0.00 40.37 1.98
3354 4027 6.478344 GCAGTCACCATCTGTAATAGAAAGAG 59.522 42.308 0.00 0.00 39.30 2.85
3372 4045 3.652055 AGAGCCCTCAGTACATTCTCAT 58.348 45.455 0.00 0.00 0.00 2.90
3379 4052 5.757320 CCCTCAGTACATTCTCATTGATGTC 59.243 44.000 0.00 0.00 0.00 3.06
3381 4054 7.046652 CCTCAGTACATTCTCATTGATGTCTT 58.953 38.462 0.00 0.00 0.00 3.01
3399 4072 2.274948 TTAGCCTCGAGCCCCGACTA 62.275 60.000 6.99 0.00 45.47 2.59
3400 4073 2.065470 TAGCCTCGAGCCCCGACTAT 62.065 60.000 6.99 0.00 45.47 2.12
3408 4081 2.557056 CGAGCCCCGACTATGAGATTTA 59.443 50.000 0.00 0.00 41.76 1.40
3417 4090 7.148407 CCCCGACTATGAGATTTAAATATGTGC 60.148 40.741 0.00 0.00 0.00 4.57
3433 4106 8.428186 AAATATGTGCCATATTTTGCTTTCTG 57.572 30.769 19.27 0.00 32.12 3.02
3437 4110 5.709631 TGTGCCATATTTTGCTTTCTGTAGA 59.290 36.000 0.00 0.00 0.00 2.59
3442 4115 7.761249 GCCATATTTTGCTTTCTGTAGACATTT 59.239 33.333 0.00 0.00 0.00 2.32
3488 4161 4.917906 AAGCTAGAGTTGAACTTCCCAT 57.082 40.909 0.00 0.00 0.00 4.00
3491 4164 4.161377 AGCTAGAGTTGAACTTCCCATCTC 59.839 45.833 0.00 0.00 33.03 2.75
3543 4223 5.131142 AGGTTACTTATATCAAGGCAGCAGT 59.869 40.000 0.00 0.00 0.00 4.40
3551 4232 1.956477 TCAAGGCAGCAGTCCTTTTTC 59.044 47.619 0.00 0.00 41.73 2.29
3567 4248 3.518992 TTTTCCCCCTTTAGACCAGTG 57.481 47.619 0.00 0.00 0.00 3.66
3584 4265 3.058432 CCAGTGAGCAACATTGAGAAGTG 60.058 47.826 7.70 0.00 38.27 3.16
3607 4288 6.399204 GCAACTTAAAATGCAAATCCTCAG 57.601 37.500 7.15 0.00 42.12 3.35
3611 4292 5.188359 ACTTAAAATGCAAATCCTCAGCCAT 59.812 36.000 0.00 0.00 0.00 4.40
3625 4306 8.632906 ATCCTCAGCCATTTAAGAATTATCTG 57.367 34.615 0.00 0.00 35.59 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 0.109597 GCCAAGGCGATGTTTGTCTG 60.110 55.000 0.00 0.00 0.00 3.51
81 83 0.329261 TCCTGTTCCTCATGGCCAAG 59.671 55.000 10.96 5.19 0.00 3.61
98 100 1.067060 GCCACACCAAGACTTGTTTCC 59.933 52.381 14.03 0.00 0.00 3.13
108 110 2.730094 GTTGCAGGCCACACCAAG 59.270 61.111 5.01 0.00 43.14 3.61
125 127 6.158175 AGAACTCGTCTCAATTCAATTTCG 57.842 37.500 0.00 0.00 0.00 3.46
137 139 2.846039 TTCGGCATAGAACTCGTCTC 57.154 50.000 0.00 0.00 37.84 3.36
204 210 8.697846 AGATGTAAAACATTTCGAATAGACGA 57.302 30.769 0.00 0.00 39.27 4.20
214 220 8.372521 CGCATGGTTTAAGATGTAAAACATTTC 58.627 33.333 6.63 2.68 40.69 2.17
222 228 4.580868 TGGACGCATGGTTTAAGATGTAA 58.419 39.130 0.00 0.00 0.00 2.41
223 229 4.209307 TGGACGCATGGTTTAAGATGTA 57.791 40.909 0.00 0.00 0.00 2.29
224 230 3.066291 TGGACGCATGGTTTAAGATGT 57.934 42.857 0.00 0.00 0.00 3.06
225 231 4.433186 TTTGGACGCATGGTTTAAGATG 57.567 40.909 0.00 0.00 0.00 2.90
226 232 4.201910 CGATTTGGACGCATGGTTTAAGAT 60.202 41.667 0.00 0.00 0.00 2.40
227 233 3.126171 CGATTTGGACGCATGGTTTAAGA 59.874 43.478 0.00 0.00 0.00 2.10
228 234 3.119990 ACGATTTGGACGCATGGTTTAAG 60.120 43.478 0.00 0.00 0.00 1.85
229 235 2.814919 ACGATTTGGACGCATGGTTTAA 59.185 40.909 0.00 0.00 0.00 1.52
230 236 2.160615 CACGATTTGGACGCATGGTTTA 59.839 45.455 0.00 0.00 0.00 2.01
231 237 1.068610 CACGATTTGGACGCATGGTTT 60.069 47.619 0.00 0.00 0.00 3.27
232 238 0.521291 CACGATTTGGACGCATGGTT 59.479 50.000 0.00 0.00 0.00 3.67
233 239 0.321210 TCACGATTTGGACGCATGGT 60.321 50.000 0.00 0.00 0.00 3.55
234 240 0.801872 TTCACGATTTGGACGCATGG 59.198 50.000 0.00 0.00 0.00 3.66
235 241 1.465689 GGTTCACGATTTGGACGCATG 60.466 52.381 0.00 0.00 33.88 4.06
236 242 0.802494 GGTTCACGATTTGGACGCAT 59.198 50.000 0.00 0.00 33.88 4.73
237 243 2.240230 GGTTCACGATTTGGACGCA 58.760 52.632 0.00 0.00 33.88 5.24
238 244 5.906311 AAAACGGTTCACGATTTGGACGC 62.906 47.826 0.00 0.00 44.35 5.19
239 245 2.286536 AAAACGGTTCACGATTTGGACG 60.287 45.455 0.00 0.00 44.35 4.79
240 246 3.242804 TGAAAACGGTTCACGATTTGGAC 60.243 43.478 0.00 0.00 45.71 4.02
241 247 2.943690 TGAAAACGGTTCACGATTTGGA 59.056 40.909 0.00 0.00 45.71 3.53
242 248 3.040099 GTGAAAACGGTTCACGATTTGG 58.960 45.455 15.67 0.00 45.71 3.28
249 255 1.532298 CCAACGGTGAAAACGGTTCAC 60.532 52.381 20.21 20.21 45.89 3.18
263 269 1.708027 GACGCGAGAAATCCAACGG 59.292 57.895 15.93 0.00 0.00 4.44
265 271 2.733127 TCGACGCGAGAAATCCAAC 58.267 52.632 15.93 0.00 0.00 3.77
277 283 5.511088 TTTAGTTTTTGAGATCTCGACGC 57.489 39.130 17.76 8.50 0.00 5.19
278 284 7.148639 TGGAATTTAGTTTTTGAGATCTCGACG 60.149 37.037 17.76 0.00 0.00 5.12
279 285 8.029642 TGGAATTTAGTTTTTGAGATCTCGAC 57.970 34.615 17.76 12.82 0.00 4.20
280 286 8.668353 CATGGAATTTAGTTTTTGAGATCTCGA 58.332 33.333 17.76 13.50 0.00 4.04
281 287 8.454106 ACATGGAATTTAGTTTTTGAGATCTCG 58.546 33.333 17.76 0.00 0.00 4.04
297 303 8.798402 TCGTTGAAACCTAATAACATGGAATTT 58.202 29.630 0.00 0.00 0.00 1.82
298 304 8.343168 TCGTTGAAACCTAATAACATGGAATT 57.657 30.769 0.00 0.00 0.00 2.17
299 305 7.931578 TCGTTGAAACCTAATAACATGGAAT 57.068 32.000 0.00 0.00 0.00 3.01
300 306 7.228906 TGTTCGTTGAAACCTAATAACATGGAA 59.771 33.333 0.00 0.00 0.00 3.53
301 307 6.711194 TGTTCGTTGAAACCTAATAACATGGA 59.289 34.615 0.00 0.00 0.00 3.41
302 308 6.904498 TGTTCGTTGAAACCTAATAACATGG 58.096 36.000 0.00 0.00 0.00 3.66
303 309 8.849490 CAATGTTCGTTGAAACCTAATAACATG 58.151 33.333 0.00 0.00 36.66 3.21
304 310 8.573035 ACAATGTTCGTTGAAACCTAATAACAT 58.427 29.630 11.07 0.00 37.79 2.71
305 311 7.932335 ACAATGTTCGTTGAAACCTAATAACA 58.068 30.769 11.07 0.00 33.37 2.41
306 312 8.791355 AACAATGTTCGTTGAAACCTAATAAC 57.209 30.769 11.07 0.00 33.37 1.89
307 313 9.804758 AAAACAATGTTCGTTGAAACCTAATAA 57.195 25.926 11.07 0.00 33.37 1.40
308 314 9.804758 AAAAACAATGTTCGTTGAAACCTAATA 57.195 25.926 11.07 0.00 33.37 0.98
309 315 8.710835 AAAAACAATGTTCGTTGAAACCTAAT 57.289 26.923 11.07 0.00 33.37 1.73
310 316 9.635520 TTAAAAACAATGTTCGTTGAAACCTAA 57.364 25.926 11.07 1.48 33.37 2.69
311 317 9.635520 TTTAAAAACAATGTTCGTTGAAACCTA 57.364 25.926 11.07 0.00 33.37 3.08
312 318 8.436970 GTTTAAAAACAATGTTCGTTGAAACCT 58.563 29.630 10.37 0.00 38.74 3.50
313 319 8.436970 AGTTTAAAAACAATGTTCGTTGAAACC 58.563 29.630 15.01 3.97 41.30 3.27
314 320 9.455559 GAGTTTAAAAACAATGTTCGTTGAAAC 57.544 29.630 12.40 12.40 41.30 2.78
315 321 9.413048 AGAGTTTAAAAACAATGTTCGTTGAAA 57.587 25.926 11.07 0.00 41.30 2.69
316 322 8.855279 CAGAGTTTAAAAACAATGTTCGTTGAA 58.145 29.630 11.07 0.00 41.30 2.69
317 323 7.486551 CCAGAGTTTAAAAACAATGTTCGTTGA 59.513 33.333 11.07 0.00 41.30 3.18
318 324 7.486551 TCCAGAGTTTAAAAACAATGTTCGTTG 59.513 33.333 0.00 3.58 41.30 4.10
319 325 7.540299 TCCAGAGTTTAAAAACAATGTTCGTT 58.460 30.769 0.00 0.00 41.30 3.85
320 326 7.090953 TCCAGAGTTTAAAAACAATGTTCGT 57.909 32.000 0.00 0.00 41.30 3.85
321 327 7.979115 TTCCAGAGTTTAAAAACAATGTTCG 57.021 32.000 0.00 0.00 41.30 3.95
329 335 7.815398 TTCGGTTTTTCCAGAGTTTAAAAAC 57.185 32.000 12.05 12.05 45.61 2.43
330 336 9.438228 AAATTCGGTTTTTCCAGAGTTTAAAAA 57.562 25.926 0.00 0.00 32.24 1.94
331 337 9.438228 AAAATTCGGTTTTTCCAGAGTTTAAAA 57.562 25.926 0.00 0.00 36.65 1.52
332 338 9.438228 AAAAATTCGGTTTTTCCAGAGTTTAAA 57.562 25.926 6.42 0.00 44.57 1.52
333 339 8.874816 CAAAAATTCGGTTTTTCCAGAGTTTAA 58.125 29.630 8.55 0.00 45.70 1.52
334 340 8.035984 ACAAAAATTCGGTTTTTCCAGAGTTTA 58.964 29.630 8.55 0.00 45.70 2.01
335 341 6.876789 ACAAAAATTCGGTTTTTCCAGAGTTT 59.123 30.769 8.55 0.00 45.70 2.66
336 342 6.403049 ACAAAAATTCGGTTTTTCCAGAGTT 58.597 32.000 8.55 0.00 45.70 3.01
337 343 5.972935 ACAAAAATTCGGTTTTTCCAGAGT 58.027 33.333 8.55 3.08 45.70 3.24
338 344 5.462068 GGACAAAAATTCGGTTTTTCCAGAG 59.538 40.000 8.55 2.62 45.70 3.35
339 345 5.353111 GGACAAAAATTCGGTTTTTCCAGA 58.647 37.500 8.55 0.00 45.70 3.86
340 346 4.509970 GGGACAAAAATTCGGTTTTTCCAG 59.490 41.667 14.21 6.83 45.70 3.86
341 347 4.443621 GGGACAAAAATTCGGTTTTTCCA 58.556 39.130 14.21 0.00 45.70 3.53
342 348 3.810941 GGGGACAAAAATTCGGTTTTTCC 59.189 43.478 8.55 8.33 45.70 3.13
343 349 4.443621 TGGGGACAAAAATTCGGTTTTTC 58.556 39.130 8.55 1.61 45.70 2.29
369 375 3.491792 GGCACAGGTCGAAAATGGAAAAA 60.492 43.478 0.00 0.00 0.00 1.94
370 376 2.035321 GGCACAGGTCGAAAATGGAAAA 59.965 45.455 0.00 0.00 0.00 2.29
371 377 1.611491 GGCACAGGTCGAAAATGGAAA 59.389 47.619 0.00 0.00 0.00 3.13
372 378 1.202879 AGGCACAGGTCGAAAATGGAA 60.203 47.619 0.00 0.00 0.00 3.53
373 379 0.400213 AGGCACAGGTCGAAAATGGA 59.600 50.000 0.00 0.00 0.00 3.41
374 380 0.804989 GAGGCACAGGTCGAAAATGG 59.195 55.000 0.00 0.00 0.00 3.16
375 381 1.734465 GAGAGGCACAGGTCGAAAATG 59.266 52.381 0.00 0.00 0.00 2.32
376 382 1.673033 CGAGAGGCACAGGTCGAAAAT 60.673 52.381 0.00 0.00 34.28 1.82
377 383 0.319555 CGAGAGGCACAGGTCGAAAA 60.320 55.000 0.00 0.00 34.28 2.29
378 384 1.289066 CGAGAGGCACAGGTCGAAA 59.711 57.895 0.00 0.00 34.28 3.46
379 385 2.962569 CGAGAGGCACAGGTCGAA 59.037 61.111 0.00 0.00 34.28 3.71
380 386 3.749064 GCGAGAGGCACAGGTCGA 61.749 66.667 0.00 0.00 42.87 4.20
382 388 4.803426 CCGCGAGAGGCACAGGTC 62.803 72.222 8.23 0.00 43.84 3.85
384 390 3.997064 CTTCCGCGAGAGGCACAGG 62.997 68.421 8.23 0.00 43.84 4.00
385 391 2.507992 CTTCCGCGAGAGGCACAG 60.508 66.667 8.23 0.00 43.84 3.66
432 786 2.315925 TCGCTTCTCCTAAAGGCATG 57.684 50.000 0.00 0.00 34.44 4.06
433 787 3.567478 ATTCGCTTCTCCTAAAGGCAT 57.433 42.857 0.00 0.00 34.44 4.40
434 788 4.141711 ACATATTCGCTTCTCCTAAAGGCA 60.142 41.667 0.00 0.00 34.44 4.75
436 790 4.212214 GCACATATTCGCTTCTCCTAAAGG 59.788 45.833 0.00 0.00 0.00 3.11
439 793 3.388024 AGGCACATATTCGCTTCTCCTAA 59.612 43.478 0.00 0.00 0.00 2.69
440 794 2.965831 AGGCACATATTCGCTTCTCCTA 59.034 45.455 0.00 0.00 0.00 2.94
450 804 5.357257 TCCTTCTACGAAAGGCACATATTC 58.643 41.667 10.00 0.00 44.66 1.75
454 808 3.695830 TTCCTTCTACGAAAGGCACAT 57.304 42.857 10.00 0.00 44.66 3.21
456 810 4.823790 TTTTTCCTTCTACGAAAGGCAC 57.176 40.909 10.00 0.00 44.66 5.01
500 854 3.491208 GCTTCCATGAGAGGCACAT 57.509 52.632 11.62 0.00 46.54 3.21
508 862 3.368739 GGGGACAAATTTGCTTCCATGAG 60.369 47.826 22.54 0.00 0.00 2.90
510 864 2.355007 GGGGGACAAATTTGCTTCCATG 60.355 50.000 22.54 0.00 0.00 3.66
627 984 5.481105 ACGTGTTTTTGGGTTATAGATCGA 58.519 37.500 0.00 0.00 0.00 3.59
628 985 5.789710 ACGTGTTTTTGGGTTATAGATCG 57.210 39.130 0.00 0.00 0.00 3.69
629 986 9.896263 TTTTTACGTGTTTTTGGGTTATAGATC 57.104 29.630 0.00 0.00 0.00 2.75
665 1022 1.884926 GCATGCTGGACGCTACCTC 60.885 63.158 11.37 0.00 40.11 3.85
669 1026 2.202743 GTCGCATGCTGGACGCTA 60.203 61.111 17.13 0.00 40.11 4.26
681 1038 2.906939 GCTGTTGCCATGTGTCGCA 61.907 57.895 0.00 0.00 0.00 5.10
690 1047 2.357881 CGCTCTGAGCTGTTGCCA 60.358 61.111 25.59 0.00 39.60 4.92
715 1072 2.096496 CACTTTTGATGGGCTAAGAGCG 59.904 50.000 0.00 0.00 43.62 5.03
724 1081 4.262164 CCCTCAAAGTTCACTTTTGATGGG 60.262 45.833 2.01 14.75 43.07 4.00
725 1082 4.262164 CCCCTCAAAGTTCACTTTTGATGG 60.262 45.833 12.30 12.30 43.07 3.51
726 1083 4.797275 GCCCCTCAAAGTTCACTTTTGATG 60.797 45.833 2.01 2.55 43.07 3.07
728 1085 2.693074 GCCCCTCAAAGTTCACTTTTGA 59.307 45.455 2.01 3.98 43.07 2.69
759 1116 3.200165 AGAGCAACTAATTGAGGGTACCC 59.800 47.826 24.65 24.65 43.13 3.69
815 1172 3.213206 TCTCACAGCCACTCAAAACAT 57.787 42.857 0.00 0.00 0.00 2.71
817 1174 4.036734 TCATTTCTCACAGCCACTCAAAAC 59.963 41.667 0.00 0.00 0.00 2.43
845 1202 0.106819 TAGGGACTAGTCGCCTGGAC 60.107 60.000 30.19 9.91 42.94 4.02
929 1286 6.036735 TCAGTTGTTTTTCGTCCTCAGTTAAG 59.963 38.462 0.00 0.00 0.00 1.85
930 1287 5.875910 TCAGTTGTTTTTCGTCCTCAGTTAA 59.124 36.000 0.00 0.00 0.00 2.01
985 1351 1.207089 CTCCATTACCTCCAGCGACAA 59.793 52.381 0.00 0.00 0.00 3.18
987 1353 1.112113 TCTCCATTACCTCCAGCGAC 58.888 55.000 0.00 0.00 0.00 5.19
988 1354 1.757118 CTTCTCCATTACCTCCAGCGA 59.243 52.381 0.00 0.00 0.00 4.93
989 1355 1.808133 GCTTCTCCATTACCTCCAGCG 60.808 57.143 0.00 0.00 0.00 5.18
1131 1497 4.525576 CGGCAGCGCTCGTACGTA 62.526 66.667 16.05 0.00 34.88 3.57
1354 1723 0.179134 GCGAGGCTCACGTAGTCATT 60.179 55.000 15.95 0.00 41.61 2.57
1420 1789 2.126228 GACGATGACGGCGACCAA 60.126 61.111 16.62 0.00 44.46 3.67
1436 1805 1.138859 CAGTGGGCCTGTCAATATCGA 59.861 52.381 4.53 0.00 36.37 3.59
1724 2102 4.802051 GCGCTGCCATTCCCCAGA 62.802 66.667 0.00 0.00 0.00 3.86
2157 2547 2.815308 GCGATCTCACCCACGGAT 59.185 61.111 0.00 0.00 0.00 4.18
2466 2856 2.348998 CAGACCTCGGCAGCCTTT 59.651 61.111 10.54 0.00 0.00 3.11
2516 2906 3.511595 CCATGAAGCGCGCCATGT 61.512 61.111 33.31 18.60 38.69 3.21
2577 2967 1.569072 ACCTTGTCAACCTTTCCCAGT 59.431 47.619 0.00 0.00 0.00 4.00
2613 3003 1.536943 GGAGCACAAGACTCCGGACT 61.537 60.000 0.00 0.00 44.10 3.85
2701 3091 6.424509 TCACACTACCGTACTTTTTACCAATG 59.575 38.462 0.00 0.00 0.00 2.82
2705 3095 6.619232 GCATTCACACTACCGTACTTTTTACC 60.619 42.308 0.00 0.00 0.00 2.85
2706 3096 6.146673 AGCATTCACACTACCGTACTTTTTAC 59.853 38.462 0.00 0.00 0.00 2.01
2708 3098 5.049680 CAGCATTCACACTACCGTACTTTTT 60.050 40.000 0.00 0.00 0.00 1.94
2713 3103 2.955614 ACAGCATTCACACTACCGTAC 58.044 47.619 0.00 0.00 0.00 3.67
2717 3107 3.328382 TGGTACAGCATTCACACTACC 57.672 47.619 0.00 0.00 0.00 3.18
2719 3109 5.278266 GCTTTTTGGTACAGCATTCACACTA 60.278 40.000 0.00 0.00 42.39 2.74
2730 3120 1.269448 ACGCCATGCTTTTTGGTACAG 59.731 47.619 0.00 0.00 42.39 2.74
2738 3128 1.112315 TCAACCCACGCCATGCTTTT 61.112 50.000 0.00 0.00 0.00 2.27
2739 3129 1.112315 TTCAACCCACGCCATGCTTT 61.112 50.000 0.00 0.00 0.00 3.51
2743 3133 1.401552 CATAGTTCAACCCACGCCATG 59.598 52.381 0.00 0.00 0.00 3.66
2784 3174 9.502091 GCACCATTTAACATCCATAGATACTTA 57.498 33.333 0.00 0.00 0.00 2.24
2785 3175 7.998383 TGCACCATTTAACATCCATAGATACTT 59.002 33.333 0.00 0.00 0.00 2.24
2786 3176 7.517320 TGCACCATTTAACATCCATAGATACT 58.483 34.615 0.00 0.00 0.00 2.12
2787 3177 7.744087 TGCACCATTTAACATCCATAGATAC 57.256 36.000 0.00 0.00 0.00 2.24
2788 3178 8.938801 AATGCACCATTTAACATCCATAGATA 57.061 30.769 0.00 0.00 28.76 1.98
2789 3179 7.844493 AATGCACCATTTAACATCCATAGAT 57.156 32.000 0.00 0.00 28.76 1.98
2790 3180 7.777440 TGTAATGCACCATTTAACATCCATAGA 59.223 33.333 0.00 0.00 35.54 1.98
2791 3181 7.939782 TGTAATGCACCATTTAACATCCATAG 58.060 34.615 0.00 0.00 35.54 2.23
2792 3182 7.014134 CCTGTAATGCACCATTTAACATCCATA 59.986 37.037 0.00 0.00 35.54 2.74
2793 3183 6.183360 CCTGTAATGCACCATTTAACATCCAT 60.183 38.462 0.00 0.00 35.54 3.41
2794 3184 5.126869 CCTGTAATGCACCATTTAACATCCA 59.873 40.000 0.00 0.00 35.54 3.41
2795 3185 5.127031 ACCTGTAATGCACCATTTAACATCC 59.873 40.000 0.00 0.00 35.54 3.51
2796 3186 6.207691 ACCTGTAATGCACCATTTAACATC 57.792 37.500 0.00 0.00 35.54 3.06
2797 3187 6.096282 GGTACCTGTAATGCACCATTTAACAT 59.904 38.462 4.06 0.00 35.54 2.71
2798 3188 5.416326 GGTACCTGTAATGCACCATTTAACA 59.584 40.000 4.06 0.00 35.54 2.41
2799 3189 5.886992 GGTACCTGTAATGCACCATTTAAC 58.113 41.667 4.06 0.00 35.54 2.01
2818 3208 3.553302 CCAAAACAACGGGAATTGGGTAC 60.553 47.826 0.00 0.00 37.47 3.34
2819 3209 2.628657 CCAAAACAACGGGAATTGGGTA 59.371 45.455 0.00 0.00 37.47 3.69
2820 3210 1.414550 CCAAAACAACGGGAATTGGGT 59.585 47.619 0.00 0.00 37.47 4.51
2821 3211 1.414550 ACCAAAACAACGGGAATTGGG 59.585 47.619 15.94 4.76 43.77 4.12
2822 3212 2.869192 CAACCAAAACAACGGGAATTGG 59.131 45.455 12.54 12.54 44.75 3.16
2823 3213 3.526534 ACAACCAAAACAACGGGAATTG 58.473 40.909 0.00 0.00 35.59 2.32
2824 3214 3.897141 ACAACCAAAACAACGGGAATT 57.103 38.095 0.00 0.00 0.00 2.17
2825 3215 5.538849 ATTACAACCAAAACAACGGGAAT 57.461 34.783 0.00 0.00 0.00 3.01
2826 3216 6.040616 ACATATTACAACCAAAACAACGGGAA 59.959 34.615 0.00 0.00 0.00 3.97
2827 3217 5.535406 ACATATTACAACCAAAACAACGGGA 59.465 36.000 0.00 0.00 0.00 5.14
2828 3218 5.774630 ACATATTACAACCAAAACAACGGG 58.225 37.500 0.00 0.00 0.00 5.28
2829 3219 8.798748 TTAACATATTACAACCAAAACAACGG 57.201 30.769 0.00 0.00 0.00 4.44
2885 3275 5.013547 TCCAAAAGGAGTGACAAAGTTTCA 58.986 37.500 0.00 0.00 0.00 2.69
2894 3284 2.885266 GGAAAGGTCCAAAAGGAGTGAC 59.115 50.000 0.00 0.00 44.26 3.67
2945 3335 2.659428 ACTCCTGCAAAGCTTGAACTT 58.341 42.857 0.00 0.00 0.00 2.66
2953 3343 1.268079 GGTCAAGAACTCCTGCAAAGC 59.732 52.381 0.00 0.00 0.00 3.51
2955 3345 2.727123 TGGTCAAGAACTCCTGCAAA 57.273 45.000 0.00 0.00 0.00 3.68
2996 3386 4.576053 CGTGATATGGTGATTTGATGGTGT 59.424 41.667 0.00 0.00 0.00 4.16
3000 3390 6.479990 AGTGTACGTGATATGGTGATTTGATG 59.520 38.462 0.00 0.00 0.00 3.07
3033 3423 8.851541 AAAGTGTACGTGATATTCCCTAAAAA 57.148 30.769 0.00 0.00 0.00 1.94
3034 3424 8.851541 AAAAGTGTACGTGATATTCCCTAAAA 57.148 30.769 0.00 0.00 0.00 1.52
3037 3427 8.916062 TCATAAAAGTGTACGTGATATTCCCTA 58.084 33.333 0.00 0.00 0.00 3.53
3038 3428 7.788026 TCATAAAAGTGTACGTGATATTCCCT 58.212 34.615 0.00 0.00 0.00 4.20
3039 3429 8.495949 CATCATAAAAGTGTACGTGATATTCCC 58.504 37.037 0.00 0.00 0.00 3.97
3040 3430 9.042008 ACATCATAAAAGTGTACGTGATATTCC 57.958 33.333 0.00 0.00 0.00 3.01
3051 3441 6.183360 CGGAGGGAGTACATCATAAAAGTGTA 60.183 42.308 0.00 0.00 0.00 2.90
3056 3729 5.395990 GGAACGGAGGGAGTACATCATAAAA 60.396 44.000 0.00 0.00 0.00 1.52
3068 3741 5.480205 GCTTATATTTAGGAACGGAGGGAG 58.520 45.833 0.00 0.00 0.00 4.30
3071 3744 5.485209 AGGCTTATATTTAGGAACGGAGG 57.515 43.478 0.00 0.00 0.00 4.30
3072 3745 6.766467 ACAAAGGCTTATATTTAGGAACGGAG 59.234 38.462 0.00 0.00 0.00 4.63
3074 3747 6.937436 ACAAAGGCTTATATTTAGGAACGG 57.063 37.500 0.00 0.00 0.00 4.44
3075 3748 7.981142 TCAACAAAGGCTTATATTTAGGAACG 58.019 34.615 0.00 0.00 0.00 3.95
3076 3749 9.174166 TCTCAACAAAGGCTTATATTTAGGAAC 57.826 33.333 0.00 0.00 0.00 3.62
3077 3750 9.920946 ATCTCAACAAAGGCTTATATTTAGGAA 57.079 29.630 0.00 0.00 0.00 3.36
3078 3751 9.920946 AATCTCAACAAAGGCTTATATTTAGGA 57.079 29.630 0.00 0.00 0.00 2.94
3082 3755 9.860898 GTGAAATCTCAACAAAGGCTTATATTT 57.139 29.630 0.00 0.00 31.88 1.40
3083 3756 9.247861 AGTGAAATCTCAACAAAGGCTTATATT 57.752 29.630 0.00 0.00 31.88 1.28
3084 3757 8.814038 AGTGAAATCTCAACAAAGGCTTATAT 57.186 30.769 0.00 0.00 31.88 0.86
3085 3758 9.905713 ATAGTGAAATCTCAACAAAGGCTTATA 57.094 29.630 0.00 0.00 31.88 0.98
3086 3759 8.680903 CATAGTGAAATCTCAACAAAGGCTTAT 58.319 33.333 0.00 0.00 31.88 1.73
3087 3760 7.882791 TCATAGTGAAATCTCAACAAAGGCTTA 59.117 33.333 0.00 0.00 31.88 3.09
3088 3761 6.716628 TCATAGTGAAATCTCAACAAAGGCTT 59.283 34.615 0.00 0.00 31.88 4.35
3089 3762 6.240894 TCATAGTGAAATCTCAACAAAGGCT 58.759 36.000 0.00 0.00 31.88 4.58
3090 3763 6.500684 TCATAGTGAAATCTCAACAAAGGC 57.499 37.500 0.00 0.00 31.88 4.35
3091 3764 7.040478 TGGTTCATAGTGAAATCTCAACAAAGG 60.040 37.037 0.00 0.00 38.22 3.11
3092 3765 7.805071 GTGGTTCATAGTGAAATCTCAACAAAG 59.195 37.037 0.00 0.00 38.22 2.77
3093 3766 7.284261 TGTGGTTCATAGTGAAATCTCAACAAA 59.716 33.333 0.00 0.00 38.22 2.83
3094 3767 6.770303 TGTGGTTCATAGTGAAATCTCAACAA 59.230 34.615 0.00 0.00 38.22 2.83
3095 3768 6.295249 TGTGGTTCATAGTGAAATCTCAACA 58.705 36.000 0.00 0.00 38.22 3.33
3096 3769 6.801539 TGTGGTTCATAGTGAAATCTCAAC 57.198 37.500 0.00 0.00 38.22 3.18
3097 3770 9.685276 AATATGTGGTTCATAGTGAAATCTCAA 57.315 29.630 0.00 0.00 41.55 3.02
3111 3784 9.452287 CATCCATATACATCAATATGTGGTTCA 57.548 33.333 8.01 0.00 45.99 3.18
3112 3785 8.400947 GCATCCATATACATCAATATGTGGTTC 58.599 37.037 8.01 0.00 45.99 3.62
3113 3786 7.889600 TGCATCCATATACATCAATATGTGGTT 59.110 33.333 8.01 0.00 45.99 3.67
3114 3787 7.404481 TGCATCCATATACATCAATATGTGGT 58.596 34.615 8.01 0.00 45.99 4.16
3115 3788 7.868906 TGCATCCATATACATCAATATGTGG 57.131 36.000 1.34 2.96 45.99 4.17
3120 3793 9.962809 TCTCAAATGCATCCATATACATCAATA 57.037 29.630 0.00 0.00 0.00 1.90
3121 3794 8.873186 TCTCAAATGCATCCATATACATCAAT 57.127 30.769 0.00 0.00 0.00 2.57
3122 3795 7.940688 ACTCTCAAATGCATCCATATACATCAA 59.059 33.333 0.00 0.00 0.00 2.57
3123 3796 7.389607 CACTCTCAAATGCATCCATATACATCA 59.610 37.037 0.00 0.00 0.00 3.07
3124 3797 7.389884 ACACTCTCAAATGCATCCATATACATC 59.610 37.037 0.00 0.00 0.00 3.06
3125 3798 7.229308 ACACTCTCAAATGCATCCATATACAT 58.771 34.615 0.00 0.00 0.00 2.29
3126 3799 6.594744 ACACTCTCAAATGCATCCATATACA 58.405 36.000 0.00 0.00 0.00 2.29
3127 3800 8.090831 TCTACACTCTCAAATGCATCCATATAC 58.909 37.037 0.00 0.00 0.00 1.47
3128 3801 8.193953 TCTACACTCTCAAATGCATCCATATA 57.806 34.615 0.00 0.00 0.00 0.86
3129 3802 7.071069 TCTACACTCTCAAATGCATCCATAT 57.929 36.000 0.00 0.00 0.00 1.78
3130 3803 6.484364 TCTACACTCTCAAATGCATCCATA 57.516 37.500 0.00 0.00 0.00 2.74
3131 3804 5.363562 TCTACACTCTCAAATGCATCCAT 57.636 39.130 0.00 0.00 0.00 3.41
3132 3805 4.824479 TCTACACTCTCAAATGCATCCA 57.176 40.909 0.00 0.00 0.00 3.41
3133 3806 5.819379 TGAATCTACACTCTCAAATGCATCC 59.181 40.000 0.00 0.00 0.00 3.51
3134 3807 6.538021 AGTGAATCTACACTCTCAAATGCATC 59.462 38.462 0.00 0.00 46.36 3.91
3135 3808 6.413052 AGTGAATCTACACTCTCAAATGCAT 58.587 36.000 0.00 0.00 46.36 3.96
3136 3809 5.798132 AGTGAATCTACACTCTCAAATGCA 58.202 37.500 0.00 0.00 46.36 3.96
3147 3820 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
3148 3821 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
3149 3822 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
3150 3823 9.764363 ATATACGAAGCAAAATGAGTGAATCTA 57.236 29.630 0.00 0.00 0.00 1.98
3151 3824 6.992063 ATACGAAGCAAAATGAGTGAATCT 57.008 33.333 0.00 0.00 0.00 2.40
3153 3826 9.547753 ACTATATACGAAGCAAAATGAGTGAAT 57.452 29.630 0.00 0.00 0.00 2.57
3154 3827 8.942338 ACTATATACGAAGCAAAATGAGTGAA 57.058 30.769 0.00 0.00 0.00 3.18
3155 3828 7.652105 GGACTATATACGAAGCAAAATGAGTGA 59.348 37.037 0.00 0.00 0.00 3.41
3156 3829 7.438160 TGGACTATATACGAAGCAAAATGAGTG 59.562 37.037 0.00 0.00 0.00 3.51
3157 3830 7.497595 TGGACTATATACGAAGCAAAATGAGT 58.502 34.615 0.00 0.00 0.00 3.41
3158 3831 7.946655 TGGACTATATACGAAGCAAAATGAG 57.053 36.000 0.00 0.00 0.00 2.90
3159 3832 9.639601 CTATGGACTATATACGAAGCAAAATGA 57.360 33.333 0.00 0.00 0.00 2.57
3160 3833 9.424319 ACTATGGACTATATACGAAGCAAAATG 57.576 33.333 0.00 0.00 0.00 2.32
3161 3834 9.424319 CACTATGGACTATATACGAAGCAAAAT 57.576 33.333 0.00 0.00 0.00 1.82
3162 3835 8.635328 TCACTATGGACTATATACGAAGCAAAA 58.365 33.333 0.00 0.00 0.00 2.44
3163 3836 8.173542 TCACTATGGACTATATACGAAGCAAA 57.826 34.615 0.00 0.00 0.00 3.68
3164 3837 7.754851 TCACTATGGACTATATACGAAGCAA 57.245 36.000 0.00 0.00 0.00 3.91
3165 3838 7.754851 TTCACTATGGACTATATACGAAGCA 57.245 36.000 0.00 0.00 0.00 3.91
3166 3839 9.291664 GATTTCACTATGGACTATATACGAAGC 57.708 37.037 0.00 0.00 0.00 3.86
3169 3842 9.961264 AGAGATTTCACTATGGACTATATACGA 57.039 33.333 0.00 0.00 0.00 3.43
3177 3850 9.660180 GTCTTTTTAGAGATTTCACTATGGACT 57.340 33.333 0.00 0.00 0.00 3.85
3178 3851 9.660180 AGTCTTTTTAGAGATTTCACTATGGAC 57.340 33.333 0.00 0.00 0.00 4.02
3196 3869 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3197 3870 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3198 3871 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3199 3872 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3200 3873 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3201 3874 6.661304 TCCCTCCGTTCCTAAATATAAGTC 57.339 41.667 0.00 0.00 0.00 3.01
3202 3875 7.628501 AATCCCTCCGTTCCTAAATATAAGT 57.371 36.000 0.00 0.00 0.00 2.24
3205 3878 9.328975 TGAATAATCCCTCCGTTCCTAAATATA 57.671 33.333 0.00 0.00 0.00 0.86
3206 3879 8.214721 TGAATAATCCCTCCGTTCCTAAATAT 57.785 34.615 0.00 0.00 0.00 1.28
3207 3880 7.621006 TGAATAATCCCTCCGTTCCTAAATA 57.379 36.000 0.00 0.00 0.00 1.40
3208 3881 6.509523 TGAATAATCCCTCCGTTCCTAAAT 57.490 37.500 0.00 0.00 0.00 1.40
3209 3882 5.961398 TGAATAATCCCTCCGTTCCTAAA 57.039 39.130 0.00 0.00 0.00 1.85
3210 3883 6.509523 AATGAATAATCCCTCCGTTCCTAA 57.490 37.500 0.00 0.00 0.00 2.69
3211 3884 6.509523 AAATGAATAATCCCTCCGTTCCTA 57.490 37.500 0.00 0.00 0.00 2.94
3212 3885 5.388599 AAATGAATAATCCCTCCGTTCCT 57.611 39.130 0.00 0.00 0.00 3.36
3213 3886 7.761038 ATTAAATGAATAATCCCTCCGTTCC 57.239 36.000 0.00 0.00 0.00 3.62
3242 3915 7.617225 TCGGTCCAACTAATTTATTTCTGAGA 58.383 34.615 0.00 0.00 0.00 3.27
3266 3939 4.742659 TCCTTTTTAAAATTGTGTGCGCTC 59.257 37.500 9.73 5.51 0.00 5.03
3271 3944 9.810545 TTACTTCCTCCTTTTTAAAATTGTGTG 57.189 29.630 0.55 0.00 0.00 3.82
3287 3960 8.594550 TGGAGTATATAGCAATTTACTTCCTCC 58.405 37.037 0.00 0.00 32.14 4.30
3314 3987 3.503363 GTGACTGCATGGATTCAAGAACA 59.497 43.478 8.83 0.00 0.00 3.18
3319 3992 2.583024 TGGTGACTGCATGGATTCAA 57.417 45.000 8.83 0.00 0.00 2.69
3325 3998 2.696989 TACAGATGGTGACTGCATGG 57.303 50.000 0.00 0.00 38.74 3.66
3347 4020 4.100373 AGAATGTACTGAGGGCTCTTTCT 58.900 43.478 0.00 0.00 0.00 2.52
3349 4022 3.840666 TGAGAATGTACTGAGGGCTCTTT 59.159 43.478 0.00 0.00 0.00 2.52
3354 4027 4.142609 TCAATGAGAATGTACTGAGGGC 57.857 45.455 0.00 0.00 0.00 5.19
3372 4045 1.137086 GGCTCGAGGCTAAGACATCAA 59.863 52.381 30.02 0.00 41.46 2.57
3379 4052 2.833582 TCGGGGCTCGAGGCTAAG 60.834 66.667 34.35 25.06 43.74 2.18
3417 4090 9.643693 AAAATGTCTACAGAAAGCAAAATATGG 57.356 29.630 0.00 0.00 0.00 2.74
3427 4100 9.829507 AGATATGAGGAAAATGTCTACAGAAAG 57.170 33.333 0.00 0.00 0.00 2.62
3543 4223 3.065175 TGGTCTAAAGGGGGAAAAAGGA 58.935 45.455 0.00 0.00 0.00 3.36
3551 4232 0.253327 GCTCACTGGTCTAAAGGGGG 59.747 60.000 0.00 0.00 0.00 5.40
3567 4248 3.004106 AGTTGCACTTCTCAATGTTGCTC 59.996 43.478 0.00 0.00 0.00 4.26
3584 4265 5.163923 GCTGAGGATTTGCATTTTAAGTTGC 60.164 40.000 5.10 5.10 39.33 4.17
3596 4277 4.989279 TCTTAAATGGCTGAGGATTTGC 57.011 40.909 0.00 0.00 0.00 3.68
3607 4288 9.455847 GTGATGAACAGATAATTCTTAAATGGC 57.544 33.333 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.