Multiple sequence alignment - TraesCS5D01G377700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G377700 chr5D 100.000 2665 0 0 1 2665 449666215 449668879 0.000000e+00 4922
1 TraesCS5D01G377700 chr5D 90.598 702 44 11 988 1675 449649731 449650424 0.000000e+00 911
2 TraesCS5D01G377700 chr5D 91.434 502 39 1 958 1455 449692407 449692908 0.000000e+00 686
3 TraesCS5D01G377700 chr5D 80.894 492 40 20 1463 1935 449692972 449693428 3.290000e-89 339
4 TraesCS5D01G377700 chr5D 89.316 234 25 0 2134 2367 556772710 556772943 7.210000e-76 294
5 TraesCS5D01G377700 chr5D 75.137 547 102 24 245 782 129479771 129480292 2.670000e-55 226
6 TraesCS5D01G377700 chr5B 85.927 1208 111 33 958 2133 549587456 549588636 0.000000e+00 1234
7 TraesCS5D01G377700 chr5B 95.502 289 11 2 2379 2665 549588763 549589051 6.720000e-126 460
8 TraesCS5D01G377700 chr5B 89.362 235 25 0 2134 2368 19957437 19957203 2.010000e-76 296
9 TraesCS5D01G377700 chr5A 88.434 977 79 13 958 1933 568890431 568891374 0.000000e+00 1147
10 TraesCS5D01G377700 chr5A 90.093 535 40 4 958 1479 568681899 568682433 0.000000e+00 682
11 TraesCS5D01G377700 chr5A 85.968 506 44 16 957 1455 568799897 568800382 1.410000e-142 516
12 TraesCS5D01G377700 chr5A 77.860 542 101 14 245 774 566046786 566047320 4.280000e-83 318
13 TraesCS5D01G377700 chr5A 90.094 212 18 1 2451 2659 568891856 568892067 3.380000e-69 272
14 TraesCS5D01G377700 chr5A 95.122 164 8 0 1512 1675 568808628 568808791 2.630000e-65 259
15 TraesCS5D01G377700 chr5A 86.916 214 20 2 1706 1919 568808791 568808996 1.600000e-57 233
16 TraesCS5D01G377700 chr5A 78.346 254 21 7 2415 2665 568812636 568812858 1.660000e-27 134
17 TraesCS5D01G377700 chr5A 88.034 117 8 4 957 1067 568890228 568890344 1.660000e-27 134
18 TraesCS5D01G377700 chr7D 79.428 559 91 15 242 779 484347432 484347987 9.010000e-100 374
19 TraesCS5D01G377700 chr7D 91.213 239 17 4 2134 2371 432329213 432329448 3.310000e-84 322
20 TraesCS5D01G377700 chr7D 90.558 233 21 1 2134 2366 254340106 254340337 9.270000e-80 307
21 TraesCS5D01G377700 chr7D 76.616 526 87 22 262 774 561608540 561609042 9.470000e-65 257
22 TraesCS5D01G377700 chr7D 97.917 96 1 1 150 245 203516567 203516473 5.900000e-37 165
23 TraesCS5D01G377700 chr2A 79.135 532 84 17 264 775 762989156 762988632 2.540000e-90 342
24 TraesCS5D01G377700 chr4D 78.707 526 87 19 245 755 113416066 113415551 7.110000e-86 327
25 TraesCS5D01G377700 chr4D 77.842 519 82 25 245 747 421113896 421114397 9.330000e-75 291
26 TraesCS5D01G377700 chr4D 76.503 549 94 25 245 773 368862959 368863492 1.570000e-67 267
27 TraesCS5D01G377700 chr4D 97.917 96 1 1 150 245 123300979 123300885 5.900000e-37 165
28 TraesCS5D01G377700 chr4D 97.917 96 1 1 150 245 123717599 123717505 5.900000e-37 165
29 TraesCS5D01G377700 chr7B 91.379 232 20 0 2134 2365 414077412 414077181 4.280000e-83 318
30 TraesCS5D01G377700 chr7B 78.311 521 93 13 242 747 648112358 648111843 4.280000e-83 318
31 TraesCS5D01G377700 chr3D 78.026 537 91 18 242 764 553332632 553333155 1.990000e-81 313
32 TraesCS5D01G377700 chr3D 77.692 520 98 12 242 747 569544263 569544778 4.310000e-78 302
33 TraesCS5D01G377700 chr3D 89.831 236 17 3 2131 2365 392686204 392686433 2.010000e-76 296
34 TraesCS5D01G377700 chr3D 77.583 513 98 12 248 747 572463164 572462656 7.210000e-76 294
35 TraesCS5D01G377700 chr2B 90.558 233 20 2 2134 2365 374676914 374677145 9.270000e-80 307
36 TraesCS5D01G377700 chr1D 89.451 237 25 0 2134 2370 357277678 357277442 1.550000e-77 300
37 TraesCS5D01G377700 chr1D 97.917 96 1 1 150 245 141312047 141312141 5.900000e-37 165
38 TraesCS5D01G377700 chr1D 84.459 148 20 3 245 389 145544534 145544387 2.770000e-30 143
39 TraesCS5D01G377700 chr4B 77.413 549 90 25 245 773 651980129 651979595 2.010000e-76 296
40 TraesCS5D01G377700 chr4B 89.655 232 22 1 2134 2365 592701687 592701458 7.210000e-76 294
41 TraesCS5D01G377700 chr1B 78.395 486 83 14 242 720 14651764 14652234 2.010000e-76 296
42 TraesCS5D01G377700 chr1B 87.234 141 15 3 245 384 171045890 171045752 9.880000e-35 158
43 TraesCS5D01G377700 chr3A 76.923 494 86 19 245 719 648851583 648851099 3.400000e-64 255
44 TraesCS5D01G377700 chr3A 97.917 96 1 1 150 245 633112342 633112248 5.900000e-37 165
45 TraesCS5D01G377700 chr7A 76.044 551 96 25 245 774 719274357 719273822 1.220000e-63 254
46 TraesCS5D01G377700 chr7A 97.917 96 1 1 150 245 575289575 575289481 5.900000e-37 165
47 TraesCS5D01G377700 chrUn 97.917 96 1 1 150 245 36546952 36546858 5.900000e-37 165
48 TraesCS5D01G377700 chrUn 97.917 96 1 1 150 245 275329173 275329267 5.900000e-37 165
49 TraesCS5D01G377700 chrUn 97.917 96 1 1 150 245 454685230 454685324 5.900000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G377700 chr5D 449666215 449668879 2664 False 4922.000000 4922 100.000000 1 2665 1 chr5D.!!$F3 2664
1 TraesCS5D01G377700 chr5D 449649731 449650424 693 False 911.000000 911 90.598000 988 1675 1 chr5D.!!$F2 687
2 TraesCS5D01G377700 chr5D 449692407 449693428 1021 False 512.500000 686 86.164000 958 1935 2 chr5D.!!$F5 977
3 TraesCS5D01G377700 chr5D 129479771 129480292 521 False 226.000000 226 75.137000 245 782 1 chr5D.!!$F1 537
4 TraesCS5D01G377700 chr5B 549587456 549589051 1595 False 847.000000 1234 90.714500 958 2665 2 chr5B.!!$F1 1707
5 TraesCS5D01G377700 chr5A 568681899 568682433 534 False 682.000000 682 90.093000 958 1479 1 chr5A.!!$F2 521
6 TraesCS5D01G377700 chr5A 568890228 568892067 1839 False 517.666667 1147 88.854000 957 2659 3 chr5A.!!$F5 1702
7 TraesCS5D01G377700 chr5A 566046786 566047320 534 False 318.000000 318 77.860000 245 774 1 chr5A.!!$F1 529
8 TraesCS5D01G377700 chr5A 568808628 568812858 4230 False 208.666667 259 86.794667 1512 2665 3 chr5A.!!$F4 1153
9 TraesCS5D01G377700 chr7D 484347432 484347987 555 False 374.000000 374 79.428000 242 779 1 chr7D.!!$F3 537
10 TraesCS5D01G377700 chr7D 561608540 561609042 502 False 257.000000 257 76.616000 262 774 1 chr7D.!!$F4 512
11 TraesCS5D01G377700 chr2A 762988632 762989156 524 True 342.000000 342 79.135000 264 775 1 chr2A.!!$R1 511
12 TraesCS5D01G377700 chr4D 113415551 113416066 515 True 327.000000 327 78.707000 245 755 1 chr4D.!!$R1 510
13 TraesCS5D01G377700 chr4D 421113896 421114397 501 False 291.000000 291 77.842000 245 747 1 chr4D.!!$F2 502
14 TraesCS5D01G377700 chr4D 368862959 368863492 533 False 267.000000 267 76.503000 245 773 1 chr4D.!!$F1 528
15 TraesCS5D01G377700 chr7B 648111843 648112358 515 True 318.000000 318 78.311000 242 747 1 chr7B.!!$R2 505
16 TraesCS5D01G377700 chr3D 553332632 553333155 523 False 313.000000 313 78.026000 242 764 1 chr3D.!!$F2 522
17 TraesCS5D01G377700 chr3D 569544263 569544778 515 False 302.000000 302 77.692000 242 747 1 chr3D.!!$F3 505
18 TraesCS5D01G377700 chr3D 572462656 572463164 508 True 294.000000 294 77.583000 248 747 1 chr3D.!!$R1 499
19 TraesCS5D01G377700 chr4B 651979595 651980129 534 True 296.000000 296 77.413000 245 773 1 chr4B.!!$R2 528
20 TraesCS5D01G377700 chr7A 719273822 719274357 535 True 254.000000 254 76.044000 245 774 1 chr7A.!!$R2 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
877 943 0.02877 ACACCACGAAAATGTGCACG 59.971 50.0 13.13 0.87 38.55 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1865 0.389817 TATGCGTCCATGATAGCGGC 60.39 55.0 0.0 0.0 32.85 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.046968 GTCTTCCTGAGGGTTTGTCTC 57.953 52.381 0.00 0.00 0.00 3.36
22 23 0.034896 TTCCTGAGGGTTTGTCTCGC 59.965 55.000 0.00 0.00 34.19 5.03
23 24 1.376037 CCTGAGGGTTTGTCTCGCC 60.376 63.158 0.00 0.00 34.19 5.54
24 25 1.371183 CTGAGGGTTTGTCTCGCCA 59.629 57.895 0.00 0.00 34.19 5.69
25 26 0.671781 CTGAGGGTTTGTCTCGCCAG 60.672 60.000 0.00 0.00 34.19 4.85
26 27 1.118965 TGAGGGTTTGTCTCGCCAGA 61.119 55.000 0.00 0.00 34.19 3.86
27 28 0.250513 GAGGGTTTGTCTCGCCAGAT 59.749 55.000 0.00 0.00 0.00 2.90
28 29 0.693049 AGGGTTTGTCTCGCCAGATT 59.307 50.000 0.00 0.00 0.00 2.40
29 30 1.073923 AGGGTTTGTCTCGCCAGATTT 59.926 47.619 0.00 0.00 0.00 2.17
32 33 1.880027 GTTTGTCTCGCCAGATTTGGT 59.120 47.619 3.90 0.00 46.80 3.67
40 41 1.620822 GCCAGATTTGGTGGTTGACT 58.379 50.000 3.90 0.00 46.80 3.41
41 42 1.963515 GCCAGATTTGGTGGTTGACTT 59.036 47.619 3.90 0.00 46.80 3.01
42 43 2.029918 GCCAGATTTGGTGGTTGACTTC 60.030 50.000 3.90 0.00 46.80 3.01
44 45 2.226437 CAGATTTGGTGGTTGACTTCGG 59.774 50.000 0.00 0.00 0.00 4.30
45 46 0.958822 ATTTGGTGGTTGACTTCGGC 59.041 50.000 0.00 0.00 0.00 5.54
46 47 1.104577 TTTGGTGGTTGACTTCGGCC 61.105 55.000 0.00 0.00 0.00 6.13
51 52 3.479269 GTTGACTTCGGCCGCGAG 61.479 66.667 23.51 22.51 0.00 5.03
52 53 3.676605 TTGACTTCGGCCGCGAGA 61.677 61.111 27.84 7.75 0.00 4.04
53 54 3.001902 TTGACTTCGGCCGCGAGAT 62.002 57.895 27.84 15.68 0.00 2.75
54 55 2.956964 GACTTCGGCCGCGAGATG 60.957 66.667 27.84 13.95 0.00 2.90
59 60 4.520846 CGGCCGCGAGATGCAAAC 62.521 66.667 14.67 0.00 46.97 2.93
60 61 3.127533 GGCCGCGAGATGCAAACT 61.128 61.111 8.23 0.00 46.97 2.66
61 62 1.813753 GGCCGCGAGATGCAAACTA 60.814 57.895 8.23 0.00 46.97 2.24
62 63 1.160329 GGCCGCGAGATGCAAACTAT 61.160 55.000 8.23 0.00 46.97 2.12
63 64 1.497991 GCCGCGAGATGCAAACTATA 58.502 50.000 8.23 0.00 46.97 1.31
64 65 1.457303 GCCGCGAGATGCAAACTATAG 59.543 52.381 8.23 0.00 46.97 1.31
66 67 3.579709 CCGCGAGATGCAAACTATAGAT 58.420 45.455 8.23 0.00 46.97 1.98
67 68 4.733850 CCGCGAGATGCAAACTATAGATA 58.266 43.478 8.23 0.00 46.97 1.98
68 69 4.795795 CCGCGAGATGCAAACTATAGATAG 59.204 45.833 8.23 0.00 46.97 2.08
69 70 4.264145 CGCGAGATGCAAACTATAGATAGC 59.736 45.833 6.78 7.36 46.97 2.97
72 73 5.509972 CGAGATGCAAACTATAGATAGCGAC 59.490 44.000 6.78 5.31 33.68 5.19
73 74 6.582677 AGATGCAAACTATAGATAGCGACT 57.417 37.500 6.78 7.20 33.68 4.18
74 75 6.987386 AGATGCAAACTATAGATAGCGACTT 58.013 36.000 6.78 0.00 33.68 3.01
75 76 6.865726 AGATGCAAACTATAGATAGCGACTTG 59.134 38.462 6.78 0.00 33.68 3.16
76 77 6.144078 TGCAAACTATAGATAGCGACTTGA 57.856 37.500 6.78 0.00 33.68 3.02
77 78 5.977725 TGCAAACTATAGATAGCGACTTGAC 59.022 40.000 6.78 0.00 33.68 3.18
78 79 5.977725 GCAAACTATAGATAGCGACTTGACA 59.022 40.000 6.78 0.00 33.68 3.58
79 80 6.074782 GCAAACTATAGATAGCGACTTGACAC 60.075 42.308 6.78 0.00 33.68 3.67
80 81 6.945938 AACTATAGATAGCGACTTGACACT 57.054 37.500 6.78 0.00 33.68 3.55
82 83 8.447924 AACTATAGATAGCGACTTGACACTTA 57.552 34.615 6.78 0.00 33.68 2.24
84 85 4.640789 AGATAGCGACTTGACACTTAGG 57.359 45.455 0.00 0.00 0.00 2.69
85 86 3.381908 AGATAGCGACTTGACACTTAGGG 59.618 47.826 0.00 0.00 0.00 3.53
86 87 1.629043 AGCGACTTGACACTTAGGGA 58.371 50.000 0.00 0.00 0.00 4.20
87 88 2.180276 AGCGACTTGACACTTAGGGAT 58.820 47.619 0.00 0.00 0.00 3.85
88 89 2.093973 AGCGACTTGACACTTAGGGATG 60.094 50.000 0.00 0.00 0.00 3.51
90 91 2.233922 CGACTTGACACTTAGGGATGGT 59.766 50.000 0.00 0.00 0.00 3.55
91 92 3.306780 CGACTTGACACTTAGGGATGGTT 60.307 47.826 0.00 0.00 0.00 3.67
92 93 4.003648 GACTTGACACTTAGGGATGGTTG 58.996 47.826 0.00 0.00 0.00 3.77
95 96 2.084546 GACACTTAGGGATGGTTGTGC 58.915 52.381 0.00 0.00 0.00 4.57
98 99 1.098050 CTTAGGGATGGTTGTGCAGC 58.902 55.000 0.00 0.00 0.00 5.25
100 101 1.836999 TAGGGATGGTTGTGCAGCGT 61.837 55.000 0.00 0.00 0.00 5.07
101 102 2.562912 GGATGGTTGTGCAGCGTG 59.437 61.111 0.00 0.00 0.00 5.34
103 104 2.203337 ATGGTTGTGCAGCGTGGT 60.203 55.556 0.00 0.00 0.00 4.16
104 105 2.462255 GATGGTTGTGCAGCGTGGTG 62.462 60.000 0.00 0.00 0.00 4.17
106 107 2.260869 GGTTGTGCAGCGTGGTGAT 61.261 57.895 2.76 0.00 0.00 3.06
107 108 1.654220 GTTGTGCAGCGTGGTGATT 59.346 52.632 2.76 0.00 0.00 2.57
108 109 0.661187 GTTGTGCAGCGTGGTGATTG 60.661 55.000 2.76 0.00 0.00 2.67
109 110 1.794151 TTGTGCAGCGTGGTGATTGG 61.794 55.000 2.76 0.00 0.00 3.16
110 111 1.965930 GTGCAGCGTGGTGATTGGA 60.966 57.895 2.76 0.00 0.00 3.53
111 112 1.965930 TGCAGCGTGGTGATTGGAC 60.966 57.895 2.76 0.00 0.00 4.02
112 113 1.965930 GCAGCGTGGTGATTGGACA 60.966 57.895 2.76 0.00 0.00 4.02
115 116 0.324614 AGCGTGGTGATTGGACATCA 59.675 50.000 0.00 0.00 0.00 3.07
116 117 0.447801 GCGTGGTGATTGGACATCAC 59.552 55.000 6.44 6.44 45.15 3.06
124 125 4.194640 GTGATTGGACATCACATGTAGCT 58.805 43.478 9.60 0.00 45.03 3.32
127 128 1.556451 TGGACATCACATGTAGCTGCT 59.444 47.619 7.57 7.57 45.03 4.24
129 130 2.353889 GGACATCACATGTAGCTGCTTG 59.646 50.000 7.79 14.79 45.03 4.01
132 133 4.774124 ACATCACATGTAGCTGCTTGTAT 58.226 39.130 20.20 12.52 42.78 2.29
133 134 4.813161 ACATCACATGTAGCTGCTTGTATC 59.187 41.667 20.20 0.00 42.78 2.24
135 136 3.119137 TCACATGTAGCTGCTTGTATCGT 60.119 43.478 20.20 0.00 0.00 3.73
136 137 3.000623 CACATGTAGCTGCTTGTATCGTG 59.999 47.826 20.20 6.87 0.00 4.35
138 139 3.586100 TGTAGCTGCTTGTATCGTGAA 57.414 42.857 7.79 0.00 0.00 3.18
139 140 3.920446 TGTAGCTGCTTGTATCGTGAAA 58.080 40.909 7.79 0.00 0.00 2.69
140 141 4.311606 TGTAGCTGCTTGTATCGTGAAAA 58.688 39.130 7.79 0.00 0.00 2.29
141 142 4.752604 TGTAGCTGCTTGTATCGTGAAAAA 59.247 37.500 7.79 0.00 0.00 1.94
142 143 4.147219 AGCTGCTTGTATCGTGAAAAAC 57.853 40.909 0.00 0.00 0.00 2.43
143 144 3.815401 AGCTGCTTGTATCGTGAAAAACT 59.185 39.130 0.00 0.00 0.00 2.66
144 145 3.908382 GCTGCTTGTATCGTGAAAAACTG 59.092 43.478 0.00 0.00 0.00 3.16
145 146 4.466828 CTGCTTGTATCGTGAAAAACTGG 58.533 43.478 0.00 0.00 0.00 4.00
146 147 3.880490 TGCTTGTATCGTGAAAAACTGGT 59.120 39.130 0.00 0.00 0.00 4.00
147 148 4.219033 GCTTGTATCGTGAAAAACTGGTG 58.781 43.478 0.00 0.00 0.00 4.17
148 149 4.783242 CTTGTATCGTGAAAAACTGGTGG 58.217 43.478 0.00 0.00 0.00 4.61
149 150 3.142951 TGTATCGTGAAAAACTGGTGGG 58.857 45.455 0.00 0.00 0.00 4.61
150 151 1.616159 ATCGTGAAAAACTGGTGGGG 58.384 50.000 0.00 0.00 0.00 4.96
151 152 0.256464 TCGTGAAAAACTGGTGGGGT 59.744 50.000 0.00 0.00 0.00 4.95
152 153 0.666374 CGTGAAAAACTGGTGGGGTC 59.334 55.000 0.00 0.00 0.00 4.46
154 155 1.954382 GTGAAAAACTGGTGGGGTCTC 59.046 52.381 0.00 0.00 0.00 3.36
157 158 0.396811 AAAACTGGTGGGGTCTCTCG 59.603 55.000 0.00 0.00 0.00 4.04
158 159 0.763223 AAACTGGTGGGGTCTCTCGT 60.763 55.000 0.00 0.00 0.00 4.18
159 160 1.472662 AACTGGTGGGGTCTCTCGTG 61.473 60.000 0.00 0.00 0.00 4.35
160 161 2.603473 TGGTGGGGTCTCTCGTGG 60.603 66.667 0.00 0.00 0.00 4.94
161 162 4.083862 GGTGGGGTCTCTCGTGGC 62.084 72.222 0.00 0.00 0.00 5.01
162 163 4.083862 GTGGGGTCTCTCGTGGCC 62.084 72.222 0.00 0.00 0.00 5.36
163 164 4.631740 TGGGGTCTCTCGTGGCCA 62.632 66.667 0.00 0.00 0.00 5.36
164 165 3.319198 GGGGTCTCTCGTGGCCAA 61.319 66.667 7.24 0.00 0.00 4.52
165 166 2.747686 GGGTCTCTCGTGGCCAAA 59.252 61.111 7.24 0.00 0.00 3.28
166 167 1.299976 GGGTCTCTCGTGGCCAAAT 59.700 57.895 7.24 0.00 0.00 2.32
167 168 0.322546 GGGTCTCTCGTGGCCAAATT 60.323 55.000 7.24 0.00 0.00 1.82
168 169 1.087501 GGTCTCTCGTGGCCAAATTC 58.912 55.000 7.24 0.00 0.00 2.17
169 170 1.339151 GGTCTCTCGTGGCCAAATTCT 60.339 52.381 7.24 0.00 0.00 2.40
171 172 3.596214 GTCTCTCGTGGCCAAATTCTTA 58.404 45.455 7.24 0.00 0.00 2.10
172 173 4.192317 GTCTCTCGTGGCCAAATTCTTAT 58.808 43.478 7.24 0.00 0.00 1.73
173 174 4.636206 GTCTCTCGTGGCCAAATTCTTATT 59.364 41.667 7.24 0.00 0.00 1.40
174 175 5.815740 GTCTCTCGTGGCCAAATTCTTATTA 59.184 40.000 7.24 0.00 0.00 0.98
177 178 7.065803 TCTCTCGTGGCCAAATTCTTATTAAAG 59.934 37.037 7.24 0.00 0.00 1.85
178 179 5.646606 TCGTGGCCAAATTCTTATTAAAGC 58.353 37.500 7.24 0.00 32.36 3.51
179 180 4.803613 CGTGGCCAAATTCTTATTAAAGCC 59.196 41.667 7.24 0.00 35.47 4.35
180 181 5.394115 CGTGGCCAAATTCTTATTAAAGCCT 60.394 40.000 7.24 0.00 35.71 4.58
181 182 6.406370 GTGGCCAAATTCTTATTAAAGCCTT 58.594 36.000 7.24 0.00 35.71 4.35
182 183 6.535150 GTGGCCAAATTCTTATTAAAGCCTTC 59.465 38.462 7.24 0.00 35.71 3.46
183 184 6.440328 TGGCCAAATTCTTATTAAAGCCTTCT 59.560 34.615 0.61 0.00 35.71 2.85
184 185 6.980978 GGCCAAATTCTTATTAAAGCCTTCTC 59.019 38.462 0.00 0.00 33.65 2.87
185 186 7.147828 GGCCAAATTCTTATTAAAGCCTTCTCT 60.148 37.037 0.00 0.00 33.65 3.10
192 193 8.964476 TCTTATTAAAGCCTTCTCTACCATTG 57.036 34.615 0.00 0.00 32.36 2.82
195 196 9.920946 TTATTAAAGCCTTCTCTACCATTGAAT 57.079 29.630 0.00 0.00 0.00 2.57
196 197 8.829373 ATTAAAGCCTTCTCTACCATTGAATT 57.171 30.769 0.00 0.00 0.00 2.17
197 198 6.765915 AAAGCCTTCTCTACCATTGAATTC 57.234 37.500 0.00 0.00 0.00 2.17
198 199 4.446371 AGCCTTCTCTACCATTGAATTCG 58.554 43.478 0.04 0.00 0.00 3.34
199 200 3.561725 GCCTTCTCTACCATTGAATTCGG 59.438 47.826 0.04 0.00 0.00 4.30
200 201 3.561725 CCTTCTCTACCATTGAATTCGGC 59.438 47.826 0.04 0.00 0.00 5.54
204 205 3.541632 TCTACCATTGAATTCGGCCTTC 58.458 45.455 0.00 0.00 0.00 3.46
205 206 1.094785 ACCATTGAATTCGGCCTTCG 58.905 50.000 0.00 0.00 40.90 3.79
206 207 0.381801 CCATTGAATTCGGCCTTCGG 59.618 55.000 0.00 0.00 39.77 4.30
207 208 0.381801 CATTGAATTCGGCCTTCGGG 59.618 55.000 0.00 0.00 39.77 5.14
208 209 0.751643 ATTGAATTCGGCCTTCGGGG 60.752 55.000 0.00 0.00 39.77 5.73
209 210 2.132089 TTGAATTCGGCCTTCGGGGT 62.132 55.000 0.00 0.00 39.77 4.95
210 211 1.818363 GAATTCGGCCTTCGGGGTC 60.818 63.158 0.00 0.00 39.77 4.46
211 212 2.530958 GAATTCGGCCTTCGGGGTCA 62.531 60.000 0.00 0.00 40.36 4.02
212 213 2.132089 AATTCGGCCTTCGGGGTCAA 62.132 55.000 0.00 0.00 40.36 3.18
213 214 2.814913 ATTCGGCCTTCGGGGTCAAC 62.815 60.000 0.00 0.00 40.36 3.18
224 225 3.056328 GGTCAACCCAGCGGCTTC 61.056 66.667 0.00 0.00 0.00 3.86
225 226 2.032681 GTCAACCCAGCGGCTTCT 59.967 61.111 0.00 0.00 0.00 2.85
226 227 1.295423 GTCAACCCAGCGGCTTCTA 59.705 57.895 0.00 0.00 0.00 2.10
227 228 0.107654 GTCAACCCAGCGGCTTCTAT 60.108 55.000 0.00 0.00 0.00 1.98
228 229 0.107703 TCAACCCAGCGGCTTCTATG 60.108 55.000 0.00 0.00 0.00 2.23
229 230 0.107703 CAACCCAGCGGCTTCTATGA 60.108 55.000 0.00 0.00 0.00 2.15
230 231 0.179000 AACCCAGCGGCTTCTATGAG 59.821 55.000 0.00 0.00 0.00 2.90
231 232 1.070445 CCCAGCGGCTTCTATGAGG 59.930 63.158 0.00 0.00 0.00 3.86
232 233 1.402896 CCCAGCGGCTTCTATGAGGA 61.403 60.000 0.00 0.00 0.00 3.71
233 234 0.465705 CCAGCGGCTTCTATGAGGAA 59.534 55.000 0.00 0.00 0.00 3.36
234 235 1.539929 CCAGCGGCTTCTATGAGGAAG 60.540 57.143 0.00 0.00 43.80 3.46
235 236 0.755686 AGCGGCTTCTATGAGGAAGG 59.244 55.000 0.00 0.00 41.93 3.46
238 239 3.297391 GCTTCTATGAGGAAGGCGG 57.703 57.895 6.40 0.00 41.93 6.13
239 240 0.882484 GCTTCTATGAGGAAGGCGGC 60.882 60.000 0.00 0.00 41.93 6.53
240 241 0.250081 CTTCTATGAGGAAGGCGGCC 60.250 60.000 12.11 12.11 39.05 6.13
354 364 7.518370 CGTTATACCTAGCAATGGTGATGTTTC 60.518 40.741 0.00 0.00 38.42 2.78
357 370 5.815581 ACCTAGCAATGGTGATGTTTCTAA 58.184 37.500 0.00 0.00 36.30 2.10
360 373 6.375455 CCTAGCAATGGTGATGTTTCTAAGTT 59.625 38.462 0.00 0.00 0.00 2.66
375 391 8.238631 TGTTTCTAAGTTGTTACCTTGTTGAAC 58.761 33.333 0.00 0.00 0.00 3.18
376 392 6.930667 TCTAAGTTGTTACCTTGTTGAACC 57.069 37.500 0.00 0.00 0.00 3.62
388 405 0.521735 GTTGAACCCATTGCTCGGAC 59.478 55.000 0.00 0.00 0.00 4.79
394 421 0.609131 CCCATTGCTCGGACTGGTTT 60.609 55.000 0.00 0.00 0.00 3.27
395 422 0.804989 CCATTGCTCGGACTGGTTTC 59.195 55.000 0.00 0.00 0.00 2.78
408 435 2.158608 ACTGGTTTCTCAGGGTGAAAGG 60.159 50.000 0.00 0.00 38.98 3.11
414 441 5.374071 GTTTCTCAGGGTGAAAGGTTAGAA 58.626 41.667 0.00 0.00 34.58 2.10
461 490 0.172803 ACGATGGTACTTGAGCGTCC 59.827 55.000 0.00 0.00 38.18 4.79
465 494 0.251653 TGGTACTTGAGCGTCCCTCT 60.252 55.000 0.00 0.00 41.35 3.69
475 504 0.827368 GCGTCCCTCTCTTCCTGAAT 59.173 55.000 0.00 0.00 0.00 2.57
494 523 4.569966 TGAATGCGTTGCTGTTGAAAAATT 59.430 33.333 0.00 0.00 0.00 1.82
540 571 0.746923 GGTTGGTGCGGATAAGGTCC 60.747 60.000 0.00 0.00 44.10 4.46
549 580 2.934553 GCGGATAAGGTCCTTGTTGTAC 59.065 50.000 14.84 0.00 45.46 2.90
561 593 3.120199 CCTTGTTGTACTTTGCTGATCGG 60.120 47.826 0.00 0.00 0.00 4.18
582 622 4.248058 GGGGATCTCATTGCTTTGTTTTG 58.752 43.478 0.00 0.00 0.00 2.44
587 633 7.201723 GGGATCTCATTGCTTTGTTTTGTTTTT 60.202 33.333 0.00 0.00 0.00 1.94
588 634 7.852454 GGATCTCATTGCTTTGTTTTGTTTTTC 59.148 33.333 0.00 0.00 0.00 2.29
592 638 8.725212 TCATTGCTTTGTTTTGTTTTTCTTTG 57.275 26.923 0.00 0.00 0.00 2.77
602 658 3.020984 TGTTTTTCTTTGTCCTCGCCTT 58.979 40.909 0.00 0.00 0.00 4.35
610 666 1.035385 TGTCCTCGCCTTCGCATAGA 61.035 55.000 0.00 0.00 35.26 1.98
618 674 1.261619 GCCTTCGCATAGATTTGGTCG 59.738 52.381 0.00 0.00 34.03 4.79
631 687 9.476202 CATAGATTTGGTCGTATATGACTTTGA 57.524 33.333 21.52 8.61 38.91 2.69
648 704 2.867287 TGATATTTGCCGGCATGTTG 57.133 45.000 33.25 0.00 0.00 3.33
663 726 1.970447 TGTTGTTTGTGTGTGCGTTC 58.030 45.000 0.00 0.00 0.00 3.95
688 751 5.643777 GTGTTGACTATGTGCATCCTAACTT 59.356 40.000 0.00 0.00 0.00 2.66
695 758 3.485394 TGTGCATCCTAACTTTGCAGAA 58.515 40.909 0.00 0.00 46.18 3.02
698 761 2.751806 GCATCCTAACTTTGCAGAAGCT 59.248 45.455 8.09 0.00 42.74 3.74
714 777 1.805869 AGCTGAGTGTGTGCTCATTC 58.194 50.000 0.00 0.00 43.61 2.67
748 813 5.126707 CCTCTTGATGCTCCATTTTAAGCTT 59.873 40.000 3.48 3.48 39.31 3.74
750 815 7.148018 CCTCTTGATGCTCCATTTTAAGCTTAA 60.148 37.037 14.96 14.96 39.31 1.85
821 887 9.665719 AGTTTTTCACAAAAGTATGGTCAAAAT 57.334 25.926 0.00 0.00 34.32 1.82
827 893 9.743057 TCACAAAAGTATGGTCAAAATTAGTTG 57.257 29.630 0.00 0.00 0.00 3.16
828 894 8.977505 CACAAAAGTATGGTCAAAATTAGTTGG 58.022 33.333 0.00 0.00 0.00 3.77
829 895 8.700973 ACAAAAGTATGGTCAAAATTAGTTGGT 58.299 29.630 0.00 0.00 0.00 3.67
833 899 8.344446 AGTATGGTCAAAATTAGTTGGTAACC 57.656 34.615 0.00 0.00 0.00 2.85
834 900 6.599356 ATGGTCAAAATTAGTTGGTAACCC 57.401 37.500 0.00 0.00 0.00 4.11
835 901 4.833938 TGGTCAAAATTAGTTGGTAACCCC 59.166 41.667 0.00 0.00 0.00 4.95
836 902 5.081728 GGTCAAAATTAGTTGGTAACCCCT 58.918 41.667 0.00 0.00 0.00 4.79
837 903 5.184479 GGTCAAAATTAGTTGGTAACCCCTC 59.816 44.000 0.00 0.00 0.00 4.30
838 904 5.184479 GTCAAAATTAGTTGGTAACCCCTCC 59.816 44.000 0.00 0.00 0.00 4.30
839 905 5.081032 CAAAATTAGTTGGTAACCCCTCCA 58.919 41.667 0.00 0.00 0.00 3.86
840 906 5.342361 AAATTAGTTGGTAACCCCTCCAA 57.658 39.130 0.00 0.00 40.77 3.53
841 907 4.586306 ATTAGTTGGTAACCCCTCCAAG 57.414 45.455 0.00 0.00 43.16 3.61
842 908 1.829138 AGTTGGTAACCCCTCCAAGT 58.171 50.000 0.00 0.00 43.16 3.16
843 909 1.423921 AGTTGGTAACCCCTCCAAGTG 59.576 52.381 3.86 0.00 43.20 3.16
844 910 1.144298 GTTGGTAACCCCTCCAAGTGT 59.856 52.381 0.00 0.00 43.16 3.55
845 911 2.372837 GTTGGTAACCCCTCCAAGTGTA 59.627 50.000 0.00 0.00 43.16 2.90
846 912 2.262637 TGGTAACCCCTCCAAGTGTAG 58.737 52.381 0.00 0.00 0.00 2.74
847 913 1.065636 GGTAACCCCTCCAAGTGTAGC 60.066 57.143 0.00 0.00 0.00 3.58
848 914 1.626825 GTAACCCCTCCAAGTGTAGCA 59.373 52.381 0.00 0.00 0.00 3.49
849 915 0.693049 AACCCCTCCAAGTGTAGCAG 59.307 55.000 0.00 0.00 0.00 4.24
850 916 1.078143 CCCCTCCAAGTGTAGCAGC 60.078 63.158 0.00 0.00 0.00 5.25
851 917 1.448540 CCCTCCAAGTGTAGCAGCG 60.449 63.158 0.00 0.00 0.00 5.18
852 918 1.591703 CCTCCAAGTGTAGCAGCGA 59.408 57.895 0.00 0.00 0.00 4.93
853 919 0.737715 CCTCCAAGTGTAGCAGCGAC 60.738 60.000 0.00 0.00 0.00 5.19
854 920 0.038251 CTCCAAGTGTAGCAGCGACA 60.038 55.000 3.91 3.91 0.00 4.35
855 921 0.391228 TCCAAGTGTAGCAGCGACAA 59.609 50.000 10.24 0.00 0.00 3.18
856 922 1.202592 TCCAAGTGTAGCAGCGACAAA 60.203 47.619 10.24 0.00 0.00 2.83
857 923 1.195448 CCAAGTGTAGCAGCGACAAAG 59.805 52.381 10.24 3.41 0.00 2.77
858 924 2.135139 CAAGTGTAGCAGCGACAAAGA 58.865 47.619 10.24 0.00 0.00 2.52
859 925 1.784525 AGTGTAGCAGCGACAAAGAC 58.215 50.000 10.24 0.00 0.00 3.01
860 926 1.068588 AGTGTAGCAGCGACAAAGACA 59.931 47.619 10.24 0.00 0.00 3.41
861 927 1.192534 GTGTAGCAGCGACAAAGACAC 59.807 52.381 10.24 2.62 0.00 3.67
862 928 0.790814 GTAGCAGCGACAAAGACACC 59.209 55.000 0.00 0.00 0.00 4.16
863 929 0.391228 TAGCAGCGACAAAGACACCA 59.609 50.000 0.00 0.00 0.00 4.17
864 930 1.160329 AGCAGCGACAAAGACACCAC 61.160 55.000 0.00 0.00 0.00 4.16
865 931 1.564622 CAGCGACAAAGACACCACG 59.435 57.895 0.00 0.00 0.00 4.94
866 932 0.874175 CAGCGACAAAGACACCACGA 60.874 55.000 0.00 0.00 0.00 4.35
867 933 0.179094 AGCGACAAAGACACCACGAA 60.179 50.000 0.00 0.00 0.00 3.85
868 934 0.653636 GCGACAAAGACACCACGAAA 59.346 50.000 0.00 0.00 0.00 3.46
869 935 1.062880 GCGACAAAGACACCACGAAAA 59.937 47.619 0.00 0.00 0.00 2.29
870 936 2.286772 GCGACAAAGACACCACGAAAAT 60.287 45.455 0.00 0.00 0.00 1.82
871 937 3.288242 CGACAAAGACACCACGAAAATG 58.712 45.455 0.00 0.00 0.00 2.32
872 938 3.242608 CGACAAAGACACCACGAAAATGT 60.243 43.478 0.00 0.00 0.00 2.71
873 939 4.027572 ACAAAGACACCACGAAAATGTG 57.972 40.909 0.00 0.00 39.60 3.21
874 940 2.774439 AAGACACCACGAAAATGTGC 57.226 45.000 0.00 0.00 38.55 4.57
875 941 1.674359 AGACACCACGAAAATGTGCA 58.326 45.000 0.00 0.00 38.55 4.57
876 942 1.333619 AGACACCACGAAAATGTGCAC 59.666 47.619 10.75 10.75 38.55 4.57
877 943 0.028770 ACACCACGAAAATGTGCACG 59.971 50.000 13.13 0.87 38.55 5.34
878 944 1.008995 ACCACGAAAATGTGCACGC 60.009 52.632 13.13 0.00 38.55 5.34
879 945 1.282570 CCACGAAAATGTGCACGCT 59.717 52.632 13.13 0.00 38.55 5.07
880 946 0.515127 CCACGAAAATGTGCACGCTA 59.485 50.000 13.13 0.00 38.55 4.26
881 947 1.130373 CCACGAAAATGTGCACGCTAT 59.870 47.619 13.13 0.00 38.55 2.97
882 948 2.168384 CACGAAAATGTGCACGCTATG 58.832 47.619 13.13 2.82 32.31 2.23
883 949 1.804151 ACGAAAATGTGCACGCTATGT 59.196 42.857 13.13 3.49 0.00 2.29
884 950 2.997303 ACGAAAATGTGCACGCTATGTA 59.003 40.909 13.13 0.00 0.00 2.29
885 951 3.181524 ACGAAAATGTGCACGCTATGTAC 60.182 43.478 13.13 0.04 43.75 2.90
892 958 4.437858 GTGCACGCTATGTACACATTAG 57.562 45.455 0.00 0.00 43.20 1.73
893 959 2.863740 TGCACGCTATGTACACATTAGC 59.136 45.455 14.40 14.40 37.76 3.09
894 960 3.123804 GCACGCTATGTACACATTAGCT 58.876 45.455 19.59 8.43 37.76 3.32
895 961 3.060272 GCACGCTATGTACACATTAGCTG 60.060 47.826 19.59 17.06 37.76 4.24
896 962 4.112634 CACGCTATGTACACATTAGCTGT 58.887 43.478 19.59 16.40 39.20 4.40
897 963 4.566759 CACGCTATGTACACATTAGCTGTT 59.433 41.667 19.59 6.24 35.29 3.16
898 964 5.746721 CACGCTATGTACACATTAGCTGTTA 59.253 40.000 19.59 0.00 35.29 2.41
899 965 5.977725 ACGCTATGTACACATTAGCTGTTAG 59.022 40.000 19.59 9.86 35.29 2.34
900 966 5.977725 CGCTATGTACACATTAGCTGTTAGT 59.022 40.000 19.59 0.00 35.29 2.24
901 967 7.136772 CGCTATGTACACATTAGCTGTTAGTA 58.863 38.462 19.59 0.00 35.29 1.82
902 968 7.323895 CGCTATGTACACATTAGCTGTTAGTAG 59.676 40.741 19.59 5.92 35.29 2.57
903 969 8.136165 GCTATGTACACATTAGCTGTTAGTAGT 58.864 37.037 16.34 0.00 35.29 2.73
904 970 9.666626 CTATGTACACATTAGCTGTTAGTAGTC 57.333 37.037 0.00 0.00 35.29 2.59
905 971 7.698506 TGTACACATTAGCTGTTAGTAGTCT 57.301 36.000 0.00 0.00 35.29 3.24
906 972 7.535997 TGTACACATTAGCTGTTAGTAGTCTG 58.464 38.462 0.00 0.00 35.29 3.51
907 973 5.411781 ACACATTAGCTGTTAGTAGTCTGC 58.588 41.667 0.00 0.00 35.29 4.26
908 974 5.186021 ACACATTAGCTGTTAGTAGTCTGCT 59.814 40.000 0.00 0.00 40.71 4.24
909 975 5.746245 CACATTAGCTGTTAGTAGTCTGCTC 59.254 44.000 0.00 0.00 39.06 4.26
910 976 4.985538 TTAGCTGTTAGTAGTCTGCTCC 57.014 45.455 0.00 0.00 39.06 4.70
911 977 2.808919 AGCTGTTAGTAGTCTGCTCCA 58.191 47.619 0.00 0.00 34.69 3.86
912 978 3.165875 AGCTGTTAGTAGTCTGCTCCAA 58.834 45.455 0.00 0.00 34.69 3.53
913 979 3.578716 AGCTGTTAGTAGTCTGCTCCAAA 59.421 43.478 0.00 0.00 34.69 3.28
914 980 4.040461 AGCTGTTAGTAGTCTGCTCCAAAA 59.960 41.667 0.00 0.00 34.69 2.44
915 981 4.755123 GCTGTTAGTAGTCTGCTCCAAAAA 59.245 41.667 0.00 0.00 0.00 1.94
916 982 5.412904 GCTGTTAGTAGTCTGCTCCAAAAAT 59.587 40.000 0.00 0.00 0.00 1.82
917 983 6.594159 GCTGTTAGTAGTCTGCTCCAAAAATA 59.406 38.462 0.00 0.00 0.00 1.40
918 984 7.119262 GCTGTTAGTAGTCTGCTCCAAAAATAA 59.881 37.037 0.00 0.00 0.00 1.40
919 985 9.167311 CTGTTAGTAGTCTGCTCCAAAAATAAT 57.833 33.333 0.00 0.00 0.00 1.28
920 986 8.946085 TGTTAGTAGTCTGCTCCAAAAATAATG 58.054 33.333 0.00 0.00 0.00 1.90
921 987 8.398665 GTTAGTAGTCTGCTCCAAAAATAATGG 58.601 37.037 0.00 0.00 39.41 3.16
922 988 6.721318 AGTAGTCTGCTCCAAAAATAATGGA 58.279 36.000 0.00 0.00 44.58 3.41
923 989 7.175104 AGTAGTCTGCTCCAAAAATAATGGAA 58.825 34.615 0.00 0.00 45.96 3.53
924 990 6.272822 AGTCTGCTCCAAAAATAATGGAAC 57.727 37.500 0.00 0.00 45.96 3.62
925 991 5.774690 AGTCTGCTCCAAAAATAATGGAACA 59.225 36.000 0.00 0.00 45.96 3.18
936 1002 3.544772 TGGAACAGCGGAGTGACA 58.455 55.556 0.00 0.00 0.00 3.58
937 1003 1.826709 TGGAACAGCGGAGTGACAA 59.173 52.632 0.00 0.00 0.00 3.18
938 1004 0.249868 TGGAACAGCGGAGTGACAAG 60.250 55.000 0.00 0.00 0.00 3.16
939 1005 0.951040 GGAACAGCGGAGTGACAAGG 60.951 60.000 0.00 0.00 0.00 3.61
940 1006 0.249911 GAACAGCGGAGTGACAAGGT 60.250 55.000 0.00 0.00 0.00 3.50
941 1007 0.180406 AACAGCGGAGTGACAAGGTT 59.820 50.000 0.00 0.00 0.00 3.50
942 1008 0.180406 ACAGCGGAGTGACAAGGTTT 59.820 50.000 0.00 0.00 0.00 3.27
943 1009 1.308998 CAGCGGAGTGACAAGGTTTT 58.691 50.000 0.00 0.00 0.00 2.43
944 1010 1.002468 CAGCGGAGTGACAAGGTTTTG 60.002 52.381 0.00 0.00 40.24 2.44
945 1011 0.317854 GCGGAGTGACAAGGTTTTGC 60.318 55.000 0.00 0.00 37.85 3.68
946 1012 1.021202 CGGAGTGACAAGGTTTTGCA 58.979 50.000 0.00 0.00 37.85 4.08
947 1013 1.608590 CGGAGTGACAAGGTTTTGCAT 59.391 47.619 0.00 0.00 37.85 3.96
948 1014 2.811431 CGGAGTGACAAGGTTTTGCATA 59.189 45.455 0.00 0.00 37.85 3.14
949 1015 3.364964 CGGAGTGACAAGGTTTTGCATAC 60.365 47.826 0.00 0.00 37.85 2.39
950 1016 3.364964 GGAGTGACAAGGTTTTGCATACG 60.365 47.826 0.00 0.00 37.85 3.06
951 1017 3.472652 AGTGACAAGGTTTTGCATACGA 58.527 40.909 0.00 0.00 37.85 3.43
952 1018 3.880490 AGTGACAAGGTTTTGCATACGAA 59.120 39.130 0.00 0.00 37.85 3.85
953 1019 4.336993 AGTGACAAGGTTTTGCATACGAAA 59.663 37.500 0.00 0.00 37.85 3.46
954 1020 4.675114 GTGACAAGGTTTTGCATACGAAAG 59.325 41.667 0.00 0.00 37.85 2.62
955 1021 4.576873 TGACAAGGTTTTGCATACGAAAGA 59.423 37.500 0.00 0.00 37.85 2.52
956 1022 5.108385 ACAAGGTTTTGCATACGAAAGAG 57.892 39.130 0.00 0.00 37.85 2.85
968 1034 7.602753 TGCATACGAAAGAGTATATATGCAGT 58.397 34.615 11.58 0.00 45.98 4.40
1041 1113 1.160137 GCAAGGATGTTGACGAAGCT 58.840 50.000 0.00 0.00 0.00 3.74
1070 1142 2.335011 GCACAACCGTTCCTTGGC 59.665 61.111 0.00 0.00 0.00 4.52
1228 1307 4.261114 GGAGTAGTGTATGTAGGAGCGTTC 60.261 50.000 0.00 0.00 0.00 3.95
1231 1310 4.737855 AGTGTATGTAGGAGCGTTCAAT 57.262 40.909 0.53 0.00 0.00 2.57
1232 1311 5.847111 AGTGTATGTAGGAGCGTTCAATA 57.153 39.130 0.53 0.00 0.00 1.90
1233 1312 6.406692 AGTGTATGTAGGAGCGTTCAATAT 57.593 37.500 0.53 0.00 0.00 1.28
1389 1477 1.048601 GGGGTCTCGCTGGATATCAA 58.951 55.000 4.83 0.00 0.00 2.57
1455 1543 4.593597 TTATGTCTTTCCGCGTTTCATC 57.406 40.909 4.92 0.00 0.00 2.92
1483 1627 6.931838 TCGTATAATCTTCCTTGTGAGTTGT 58.068 36.000 0.00 0.00 0.00 3.32
1565 1729 2.434185 GGCATCGGCGACAAGACA 60.434 61.111 13.76 0.00 42.47 3.41
1675 1839 2.118403 AAACTCTGAGGGTCCTTCCA 57.882 50.000 9.85 0.00 38.11 3.53
1676 1840 2.350863 AACTCTGAGGGTCCTTCCAT 57.649 50.000 9.85 0.00 38.11 3.41
1677 1841 1.577736 ACTCTGAGGGTCCTTCCATG 58.422 55.000 9.85 0.00 38.11 3.66
1678 1842 0.179936 CTCTGAGGGTCCTTCCATGC 59.820 60.000 0.00 0.00 38.11 4.06
1679 1843 1.153289 CTGAGGGTCCTTCCATGCG 60.153 63.158 0.00 0.00 38.11 4.73
1680 1844 1.903877 CTGAGGGTCCTTCCATGCGT 61.904 60.000 0.00 0.00 38.11 5.24
1681 1845 1.450312 GAGGGTCCTTCCATGCGTG 60.450 63.158 0.00 0.00 38.11 5.34
1694 1858 2.923854 GCGTGGATTCATCGCTCG 59.076 61.111 12.04 0.00 45.29 5.03
1695 1859 2.923854 CGTGGATTCATCGCTCGC 59.076 61.111 0.00 0.00 0.00 5.03
1696 1860 2.920964 CGTGGATTCATCGCTCGCG 61.921 63.158 0.00 0.00 41.35 5.87
1697 1861 2.961721 TGGATTCATCGCTCGCGC 60.962 61.111 0.00 0.00 39.59 6.86
1698 1862 2.961721 GGATTCATCGCTCGCGCA 60.962 61.111 8.75 0.00 39.59 6.09
1699 1863 2.243810 GATTCATCGCTCGCGCAC 59.756 61.111 8.75 0.00 39.59 5.34
1700 1864 3.534350 GATTCATCGCTCGCGCACG 62.534 63.158 8.75 13.40 39.59 5.34
1756 1938 4.191544 TGCTAGCCAACTATGTTGATGAC 58.808 43.478 13.29 0.00 0.00 3.06
1818 2000 0.723414 CATCGCTCGTCATTGCTGTT 59.277 50.000 0.00 0.00 0.00 3.16
1849 2036 8.394877 TCGTGCTAGTGGTTATCAAAATTTATG 58.605 33.333 0.00 0.00 0.00 1.90
1926 5398 9.952188 TCACGTTTCATTGTGTATCAATAAAAA 57.048 25.926 0.00 0.00 43.93 1.94
1943 5415 2.687700 AAAATAATGCATGCCCGCAA 57.312 40.000 16.68 0.00 46.87 4.85
1944 5416 2.687700 AAATAATGCATGCCCGCAAA 57.312 40.000 16.68 0.00 46.87 3.68
1945 5417 2.687700 AATAATGCATGCCCGCAAAA 57.312 40.000 16.68 0.00 46.87 2.44
1992 5464 1.135139 AGCTTCGCTGATACACGATGT 59.865 47.619 0.00 0.00 37.57 3.06
2018 5490 6.142161 CACGGTGAAACATTAAGACACATTTG 59.858 38.462 0.74 0.00 39.98 2.32
2020 5492 6.514212 CGGTGAAACATTAAGACACATTTGGA 60.514 38.462 0.00 0.00 39.98 3.53
2022 5494 7.169140 GGTGAAACATTAAGACACATTTGGAAC 59.831 37.037 0.00 0.00 39.98 3.62
2023 5495 6.915300 TGAAACATTAAGACACATTTGGAACG 59.085 34.615 0.00 0.00 0.00 3.95
2024 5496 6.627395 AACATTAAGACACATTTGGAACGA 57.373 33.333 0.00 0.00 0.00 3.85
2025 5497 6.241207 ACATTAAGACACATTTGGAACGAG 57.759 37.500 0.00 0.00 0.00 4.18
2030 5504 5.828299 AGACACATTTGGAACGAGAAAAA 57.172 34.783 0.00 0.00 0.00 1.94
2110 5586 6.320672 AGGATGAATCTCAAATCAACCACATC 59.679 38.462 5.12 0.00 40.04 3.06
2150 5626 4.820173 GGGATTTCCGTCCTAGTTTATTGG 59.180 45.833 0.00 0.00 38.38 3.16
2151 5627 5.434408 GGATTTCCGTCCTAGTTTATTGGT 58.566 41.667 0.00 0.00 35.32 3.67
2152 5628 5.526479 GGATTTCCGTCCTAGTTTATTGGTC 59.474 44.000 0.00 0.00 35.32 4.02
2153 5629 4.476628 TTCCGTCCTAGTTTATTGGTCC 57.523 45.455 0.00 0.00 0.00 4.46
2154 5630 2.767960 TCCGTCCTAGTTTATTGGTCCC 59.232 50.000 0.00 0.00 0.00 4.46
2155 5631 2.158856 CCGTCCTAGTTTATTGGTCCCC 60.159 54.545 0.00 0.00 0.00 4.81
2158 5634 4.324022 CGTCCTAGTTTATTGGTCCCCTTT 60.324 45.833 0.00 0.00 0.00 3.11
2159 5635 4.948004 GTCCTAGTTTATTGGTCCCCTTTG 59.052 45.833 0.00 0.00 0.00 2.77
2162 5638 6.275144 TCCTAGTTTATTGGTCCCCTTTGTAA 59.725 38.462 0.00 0.00 0.00 2.41
2163 5639 7.036425 TCCTAGTTTATTGGTCCCCTTTGTAAT 60.036 37.037 0.00 0.00 0.00 1.89
2165 5641 7.865530 AGTTTATTGGTCCCCTTTGTAATTT 57.134 32.000 0.00 0.00 0.00 1.82
2169 5645 3.917300 TGGTCCCCTTTGTAATTTGTGT 58.083 40.909 0.00 0.00 0.00 3.72
2170 5646 3.892588 TGGTCCCCTTTGTAATTTGTGTC 59.107 43.478 0.00 0.00 0.00 3.67
2171 5647 3.892588 GGTCCCCTTTGTAATTTGTGTCA 59.107 43.478 0.00 0.00 0.00 3.58
2172 5648 4.342665 GGTCCCCTTTGTAATTTGTGTCAA 59.657 41.667 0.00 0.00 0.00 3.18
2173 5649 5.163395 GGTCCCCTTTGTAATTTGTGTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
2174 5650 6.463755 GGTCCCCTTTGTAATTTGTGTCAAAT 60.464 38.462 2.42 2.42 31.08 2.32
2175 5651 6.989759 GTCCCCTTTGTAATTTGTGTCAAATT 59.010 34.615 19.42 19.42 34.55 1.82
2177 5653 8.049721 TCCCCTTTGTAATTTGTGTCAAATTTT 58.950 29.630 20.29 6.18 32.64 1.82
2178 5654 9.331282 CCCCTTTGTAATTTGTGTCAAATTTTA 57.669 29.630 20.29 10.72 32.64 1.52
2217 5693 9.716507 ACTAACAAAATATTAATGCATGTCGAC 57.283 29.630 9.11 9.11 0.00 4.20
2218 5694 9.715123 CTAACAAAATATTAATGCATGTCGACA 57.285 29.630 22.48 22.48 0.00 4.35
2219 5695 8.978564 AACAAAATATTAATGCATGTCGACAA 57.021 26.923 24.13 6.61 0.00 3.18
2220 5696 8.978564 ACAAAATATTAATGCATGTCGACAAA 57.021 26.923 24.13 11.54 0.00 2.83
2221 5697 9.416794 ACAAAATATTAATGCATGTCGACAAAA 57.583 25.926 24.13 11.43 0.00 2.44
2230 5706 8.492920 AATGCATGTCGACAAAAATTATATCG 57.507 30.769 24.13 0.89 0.00 2.92
2231 5707 6.426327 TGCATGTCGACAAAAATTATATCGG 58.574 36.000 24.13 0.00 33.66 4.18
2232 5708 6.037720 TGCATGTCGACAAAAATTATATCGGT 59.962 34.615 24.13 0.00 33.66 4.69
2233 5709 6.356977 GCATGTCGACAAAAATTATATCGGTG 59.643 38.462 24.13 11.71 33.66 4.94
2234 5710 6.352682 TGTCGACAAAAATTATATCGGTGG 57.647 37.500 17.62 0.00 33.66 4.61
2235 5711 6.107343 TGTCGACAAAAATTATATCGGTGGA 58.893 36.000 17.62 0.00 33.66 4.02
2236 5712 6.764085 TGTCGACAAAAATTATATCGGTGGAT 59.236 34.615 17.62 0.00 36.65 3.41
2237 5713 7.281324 TGTCGACAAAAATTATATCGGTGGATT 59.719 33.333 17.62 0.00 34.00 3.01
2238 5714 7.797123 GTCGACAAAAATTATATCGGTGGATTC 59.203 37.037 11.55 0.00 34.00 2.52
2239 5715 7.496263 TCGACAAAAATTATATCGGTGGATTCA 59.504 33.333 0.00 0.00 34.00 2.57
2240 5716 8.289618 CGACAAAAATTATATCGGTGGATTCAT 58.710 33.333 0.00 0.00 34.00 2.57
2253 5729 9.793259 ATCGGTGGATTCATATTTAAACATAGT 57.207 29.630 0.00 0.00 0.00 2.12
2254 5730 9.621629 TCGGTGGATTCATATTTAAACATAGTT 57.378 29.630 0.00 0.00 0.00 2.24
2295 5771 8.604640 TTTTATGACATGCATGAACATTTTGT 57.395 26.923 32.75 16.89 37.87 2.83
2296 5772 9.702494 TTTTATGACATGCATGAACATTTTGTA 57.298 25.926 32.75 16.86 37.87 2.41
2300 5776 7.208777 TGACATGCATGAACATTTTGTAAGTT 58.791 30.769 32.75 4.26 0.00 2.66
2301 5777 8.355913 TGACATGCATGAACATTTTGTAAGTTA 58.644 29.630 32.75 0.00 0.00 2.24
2333 5809 8.908786 TGGTCAAAATTTGGCATAAAATACAA 57.091 26.923 12.62 0.00 36.88 2.41
2334 5810 9.512588 TGGTCAAAATTTGGCATAAAATACAAT 57.487 25.926 12.62 0.00 36.88 2.71
2335 5811 9.771915 GGTCAAAATTTGGCATAAAATACAATG 57.228 29.630 12.62 0.00 36.88 2.82
2336 5812 9.771915 GTCAAAATTTGGCATAAAATACAATGG 57.228 29.630 5.33 0.00 34.79 3.16
2337 5813 8.954350 TCAAAATTTGGCATAAAATACAATGGG 58.046 29.630 5.83 0.00 0.00 4.00
2338 5814 7.878547 AAATTTGGCATAAAATACAATGGGG 57.121 32.000 0.00 0.00 0.00 4.96
2339 5815 6.821616 ATTTGGCATAAAATACAATGGGGA 57.178 33.333 0.00 0.00 0.00 4.81
2340 5816 5.606348 TTGGCATAAAATACAATGGGGAC 57.394 39.130 0.00 0.00 0.00 4.46
2355 5831 2.904697 GGGACCTATAAACCAGGACG 57.095 55.000 0.00 0.00 36.61 4.79
2356 5832 1.415289 GGGACCTATAAACCAGGACGG 59.585 57.143 0.00 0.00 42.50 4.79
2357 5833 2.391678 GGACCTATAAACCAGGACGGA 58.608 52.381 0.00 0.00 38.63 4.69
2358 5834 2.364647 GGACCTATAAACCAGGACGGAG 59.635 54.545 0.00 0.00 38.63 4.63
2359 5835 2.364647 GACCTATAAACCAGGACGGAGG 59.635 54.545 0.00 0.00 38.63 4.30
2360 5836 2.292719 ACCTATAAACCAGGACGGAGGT 60.293 50.000 0.00 0.00 40.61 3.85
2361 5837 3.052642 ACCTATAAACCAGGACGGAGGTA 60.053 47.826 0.00 0.00 35.66 3.08
2362 5838 3.573110 CCTATAAACCAGGACGGAGGTAG 59.427 52.174 0.00 0.00 37.07 3.18
2363 5839 2.610438 TAAACCAGGACGGAGGTAGT 57.390 50.000 0.00 0.00 37.07 2.73
2364 5840 2.610438 AAACCAGGACGGAGGTAGTA 57.390 50.000 0.00 0.00 37.07 1.82
2365 5841 2.842645 AACCAGGACGGAGGTAGTAT 57.157 50.000 0.00 0.00 37.07 2.12
2366 5842 2.068834 ACCAGGACGGAGGTAGTATG 57.931 55.000 0.00 0.00 36.07 2.39
2367 5843 1.567649 ACCAGGACGGAGGTAGTATGA 59.432 52.381 0.00 0.00 36.07 2.15
2382 5858 9.610705 GAGGTAGTATGATGATGCAATGAATAT 57.389 33.333 0.00 0.00 0.00 1.28
2383 5859 9.392259 AGGTAGTATGATGATGCAATGAATATG 57.608 33.333 0.00 0.00 0.00 1.78
2447 5950 3.392431 CGACTCAAGCTCGCATGG 58.608 61.111 0.00 0.00 0.00 3.66
2480 6303 0.897621 ATCAGGTGTCGCTGTGATCA 59.102 50.000 0.00 0.00 0.00 2.92
2597 6423 2.874086 AGTGCGGTGTAAAAACAGTACC 59.126 45.455 0.00 0.00 32.79 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.941668 GCGAGACAAACCCTCAGGAAG 60.942 57.143 0.00 0.00 36.73 3.46
4 5 1.671742 GCGAGACAAACCCTCAGGA 59.328 57.895 0.00 0.00 36.73 3.86
5 6 1.376037 GGCGAGACAAACCCTCAGG 60.376 63.158 0.00 0.00 40.04 3.86
6 7 0.671781 CTGGCGAGACAAACCCTCAG 60.672 60.000 0.00 0.00 0.00 3.35
9 10 0.693049 AATCTGGCGAGACAAACCCT 59.307 50.000 0.00 0.00 0.00 4.34
10 11 1.200020 CAAATCTGGCGAGACAAACCC 59.800 52.381 0.00 0.00 0.00 4.11
11 12 1.200020 CCAAATCTGGCGAGACAAACC 59.800 52.381 0.00 0.00 35.39 3.27
23 24 2.226437 CCGAAGTCAACCACCAAATCTG 59.774 50.000 0.00 0.00 0.00 2.90
24 25 2.504367 CCGAAGTCAACCACCAAATCT 58.496 47.619 0.00 0.00 0.00 2.40
25 26 1.068541 GCCGAAGTCAACCACCAAATC 60.069 52.381 0.00 0.00 0.00 2.17
26 27 0.958822 GCCGAAGTCAACCACCAAAT 59.041 50.000 0.00 0.00 0.00 2.32
27 28 1.104577 GGCCGAAGTCAACCACCAAA 61.105 55.000 0.00 0.00 0.00 3.28
28 29 1.527380 GGCCGAAGTCAACCACCAA 60.527 57.895 0.00 0.00 0.00 3.67
29 30 2.112297 GGCCGAAGTCAACCACCA 59.888 61.111 0.00 0.00 0.00 4.17
31 32 3.723348 GCGGCCGAAGTCAACCAC 61.723 66.667 33.48 2.06 0.00 4.16
35 36 3.001902 ATCTCGCGGCCGAAGTCAA 62.002 57.895 33.48 9.80 43.87 3.18
36 37 3.449227 ATCTCGCGGCCGAAGTCA 61.449 61.111 33.48 10.56 43.87 3.41
37 38 2.956964 CATCTCGCGGCCGAAGTC 60.957 66.667 33.48 10.38 43.87 3.01
40 41 4.751093 TTGCATCTCGCGGCCGAA 62.751 61.111 33.48 15.60 46.97 4.30
41 42 4.751093 TTTGCATCTCGCGGCCGA 62.751 61.111 33.48 8.40 46.97 5.54
42 43 4.520846 GTTTGCATCTCGCGGCCG 62.521 66.667 24.05 24.05 46.97 6.13
44 45 1.457303 CTATAGTTTGCATCTCGCGGC 59.543 52.381 6.13 1.26 46.97 6.53
45 46 3.013276 TCTATAGTTTGCATCTCGCGG 57.987 47.619 6.13 0.00 46.97 6.46
46 47 4.264145 GCTATCTATAGTTTGCATCTCGCG 59.736 45.833 0.00 0.00 36.68 5.87
51 52 6.863645 TCAAGTCGCTATCTATAGTTTGCATC 59.136 38.462 14.72 8.40 32.96 3.91
52 53 6.642950 GTCAAGTCGCTATCTATAGTTTGCAT 59.357 38.462 14.72 0.00 32.96 3.96
53 54 5.977725 GTCAAGTCGCTATCTATAGTTTGCA 59.022 40.000 14.72 0.00 32.96 4.08
54 55 5.977725 TGTCAAGTCGCTATCTATAGTTTGC 59.022 40.000 0.00 3.57 32.96 3.68
56 57 7.336161 AGTGTCAAGTCGCTATCTATAGTTT 57.664 36.000 0.00 0.00 32.96 2.66
59 60 7.361371 CCCTAAGTGTCAAGTCGCTATCTATAG 60.361 44.444 0.00 0.00 0.00 1.31
60 61 6.430308 CCCTAAGTGTCAAGTCGCTATCTATA 59.570 42.308 0.00 0.00 0.00 1.31
61 62 5.241949 CCCTAAGTGTCAAGTCGCTATCTAT 59.758 44.000 0.00 0.00 0.00 1.98
62 63 4.579340 CCCTAAGTGTCAAGTCGCTATCTA 59.421 45.833 0.00 0.00 0.00 1.98
63 64 3.381908 CCCTAAGTGTCAAGTCGCTATCT 59.618 47.826 0.00 0.00 0.00 1.98
64 65 3.380637 TCCCTAAGTGTCAAGTCGCTATC 59.619 47.826 0.00 0.00 0.00 2.08
66 67 2.799017 TCCCTAAGTGTCAAGTCGCTA 58.201 47.619 0.00 0.00 0.00 4.26
67 68 1.629043 TCCCTAAGTGTCAAGTCGCT 58.371 50.000 0.00 0.00 0.00 4.93
68 69 2.271800 CATCCCTAAGTGTCAAGTCGC 58.728 52.381 0.00 0.00 0.00 5.19
69 70 2.233922 ACCATCCCTAAGTGTCAAGTCG 59.766 50.000 0.00 0.00 0.00 4.18
72 73 3.753272 CACAACCATCCCTAAGTGTCAAG 59.247 47.826 0.00 0.00 0.00 3.02
73 74 3.750371 CACAACCATCCCTAAGTGTCAA 58.250 45.455 0.00 0.00 0.00 3.18
74 75 2.552155 GCACAACCATCCCTAAGTGTCA 60.552 50.000 0.00 0.00 0.00 3.58
75 76 2.084546 GCACAACCATCCCTAAGTGTC 58.915 52.381 0.00 0.00 0.00 3.67
76 77 1.423541 TGCACAACCATCCCTAAGTGT 59.576 47.619 0.00 0.00 0.00 3.55
77 78 2.086869 CTGCACAACCATCCCTAAGTG 58.913 52.381 0.00 0.00 0.00 3.16
78 79 1.614317 GCTGCACAACCATCCCTAAGT 60.614 52.381 0.00 0.00 0.00 2.24
79 80 1.098050 GCTGCACAACCATCCCTAAG 58.902 55.000 0.00 0.00 0.00 2.18
80 81 0.676466 CGCTGCACAACCATCCCTAA 60.676 55.000 0.00 0.00 0.00 2.69
82 83 2.360350 CGCTGCACAACCATCCCT 60.360 61.111 0.00 0.00 0.00 4.20
84 85 2.562912 CACGCTGCACAACCATCC 59.437 61.111 0.00 0.00 0.00 3.51
85 86 2.260869 ACCACGCTGCACAACCATC 61.261 57.895 0.00 0.00 0.00 3.51
86 87 2.203337 ACCACGCTGCACAACCAT 60.203 55.556 0.00 0.00 0.00 3.55
87 88 2.956799 ATCACCACGCTGCACAACCA 62.957 55.000 0.00 0.00 0.00 3.67
88 89 1.795170 AATCACCACGCTGCACAACC 61.795 55.000 0.00 0.00 0.00 3.77
90 91 1.653667 CAATCACCACGCTGCACAA 59.346 52.632 0.00 0.00 0.00 3.33
91 92 2.260154 CCAATCACCACGCTGCACA 61.260 57.895 0.00 0.00 0.00 4.57
92 93 1.965930 TCCAATCACCACGCTGCAC 60.966 57.895 0.00 0.00 0.00 4.57
95 96 0.729116 GATGTCCAATCACCACGCTG 59.271 55.000 0.00 0.00 0.00 5.18
98 99 1.807139 TGTGATGTCCAATCACCACG 58.193 50.000 14.18 0.00 45.70 4.94
100 101 3.438216 ACATGTGATGTCCAATCACCA 57.562 42.857 14.18 5.02 45.70 4.17
101 102 3.313526 GCTACATGTGATGTCCAATCACC 59.686 47.826 9.11 0.19 45.70 4.02
103 104 4.193865 CAGCTACATGTGATGTCCAATCA 58.806 43.478 9.11 0.00 43.67 2.57
104 105 3.003068 GCAGCTACATGTGATGTCCAATC 59.997 47.826 9.11 0.00 43.67 2.67
106 107 2.026915 AGCAGCTACATGTGATGTCCAA 60.027 45.455 9.11 0.00 43.67 3.53
107 108 1.556451 AGCAGCTACATGTGATGTCCA 59.444 47.619 9.11 0.00 43.67 4.02
108 109 2.322355 AGCAGCTACATGTGATGTCC 57.678 50.000 9.11 0.00 43.67 4.02
109 110 3.005554 ACAAGCAGCTACATGTGATGTC 58.994 45.455 9.11 4.63 43.67 3.06
110 111 3.063510 ACAAGCAGCTACATGTGATGT 57.936 42.857 9.11 0.28 46.92 3.06
111 112 4.084693 CGATACAAGCAGCTACATGTGATG 60.085 45.833 9.11 8.76 0.00 3.07
112 113 4.053983 CGATACAAGCAGCTACATGTGAT 58.946 43.478 9.11 0.00 0.00 3.06
115 116 3.119137 TCACGATACAAGCAGCTACATGT 60.119 43.478 2.69 2.69 0.00 3.21
116 117 3.447742 TCACGATACAAGCAGCTACATG 58.552 45.455 0.00 0.00 0.00 3.21
117 118 3.801114 TCACGATACAAGCAGCTACAT 57.199 42.857 0.00 0.00 0.00 2.29
118 119 3.586100 TTCACGATACAAGCAGCTACA 57.414 42.857 0.00 0.00 0.00 2.74
119 120 4.921470 TTTTCACGATACAAGCAGCTAC 57.079 40.909 0.00 0.00 0.00 3.58
120 121 4.994852 AGTTTTTCACGATACAAGCAGCTA 59.005 37.500 0.00 0.00 0.00 3.32
121 122 3.815401 AGTTTTTCACGATACAAGCAGCT 59.185 39.130 0.00 0.00 0.00 4.24
122 123 3.908382 CAGTTTTTCACGATACAAGCAGC 59.092 43.478 0.00 0.00 0.00 5.25
124 125 3.880490 ACCAGTTTTTCACGATACAAGCA 59.120 39.130 0.00 0.00 0.00 3.91
127 128 3.566322 CCCACCAGTTTTTCACGATACAA 59.434 43.478 0.00 0.00 0.00 2.41
129 130 2.486592 CCCCACCAGTTTTTCACGATAC 59.513 50.000 0.00 0.00 0.00 2.24
132 133 0.256464 ACCCCACCAGTTTTTCACGA 59.744 50.000 0.00 0.00 0.00 4.35
133 134 0.666374 GACCCCACCAGTTTTTCACG 59.334 55.000 0.00 0.00 0.00 4.35
135 136 1.850345 AGAGACCCCACCAGTTTTTCA 59.150 47.619 0.00 0.00 0.00 2.69
136 137 2.505405 GAGAGACCCCACCAGTTTTTC 58.495 52.381 0.00 0.00 0.00 2.29
138 139 0.396811 CGAGAGACCCCACCAGTTTT 59.603 55.000 0.00 0.00 0.00 2.43
139 140 0.763223 ACGAGAGACCCCACCAGTTT 60.763 55.000 0.00 0.00 0.00 2.66
140 141 1.152312 ACGAGAGACCCCACCAGTT 60.152 57.895 0.00 0.00 0.00 3.16
141 142 1.908793 CACGAGAGACCCCACCAGT 60.909 63.158 0.00 0.00 0.00 4.00
142 143 2.650116 CCACGAGAGACCCCACCAG 61.650 68.421 0.00 0.00 0.00 4.00
143 144 2.603473 CCACGAGAGACCCCACCA 60.603 66.667 0.00 0.00 0.00 4.17
144 145 4.083862 GCCACGAGAGACCCCACC 62.084 72.222 0.00 0.00 0.00 4.61
145 146 4.083862 GGCCACGAGAGACCCCAC 62.084 72.222 0.00 0.00 0.00 4.61
146 147 4.631740 TGGCCACGAGAGACCCCA 62.632 66.667 0.00 0.00 0.00 4.96
147 148 2.198304 ATTTGGCCACGAGAGACCCC 62.198 60.000 3.88 0.00 0.00 4.95
148 149 0.322546 AATTTGGCCACGAGAGACCC 60.323 55.000 3.88 0.00 0.00 4.46
149 150 1.087501 GAATTTGGCCACGAGAGACC 58.912 55.000 3.88 0.00 0.00 3.85
150 151 2.100605 AGAATTTGGCCACGAGAGAC 57.899 50.000 3.88 0.00 0.00 3.36
151 152 2.859165 AAGAATTTGGCCACGAGAGA 57.141 45.000 3.88 0.00 0.00 3.10
152 153 6.677781 TTAATAAGAATTTGGCCACGAGAG 57.322 37.500 3.88 0.00 0.00 3.20
154 155 5.743872 GCTTTAATAAGAATTTGGCCACGAG 59.256 40.000 3.88 0.00 32.92 4.18
157 158 5.977635 AGGCTTTAATAAGAATTTGGCCAC 58.022 37.500 3.88 0.00 36.29 5.01
158 159 6.440328 AGAAGGCTTTAATAAGAATTTGGCCA 59.560 34.615 0.00 0.00 36.29 5.36
159 160 6.878317 AGAAGGCTTTAATAAGAATTTGGCC 58.122 36.000 0.00 0.00 35.17 5.36
160 161 7.776107 AGAGAAGGCTTTAATAAGAATTTGGC 58.224 34.615 0.00 0.00 32.92 4.52
163 164 9.975218 TGGTAGAGAAGGCTTTAATAAGAATTT 57.025 29.630 0.00 0.00 32.92 1.82
166 167 9.396022 CAATGGTAGAGAAGGCTTTAATAAGAA 57.604 33.333 0.00 0.00 32.92 2.52
167 168 8.768397 TCAATGGTAGAGAAGGCTTTAATAAGA 58.232 33.333 0.00 0.00 32.92 2.10
168 169 8.964476 TCAATGGTAGAGAAGGCTTTAATAAG 57.036 34.615 0.00 0.00 34.36 1.73
169 170 9.920946 ATTCAATGGTAGAGAAGGCTTTAATAA 57.079 29.630 0.00 0.00 0.00 1.40
171 172 8.829373 AATTCAATGGTAGAGAAGGCTTTAAT 57.171 30.769 0.00 0.00 0.00 1.40
172 173 7.065803 CGAATTCAATGGTAGAGAAGGCTTTAA 59.934 37.037 0.00 0.00 0.00 1.52
173 174 6.538742 CGAATTCAATGGTAGAGAAGGCTTTA 59.461 38.462 0.00 0.00 0.00 1.85
174 175 5.355350 CGAATTCAATGGTAGAGAAGGCTTT 59.645 40.000 0.00 0.00 0.00 3.51
177 178 3.561725 CCGAATTCAATGGTAGAGAAGGC 59.438 47.826 6.22 0.00 0.00 4.35
178 179 3.561725 GCCGAATTCAATGGTAGAGAAGG 59.438 47.826 6.22 0.00 0.00 3.46
179 180 3.561725 GGCCGAATTCAATGGTAGAGAAG 59.438 47.826 6.22 0.00 0.00 2.85
180 181 3.199946 AGGCCGAATTCAATGGTAGAGAA 59.800 43.478 6.22 0.00 0.00 2.87
181 182 2.771943 AGGCCGAATTCAATGGTAGAGA 59.228 45.455 6.22 0.00 0.00 3.10
182 183 3.199880 AGGCCGAATTCAATGGTAGAG 57.800 47.619 6.22 0.00 0.00 2.43
183 184 3.541632 GAAGGCCGAATTCAATGGTAGA 58.458 45.455 6.22 0.00 0.00 2.59
184 185 2.287915 CGAAGGCCGAATTCAATGGTAG 59.712 50.000 6.22 0.00 41.76 3.18
185 186 2.285083 CGAAGGCCGAATTCAATGGTA 58.715 47.619 6.22 0.00 41.76 3.25
187 188 0.381801 CCGAAGGCCGAATTCAATGG 59.618 55.000 6.22 0.00 46.14 3.16
207 208 2.180159 TAGAAGCCGCTGGGTTGACC 62.180 60.000 15.05 3.51 43.92 4.02
208 209 0.107654 ATAGAAGCCGCTGGGTTGAC 60.108 55.000 15.05 4.10 43.92 3.18
209 210 0.107703 CATAGAAGCCGCTGGGTTGA 60.108 55.000 15.05 5.34 43.92 3.18
210 211 0.107703 TCATAGAAGCCGCTGGGTTG 60.108 55.000 15.05 3.96 43.92 3.77
211 212 0.179000 CTCATAGAAGCCGCTGGGTT 59.821 55.000 10.98 10.98 46.75 4.11
212 213 1.690219 CCTCATAGAAGCCGCTGGGT 61.690 60.000 0.00 0.00 34.97 4.51
213 214 1.070445 CCTCATAGAAGCCGCTGGG 59.930 63.158 0.00 0.00 0.00 4.45
214 215 0.465705 TTCCTCATAGAAGCCGCTGG 59.534 55.000 0.00 0.00 0.00 4.85
215 216 1.539929 CCTTCCTCATAGAAGCCGCTG 60.540 57.143 0.00 0.00 41.65 5.18
216 217 0.755686 CCTTCCTCATAGAAGCCGCT 59.244 55.000 0.00 0.00 41.65 5.52
217 218 0.882484 GCCTTCCTCATAGAAGCCGC 60.882 60.000 0.00 0.00 41.65 6.53
218 219 0.598680 CGCCTTCCTCATAGAAGCCG 60.599 60.000 0.00 0.00 41.65 5.52
219 220 0.250081 CCGCCTTCCTCATAGAAGCC 60.250 60.000 0.00 0.00 41.65 4.35
220 221 0.882484 GCCGCCTTCCTCATAGAAGC 60.882 60.000 0.00 0.00 41.65 3.86
221 222 0.250081 GGCCGCCTTCCTCATAGAAG 60.250 60.000 0.71 0.00 42.46 2.85
222 223 1.830145 GGCCGCCTTCCTCATAGAA 59.170 57.895 0.71 0.00 0.00 2.10
223 224 2.498941 CGGCCGCCTTCCTCATAGA 61.499 63.158 14.67 0.00 0.00 1.98
224 225 2.029666 CGGCCGCCTTCCTCATAG 59.970 66.667 14.67 0.00 0.00 2.23
225 226 4.235762 GCGGCCGCCTTCCTCATA 62.236 66.667 39.89 0.00 34.56 2.15
231 232 4.700365 GTTGTTGCGGCCGCCTTC 62.700 66.667 44.42 32.34 41.09 3.46
235 236 4.264638 AAGTGTTGTTGCGGCCGC 62.265 61.111 42.35 42.35 42.35 6.53
236 237 2.353376 CAAGTGTTGTTGCGGCCG 60.353 61.111 24.05 24.05 0.00 6.13
237 238 1.008538 CTCAAGTGTTGTTGCGGCC 60.009 57.895 0.00 0.00 0.00 6.13
238 239 0.592247 CACTCAAGTGTTGTTGCGGC 60.592 55.000 1.88 0.00 40.96 6.53
239 240 1.013596 TCACTCAAGTGTTGTTGCGG 58.986 50.000 9.82 0.00 45.76 5.69
240 241 1.665679 AGTCACTCAAGTGTTGTTGCG 59.334 47.619 9.82 0.00 45.76 4.85
328 335 5.297547 ACATCACCATTGCTAGGTATAACG 58.702 41.667 0.00 0.00 37.23 3.18
354 364 5.591067 TGGGTTCAACAAGGTAACAACTTAG 59.409 40.000 0.00 0.00 41.41 2.18
357 370 3.970842 TGGGTTCAACAAGGTAACAACT 58.029 40.909 0.00 0.00 41.41 3.16
360 373 3.068873 GCAATGGGTTCAACAAGGTAACA 59.931 43.478 0.00 0.00 41.41 2.41
375 391 0.609131 AAACCAGTCCGAGCAATGGG 60.609 55.000 0.00 0.00 37.13 4.00
376 392 0.804989 GAAACCAGTCCGAGCAATGG 59.195 55.000 0.00 0.00 38.83 3.16
388 405 2.158608 ACCTTTCACCCTGAGAAACCAG 60.159 50.000 0.00 0.00 32.09 4.00
394 421 5.046304 CAGATTCTAACCTTTCACCCTGAGA 60.046 44.000 0.00 0.00 0.00 3.27
395 422 5.046304 TCAGATTCTAACCTTTCACCCTGAG 60.046 44.000 0.00 0.00 0.00 3.35
408 435 8.529476 TCCAACTACTTAAGGTCAGATTCTAAC 58.471 37.037 7.53 0.00 0.00 2.34
414 441 5.069251 CGGATCCAACTACTTAAGGTCAGAT 59.931 44.000 13.41 1.49 0.00 2.90
428 457 0.175760 CATCGTCACCGGATCCAACT 59.824 55.000 9.46 0.00 33.95 3.16
461 490 2.005451 CAACGCATTCAGGAAGAGAGG 58.995 52.381 0.00 0.00 0.00 3.69
465 494 1.159285 CAGCAACGCATTCAGGAAGA 58.841 50.000 0.00 0.00 0.00 2.87
475 504 5.105752 ACTAAATTTTTCAACAGCAACGCA 58.894 33.333 0.00 0.00 0.00 5.24
494 523 4.221041 TCATAACACCACATGGACGACTAA 59.779 41.667 4.53 0.00 38.94 2.24
540 571 3.120199 CCCGATCAGCAAAGTACAACAAG 60.120 47.826 0.00 0.00 0.00 3.16
549 580 1.139654 TGAGATCCCCGATCAGCAAAG 59.860 52.381 4.56 0.00 41.12 2.77
561 593 4.886579 ACAAAACAAAGCAATGAGATCCC 58.113 39.130 0.00 0.00 0.00 3.85
582 622 3.629058 GAAGGCGAGGACAAAGAAAAAC 58.371 45.455 0.00 0.00 0.00 2.43
587 633 1.374252 GCGAAGGCGAGGACAAAGA 60.374 57.895 0.00 0.00 40.82 2.52
588 634 1.021390 ATGCGAAGGCGAGGACAAAG 61.021 55.000 0.00 0.00 44.10 2.77
592 638 0.315568 ATCTATGCGAAGGCGAGGAC 59.684 55.000 0.00 0.00 44.10 3.85
602 658 6.072119 AGTCATATACGACCAAATCTATGCGA 60.072 38.462 0.00 0.00 36.52 5.10
618 674 6.072728 TGCCGGCAAATATCAAAGTCATATAC 60.073 38.462 30.74 0.00 0.00 1.47
631 687 3.260740 CAAACAACATGCCGGCAAATAT 58.739 40.909 36.33 15.14 0.00 1.28
648 704 0.179210 ACACGAACGCACACACAAAC 60.179 50.000 0.00 0.00 0.00 2.93
663 726 2.621338 AGGATGCACATAGTCAACACG 58.379 47.619 0.00 0.00 0.00 4.49
688 751 1.302366 CACACACTCAGCTTCTGCAA 58.698 50.000 0.00 0.00 42.74 4.08
714 777 4.574013 GGAGCATCAAGAGGATACAAACAG 59.426 45.833 0.00 0.00 36.25 3.16
795 861 9.665719 ATTTTGACCATACTTTTGTGAAAAACT 57.334 25.926 0.00 0.00 0.00 2.66
801 867 9.743057 CAACTAATTTTGACCATACTTTTGTGA 57.257 29.630 0.00 0.00 0.00 3.58
802 868 8.977505 CCAACTAATTTTGACCATACTTTTGTG 58.022 33.333 0.00 0.00 0.00 3.33
803 869 8.700973 ACCAACTAATTTTGACCATACTTTTGT 58.299 29.630 0.00 0.00 0.00 2.83
807 873 8.799367 GGTTACCAACTAATTTTGACCATACTT 58.201 33.333 0.00 0.00 0.00 2.24
808 874 7.395206 GGGTTACCAACTAATTTTGACCATACT 59.605 37.037 2.98 0.00 36.50 2.12
809 875 7.363181 GGGGTTACCAACTAATTTTGACCATAC 60.363 40.741 2.98 0.00 39.85 2.39
810 876 6.664384 GGGGTTACCAACTAATTTTGACCATA 59.336 38.462 2.98 0.00 39.85 2.74
811 877 5.482526 GGGGTTACCAACTAATTTTGACCAT 59.517 40.000 2.98 0.00 39.85 3.55
812 878 4.833938 GGGGTTACCAACTAATTTTGACCA 59.166 41.667 2.98 0.00 39.85 4.02
813 879 5.081728 AGGGGTTACCAACTAATTTTGACC 58.918 41.667 2.98 0.00 43.89 4.02
814 880 5.184479 GGAGGGGTTACCAACTAATTTTGAC 59.816 44.000 2.98 0.00 43.89 3.18
815 881 5.162969 TGGAGGGGTTACCAACTAATTTTGA 60.163 40.000 2.98 0.00 43.89 2.69
816 882 5.081032 TGGAGGGGTTACCAACTAATTTTG 58.919 41.667 2.98 0.00 43.89 2.44
817 883 5.342361 TGGAGGGGTTACCAACTAATTTT 57.658 39.130 2.98 0.00 43.89 1.82
818 884 5.162914 ACTTGGAGGGGTTACCAACTAATTT 60.163 40.000 2.98 0.00 43.89 1.82
819 885 4.355889 ACTTGGAGGGGTTACCAACTAATT 59.644 41.667 2.98 0.00 43.89 1.40
820 886 3.920841 ACTTGGAGGGGTTACCAACTAAT 59.079 43.478 2.98 0.00 43.89 1.73
821 887 3.073356 CACTTGGAGGGGTTACCAACTAA 59.927 47.826 2.98 0.00 43.89 2.24
822 888 2.640826 CACTTGGAGGGGTTACCAACTA 59.359 50.000 2.98 0.00 43.89 2.24
823 889 1.423921 CACTTGGAGGGGTTACCAACT 59.576 52.381 2.98 0.00 43.89 3.16
824 890 1.144298 ACACTTGGAGGGGTTACCAAC 59.856 52.381 2.98 0.00 43.89 3.77
825 891 1.525175 ACACTTGGAGGGGTTACCAA 58.475 50.000 2.98 0.00 43.89 3.67
826 892 2.262637 CTACACTTGGAGGGGTTACCA 58.737 52.381 2.98 0.00 43.89 3.25
827 893 1.065636 GCTACACTTGGAGGGGTTACC 60.066 57.143 0.00 0.00 40.67 2.85
828 894 1.626825 TGCTACACTTGGAGGGGTTAC 59.373 52.381 0.00 0.00 0.00 2.50
829 895 1.906574 CTGCTACACTTGGAGGGGTTA 59.093 52.381 0.00 0.00 0.00 2.85
830 896 0.693049 CTGCTACACTTGGAGGGGTT 59.307 55.000 0.00 0.00 0.00 4.11
831 897 1.842381 GCTGCTACACTTGGAGGGGT 61.842 60.000 0.00 0.00 0.00 4.95
832 898 1.078143 GCTGCTACACTTGGAGGGG 60.078 63.158 0.00 0.00 0.00 4.79
833 899 1.448540 CGCTGCTACACTTGGAGGG 60.449 63.158 0.00 0.00 0.00 4.30
834 900 0.737715 GTCGCTGCTACACTTGGAGG 60.738 60.000 0.00 0.00 0.00 4.30
835 901 0.038251 TGTCGCTGCTACACTTGGAG 60.038 55.000 2.55 0.00 0.00 3.86
836 902 0.391228 TTGTCGCTGCTACACTTGGA 59.609 50.000 6.49 0.00 0.00 3.53
837 903 1.195448 CTTTGTCGCTGCTACACTTGG 59.805 52.381 6.49 0.00 0.00 3.61
838 904 2.096713 GTCTTTGTCGCTGCTACACTTG 60.097 50.000 6.49 1.03 0.00 3.16
839 905 2.135933 GTCTTTGTCGCTGCTACACTT 58.864 47.619 6.49 0.00 0.00 3.16
840 906 1.068588 TGTCTTTGTCGCTGCTACACT 59.931 47.619 6.49 0.00 0.00 3.55
841 907 1.192534 GTGTCTTTGTCGCTGCTACAC 59.807 52.381 6.49 1.96 0.00 2.90
842 908 1.497991 GTGTCTTTGTCGCTGCTACA 58.502 50.000 2.55 2.55 0.00 2.74
843 909 0.790814 GGTGTCTTTGTCGCTGCTAC 59.209 55.000 0.00 0.00 0.00 3.58
844 910 0.391228 TGGTGTCTTTGTCGCTGCTA 59.609 50.000 0.00 0.00 0.00 3.49
845 911 1.146041 TGGTGTCTTTGTCGCTGCT 59.854 52.632 0.00 0.00 0.00 4.24
846 912 1.279840 GTGGTGTCTTTGTCGCTGC 59.720 57.895 0.00 0.00 0.00 5.25
847 913 0.874175 TCGTGGTGTCTTTGTCGCTG 60.874 55.000 0.00 0.00 0.00 5.18
848 914 0.179094 TTCGTGGTGTCTTTGTCGCT 60.179 50.000 0.00 0.00 0.00 4.93
849 915 0.653636 TTTCGTGGTGTCTTTGTCGC 59.346 50.000 0.00 0.00 0.00 5.19
850 916 3.242608 ACATTTTCGTGGTGTCTTTGTCG 60.243 43.478 0.00 0.00 0.00 4.35
851 917 4.035017 CACATTTTCGTGGTGTCTTTGTC 58.965 43.478 0.00 0.00 33.05 3.18
852 918 3.733684 GCACATTTTCGTGGTGTCTTTGT 60.734 43.478 0.00 0.00 37.37 2.83
853 919 2.788786 GCACATTTTCGTGGTGTCTTTG 59.211 45.455 0.00 0.00 37.37 2.77
854 920 2.425312 TGCACATTTTCGTGGTGTCTTT 59.575 40.909 0.00 0.00 37.37 2.52
855 921 2.020720 TGCACATTTTCGTGGTGTCTT 58.979 42.857 0.00 0.00 37.37 3.01
856 922 1.333619 GTGCACATTTTCGTGGTGTCT 59.666 47.619 13.17 0.00 37.37 3.41
857 923 1.753956 GTGCACATTTTCGTGGTGTC 58.246 50.000 13.17 0.00 37.37 3.67
858 924 0.028770 CGTGCACATTTTCGTGGTGT 59.971 50.000 18.64 0.00 37.37 4.16
859 925 1.268113 GCGTGCACATTTTCGTGGTG 61.268 55.000 18.64 0.00 37.37 4.17
860 926 1.008995 GCGTGCACATTTTCGTGGT 60.009 52.632 18.64 0.00 37.37 4.16
861 927 0.515127 TAGCGTGCACATTTTCGTGG 59.485 50.000 18.64 0.00 37.37 4.94
862 928 2.168384 CATAGCGTGCACATTTTCGTG 58.832 47.619 18.64 2.10 40.00 4.35
863 929 1.804151 ACATAGCGTGCACATTTTCGT 59.196 42.857 18.64 3.29 0.00 3.85
864 930 2.525750 ACATAGCGTGCACATTTTCG 57.474 45.000 18.64 2.27 0.00 3.46
865 931 4.335082 TGTACATAGCGTGCACATTTTC 57.665 40.909 18.64 0.00 35.03 2.29
872 938 2.863740 GCTAATGTGTACATAGCGTGCA 59.136 45.455 10.38 0.00 37.96 4.57
873 939 3.060272 CAGCTAATGTGTACATAGCGTGC 60.060 47.826 17.18 10.09 37.69 5.34
874 940 4.112634 ACAGCTAATGTGTACATAGCGTG 58.887 43.478 17.18 16.76 41.91 5.34
875 941 4.386867 ACAGCTAATGTGTACATAGCGT 57.613 40.909 17.18 15.25 41.91 5.07
876 942 5.977725 ACTAACAGCTAATGTGTACATAGCG 59.022 40.000 17.18 14.79 43.00 4.26
877 943 8.136165 ACTACTAACAGCTAATGTGTACATAGC 58.864 37.037 16.00 16.00 43.00 2.97
878 944 9.666626 GACTACTAACAGCTAATGTGTACATAG 57.333 37.037 0.00 0.00 43.00 2.23
879 945 9.404848 AGACTACTAACAGCTAATGTGTACATA 57.595 33.333 0.00 0.00 43.00 2.29
880 946 8.191446 CAGACTACTAACAGCTAATGTGTACAT 58.809 37.037 0.00 0.00 43.00 2.29
881 947 7.535997 CAGACTACTAACAGCTAATGTGTACA 58.464 38.462 0.00 0.00 43.00 2.90
882 948 6.472808 GCAGACTACTAACAGCTAATGTGTAC 59.527 42.308 0.00 0.00 43.00 2.90
883 949 6.377429 AGCAGACTACTAACAGCTAATGTGTA 59.623 38.462 0.00 0.00 43.00 2.90
884 950 5.186021 AGCAGACTACTAACAGCTAATGTGT 59.814 40.000 0.00 0.00 43.00 3.72
885 951 5.655488 AGCAGACTACTAACAGCTAATGTG 58.345 41.667 0.00 0.00 43.00 3.21
886 952 5.163499 GGAGCAGACTACTAACAGCTAATGT 60.163 44.000 0.00 0.00 46.97 2.71
887 953 5.163509 TGGAGCAGACTACTAACAGCTAATG 60.164 44.000 0.00 0.00 31.61 1.90
888 954 4.956700 TGGAGCAGACTACTAACAGCTAAT 59.043 41.667 0.00 0.00 31.61 1.73
889 955 4.341487 TGGAGCAGACTACTAACAGCTAA 58.659 43.478 0.00 0.00 31.61 3.09
890 956 3.964411 TGGAGCAGACTACTAACAGCTA 58.036 45.455 0.00 0.00 31.61 3.32
891 957 2.808919 TGGAGCAGACTACTAACAGCT 58.191 47.619 0.00 0.00 34.61 4.24
892 958 3.594603 TTGGAGCAGACTACTAACAGC 57.405 47.619 0.00 0.00 0.00 4.40
893 959 8.547967 TTATTTTTGGAGCAGACTACTAACAG 57.452 34.615 0.00 0.00 0.00 3.16
894 960 8.946085 CATTATTTTTGGAGCAGACTACTAACA 58.054 33.333 0.00 0.00 0.00 2.41
895 961 8.398665 CCATTATTTTTGGAGCAGACTACTAAC 58.601 37.037 0.00 0.00 36.26 2.34
896 962 8.325787 TCCATTATTTTTGGAGCAGACTACTAA 58.674 33.333 0.00 0.00 38.35 2.24
897 963 7.857456 TCCATTATTTTTGGAGCAGACTACTA 58.143 34.615 0.00 0.00 38.35 1.82
898 964 6.721318 TCCATTATTTTTGGAGCAGACTACT 58.279 36.000 0.00 0.00 38.35 2.57
899 965 7.094377 TGTTCCATTATTTTTGGAGCAGACTAC 60.094 37.037 5.31 0.00 45.83 2.73
900 966 6.945435 TGTTCCATTATTTTTGGAGCAGACTA 59.055 34.615 5.31 0.00 45.83 2.59
901 967 5.774690 TGTTCCATTATTTTTGGAGCAGACT 59.225 36.000 5.31 0.00 45.83 3.24
902 968 6.024552 TGTTCCATTATTTTTGGAGCAGAC 57.975 37.500 5.31 0.00 45.83 3.51
906 972 3.859386 CGCTGTTCCATTATTTTTGGAGC 59.141 43.478 0.21 0.21 43.87 4.70
907 973 4.157656 TCCGCTGTTCCATTATTTTTGGAG 59.842 41.667 0.00 0.00 43.87 3.86
908 974 4.082845 TCCGCTGTTCCATTATTTTTGGA 58.917 39.130 0.00 0.00 41.50 3.53
909 975 4.082245 ACTCCGCTGTTCCATTATTTTTGG 60.082 41.667 0.00 0.00 35.45 3.28
910 976 4.858692 CACTCCGCTGTTCCATTATTTTTG 59.141 41.667 0.00 0.00 0.00 2.44
911 977 4.764823 TCACTCCGCTGTTCCATTATTTTT 59.235 37.500 0.00 0.00 0.00 1.94
912 978 4.156008 GTCACTCCGCTGTTCCATTATTTT 59.844 41.667 0.00 0.00 0.00 1.82
913 979 3.689649 GTCACTCCGCTGTTCCATTATTT 59.310 43.478 0.00 0.00 0.00 1.40
914 980 3.270877 GTCACTCCGCTGTTCCATTATT 58.729 45.455 0.00 0.00 0.00 1.40
915 981 2.236146 TGTCACTCCGCTGTTCCATTAT 59.764 45.455 0.00 0.00 0.00 1.28
916 982 1.621317 TGTCACTCCGCTGTTCCATTA 59.379 47.619 0.00 0.00 0.00 1.90
917 983 0.396435 TGTCACTCCGCTGTTCCATT 59.604 50.000 0.00 0.00 0.00 3.16
918 984 0.396435 TTGTCACTCCGCTGTTCCAT 59.604 50.000 0.00 0.00 0.00 3.41
919 985 0.249868 CTTGTCACTCCGCTGTTCCA 60.250 55.000 0.00 0.00 0.00 3.53
920 986 0.951040 CCTTGTCACTCCGCTGTTCC 60.951 60.000 0.00 0.00 0.00 3.62
921 987 0.249911 ACCTTGTCACTCCGCTGTTC 60.250 55.000 0.00 0.00 0.00 3.18
922 988 0.180406 AACCTTGTCACTCCGCTGTT 59.820 50.000 0.00 0.00 0.00 3.16
923 989 0.180406 AAACCTTGTCACTCCGCTGT 59.820 50.000 0.00 0.00 0.00 4.40
924 990 1.002468 CAAAACCTTGTCACTCCGCTG 60.002 52.381 0.00 0.00 0.00 5.18
925 991 1.308998 CAAAACCTTGTCACTCCGCT 58.691 50.000 0.00 0.00 0.00 5.52
926 992 0.317854 GCAAAACCTTGTCACTCCGC 60.318 55.000 0.00 0.00 34.79 5.54
927 993 1.021202 TGCAAAACCTTGTCACTCCG 58.979 50.000 0.00 0.00 34.79 4.63
928 994 3.364964 CGTATGCAAAACCTTGTCACTCC 60.365 47.826 0.00 0.00 34.79 3.85
929 995 3.496884 TCGTATGCAAAACCTTGTCACTC 59.503 43.478 0.00 0.00 34.79 3.51
930 996 3.472652 TCGTATGCAAAACCTTGTCACT 58.527 40.909 0.00 0.00 34.79 3.41
931 997 3.889196 TCGTATGCAAAACCTTGTCAC 57.111 42.857 0.00 0.00 34.79 3.67
932 998 4.576873 TCTTTCGTATGCAAAACCTTGTCA 59.423 37.500 0.00 0.00 34.79 3.58
933 999 5.103290 TCTTTCGTATGCAAAACCTTGTC 57.897 39.130 0.00 0.00 34.79 3.18
934 1000 4.578928 ACTCTTTCGTATGCAAAACCTTGT 59.421 37.500 0.00 0.00 34.79 3.16
935 1001 5.108385 ACTCTTTCGTATGCAAAACCTTG 57.892 39.130 0.00 0.00 35.49 3.61
936 1002 8.732746 ATATACTCTTTCGTATGCAAAACCTT 57.267 30.769 0.00 0.00 32.63 3.50
937 1003 9.998106 ATATATACTCTTTCGTATGCAAAACCT 57.002 29.630 0.00 0.00 32.63 3.50
939 1005 9.530129 GCATATATACTCTTTCGTATGCAAAAC 57.470 33.333 9.53 0.00 42.25 2.43
940 1006 9.267084 TGCATATATACTCTTTCGTATGCAAAA 57.733 29.630 13.53 0.00 46.44 2.44
941 1007 8.825667 TGCATATATACTCTTTCGTATGCAAA 57.174 30.769 13.53 0.00 46.44 3.68
943 1009 7.542130 CACTGCATATATACTCTTTCGTATGCA 59.458 37.037 14.70 14.70 46.92 3.96
944 1010 7.542477 ACACTGCATATATACTCTTTCGTATGC 59.458 37.037 7.91 7.91 42.72 3.14
945 1011 8.972262 ACACTGCATATATACTCTTTCGTATG 57.028 34.615 0.00 0.00 32.63 2.39
948 1014 9.245962 GTTTACACTGCATATATACTCTTTCGT 57.754 33.333 0.00 0.00 0.00 3.85
949 1015 8.417928 CGTTTACACTGCATATATACTCTTTCG 58.582 37.037 0.00 0.00 0.00 3.46
950 1016 9.459640 TCGTTTACACTGCATATATACTCTTTC 57.540 33.333 0.00 0.00 0.00 2.62
951 1017 9.464714 CTCGTTTACACTGCATATATACTCTTT 57.535 33.333 0.00 0.00 0.00 2.52
952 1018 8.082852 CCTCGTTTACACTGCATATATACTCTT 58.917 37.037 0.00 0.00 0.00 2.85
953 1019 7.447545 TCCTCGTTTACACTGCATATATACTCT 59.552 37.037 0.00 0.00 0.00 3.24
954 1020 7.591165 TCCTCGTTTACACTGCATATATACTC 58.409 38.462 0.00 0.00 0.00 2.59
955 1021 7.447545 TCTCCTCGTTTACACTGCATATATACT 59.552 37.037 0.00 0.00 0.00 2.12
956 1022 7.591165 TCTCCTCGTTTACACTGCATATATAC 58.409 38.462 0.00 0.00 0.00 1.47
968 1034 2.082231 CTCGGTCTCTCCTCGTTTACA 58.918 52.381 0.00 0.00 0.00 2.41
972 1038 0.614294 TCTCTCGGTCTCTCCTCGTT 59.386 55.000 0.00 0.00 0.00 3.85
1041 1113 0.618458 GGTTGTGCCACCTCTCCATA 59.382 55.000 0.00 0.00 37.17 2.74
1070 1142 4.789075 CGTCGTACAGCCGGTGGG 62.789 72.222 1.90 0.00 0.00 4.61
1120 1192 4.754667 GAGGTGGCCGGGTTCGAC 62.755 72.222 2.18 0.00 39.00 4.20
1133 1205 1.202330 CATGAAGGAGCAGAGGAGGT 58.798 55.000 0.00 0.00 0.00 3.85
1231 1310 7.223193 GCACACACAGGTATACACGATTTTATA 59.777 37.037 5.01 0.00 0.00 0.98
1232 1311 6.036735 GCACACACAGGTATACACGATTTTAT 59.963 38.462 5.01 0.00 0.00 1.40
1233 1312 5.349270 GCACACACAGGTATACACGATTTTA 59.651 40.000 5.01 0.00 0.00 1.52
1268 1356 0.955428 TTGCTGGCGCTCTTCGATTT 60.955 50.000 7.64 0.00 41.67 2.17
1369 1457 0.105709 TGATATCCAGCGAGACCCCA 60.106 55.000 0.00 0.00 0.00 4.96
1389 1477 2.754658 CGCCCAGGTAGGAGACGT 60.755 66.667 0.00 0.00 41.22 4.34
1432 1520 4.398549 TGAAACGCGGAAAGACATAAAG 57.601 40.909 12.47 0.00 0.00 1.85
1434 1522 4.250464 AGATGAAACGCGGAAAGACATAA 58.750 39.130 12.47 0.00 0.00 1.90
1443 1531 0.806868 ACGAGTAGATGAAACGCGGA 59.193 50.000 12.47 0.00 43.22 5.54
1455 1543 7.932335 ACTCACAAGGAAGATTATACGAGTAG 58.068 38.462 0.00 0.00 0.00 2.57
1483 1627 2.422597 CATGCCTCCGTTTGTTAGTCA 58.577 47.619 0.00 0.00 0.00 3.41
1583 1747 0.900647 CGGTGTCCTTCCTCCTCACT 60.901 60.000 0.00 0.00 0.00 3.41
1678 1842 2.920964 CGCGAGCGATGAATCCACG 61.921 63.158 12.58 0.00 42.83 4.94
1679 1843 2.923854 CGCGAGCGATGAATCCAC 59.076 61.111 12.58 0.00 42.83 4.02
1695 1859 3.705638 CATGATAGCGGCCGTGCG 61.706 66.667 28.70 0.27 40.67 5.34
1696 1860 3.349006 CCATGATAGCGGCCGTGC 61.349 66.667 28.70 11.32 0.00 5.34
1697 1861 1.956170 GTCCATGATAGCGGCCGTG 60.956 63.158 28.70 15.77 0.00 4.94
1698 1862 2.421739 GTCCATGATAGCGGCCGT 59.578 61.111 28.70 16.08 0.00 5.68
1699 1863 2.734723 CGTCCATGATAGCGGCCG 60.735 66.667 24.05 24.05 0.00 6.13
1700 1864 3.044305 GCGTCCATGATAGCGGCC 61.044 66.667 0.00 0.00 0.00 6.13
1701 1865 0.389817 TATGCGTCCATGATAGCGGC 60.390 55.000 0.00 0.00 32.85 6.53
1702 1866 2.078849 TTATGCGTCCATGATAGCGG 57.921 50.000 0.00 0.00 32.85 5.52
1703 1867 3.661678 CGTTTTATGCGTCCATGATAGCG 60.662 47.826 0.00 0.00 32.85 4.26
1704 1868 3.363970 CCGTTTTATGCGTCCATGATAGC 60.364 47.826 0.00 0.00 32.85 2.97
1705 1869 3.807622 ACCGTTTTATGCGTCCATGATAG 59.192 43.478 0.00 0.00 32.85 2.08
1756 1938 3.187700 GTGCTCGGTAGAATAACCACTG 58.812 50.000 0.00 0.00 39.71 3.66
1818 2000 9.772973 ATTTTGATAACCACTAGCACGAATATA 57.227 29.630 0.00 0.00 0.00 0.86
1881 2068 6.964908 ACGTGATGATACATGTTGAAACAAA 58.035 32.000 2.30 0.00 43.03 2.83
1926 5398 2.687700 TTTTGCGGGCATGCATTATT 57.312 40.000 21.36 0.00 45.78 1.40
1927 5399 2.687700 TTTTTGCGGGCATGCATTAT 57.312 40.000 21.36 0.00 45.78 1.28
1992 5464 4.443621 TGTGTCTTAATGTTTCACCGTGA 58.556 39.130 0.00 0.00 0.00 4.35
2030 5504 0.955905 AAGGCGTTACATTGGCGTTT 59.044 45.000 0.00 0.00 31.48 3.60
2087 5563 6.095860 TGGATGTGGTTGATTTGAGATTCATC 59.904 38.462 0.00 0.00 0.00 2.92
2110 5586 0.816825 CCCGAGCATGGATTCACTGG 60.817 60.000 0.00 0.00 0.00 4.00
2133 5609 2.767960 GGGACCAATAAACTAGGACGGA 59.232 50.000 0.00 0.00 0.00 4.69
2150 5626 5.523438 TTGACACAAATTACAAAGGGGAC 57.477 39.130 0.00 0.00 0.00 4.46
2151 5627 6.739331 ATTTGACACAAATTACAAAGGGGA 57.261 33.333 4.22 0.00 36.07 4.81
2152 5628 7.800155 AAATTTGACACAAATTACAAAGGGG 57.200 32.000 18.37 0.00 36.07 4.79
2191 5667 9.716507 GTCGACATGCATTAATATTTTGTTAGT 57.283 29.630 11.55 0.00 0.00 2.24
2192 5668 9.715123 TGTCGACATGCATTAATATTTTGTTAG 57.285 29.630 15.76 0.00 0.00 2.34
2195 5671 8.978564 TTTGTCGACATGCATTAATATTTTGT 57.021 26.923 20.80 0.00 0.00 2.83
2204 5680 9.592720 CGATATAATTTTTGTCGACATGCATTA 57.407 29.630 20.80 19.38 34.46 1.90
2205 5681 7.591057 CCGATATAATTTTTGTCGACATGCATT 59.409 33.333 20.80 17.98 34.46 3.56
2206 5682 7.077605 CCGATATAATTTTTGTCGACATGCAT 58.922 34.615 20.80 8.50 34.46 3.96
2207 5683 6.037720 ACCGATATAATTTTTGTCGACATGCA 59.962 34.615 20.80 6.30 34.46 3.96
2208 5684 6.356977 CACCGATATAATTTTTGTCGACATGC 59.643 38.462 20.80 0.00 34.46 4.06
2209 5685 6.850823 CCACCGATATAATTTTTGTCGACATG 59.149 38.462 20.80 8.97 34.46 3.21
2210 5686 6.764085 TCCACCGATATAATTTTTGTCGACAT 59.236 34.615 20.80 6.45 34.46 3.06
2211 5687 6.107343 TCCACCGATATAATTTTTGTCGACA 58.893 36.000 15.76 15.76 34.46 4.35
2212 5688 6.592798 TCCACCGATATAATTTTTGTCGAC 57.407 37.500 9.11 9.11 34.46 4.20
2213 5689 7.496263 TGAATCCACCGATATAATTTTTGTCGA 59.504 33.333 7.39 0.00 34.46 4.20
2214 5690 7.635423 TGAATCCACCGATATAATTTTTGTCG 58.365 34.615 0.30 0.30 0.00 4.35
2227 5703 9.793259 ACTATGTTTAAATATGAATCCACCGAT 57.207 29.630 7.63 0.00 0.00 4.18
2228 5704 9.621629 AACTATGTTTAAATATGAATCCACCGA 57.378 29.630 7.63 0.00 0.00 4.69
2269 5745 9.053840 ACAAAATGTTCATGCATGTCATAAAAA 57.946 25.926 26.70 13.06 33.19 1.94
2270 5746 8.604640 ACAAAATGTTCATGCATGTCATAAAA 57.395 26.923 26.70 13.36 33.19 1.52
2271 5747 9.702494 TTACAAAATGTTCATGCATGTCATAAA 57.298 25.926 26.70 14.33 33.19 1.40
2272 5748 9.356433 CTTACAAAATGTTCATGCATGTCATAA 57.644 29.630 26.70 19.61 33.19 1.90
2273 5749 8.522003 ACTTACAAAATGTTCATGCATGTCATA 58.478 29.630 26.70 16.11 33.19 2.15
2274 5750 7.380536 ACTTACAAAATGTTCATGCATGTCAT 58.619 30.769 25.43 24.28 35.31 3.06
2275 5751 6.747125 ACTTACAAAATGTTCATGCATGTCA 58.253 32.000 25.43 23.31 0.00 3.58
2276 5752 7.642071 AACTTACAAAATGTTCATGCATGTC 57.358 32.000 25.43 19.05 0.00 3.06
2277 5753 9.539825 TTTAACTTACAAAATGTTCATGCATGT 57.460 25.926 25.43 7.78 0.00 3.21
2307 5783 9.512588 TTGTATTTTATGCCAAATTTTGACCAT 57.487 25.926 10.72 13.39 0.00 3.55
2309 5785 9.771915 CATTGTATTTTATGCCAAATTTTGACC 57.228 29.630 10.72 2.35 0.00 4.02
2310 5786 9.771915 CCATTGTATTTTATGCCAAATTTTGAC 57.228 29.630 10.72 0.00 0.00 3.18
2312 5788 8.189460 CCCCATTGTATTTTATGCCAAATTTTG 58.811 33.333 1.99 1.99 0.00 2.44
2314 5790 7.555914 GTCCCCATTGTATTTTATGCCAAATTT 59.444 33.333 0.00 0.00 0.00 1.82
2315 5791 7.053498 GTCCCCATTGTATTTTATGCCAAATT 58.947 34.615 0.00 0.00 0.00 1.82
2316 5792 6.409120 GGTCCCCATTGTATTTTATGCCAAAT 60.409 38.462 0.00 0.00 0.00 2.32
2318 5794 4.407296 GGTCCCCATTGTATTTTATGCCAA 59.593 41.667 0.00 0.00 0.00 4.52
2319 5795 3.964031 GGTCCCCATTGTATTTTATGCCA 59.036 43.478 0.00 0.00 0.00 4.92
2320 5796 4.223144 AGGTCCCCATTGTATTTTATGCC 58.777 43.478 0.00 0.00 0.00 4.40
2321 5797 8.644374 TTATAGGTCCCCATTGTATTTTATGC 57.356 34.615 0.00 0.00 0.00 3.14
2325 5801 7.423341 TGGTTTATAGGTCCCCATTGTATTTT 58.577 34.615 0.00 0.00 0.00 1.82
2326 5802 6.987557 TGGTTTATAGGTCCCCATTGTATTT 58.012 36.000 0.00 0.00 0.00 1.40
2327 5803 6.411554 CCTGGTTTATAGGTCCCCATTGTATT 60.412 42.308 0.00 0.00 0.00 1.89
2328 5804 5.074515 CCTGGTTTATAGGTCCCCATTGTAT 59.925 44.000 0.00 0.00 0.00 2.29
2329 5805 4.414182 CCTGGTTTATAGGTCCCCATTGTA 59.586 45.833 0.00 0.00 0.00 2.41
2330 5806 3.204382 CCTGGTTTATAGGTCCCCATTGT 59.796 47.826 0.00 0.00 0.00 2.71
2331 5807 3.461831 TCCTGGTTTATAGGTCCCCATTG 59.538 47.826 0.00 0.00 36.67 2.82
2332 5808 3.462205 GTCCTGGTTTATAGGTCCCCATT 59.538 47.826 0.00 0.00 36.67 3.16
2333 5809 3.053826 GTCCTGGTTTATAGGTCCCCAT 58.946 50.000 0.00 0.00 36.67 4.00
2334 5810 2.484602 GTCCTGGTTTATAGGTCCCCA 58.515 52.381 0.00 0.00 36.67 4.96
2335 5811 1.415289 CGTCCTGGTTTATAGGTCCCC 59.585 57.143 0.00 0.00 36.67 4.81
2336 5812 1.415289 CCGTCCTGGTTTATAGGTCCC 59.585 57.143 0.00 0.00 36.67 4.46
2337 5813 2.364647 CTCCGTCCTGGTTTATAGGTCC 59.635 54.545 0.00 0.00 39.52 4.46
2338 5814 2.364647 CCTCCGTCCTGGTTTATAGGTC 59.635 54.545 0.00 0.00 39.52 3.85
2339 5815 2.292719 ACCTCCGTCCTGGTTTATAGGT 60.293 50.000 0.00 0.00 35.62 3.08
2340 5816 2.395619 ACCTCCGTCCTGGTTTATAGG 58.604 52.381 0.00 0.00 39.52 2.57
2341 5817 4.213513 ACTACCTCCGTCCTGGTTTATAG 58.786 47.826 0.00 0.00 39.52 1.31
2342 5818 4.255510 ACTACCTCCGTCCTGGTTTATA 57.744 45.455 0.00 0.00 39.52 0.98
2343 5819 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
2344 5820 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
2345 5821 2.610438 TACTACCTCCGTCCTGGTTT 57.390 50.000 0.00 0.00 39.52 3.27
2346 5822 2.024655 TCATACTACCTCCGTCCTGGTT 60.025 50.000 0.00 0.00 39.52 3.67
2347 5823 1.567649 TCATACTACCTCCGTCCTGGT 59.432 52.381 0.00 0.00 39.52 4.00
2348 5824 2.359981 TCATACTACCTCCGTCCTGG 57.640 55.000 0.00 0.00 40.09 4.45
2349 5825 3.487372 TCATCATACTACCTCCGTCCTG 58.513 50.000 0.00 0.00 0.00 3.86
2350 5826 3.878237 TCATCATACTACCTCCGTCCT 57.122 47.619 0.00 0.00 0.00 3.85
2351 5827 3.367498 GCATCATCATACTACCTCCGTCC 60.367 52.174 0.00 0.00 0.00 4.79
2352 5828 3.255888 TGCATCATCATACTACCTCCGTC 59.744 47.826 0.00 0.00 0.00 4.79
2353 5829 3.230976 TGCATCATCATACTACCTCCGT 58.769 45.455 0.00 0.00 0.00 4.69
2354 5830 3.942130 TGCATCATCATACTACCTCCG 57.058 47.619 0.00 0.00 0.00 4.63
2355 5831 5.798132 TCATTGCATCATCATACTACCTCC 58.202 41.667 0.00 0.00 0.00 4.30
2356 5832 7.918536 ATTCATTGCATCATCATACTACCTC 57.081 36.000 0.00 0.00 0.00 3.85
2357 5833 9.392259 CATATTCATTGCATCATCATACTACCT 57.608 33.333 0.00 0.00 0.00 3.08
2358 5834 9.387257 TCATATTCATTGCATCATCATACTACC 57.613 33.333 0.00 0.00 0.00 3.18
2361 5837 9.516546 ACTTCATATTCATTGCATCATCATACT 57.483 29.630 0.00 0.00 0.00 2.12
2365 5841 9.292195 ACATACTTCATATTCATTGCATCATCA 57.708 29.630 0.00 0.00 0.00 3.07
2447 5950 3.106738 CTGATGGTCCAGGATTGGC 57.893 57.895 0.00 0.00 44.63 4.52
2480 6303 0.617413 CCAGACTCCATGCTGAGGTT 59.383 55.000 4.31 0.00 36.66 3.50
2515 6338 3.343421 AGTTTTCCACGCGACGCC 61.343 61.111 15.93 0.00 0.00 5.68
2570 6393 3.065648 TGTTTTTACACCGCACTCCTTTC 59.934 43.478 0.00 0.00 0.00 2.62
2597 6423 3.244318 TGAGTAGGTCAGCATGCCATATG 60.244 47.826 15.66 6.16 35.20 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.