Multiple sequence alignment - TraesCS5D01G376900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G376900 chr5D 100.000 2360 0 0 1 2360 449151043 449153402 0.000000e+00 4359
1 TraesCS5D01G376900 chr5D 99.055 2117 16 3 248 2360 240135571 240133455 0.000000e+00 3795
2 TraesCS5D01G376900 chr5D 98.016 2117 32 9 248 2360 6203411 6205521 0.000000e+00 3668
3 TraesCS5D01G376900 chr1D 99.008 2117 17 3 248 2360 483916737 483918853 0.000000e+00 3790
4 TraesCS5D01G376900 chr1D 99.054 2114 15 4 249 2360 254495873 254493763 0.000000e+00 3788
5 TraesCS5D01G376900 chr1D 98.394 249 4 0 1 249 254534276 254534524 2.780000e-119 438
6 TraesCS5D01G376900 chr3D 98.866 2117 19 4 248 2360 21901955 21899840 0.000000e+00 3771
7 TraesCS5D01G376900 chr3B 98.488 2116 28 4 248 2360 201510993 201508879 0.000000e+00 3727
8 TraesCS5D01G376900 chr3B 99.190 247 2 0 3 249 201562700 201562454 1.660000e-121 446
9 TraesCS5D01G376900 chr3B 86.562 320 25 6 2044 2360 252673882 252674186 1.040000e-88 337
10 TraesCS5D01G376900 chr3B 98.039 153 3 0 1915 2067 820706436 820706588 1.390000e-67 267
11 TraesCS5D01G376900 chr2D 96.595 2144 39 7 248 2360 334230358 334228218 0.000000e+00 3524
12 TraesCS5D01G376900 chr2D 99.598 249 1 0 1 249 630267307 630267555 2.760000e-124 455
13 TraesCS5D01G376900 chr2D 99.197 249 2 0 1 249 272803578 272803330 1.290000e-122 449
14 TraesCS5D01G376900 chr2D 97.992 249 5 0 1 249 196965659 196965411 1.300000e-117 433
15 TraesCS5D01G376900 chr4D 96.643 2115 56 8 248 2360 19914363 19912262 0.000000e+00 3498
16 TraesCS5D01G376900 chr2B 98.683 1291 15 2 531 1819 474898529 474899819 0.000000e+00 2289
17 TraesCS5D01G376900 chr2A 96.790 623 10 3 1738 2359 42773056 42773669 0.000000e+00 1031
18 TraesCS5D01G376900 chr7A 97.632 380 8 1 248 627 264091543 264091921 0.000000e+00 651
19 TraesCS5D01G376900 chr7A 98.964 193 2 0 1786 1978 357646664 357646856 1.740000e-91 346
20 TraesCS5D01G376900 chr7A 98.058 103 2 0 2029 2131 428587570 428587672 1.860000e-41 180
21 TraesCS5D01G376900 chrUn 99.598 249 1 0 1 249 351213309 351213061 2.760000e-124 455
22 TraesCS5D01G376900 chrUn 99.190 247 2 0 3 249 416132837 416132591 1.660000e-121 446
23 TraesCS5D01G376900 chr7B 99.598 249 1 0 1 249 662735593 662735841 2.760000e-124 455
24 TraesCS5D01G376900 chr1B 99.197 249 2 0 1 249 633730791 633730543 1.290000e-122 449


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G376900 chr5D 449151043 449153402 2359 False 4359 4359 100.000 1 2360 1 chr5D.!!$F2 2359
1 TraesCS5D01G376900 chr5D 240133455 240135571 2116 True 3795 3795 99.055 248 2360 1 chr5D.!!$R1 2112
2 TraesCS5D01G376900 chr5D 6203411 6205521 2110 False 3668 3668 98.016 248 2360 1 chr5D.!!$F1 2112
3 TraesCS5D01G376900 chr1D 483916737 483918853 2116 False 3790 3790 99.008 248 2360 1 chr1D.!!$F2 2112
4 TraesCS5D01G376900 chr1D 254493763 254495873 2110 True 3788 3788 99.054 249 2360 1 chr1D.!!$R1 2111
5 TraesCS5D01G376900 chr3D 21899840 21901955 2115 True 3771 3771 98.866 248 2360 1 chr3D.!!$R1 2112
6 TraesCS5D01G376900 chr3B 201508879 201510993 2114 True 3727 3727 98.488 248 2360 1 chr3B.!!$R1 2112
7 TraesCS5D01G376900 chr2D 334228218 334230358 2140 True 3524 3524 96.595 248 2360 1 chr2D.!!$R3 2112
8 TraesCS5D01G376900 chr4D 19912262 19914363 2101 True 3498 3498 96.643 248 2360 1 chr4D.!!$R1 2112
9 TraesCS5D01G376900 chr2B 474898529 474899819 1290 False 2289 2289 98.683 531 1819 1 chr2B.!!$F1 1288
10 TraesCS5D01G376900 chr2A 42773056 42773669 613 False 1031 1031 96.790 1738 2359 1 chr2A.!!$F1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.042581 TGGACCCTCCATAGCAGTCA 59.957 55.0 0.0 0.0 42.67 3.41 F
328 329 1.263776 GTGCGACTCGTTCAGATCAG 58.736 55.0 0.0 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1029 1037 1.210870 TTTTTGTTCGTCGTCTCCGG 58.789 50.000 0.00 0.0 33.95 5.14 R
2092 2101 8.315482 AGAAAAACTACTTCTTCTGGATCCTAC 58.685 37.037 14.23 0.0 28.46 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.573968 CCTCCTTTTGGGAATAACAATAGAG 57.426 40.000 0.00 0.00 44.58 2.43
27 28 6.547510 CCTCCTTTTGGGAATAACAATAGAGG 59.452 42.308 0.00 0.00 44.58 3.69
28 29 7.039722 TCCTTTTGGGAATAACAATAGAGGT 57.960 36.000 0.00 0.00 41.91 3.85
29 30 8.165267 TCCTTTTGGGAATAACAATAGAGGTA 57.835 34.615 0.00 0.00 41.91 3.08
30 31 8.050930 TCCTTTTGGGAATAACAATAGAGGTAC 58.949 37.037 0.00 0.00 41.91 3.34
31 32 8.053355 CCTTTTGGGAATAACAATAGAGGTACT 58.947 37.037 0.00 0.00 38.69 2.73
46 47 4.612264 AGGTACTCGTAATTGTGTGGTT 57.388 40.909 0.00 0.00 0.00 3.67
47 48 5.726980 AGGTACTCGTAATTGTGTGGTTA 57.273 39.130 0.00 0.00 0.00 2.85
48 49 5.717119 AGGTACTCGTAATTGTGTGGTTAG 58.283 41.667 0.00 0.00 0.00 2.34
49 50 5.477984 AGGTACTCGTAATTGTGTGGTTAGA 59.522 40.000 0.00 0.00 0.00 2.10
50 51 6.015180 AGGTACTCGTAATTGTGTGGTTAGAA 60.015 38.462 0.00 0.00 0.00 2.10
51 52 6.646240 GGTACTCGTAATTGTGTGGTTAGAAA 59.354 38.462 0.00 0.00 0.00 2.52
52 53 6.780706 ACTCGTAATTGTGTGGTTAGAAAG 57.219 37.500 0.00 0.00 0.00 2.62
53 54 6.518493 ACTCGTAATTGTGTGGTTAGAAAGA 58.482 36.000 0.00 0.00 0.00 2.52
54 55 6.645415 ACTCGTAATTGTGTGGTTAGAAAGAG 59.355 38.462 0.00 0.00 0.00 2.85
55 56 6.751157 TCGTAATTGTGTGGTTAGAAAGAGA 58.249 36.000 0.00 0.00 0.00 3.10
56 57 7.211573 TCGTAATTGTGTGGTTAGAAAGAGAA 58.788 34.615 0.00 0.00 0.00 2.87
57 58 7.711772 TCGTAATTGTGTGGTTAGAAAGAGAAA 59.288 33.333 0.00 0.00 0.00 2.52
58 59 8.504005 CGTAATTGTGTGGTTAGAAAGAGAAAT 58.496 33.333 0.00 0.00 0.00 2.17
62 63 9.965902 ATTGTGTGGTTAGAAAGAGAAATATCT 57.034 29.630 0.00 0.00 39.10 1.98
63 64 8.777865 TGTGTGGTTAGAAAGAGAAATATCTG 57.222 34.615 0.00 0.00 35.54 2.90
64 65 7.334421 TGTGTGGTTAGAAAGAGAAATATCTGC 59.666 37.037 0.00 0.00 35.54 4.26
65 66 6.535150 TGTGGTTAGAAAGAGAAATATCTGCG 59.465 38.462 0.00 0.00 35.54 5.18
66 67 6.535508 GTGGTTAGAAAGAGAAATATCTGCGT 59.464 38.462 0.00 0.00 35.54 5.24
67 68 6.757010 TGGTTAGAAAGAGAAATATCTGCGTC 59.243 38.462 0.00 0.00 35.54 5.19
68 69 6.074782 GGTTAGAAAGAGAAATATCTGCGTCG 60.075 42.308 0.00 0.00 35.54 5.12
69 70 5.250235 AGAAAGAGAAATATCTGCGTCGA 57.750 39.130 0.00 0.00 35.54 4.20
70 71 5.837437 AGAAAGAGAAATATCTGCGTCGAT 58.163 37.500 0.00 0.00 35.54 3.59
71 72 6.971602 AGAAAGAGAAATATCTGCGTCGATA 58.028 36.000 0.00 0.00 35.54 2.92
72 73 6.858993 AGAAAGAGAAATATCTGCGTCGATAC 59.141 38.462 0.00 0.00 35.54 2.24
73 74 5.690997 AGAGAAATATCTGCGTCGATACA 57.309 39.130 0.00 0.00 35.54 2.29
74 75 6.073327 AGAGAAATATCTGCGTCGATACAA 57.927 37.500 0.00 0.00 35.54 2.41
75 76 5.915758 AGAGAAATATCTGCGTCGATACAAC 59.084 40.000 0.00 0.00 35.54 3.32
76 77 5.588240 AGAAATATCTGCGTCGATACAACA 58.412 37.500 0.00 0.00 33.59 3.33
77 78 6.040247 AGAAATATCTGCGTCGATACAACAA 58.960 36.000 0.00 0.00 33.59 2.83
78 79 5.637104 AATATCTGCGTCGATACAACAAC 57.363 39.130 0.00 0.00 0.00 3.32
79 80 1.333115 TCTGCGTCGATACAACAACG 58.667 50.000 0.00 0.00 38.13 4.10
80 81 1.057636 CTGCGTCGATACAACAACGT 58.942 50.000 0.00 0.00 37.45 3.99
81 82 2.095819 TCTGCGTCGATACAACAACGTA 60.096 45.455 0.00 0.00 37.45 3.57
82 83 2.850060 CTGCGTCGATACAACAACGTAT 59.150 45.455 0.00 0.00 37.45 3.06
83 84 3.244156 TGCGTCGATACAACAACGTATT 58.756 40.909 0.00 0.00 37.45 1.89
84 85 3.059702 TGCGTCGATACAACAACGTATTG 59.940 43.478 10.16 10.16 41.98 1.90
85 86 3.540744 GCGTCGATACAACAACGTATTGG 60.541 47.826 14.87 0.00 40.42 3.16
86 87 3.609373 CGTCGATACAACAACGTATTGGT 59.391 43.478 14.87 5.29 40.42 3.67
87 88 4.259135 CGTCGATACAACAACGTATTGGTC 60.259 45.833 14.87 11.44 40.42 4.02
88 89 4.032104 GTCGATACAACAACGTATTGGTCC 59.968 45.833 14.87 4.62 40.42 4.46
89 90 4.082081 TCGATACAACAACGTATTGGTCCT 60.082 41.667 14.87 0.00 40.42 3.85
90 91 4.032445 CGATACAACAACGTATTGGTCCTG 59.968 45.833 14.87 0.00 40.42 3.86
91 92 3.478857 ACAACAACGTATTGGTCCTGA 57.521 42.857 14.87 0.00 40.42 3.86
92 93 3.811083 ACAACAACGTATTGGTCCTGAA 58.189 40.909 14.87 0.00 40.42 3.02
93 94 4.394729 ACAACAACGTATTGGTCCTGAAT 58.605 39.130 14.87 0.00 40.42 2.57
94 95 5.553123 ACAACAACGTATTGGTCCTGAATA 58.447 37.500 14.87 0.00 40.42 1.75
95 96 6.177610 ACAACAACGTATTGGTCCTGAATAT 58.822 36.000 14.87 0.00 40.42 1.28
96 97 6.093495 ACAACAACGTATTGGTCCTGAATATG 59.907 38.462 14.87 0.00 40.42 1.78
97 98 4.574828 ACAACGTATTGGTCCTGAATATGC 59.425 41.667 0.00 0.00 40.42 3.14
98 99 4.689612 ACGTATTGGTCCTGAATATGCT 57.310 40.909 0.00 0.00 0.00 3.79
99 100 4.380531 ACGTATTGGTCCTGAATATGCTG 58.619 43.478 0.00 0.00 0.00 4.41
100 101 3.748048 CGTATTGGTCCTGAATATGCTGG 59.252 47.826 0.00 0.00 0.00 4.85
101 102 2.057137 TTGGTCCTGAATATGCTGGC 57.943 50.000 1.55 0.00 0.00 4.85
102 103 0.183492 TGGTCCTGAATATGCTGGCC 59.817 55.000 0.00 0.00 0.00 5.36
103 104 0.538287 GGTCCTGAATATGCTGGCCC 60.538 60.000 0.00 0.00 0.00 5.80
104 105 0.538287 GTCCTGAATATGCTGGCCCC 60.538 60.000 0.00 0.00 0.00 5.80
105 106 1.228675 CCTGAATATGCTGGCCCCC 60.229 63.158 0.00 0.00 0.00 5.40
106 107 1.723128 CCTGAATATGCTGGCCCCCT 61.723 60.000 0.00 0.00 0.00 4.79
107 108 0.538977 CTGAATATGCTGGCCCCCTG 60.539 60.000 0.00 0.00 0.00 4.45
108 109 1.228675 GAATATGCTGGCCCCCTGG 60.229 63.158 0.00 0.00 0.00 4.45
119 120 3.983420 CCCCTGGGCCTGCTTCAA 61.983 66.667 7.39 0.00 0.00 2.69
120 121 2.362120 CCCTGGGCCTGCTTCAAG 60.362 66.667 4.53 0.00 0.00 3.02
121 122 3.066814 CCTGGGCCTGCTTCAAGC 61.067 66.667 1.04 1.04 42.82 4.01
122 123 2.035312 CTGGGCCTGCTTCAAGCT 59.965 61.111 11.57 0.00 42.97 3.74
123 124 1.300963 CTGGGCCTGCTTCAAGCTA 59.699 57.895 11.57 0.00 42.97 3.32
124 125 0.106819 CTGGGCCTGCTTCAAGCTAT 60.107 55.000 11.57 0.00 42.97 2.97
125 126 1.141657 CTGGGCCTGCTTCAAGCTATA 59.858 52.381 11.57 0.00 42.97 1.31
126 127 1.141657 TGGGCCTGCTTCAAGCTATAG 59.858 52.381 11.57 0.00 42.97 1.31
127 128 1.233919 GGCCTGCTTCAAGCTATAGC 58.766 55.000 17.33 17.33 42.97 2.97
128 129 1.475751 GGCCTGCTTCAAGCTATAGCA 60.476 52.381 26.07 14.34 42.97 3.49
133 134 3.736720 TGCTTCAAGCTATAGCAGATGG 58.263 45.455 26.07 17.42 42.97 3.51
134 135 3.072944 GCTTCAAGCTATAGCAGATGGG 58.927 50.000 26.07 16.57 45.16 4.00
135 136 3.244353 GCTTCAAGCTATAGCAGATGGGA 60.244 47.826 26.07 10.86 45.16 4.37
136 137 4.314121 CTTCAAGCTATAGCAGATGGGAC 58.686 47.826 26.07 0.00 45.16 4.46
137 138 3.581101 TCAAGCTATAGCAGATGGGACT 58.419 45.455 26.07 0.00 45.16 3.85
138 139 4.740902 TCAAGCTATAGCAGATGGGACTA 58.259 43.478 26.07 3.96 45.16 2.59
139 140 5.147767 TCAAGCTATAGCAGATGGGACTAA 58.852 41.667 26.07 3.33 45.16 2.24
140 141 5.244851 TCAAGCTATAGCAGATGGGACTAAG 59.755 44.000 26.07 0.20 45.16 2.18
141 142 3.513515 AGCTATAGCAGATGGGACTAAGC 59.486 47.826 26.07 0.00 45.16 3.09
142 143 3.513515 GCTATAGCAGATGGGACTAAGCT 59.486 47.826 20.01 0.00 41.59 3.74
143 144 4.707448 GCTATAGCAGATGGGACTAAGCTA 59.293 45.833 20.01 0.00 41.59 3.32
144 145 5.393678 GCTATAGCAGATGGGACTAAGCTAC 60.394 48.000 20.01 0.00 41.59 3.58
145 146 3.039252 AGCAGATGGGACTAAGCTACT 57.961 47.619 0.00 0.00 0.00 2.57
146 147 3.379452 AGCAGATGGGACTAAGCTACTT 58.621 45.455 0.00 0.00 0.00 2.24
147 148 3.777522 AGCAGATGGGACTAAGCTACTTT 59.222 43.478 0.00 0.00 0.00 2.66
148 149 4.226168 AGCAGATGGGACTAAGCTACTTTT 59.774 41.667 0.00 0.00 0.00 2.27
149 150 4.944317 GCAGATGGGACTAAGCTACTTTTT 59.056 41.667 0.00 0.00 0.00 1.94
150 151 6.070194 AGCAGATGGGACTAAGCTACTTTTTA 60.070 38.462 0.00 0.00 0.00 1.52
151 152 6.598064 GCAGATGGGACTAAGCTACTTTTTAA 59.402 38.462 0.00 0.00 0.00 1.52
152 153 7.120726 GCAGATGGGACTAAGCTACTTTTTAAA 59.879 37.037 0.00 0.00 0.00 1.52
153 154 8.669243 CAGATGGGACTAAGCTACTTTTTAAAG 58.331 37.037 0.80 0.80 41.73 1.85
154 155 8.603304 AGATGGGACTAAGCTACTTTTTAAAGA 58.397 33.333 9.09 0.00 39.31 2.52
155 156 9.227777 GATGGGACTAAGCTACTTTTTAAAGAA 57.772 33.333 9.09 0.00 39.31 2.52
156 157 8.617290 TGGGACTAAGCTACTTTTTAAAGAAG 57.383 34.615 9.09 7.94 39.31 2.85
157 158 8.434392 TGGGACTAAGCTACTTTTTAAAGAAGA 58.566 33.333 9.09 0.00 39.31 2.87
158 159 9.451002 GGGACTAAGCTACTTTTTAAAGAAGAT 57.549 33.333 9.09 0.00 39.31 2.40
166 167 9.723447 GCTACTTTTTAAAGAAGATATTCTGCC 57.277 33.333 2.78 0.00 39.31 4.85
170 171 9.741647 CTTTTTAAAGAAGATATTCTGCCATCC 57.258 33.333 2.78 0.00 38.28 3.51
171 172 7.823745 TTTAAAGAAGATATTCTGCCATCCC 57.176 36.000 2.78 0.00 0.00 3.85
172 173 3.692257 AGAAGATATTCTGCCATCCCG 57.308 47.619 0.80 0.00 0.00 5.14
173 174 3.242867 AGAAGATATTCTGCCATCCCGA 58.757 45.455 0.80 0.00 0.00 5.14
174 175 3.260380 AGAAGATATTCTGCCATCCCGAG 59.740 47.826 0.80 0.00 0.00 4.63
175 176 1.905215 AGATATTCTGCCATCCCGAGG 59.095 52.381 0.00 0.00 0.00 4.63
176 177 1.902508 GATATTCTGCCATCCCGAGGA 59.097 52.381 0.00 0.00 35.55 3.71
177 178 1.342074 TATTCTGCCATCCCGAGGAG 58.658 55.000 0.00 0.00 34.05 3.69
178 179 0.399091 ATTCTGCCATCCCGAGGAGA 60.399 55.000 0.00 0.00 34.05 3.71
179 180 0.399091 TTCTGCCATCCCGAGGAGAT 60.399 55.000 0.00 0.00 34.05 2.75
180 181 0.482887 TCTGCCATCCCGAGGAGATA 59.517 55.000 0.00 0.00 34.05 1.98
181 182 1.077828 TCTGCCATCCCGAGGAGATAT 59.922 52.381 0.00 0.00 34.05 1.63
182 183 1.905215 CTGCCATCCCGAGGAGATATT 59.095 52.381 0.00 0.00 34.05 1.28
183 184 2.304180 CTGCCATCCCGAGGAGATATTT 59.696 50.000 0.00 0.00 34.05 1.40
184 185 2.303022 TGCCATCCCGAGGAGATATTTC 59.697 50.000 0.00 0.00 34.05 2.17
185 186 2.569404 GCCATCCCGAGGAGATATTTCT 59.431 50.000 0.00 0.00 34.05 2.52
186 187 3.008485 GCCATCCCGAGGAGATATTTCTT 59.992 47.826 0.00 0.00 34.05 2.52
187 188 4.505742 GCCATCCCGAGGAGATATTTCTTT 60.506 45.833 0.00 0.00 34.05 2.52
188 189 5.280011 GCCATCCCGAGGAGATATTTCTTTA 60.280 44.000 0.00 0.00 34.05 1.85
189 190 6.577239 GCCATCCCGAGGAGATATTTCTTTAT 60.577 42.308 0.00 0.00 34.05 1.40
190 191 7.398024 CCATCCCGAGGAGATATTTCTTTATT 58.602 38.462 0.00 0.00 34.05 1.40
191 192 7.885399 CCATCCCGAGGAGATATTTCTTTATTT 59.115 37.037 0.00 0.00 34.05 1.40
192 193 9.944376 CATCCCGAGGAGATATTTCTTTATTTA 57.056 33.333 0.00 0.00 34.05 1.40
194 195 8.095169 TCCCGAGGAGATATTTCTTTATTTAGC 58.905 37.037 0.00 0.00 30.30 3.09
195 196 7.878127 CCCGAGGAGATATTTCTTTATTTAGCA 59.122 37.037 0.00 0.00 30.30 3.49
196 197 9.442047 CCGAGGAGATATTTCTTTATTTAGCAT 57.558 33.333 0.00 0.00 30.30 3.79
203 204 9.914131 GATATTTCTTTATTTAGCATTGGACCC 57.086 33.333 0.00 0.00 0.00 4.46
204 205 7.978099 ATTTCTTTATTTAGCATTGGACCCT 57.022 32.000 0.00 0.00 0.00 4.34
205 206 7.404671 TTTCTTTATTTAGCATTGGACCCTC 57.595 36.000 0.00 0.00 0.00 4.30
206 207 5.445964 TCTTTATTTAGCATTGGACCCTCC 58.554 41.667 0.00 0.00 36.96 4.30
207 208 4.871871 TTATTTAGCATTGGACCCTCCA 57.128 40.909 0.00 0.00 46.61 3.86
215 216 2.916355 TGGACCCTCCATAGCAGTC 58.084 57.895 0.00 0.00 42.67 3.51
216 217 0.042581 TGGACCCTCCATAGCAGTCA 59.957 55.000 0.00 0.00 42.67 3.41
217 218 1.344393 TGGACCCTCCATAGCAGTCAT 60.344 52.381 0.00 0.00 42.67 3.06
218 219 2.090775 TGGACCCTCCATAGCAGTCATA 60.091 50.000 0.00 0.00 42.67 2.15
219 220 3.177228 GGACCCTCCATAGCAGTCATAT 58.823 50.000 0.00 0.00 36.28 1.78
220 221 3.196685 GGACCCTCCATAGCAGTCATATC 59.803 52.174 0.00 0.00 36.28 1.63
221 222 3.834813 GACCCTCCATAGCAGTCATATCA 59.165 47.826 0.00 0.00 0.00 2.15
222 223 3.837146 ACCCTCCATAGCAGTCATATCAG 59.163 47.826 0.00 0.00 0.00 2.90
223 224 3.837146 CCCTCCATAGCAGTCATATCAGT 59.163 47.826 0.00 0.00 0.00 3.41
224 225 4.285517 CCCTCCATAGCAGTCATATCAGTT 59.714 45.833 0.00 0.00 0.00 3.16
225 226 5.221803 CCCTCCATAGCAGTCATATCAGTTT 60.222 44.000 0.00 0.00 0.00 2.66
226 227 6.294473 CCTCCATAGCAGTCATATCAGTTTT 58.706 40.000 0.00 0.00 0.00 2.43
227 228 7.445121 CCTCCATAGCAGTCATATCAGTTTTA 58.555 38.462 0.00 0.00 0.00 1.52
228 229 8.099537 CCTCCATAGCAGTCATATCAGTTTTAT 58.900 37.037 0.00 0.00 0.00 1.40
229 230 9.499479 CTCCATAGCAGTCATATCAGTTTTATT 57.501 33.333 0.00 0.00 0.00 1.40
328 329 1.263776 GTGCGACTCGTTCAGATCAG 58.736 55.000 0.00 0.00 0.00 2.90
344 345 8.567948 GTTCAGATCAGGACTTCAAACAAATAA 58.432 33.333 0.00 0.00 0.00 1.40
794 800 6.943718 AGAAACGATGGAACCCACTATTTTTA 59.056 34.615 0.00 0.00 35.80 1.52
1322 1330 9.851686 AGTAGCTGTATCAAATCCAAATAATCA 57.148 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.039722 ACCTCTATTGTTATTCCCAAAAGGA 57.960 36.000 0.00 0.00 45.68 3.36
5 6 8.053355 AGTACCTCTATTGTTATTCCCAAAAGG 58.947 37.037 0.00 0.00 0.00 3.11
6 7 9.110502 GAGTACCTCTATTGTTATTCCCAAAAG 57.889 37.037 0.00 0.00 0.00 2.27
7 8 7.767198 CGAGTACCTCTATTGTTATTCCCAAAA 59.233 37.037 0.00 0.00 0.00 2.44
8 9 7.093201 ACGAGTACCTCTATTGTTATTCCCAAA 60.093 37.037 0.00 0.00 0.00 3.28
9 10 6.381994 ACGAGTACCTCTATTGTTATTCCCAA 59.618 38.462 0.00 0.00 0.00 4.12
10 11 5.895534 ACGAGTACCTCTATTGTTATTCCCA 59.104 40.000 0.00 0.00 0.00 4.37
11 12 6.402456 ACGAGTACCTCTATTGTTATTCCC 57.598 41.667 0.00 0.00 0.00 3.97
12 13 9.978044 AATTACGAGTACCTCTATTGTTATTCC 57.022 33.333 0.00 0.00 0.00 3.01
15 16 9.745880 CACAATTACGAGTACCTCTATTGTTAT 57.254 33.333 7.24 0.00 35.09 1.89
16 17 8.742777 ACACAATTACGAGTACCTCTATTGTTA 58.257 33.333 7.24 0.00 35.09 2.41
17 18 7.544566 CACACAATTACGAGTACCTCTATTGTT 59.455 37.037 7.24 0.59 35.09 2.83
18 19 7.033791 CACACAATTACGAGTACCTCTATTGT 58.966 38.462 0.00 0.00 36.30 2.71
19 20 6.475727 CCACACAATTACGAGTACCTCTATTG 59.524 42.308 0.00 0.00 32.78 1.90
20 21 6.154021 ACCACACAATTACGAGTACCTCTATT 59.846 38.462 0.00 0.00 0.00 1.73
21 22 5.655532 ACCACACAATTACGAGTACCTCTAT 59.344 40.000 0.00 0.00 0.00 1.98
22 23 5.012239 ACCACACAATTACGAGTACCTCTA 58.988 41.667 0.00 0.00 0.00 2.43
23 24 3.830755 ACCACACAATTACGAGTACCTCT 59.169 43.478 0.00 0.00 0.00 3.69
24 25 4.184079 ACCACACAATTACGAGTACCTC 57.816 45.455 0.00 0.00 0.00 3.85
25 26 4.612264 AACCACACAATTACGAGTACCT 57.388 40.909 0.00 0.00 0.00 3.08
26 27 5.713025 TCTAACCACACAATTACGAGTACC 58.287 41.667 0.00 0.00 0.00 3.34
27 28 7.596248 TCTTTCTAACCACACAATTACGAGTAC 59.404 37.037 0.00 0.00 0.00 2.73
28 29 7.660112 TCTTTCTAACCACACAATTACGAGTA 58.340 34.615 0.00 0.00 0.00 2.59
29 30 6.518493 TCTTTCTAACCACACAATTACGAGT 58.482 36.000 0.00 0.00 0.00 4.18
30 31 6.866770 TCTCTTTCTAACCACACAATTACGAG 59.133 38.462 0.00 0.00 0.00 4.18
31 32 6.751157 TCTCTTTCTAACCACACAATTACGA 58.249 36.000 0.00 0.00 0.00 3.43
32 33 7.416154 TTCTCTTTCTAACCACACAATTACG 57.584 36.000 0.00 0.00 0.00 3.18
36 37 9.965902 AGATATTTCTCTTTCTAACCACACAAT 57.034 29.630 0.00 0.00 0.00 2.71
37 38 9.219603 CAGATATTTCTCTTTCTAACCACACAA 57.780 33.333 0.00 0.00 0.00 3.33
38 39 7.334421 GCAGATATTTCTCTTTCTAACCACACA 59.666 37.037 0.00 0.00 0.00 3.72
39 40 7.464710 CGCAGATATTTCTCTTTCTAACCACAC 60.465 40.741 0.00 0.00 0.00 3.82
40 41 6.535150 CGCAGATATTTCTCTTTCTAACCACA 59.465 38.462 0.00 0.00 0.00 4.17
41 42 6.535508 ACGCAGATATTTCTCTTTCTAACCAC 59.464 38.462 0.00 0.00 0.00 4.16
42 43 6.640518 ACGCAGATATTTCTCTTTCTAACCA 58.359 36.000 0.00 0.00 0.00 3.67
43 44 6.074782 CGACGCAGATATTTCTCTTTCTAACC 60.075 42.308 0.00 0.00 0.00 2.85
44 45 6.691818 TCGACGCAGATATTTCTCTTTCTAAC 59.308 38.462 0.00 0.00 0.00 2.34
45 46 6.792326 TCGACGCAGATATTTCTCTTTCTAA 58.208 36.000 0.00 0.00 0.00 2.10
46 47 6.373186 TCGACGCAGATATTTCTCTTTCTA 57.627 37.500 0.00 0.00 0.00 2.10
47 48 5.250235 TCGACGCAGATATTTCTCTTTCT 57.750 39.130 0.00 0.00 0.00 2.52
48 49 6.637254 TGTATCGACGCAGATATTTCTCTTTC 59.363 38.462 4.13 0.00 35.78 2.62
49 50 6.504398 TGTATCGACGCAGATATTTCTCTTT 58.496 36.000 4.13 0.00 35.78 2.52
50 51 6.073327 TGTATCGACGCAGATATTTCTCTT 57.927 37.500 4.13 0.00 35.78 2.85
51 52 5.690997 TGTATCGACGCAGATATTTCTCT 57.309 39.130 4.13 0.00 35.78 3.10
52 53 5.685954 TGTTGTATCGACGCAGATATTTCTC 59.314 40.000 4.13 0.00 35.78 2.87
53 54 5.588240 TGTTGTATCGACGCAGATATTTCT 58.412 37.500 4.13 0.00 35.78 2.52
54 55 5.883328 TGTTGTATCGACGCAGATATTTC 57.117 39.130 4.13 0.42 35.78 2.17
55 56 5.276207 CGTTGTTGTATCGACGCAGATATTT 60.276 40.000 4.13 0.00 38.17 1.40
56 57 4.206404 CGTTGTTGTATCGACGCAGATATT 59.794 41.667 4.13 0.00 38.17 1.28
57 58 3.729217 CGTTGTTGTATCGACGCAGATAT 59.271 43.478 4.13 0.00 38.17 1.63
58 59 3.103007 CGTTGTTGTATCGACGCAGATA 58.897 45.455 0.00 0.00 38.17 1.98
59 60 1.917955 CGTTGTTGTATCGACGCAGAT 59.082 47.619 0.00 0.00 38.17 2.90
60 61 1.333115 CGTTGTTGTATCGACGCAGA 58.667 50.000 0.00 0.00 38.17 4.26
61 62 1.057636 ACGTTGTTGTATCGACGCAG 58.942 50.000 6.41 0.00 45.65 5.18
62 63 2.328655 TACGTTGTTGTATCGACGCA 57.671 45.000 0.00 0.00 45.65 5.24
63 64 3.540744 CCAATACGTTGTTGTATCGACGC 60.541 47.826 0.00 0.00 45.65 5.19
64 65 3.609373 ACCAATACGTTGTTGTATCGACG 59.391 43.478 0.00 5.15 46.69 5.12
65 66 4.032104 GGACCAATACGTTGTTGTATCGAC 59.968 45.833 0.00 0.00 34.01 4.20
66 67 4.082081 AGGACCAATACGTTGTTGTATCGA 60.082 41.667 0.00 0.00 34.01 3.59
67 68 4.032445 CAGGACCAATACGTTGTTGTATCG 59.968 45.833 0.00 0.00 34.01 2.92
68 69 5.172934 TCAGGACCAATACGTTGTTGTATC 58.827 41.667 0.00 0.29 34.01 2.24
69 70 5.155278 TCAGGACCAATACGTTGTTGTAT 57.845 39.130 0.00 0.00 36.62 2.29
70 71 4.603989 TCAGGACCAATACGTTGTTGTA 57.396 40.909 0.00 0.00 33.36 2.41
71 72 3.478857 TCAGGACCAATACGTTGTTGT 57.521 42.857 0.00 0.00 33.36 3.32
72 73 6.486248 CATATTCAGGACCAATACGTTGTTG 58.514 40.000 0.00 0.00 33.36 3.33
73 74 5.065988 GCATATTCAGGACCAATACGTTGTT 59.934 40.000 0.00 0.00 33.36 2.83
74 75 4.574828 GCATATTCAGGACCAATACGTTGT 59.425 41.667 0.00 0.00 33.36 3.32
75 76 4.816385 AGCATATTCAGGACCAATACGTTG 59.184 41.667 0.00 0.00 35.05 4.10
76 77 4.816385 CAGCATATTCAGGACCAATACGTT 59.184 41.667 0.00 0.00 0.00 3.99
77 78 4.380531 CAGCATATTCAGGACCAATACGT 58.619 43.478 0.00 0.00 0.00 3.57
78 79 3.748048 CCAGCATATTCAGGACCAATACG 59.252 47.826 0.00 0.00 0.00 3.06
79 80 3.503748 GCCAGCATATTCAGGACCAATAC 59.496 47.826 0.00 0.00 0.00 1.89
80 81 3.498481 GGCCAGCATATTCAGGACCAATA 60.498 47.826 0.00 0.00 0.00 1.90
81 82 2.590821 GCCAGCATATTCAGGACCAAT 58.409 47.619 0.00 0.00 0.00 3.16
82 83 1.410083 GGCCAGCATATTCAGGACCAA 60.410 52.381 0.00 0.00 0.00 3.67
83 84 0.183492 GGCCAGCATATTCAGGACCA 59.817 55.000 0.00 0.00 0.00 4.02
84 85 0.538287 GGGCCAGCATATTCAGGACC 60.538 60.000 4.39 0.00 43.32 4.46
85 86 0.538287 GGGGCCAGCATATTCAGGAC 60.538 60.000 4.39 0.00 0.00 3.85
86 87 1.719063 GGGGGCCAGCATATTCAGGA 61.719 60.000 4.39 0.00 0.00 3.86
87 88 1.228675 GGGGGCCAGCATATTCAGG 60.229 63.158 4.39 0.00 0.00 3.86
88 89 0.538977 CAGGGGGCCAGCATATTCAG 60.539 60.000 4.39 0.00 0.00 3.02
89 90 1.538167 CAGGGGGCCAGCATATTCA 59.462 57.895 4.39 0.00 0.00 2.57
90 91 1.228675 CCAGGGGGCCAGCATATTC 60.229 63.158 4.39 0.00 0.00 1.75
91 92 2.782417 CCCAGGGGGCCAGCATATT 61.782 63.158 4.39 0.00 35.35 1.28
92 93 3.188161 CCCAGGGGGCCAGCATAT 61.188 66.667 4.39 0.00 35.35 1.78
102 103 3.951769 CTTGAAGCAGGCCCAGGGG 62.952 68.421 7.91 3.48 38.57 4.79
103 104 2.362120 CTTGAAGCAGGCCCAGGG 60.362 66.667 0.00 0.00 0.00 4.45
104 105 2.202236 TAGCTTGAAGCAGGCCCAGG 62.202 60.000 20.45 0.00 45.56 4.45
105 106 0.106819 ATAGCTTGAAGCAGGCCCAG 60.107 55.000 20.45 0.00 45.56 4.45
106 107 1.141657 CTATAGCTTGAAGCAGGCCCA 59.858 52.381 20.45 0.00 45.56 5.36
107 108 1.889545 CTATAGCTTGAAGCAGGCCC 58.110 55.000 20.45 0.00 45.56 5.80
108 109 1.233919 GCTATAGCTTGAAGCAGGCC 58.766 55.000 20.45 0.00 45.56 5.19
109 110 1.959042 TGCTATAGCTTGAAGCAGGC 58.041 50.000 24.61 16.29 45.56 4.85
112 113 3.495629 CCCATCTGCTATAGCTTGAAGCA 60.496 47.826 24.61 14.34 45.56 3.91
113 114 3.072944 CCCATCTGCTATAGCTTGAAGC 58.927 50.000 24.61 9.59 42.84 3.86
114 115 4.040217 AGTCCCATCTGCTATAGCTTGAAG 59.960 45.833 24.61 17.76 42.66 3.02
115 116 3.969976 AGTCCCATCTGCTATAGCTTGAA 59.030 43.478 24.61 8.55 42.66 2.69
116 117 3.581101 AGTCCCATCTGCTATAGCTTGA 58.419 45.455 24.61 21.06 42.66 3.02
117 118 5.474578 TTAGTCCCATCTGCTATAGCTTG 57.525 43.478 24.61 17.91 42.66 4.01
118 119 4.020662 GCTTAGTCCCATCTGCTATAGCTT 60.021 45.833 24.61 7.81 42.66 3.74
119 120 3.513515 GCTTAGTCCCATCTGCTATAGCT 59.486 47.826 24.61 2.54 42.66 3.32
120 121 3.513515 AGCTTAGTCCCATCTGCTATAGC 59.486 47.826 18.18 18.18 42.50 2.97
121 122 5.949354 AGTAGCTTAGTCCCATCTGCTATAG 59.051 44.000 0.00 0.00 35.82 1.31
122 123 5.893500 AGTAGCTTAGTCCCATCTGCTATA 58.106 41.667 0.00 0.00 35.82 1.31
123 124 4.746466 AGTAGCTTAGTCCCATCTGCTAT 58.254 43.478 0.00 0.00 35.82 2.97
124 125 4.186077 AGTAGCTTAGTCCCATCTGCTA 57.814 45.455 0.00 0.00 32.72 3.49
125 126 3.039252 AGTAGCTTAGTCCCATCTGCT 57.961 47.619 0.00 0.00 34.92 4.24
126 127 3.828875 AAGTAGCTTAGTCCCATCTGC 57.171 47.619 0.00 0.00 0.00 4.26
127 128 8.561738 TTTAAAAAGTAGCTTAGTCCCATCTG 57.438 34.615 0.00 0.00 0.00 2.90
128 129 8.603304 TCTTTAAAAAGTAGCTTAGTCCCATCT 58.397 33.333 0.00 0.00 37.31 2.90
129 130 8.788325 TCTTTAAAAAGTAGCTTAGTCCCATC 57.212 34.615 0.00 0.00 37.31 3.51
130 131 9.232473 CTTCTTTAAAAAGTAGCTTAGTCCCAT 57.768 33.333 0.00 0.00 37.31 4.00
131 132 8.434392 TCTTCTTTAAAAAGTAGCTTAGTCCCA 58.566 33.333 0.00 0.00 37.31 4.37
132 133 8.843885 TCTTCTTTAAAAAGTAGCTTAGTCCC 57.156 34.615 0.00 0.00 37.31 4.46
140 141 9.723447 GGCAGAATATCTTCTTTAAAAAGTAGC 57.277 33.333 2.58 0.00 39.78 3.58
144 145 9.741647 GGATGGCAGAATATCTTCTTTAAAAAG 57.258 33.333 0.00 0.00 39.78 2.27
145 146 8.695456 GGGATGGCAGAATATCTTCTTTAAAAA 58.305 33.333 0.00 0.00 39.78 1.94
146 147 7.013274 CGGGATGGCAGAATATCTTCTTTAAAA 59.987 37.037 0.00 0.00 39.78 1.52
147 148 6.486657 CGGGATGGCAGAATATCTTCTTTAAA 59.513 38.462 0.00 0.00 39.78 1.52
148 149 5.997746 CGGGATGGCAGAATATCTTCTTTAA 59.002 40.000 0.00 0.00 39.78 1.52
149 150 5.306937 TCGGGATGGCAGAATATCTTCTTTA 59.693 40.000 0.00 0.00 39.78 1.85
150 151 4.103153 TCGGGATGGCAGAATATCTTCTTT 59.897 41.667 0.00 0.00 39.78 2.52
151 152 3.648067 TCGGGATGGCAGAATATCTTCTT 59.352 43.478 0.00 0.00 39.78 2.52
152 153 3.242867 TCGGGATGGCAGAATATCTTCT 58.757 45.455 0.00 0.00 42.59 2.85
153 154 3.594134 CTCGGGATGGCAGAATATCTTC 58.406 50.000 0.00 0.00 0.00 2.87
154 155 2.304180 CCTCGGGATGGCAGAATATCTT 59.696 50.000 0.00 0.00 0.00 2.40
155 156 1.905215 CCTCGGGATGGCAGAATATCT 59.095 52.381 0.00 0.00 0.00 1.98
156 157 1.902508 TCCTCGGGATGGCAGAATATC 59.097 52.381 0.00 0.00 0.00 1.63
157 158 1.905215 CTCCTCGGGATGGCAGAATAT 59.095 52.381 0.00 0.00 0.00 1.28
158 159 1.133167 TCTCCTCGGGATGGCAGAATA 60.133 52.381 0.00 0.00 0.00 1.75
159 160 0.399091 TCTCCTCGGGATGGCAGAAT 60.399 55.000 0.00 0.00 0.00 2.40
160 161 0.399091 ATCTCCTCGGGATGGCAGAA 60.399 55.000 0.00 0.00 0.00 3.02
161 162 0.482887 TATCTCCTCGGGATGGCAGA 59.517 55.000 0.00 0.00 0.00 4.26
162 163 1.566211 ATATCTCCTCGGGATGGCAG 58.434 55.000 0.00 0.00 0.00 4.85
163 164 2.030027 AATATCTCCTCGGGATGGCA 57.970 50.000 0.00 0.00 0.00 4.92
164 165 2.569404 AGAAATATCTCCTCGGGATGGC 59.431 50.000 0.00 0.00 0.00 4.40
165 166 4.899352 AAGAAATATCTCCTCGGGATGG 57.101 45.455 0.00 0.00 33.77 3.51
166 167 8.854614 AAATAAAGAAATATCTCCTCGGGATG 57.145 34.615 0.00 0.00 33.77 3.51
168 169 8.095169 GCTAAATAAAGAAATATCTCCTCGGGA 58.905 37.037 0.00 0.00 33.77 5.14
169 170 7.878127 TGCTAAATAAAGAAATATCTCCTCGGG 59.122 37.037 0.00 0.00 33.77 5.14
170 171 8.833231 TGCTAAATAAAGAAATATCTCCTCGG 57.167 34.615 0.00 0.00 33.77 4.63
177 178 9.914131 GGGTCCAATGCTAAATAAAGAAATATC 57.086 33.333 0.00 0.00 0.00 1.63
178 179 9.660544 AGGGTCCAATGCTAAATAAAGAAATAT 57.339 29.630 0.00 0.00 0.00 1.28
179 180 9.131791 GAGGGTCCAATGCTAAATAAAGAAATA 57.868 33.333 0.00 0.00 0.00 1.40
180 181 7.069950 GGAGGGTCCAATGCTAAATAAAGAAAT 59.930 37.037 0.00 0.00 36.28 2.17
181 182 6.379988 GGAGGGTCCAATGCTAAATAAAGAAA 59.620 38.462 0.00 0.00 36.28 2.52
182 183 5.891551 GGAGGGTCCAATGCTAAATAAAGAA 59.108 40.000 0.00 0.00 36.28 2.52
183 184 5.044476 TGGAGGGTCCAATGCTAAATAAAGA 60.044 40.000 0.00 0.00 45.00 2.52
184 185 5.200483 TGGAGGGTCCAATGCTAAATAAAG 58.800 41.667 0.00 0.00 45.00 1.85
185 186 5.199982 TGGAGGGTCCAATGCTAAATAAA 57.800 39.130 0.00 0.00 45.00 1.40
186 187 4.871871 TGGAGGGTCCAATGCTAAATAA 57.128 40.909 0.00 0.00 45.00 1.40
198 199 1.428869 ATGACTGCTATGGAGGGTCC 58.571 55.000 0.00 0.00 36.96 4.46
199 200 3.834813 TGATATGACTGCTATGGAGGGTC 59.165 47.826 0.00 0.00 0.00 4.46
200 201 3.837146 CTGATATGACTGCTATGGAGGGT 59.163 47.826 0.00 0.00 0.00 4.34
201 202 3.837146 ACTGATATGACTGCTATGGAGGG 59.163 47.826 0.00 0.00 0.00 4.30
202 203 5.480642 AACTGATATGACTGCTATGGAGG 57.519 43.478 0.00 0.00 0.00 4.30
203 204 9.499479 AATAAAACTGATATGACTGCTATGGAG 57.501 33.333 0.00 0.00 0.00 3.86
234 235 6.568271 GCCGTTTTTCGAGGGATAACTAAAAA 60.568 38.462 0.00 0.00 42.86 1.94
235 236 5.106594 GCCGTTTTTCGAGGGATAACTAAAA 60.107 40.000 0.00 0.00 42.86 1.52
236 237 4.392754 GCCGTTTTTCGAGGGATAACTAAA 59.607 41.667 0.00 0.00 42.86 1.85
237 238 3.934579 GCCGTTTTTCGAGGGATAACTAA 59.065 43.478 0.00 0.00 42.86 2.24
238 239 3.524541 GCCGTTTTTCGAGGGATAACTA 58.475 45.455 0.00 0.00 42.86 2.24
239 240 2.353323 GCCGTTTTTCGAGGGATAACT 58.647 47.619 0.00 0.00 42.86 2.24
240 241 1.399440 GGCCGTTTTTCGAGGGATAAC 59.601 52.381 0.00 0.00 42.86 1.89
241 242 1.741528 GGCCGTTTTTCGAGGGATAA 58.258 50.000 0.00 0.00 42.86 1.75
242 243 0.460635 CGGCCGTTTTTCGAGGGATA 60.461 55.000 19.50 0.00 42.86 2.59
243 244 1.743995 CGGCCGTTTTTCGAGGGAT 60.744 57.895 19.50 0.00 42.86 3.85
244 245 2.357760 CGGCCGTTTTTCGAGGGA 60.358 61.111 19.50 0.00 42.86 4.20
245 246 4.097863 GCGGCCGTTTTTCGAGGG 62.098 66.667 28.70 0.00 42.86 4.30
246 247 4.439472 CGCGGCCGTTTTTCGAGG 62.439 66.667 28.70 1.07 42.86 4.63
1029 1037 1.210870 TTTTTGTTCGTCGTCTCCGG 58.789 50.000 0.00 0.00 33.95 5.14
2092 2101 8.315482 AGAAAAACTACTTCTTCTGGATCCTAC 58.685 37.037 14.23 0.00 28.46 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.