Multiple sequence alignment - TraesCS5D01G376800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G376800 chr5D 100.000 3182 0 0 1 3182 449148761 449151942 0.000000e+00 5877.0
1 TraesCS5D01G376800 chr5D 98.626 655 7 1 2530 3182 240135571 240134917 0.000000e+00 1158.0
2 TraesCS5D01G376800 chr5D 97.710 655 12 2 2530 3182 6203411 6204064 0.000000e+00 1123.0
3 TraesCS5D01G376800 chr5D 99.029 206 2 0 168 373 463831067 463830862 1.390000e-98 370.0
4 TraesCS5D01G376800 chr5D 98.795 166 2 0 1 166 539093964 539094129 2.400000e-76 296.0
5 TraesCS5D01G376800 chr5D 97.633 169 4 0 1 169 51646927 51646759 1.120000e-74 291.0
6 TraesCS5D01G376800 chr5D 98.611 144 2 0 2755 2898 123141467 123141324 4.070000e-64 255.0
7 TraesCS5D01G376800 chr5D 95.652 115 5 0 2581 2695 270282386 270282500 5.420000e-43 185.0
8 TraesCS5D01G376800 chr5D 98.246 57 1 0 2731 2787 69094749 69094693 2.020000e-17 100.0
9 TraesCS5D01G376800 chr7B 99.007 2114 20 1 418 2531 662733729 662735841 0.000000e+00 3786.0
10 TraesCS5D01G376800 chr7B 97.732 2116 45 2 418 2531 90404149 90402035 0.000000e+00 3639.0
11 TraesCS5D01G376800 chr7B 98.045 358 6 1 2757 3114 593932354 593931998 3.490000e-174 621.0
12 TraesCS5D01G376800 chr7B 98.810 168 2 0 418 585 673661646 673661813 1.860000e-77 300.0
13 TraesCS5D01G376800 chr7B 100.000 108 0 0 449 556 571567707 571567814 1.940000e-47 200.0
14 TraesCS5D01G376800 chr3B 98.770 2114 25 1 418 2531 201564566 201562454 0.000000e+00 3759.0
15 TraesCS5D01G376800 chr3B 98.471 654 9 1 2530 3182 201510993 201510340 0.000000e+00 1151.0
16 TraesCS5D01G376800 chrUn 98.677 2116 24 2 418 2531 351215174 351213061 0.000000e+00 3749.0
17 TraesCS5D01G376800 chrUn 98.198 111 1 1 3072 3182 441827187 441827296 3.240000e-45 193.0
18 TraesCS5D01G376800 chrUn 90.278 72 6 1 3019 3090 359298919 359298989 3.380000e-15 93.5
19 TraesCS5D01G376800 chrUn 90.278 72 6 1 3019 3090 409018504 409018574 3.380000e-15 93.5
20 TraesCS5D01G376800 chrUn 90.278 72 6 1 3019 3090 442510150 442510220 3.380000e-15 93.5
21 TraesCS5D01G376800 chr1D 98.486 2114 30 2 418 2531 254532413 254534524 0.000000e+00 3725.0
22 TraesCS5D01G376800 chr1D 98.926 652 5 1 2531 3182 254495873 254495224 0.000000e+00 1164.0
23 TraesCS5D01G376800 chr1D 98.626 655 7 1 2530 3182 483916737 483917391 0.000000e+00 1158.0
24 TraesCS5D01G376800 chr1D 95.327 321 14 1 2530 2849 64494261 64494581 2.830000e-140 508.0
25 TraesCS5D01G376800 chr1D 99.517 207 1 0 167 373 154824146 154823940 8.330000e-101 377.0
26 TraesCS5D01G376800 chr1D 98.193 166 3 0 1 166 325089424 325089589 1.120000e-74 291.0
27 TraesCS5D01G376800 chr1D 97.633 169 2 1 2530 2696 68408713 68408881 4.020000e-74 289.0
28 TraesCS5D01G376800 chr1D 96.000 75 2 1 3074 3148 226012555 226012628 1.550000e-23 121.0
29 TraesCS5D01G376800 chr1D 98.214 56 1 0 2767 2822 51875492 51875437 7.260000e-17 99.0
30 TraesCS5D01G376800 chr3A 98.156 2115 36 3 418 2531 672882213 672880101 0.000000e+00 3687.0
31 TraesCS5D01G376800 chr3A 99.130 230 1 1 418 647 593304094 593303866 2.280000e-111 412.0
32 TraesCS5D01G376800 chr1B 98.156 2115 36 3 418 2531 633732655 633730543 0.000000e+00 3687.0
33 TraesCS5D01G376800 chr1B 98.667 75 1 0 418 492 246499441 246499367 1.990000e-27 134.0
34 TraesCS5D01G376800 chr1B 90.566 53 4 1 552 604 93864603 93864654 5.700000e-08 69.4
35 TraesCS5D01G376800 chr6B 98.430 1974 25 3 418 2386 615600790 615598818 0.000000e+00 3469.0
36 TraesCS5D01G376800 chr7A 95.234 2119 88 9 418 2531 352681222 352679112 0.000000e+00 3341.0
37 TraesCS5D01G376800 chr3D 98.779 655 5 2 2530 3182 21901955 21901302 0.000000e+00 1162.0
38 TraesCS5D01G376800 chr3D 98.920 463 4 1 2533 2994 21902488 21902026 0.000000e+00 826.0
39 TraesCS5D01G376800 chr3D 94.198 293 16 1 2778 3070 386441194 386441485 2.250000e-121 446.0
40 TraesCS5D01G376800 chr3D 99.029 206 2 0 168 373 483839372 483839167 1.390000e-98 370.0
41 TraesCS5D01G376800 chr3D 98.225 169 3 0 1 169 98810536 98810368 2.400000e-76 296.0
42 TraesCS5D01G376800 chr2B 98.168 655 9 2 2530 3182 474897733 474898386 0.000000e+00 1140.0
43 TraesCS5D01G376800 chr2B 99.189 370 3 0 2813 3182 474898529 474898898 0.000000e+00 667.0
44 TraesCS5D01G376800 chr2B 98.601 286 3 1 418 703 474927753 474928037 3.660000e-139 505.0
45 TraesCS5D01G376800 chr2D 97.252 655 13 4 2530 3182 334230358 334229707 0.000000e+00 1105.0
46 TraesCS5D01G376800 chr2D 98.795 166 2 0 1 166 96811034 96811199 2.400000e-76 296.0
47 TraesCS5D01G376800 chr4D 96.784 653 21 0 2530 3182 19914363 19913711 0.000000e+00 1090.0
48 TraesCS5D01G376800 chr4D 99.038 208 2 0 166 373 2149187 2148980 1.080000e-99 374.0
49 TraesCS5D01G376800 chr4D 99.034 207 2 0 167 373 254503647 254503853 3.880000e-99 372.0
50 TraesCS5D01G376800 chr4D 99.029 206 2 0 168 373 262069440 262069235 1.390000e-98 370.0
51 TraesCS5D01G376800 chr4D 98.551 207 3 0 167 373 178140104 178140310 1.800000e-97 366.0
52 TraesCS5D01G376800 chr4D 98.193 166 3 0 1 166 370220510 370220675 1.120000e-74 291.0
53 TraesCS5D01G376800 chr4D 97.368 152 3 1 2991 3141 236302684 236302835 1.130000e-64 257.0
54 TraesCS5D01G376800 chr4D 98.361 122 2 0 2765 2886 329762241 329762362 6.910000e-52 215.0
55 TraesCS5D01G376800 chr4D 95.122 82 3 1 2995 3076 253857581 253857661 9.260000e-26 128.0
56 TraesCS5D01G376800 chr4D 100.000 64 0 0 2904 2967 29923891 29923954 5.580000e-23 119.0
57 TraesCS5D01G376800 chr4D 98.214 56 1 0 2723 2778 148060809 148060864 7.260000e-17 99.0
58 TraesCS5D01G376800 chr7D 97.909 287 4 2 2530 2814 18697990 18698276 2.200000e-136 496.0
59 TraesCS5D01G376800 chr7D 99.515 206 1 0 168 373 51775165 51774960 3.000000e-100 375.0
60 TraesCS5D01G376800 chr7D 99.034 207 1 1 167 373 111559382 111559177 1.390000e-98 370.0
61 TraesCS5D01G376800 chr7D 98.795 166 2 0 1 166 414406625 414406790 2.400000e-76 296.0
62 TraesCS5D01G376800 chr7D 98.795 166 2 0 1 166 517044515 517044680 2.400000e-76 296.0
63 TraesCS5D01G376800 chr4B 97.318 261 6 1 2922 3182 645424581 645424322 2.910000e-120 442.0
64 TraesCS5D01G376800 chr6D 100.000 163 0 0 2863 3025 112848976 112848814 5.160000e-78 302.0
65 TraesCS5D01G376800 chr6D 97.633 169 4 0 1 169 450791054 450790886 1.120000e-74 291.0
66 TraesCS5D01G376800 chr6D 97.692 130 2 1 2656 2785 173308754 173308882 4.130000e-54 222.0
67 TraesCS5D01G376800 chr6D 97.826 46 1 0 2530 2575 224299754 224299709 2.630000e-11 80.5
68 TraesCS5D01G376800 chr6A 92.537 134 8 1 3033 3166 411081859 411081990 1.170000e-44 191.0
69 TraesCS5D01G376800 chr6A 90.625 96 8 1 2860 2954 63302405 63302500 3.330000e-25 126.0
70 TraesCS5D01G376800 chr6A 96.970 66 2 0 2816 2881 602047869 602047934 9.330000e-21 111.0
71 TraesCS5D01G376800 chr6A 91.489 47 4 0 2627 2673 310687798 310687752 7.370000e-07 65.8
72 TraesCS5D01G376800 chr1A 96.491 114 1 2 2530 2640 463904250 463904363 5.420000e-43 185.0
73 TraesCS5D01G376800 chr1A 91.753 97 7 1 2530 2626 35591121 35591026 1.990000e-27 134.0
74 TraesCS5D01G376800 chr4A 94.545 55 3 0 452 506 83750285 83750231 5.660000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G376800 chr5D 449148761 449151942 3181 False 5877.0 5877 100.0000 1 3182 1 chr5D.!!$F3 3181
1 TraesCS5D01G376800 chr5D 240134917 240135571 654 True 1158.0 1158 98.6260 2530 3182 1 chr5D.!!$R4 652
2 TraesCS5D01G376800 chr5D 6203411 6204064 653 False 1123.0 1123 97.7100 2530 3182 1 chr5D.!!$F1 652
3 TraesCS5D01G376800 chr7B 662733729 662735841 2112 False 3786.0 3786 99.0070 418 2531 1 chr7B.!!$F2 2113
4 TraesCS5D01G376800 chr7B 90402035 90404149 2114 True 3639.0 3639 97.7320 418 2531 1 chr7B.!!$R1 2113
5 TraesCS5D01G376800 chr3B 201562454 201564566 2112 True 3759.0 3759 98.7700 418 2531 1 chr3B.!!$R2 2113
6 TraesCS5D01G376800 chr3B 201510340 201510993 653 True 1151.0 1151 98.4710 2530 3182 1 chr3B.!!$R1 652
7 TraesCS5D01G376800 chrUn 351213061 351215174 2113 True 3749.0 3749 98.6770 418 2531 1 chrUn.!!$R1 2113
8 TraesCS5D01G376800 chr1D 254532413 254534524 2111 False 3725.0 3725 98.4860 418 2531 1 chr1D.!!$F4 2113
9 TraesCS5D01G376800 chr1D 254495224 254495873 649 True 1164.0 1164 98.9260 2531 3182 1 chr1D.!!$R3 651
10 TraesCS5D01G376800 chr1D 483916737 483917391 654 False 1158.0 1158 98.6260 2530 3182 1 chr1D.!!$F6 652
11 TraesCS5D01G376800 chr3A 672880101 672882213 2112 True 3687.0 3687 98.1560 418 2531 1 chr3A.!!$R2 2113
12 TraesCS5D01G376800 chr1B 633730543 633732655 2112 True 3687.0 3687 98.1560 418 2531 1 chr1B.!!$R2 2113
13 TraesCS5D01G376800 chr6B 615598818 615600790 1972 True 3469.0 3469 98.4300 418 2386 1 chr6B.!!$R1 1968
14 TraesCS5D01G376800 chr7A 352679112 352681222 2110 True 3341.0 3341 95.2340 418 2531 1 chr7A.!!$R1 2113
15 TraesCS5D01G376800 chr3D 21901302 21902488 1186 True 994.0 1162 98.8495 2530 3182 2 chr3D.!!$R3 652
16 TraesCS5D01G376800 chr2B 474897733 474898898 1165 False 903.5 1140 98.6785 2530 3182 2 chr2B.!!$F2 652
17 TraesCS5D01G376800 chr2D 334229707 334230358 651 True 1105.0 1105 97.2520 2530 3182 1 chr2D.!!$R1 652
18 TraesCS5D01G376800 chr4D 19913711 19914363 652 True 1090.0 1090 96.7840 2530 3182 1 chr4D.!!$R2 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.175302 TTCGGCCGCGGAATTACTTA 59.825 50.0 33.48 1.28 0.0 2.24 F
375 376 0.396811 GCGCACCAGGGGATAGTATT 59.603 55.0 0.30 0.00 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 1695 8.070034 TCTACTTTACGAAGATCCCATTGTAA 57.93 34.615 0.0 0.0 36.69 2.41 R
2249 2266 7.339721 GGGTAGAATCGATATCAGTCCATAGAA 59.66 40.741 0.0 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.668632 GGGCCGAACACCTGATCA 59.331 61.111 0.00 0.00 0.00 2.92
37 38 1.224592 GGGCCGAACACCTGATCAT 59.775 57.895 0.00 0.00 0.00 2.45
38 39 0.815615 GGGCCGAACACCTGATCATC 60.816 60.000 0.00 0.00 0.00 2.92
39 40 0.815615 GGCCGAACACCTGATCATCC 60.816 60.000 0.00 0.00 0.00 3.51
40 41 0.179000 GCCGAACACCTGATCATCCT 59.821 55.000 0.00 0.00 0.00 3.24
41 42 1.808133 GCCGAACACCTGATCATCCTC 60.808 57.143 0.00 0.00 0.00 3.71
42 43 1.536922 CCGAACACCTGATCATCCTCG 60.537 57.143 0.00 1.10 0.00 4.63
43 44 1.576356 GAACACCTGATCATCCTCGC 58.424 55.000 0.00 0.00 0.00 5.03
44 45 0.179000 AACACCTGATCATCCTCGCC 59.821 55.000 0.00 0.00 0.00 5.54
45 46 0.689080 ACACCTGATCATCCTCGCCT 60.689 55.000 0.00 0.00 0.00 5.52
47 48 1.134280 CACCTGATCATCCTCGCCTTT 60.134 52.381 0.00 0.00 0.00 3.11
48 49 1.561542 ACCTGATCATCCTCGCCTTTT 59.438 47.619 0.00 0.00 0.00 2.27
72 73 1.237285 CCAGTCCTGGTCAAAAGGCG 61.237 60.000 5.11 0.00 45.53 5.52
73 74 0.250295 CAGTCCTGGTCAAAAGGCGA 60.250 55.000 0.00 0.00 34.56 5.54
74 75 0.250338 AGTCCTGGTCAAAAGGCGAC 60.250 55.000 0.00 0.00 34.56 5.19
89 90 3.679389 AGGCGACTTTTCAGAATGATGT 58.321 40.909 0.00 0.00 42.55 3.06
90 91 4.074970 AGGCGACTTTTCAGAATGATGTT 58.925 39.130 0.00 0.00 42.55 2.71
91 92 4.083110 AGGCGACTTTTCAGAATGATGTTG 60.083 41.667 0.00 0.00 42.55 3.33
93 94 8.433758 AGGCGACTTTTCAGAATGATGTTGTG 62.434 42.308 0.00 0.00 42.55 3.33
112 113 9.959749 ATGTTGTGATAAATTAAAAGACAACGT 57.040 25.926 0.00 0.00 42.87 3.99
113 114 9.227490 TGTTGTGATAAATTAAAAGACAACGTG 57.773 29.630 0.00 0.00 42.87 4.49
115 116 9.790389 TTGTGATAAATTAAAAGACAACGTGTT 57.210 25.926 0.00 0.00 0.00 3.32
116 117 9.440784 TGTGATAAATTAAAAGACAACGTGTTC 57.559 29.630 0.00 0.00 0.00 3.18
117 118 8.615585 GTGATAAATTAAAAGACAACGTGTTCG 58.384 33.333 0.00 0.00 43.34 3.95
118 119 7.799447 TGATAAATTAAAAGACAACGTGTTCGG 59.201 33.333 0.00 0.00 41.85 4.30
119 120 3.322230 TTAAAAGACAACGTGTTCGGC 57.678 42.857 0.00 0.00 41.85 5.54
120 121 0.379316 AAAAGACAACGTGTTCGGCC 59.621 50.000 0.00 0.00 41.85 6.13
121 122 1.768112 AAAGACAACGTGTTCGGCCG 61.768 55.000 22.12 22.12 41.85 6.13
122 123 4.364409 GACAACGTGTTCGGCCGC 62.364 66.667 23.51 8.29 41.85 6.53
128 129 3.428282 GTGTTCGGCCGCGGAATT 61.428 61.111 33.48 0.00 0.00 2.17
130 131 2.101835 TGTTCGGCCGCGGAATTAC 61.102 57.895 33.48 20.54 0.00 1.89
132 133 1.078988 TTCGGCCGCGGAATTACTT 60.079 52.632 33.48 0.00 0.00 2.24
133 134 0.175302 TTCGGCCGCGGAATTACTTA 59.825 50.000 33.48 1.28 0.00 2.24
134 135 0.528249 TCGGCCGCGGAATTACTTAC 60.528 55.000 33.48 7.28 0.00 2.34
135 136 0.529119 CGGCCGCGGAATTACTTACT 60.529 55.000 33.48 0.00 0.00 2.24
137 138 1.329599 GGCCGCGGAATTACTTACTTG 59.670 52.381 33.48 0.00 0.00 3.16
138 139 1.329599 GCCGCGGAATTACTTACTTGG 59.670 52.381 33.48 0.00 0.00 3.61
139 140 1.937899 CCGCGGAATTACTTACTTGGG 59.062 52.381 24.07 0.00 0.00 4.12
140 141 2.624636 CGCGGAATTACTTACTTGGGT 58.375 47.619 0.00 0.00 0.00 4.51
141 142 2.350498 CGCGGAATTACTTACTTGGGTG 59.650 50.000 0.00 0.00 0.00 4.61
143 144 3.373130 GCGGAATTACTTACTTGGGTGTC 59.627 47.826 0.00 0.00 0.00 3.67
144 145 4.828829 CGGAATTACTTACTTGGGTGTCT 58.171 43.478 0.00 0.00 0.00 3.41
145 146 4.630069 CGGAATTACTTACTTGGGTGTCTG 59.370 45.833 0.00 0.00 0.00 3.51
146 147 4.941873 GGAATTACTTACTTGGGTGTCTGG 59.058 45.833 0.00 0.00 0.00 3.86
147 148 5.280317 GGAATTACTTACTTGGGTGTCTGGA 60.280 44.000 0.00 0.00 0.00 3.86
148 149 4.612264 TTACTTACTTGGGTGTCTGGAC 57.388 45.455 0.00 0.00 0.00 4.02
149 150 1.343465 ACTTACTTGGGTGTCTGGACG 59.657 52.381 0.00 0.00 0.00 4.79
150 151 1.616865 CTTACTTGGGTGTCTGGACGA 59.383 52.381 0.00 0.00 0.00 4.20
151 152 1.933021 TACTTGGGTGTCTGGACGAT 58.067 50.000 0.00 0.00 0.00 3.73
153 154 1.270839 ACTTGGGTGTCTGGACGATTG 60.271 52.381 0.00 0.00 0.00 2.67
154 155 0.605319 TTGGGTGTCTGGACGATTGC 60.605 55.000 0.00 0.00 0.00 3.56
156 157 1.021390 GGGTGTCTGGACGATTGCAG 61.021 60.000 0.00 0.00 42.47 4.41
160 161 1.069978 TGTCTGGACGATTGCAGTTCA 59.930 47.619 0.00 0.00 41.80 3.18
161 162 1.728971 GTCTGGACGATTGCAGTTCAG 59.271 52.381 6.54 6.54 44.52 3.02
162 163 2.084610 CTGGACGATTGCAGTTCAGA 57.915 50.000 7.00 0.00 45.68 3.27
163 164 1.728971 CTGGACGATTGCAGTTCAGAC 59.271 52.381 7.00 0.00 45.68 3.51
164 165 1.079503 GGACGATTGCAGTTCAGACC 58.920 55.000 0.00 0.00 0.00 3.85
165 166 1.079503 GACGATTGCAGTTCAGACCC 58.920 55.000 0.00 0.00 0.00 4.46
167 168 0.798776 CGATTGCAGTTCAGACCCAC 59.201 55.000 0.00 0.00 0.00 4.61
169 170 1.537202 GATTGCAGTTCAGACCCACAC 59.463 52.381 0.00 0.00 0.00 3.82
170 171 0.546122 TTGCAGTTCAGACCCACACT 59.454 50.000 0.00 0.00 0.00 3.55
171 172 1.419381 TGCAGTTCAGACCCACACTA 58.581 50.000 0.00 0.00 0.00 2.74
172 173 1.070134 TGCAGTTCAGACCCACACTAC 59.930 52.381 0.00 0.00 0.00 2.73
173 174 1.344763 GCAGTTCAGACCCACACTACT 59.655 52.381 0.00 0.00 0.00 2.57
174 175 2.561419 GCAGTTCAGACCCACACTACTA 59.439 50.000 0.00 0.00 0.00 1.82
175 176 3.367498 GCAGTTCAGACCCACACTACTAG 60.367 52.174 0.00 0.00 0.00 2.57
176 177 3.193691 CAGTTCAGACCCACACTACTAGG 59.806 52.174 0.00 0.00 0.00 3.02
178 179 3.820195 TCAGACCCACACTACTAGGAA 57.180 47.619 0.00 0.00 0.00 3.36
179 180 4.122337 TCAGACCCACACTACTAGGAAA 57.878 45.455 0.00 0.00 0.00 3.13
180 181 4.485875 TCAGACCCACACTACTAGGAAAA 58.514 43.478 0.00 0.00 0.00 2.29
181 182 4.527038 TCAGACCCACACTACTAGGAAAAG 59.473 45.833 0.00 0.00 0.00 2.27
182 183 3.838903 AGACCCACACTACTAGGAAAAGG 59.161 47.826 0.00 0.00 0.00 3.11
183 184 2.910977 ACCCACACTACTAGGAAAAGGG 59.089 50.000 0.00 0.00 39.66 3.95
185 186 2.572104 CCACACTACTAGGAAAAGGGCT 59.428 50.000 0.00 0.00 0.00 5.19
186 187 3.773119 CCACACTACTAGGAAAAGGGCTA 59.227 47.826 0.00 0.00 0.00 3.93
188 189 5.601313 CCACACTACTAGGAAAAGGGCTATA 59.399 44.000 0.00 0.00 0.00 1.31
190 191 6.550108 CACACTACTAGGAAAAGGGCTATAGA 59.450 42.308 3.21 0.00 0.00 1.98
192 193 8.454494 ACACTACTAGGAAAAGGGCTATAGATA 58.546 37.037 3.21 0.00 0.00 1.98
193 194 9.310449 CACTACTAGGAAAAGGGCTATAGATAA 57.690 37.037 3.21 0.00 0.00 1.75
198 199 9.454859 CTAGGAAAAGGGCTATAGATAATTTGG 57.545 37.037 3.21 0.00 0.00 3.28
199 200 8.057246 AGGAAAAGGGCTATAGATAATTTGGA 57.943 34.615 3.21 0.00 0.00 3.53
200 201 7.945109 AGGAAAAGGGCTATAGATAATTTGGAC 59.055 37.037 3.21 0.00 0.00 4.02
202 203 8.465273 AAAAGGGCTATAGATAATTTGGACAC 57.535 34.615 3.21 0.00 0.00 3.67
205 206 8.506196 AGGGCTATAGATAATTTGGACACTAA 57.494 34.615 3.21 0.00 0.00 2.24
206 207 9.117223 AGGGCTATAGATAATTTGGACACTAAT 57.883 33.333 3.21 0.00 0.00 1.73
207 208 9.167311 GGGCTATAGATAATTTGGACACTAATG 57.833 37.037 3.21 0.00 0.00 1.90
208 209 9.167311 GGCTATAGATAATTTGGACACTAATGG 57.833 37.037 3.21 0.00 0.00 3.16
209 210 8.669243 GCTATAGATAATTTGGACACTAATGGC 58.331 37.037 3.21 0.00 0.00 4.40
210 211 7.672983 ATAGATAATTTGGACACTAATGGCG 57.327 36.000 0.00 0.00 32.81 5.69
211 212 2.939460 AATTTGGACACTAATGGCGC 57.061 45.000 0.00 0.00 32.81 6.53
212 213 1.832883 ATTTGGACACTAATGGCGCA 58.167 45.000 10.83 0.00 32.81 6.09
213 214 0.878416 TTTGGACACTAATGGCGCAC 59.122 50.000 10.83 0.00 32.81 5.34
214 215 0.958382 TTGGACACTAATGGCGCACC 60.958 55.000 10.83 0.00 32.81 5.01
223 224 3.285982 TGGCGCACCACACATGTG 61.286 61.111 24.25 24.25 42.67 3.21
242 243 3.928727 TGGTGCGCCACTACTATATAC 57.071 47.619 16.89 0.00 40.46 1.47
243 244 3.493334 TGGTGCGCCACTACTATATACT 58.507 45.455 16.89 0.00 40.46 2.12
246 247 5.713389 TGGTGCGCCACTACTATATACTAAT 59.287 40.000 16.89 0.00 40.46 1.73
247 248 6.034591 GGTGCGCCACTACTATATACTAATG 58.965 44.000 12.58 0.00 34.40 1.90
249 250 5.041940 GCGCCACTACTATATACTAATGGC 58.958 45.833 10.25 10.25 46.34 4.40
251 252 5.041940 GCCACTACTATATACTAATGGCGC 58.958 45.833 0.00 0.00 41.74 6.53
253 254 6.034591 CCACTACTATATACTAATGGCGCAC 58.965 44.000 10.83 0.00 0.00 5.34
272 273 1.173043 CCATGTGTTGGTACGCCATT 58.827 50.000 0.00 0.00 45.56 3.16
273 274 2.360844 CCATGTGTTGGTACGCCATTA 58.639 47.619 0.00 0.00 45.56 1.90
274 275 2.354510 CCATGTGTTGGTACGCCATTAG 59.645 50.000 0.00 0.00 45.56 1.73
275 276 2.843401 TGTGTTGGTACGCCATTAGT 57.157 45.000 0.00 0.00 45.56 2.24
276 277 2.418692 TGTGTTGGTACGCCATTAGTG 58.581 47.619 0.00 0.00 45.56 2.74
278 279 2.414138 GTGTTGGTACGCCATTAGTGTC 59.586 50.000 0.00 0.00 45.56 3.67
279 280 2.004733 GTTGGTACGCCATTAGTGTCC 58.995 52.381 0.00 0.00 45.56 4.02
283 284 3.275999 GGTACGCCATTAGTGTCCAAAT 58.724 45.455 0.00 0.00 40.51 2.32
285 286 4.271776 GGTACGCCATTAGTGTCCAAATAC 59.728 45.833 0.00 0.00 40.51 1.89
286 287 4.216411 ACGCCATTAGTGTCCAAATACT 57.784 40.909 0.00 0.00 32.22 2.12
289 290 6.354130 ACGCCATTAGTGTCCAAATACTAAT 58.646 36.000 0.00 0.00 45.40 1.73
293 294 6.861065 ATTAGTGTCCAAATACTAATGGCG 57.139 37.500 8.38 0.00 43.86 5.69
294 295 2.943033 AGTGTCCAAATACTAATGGCGC 59.057 45.455 0.00 0.00 36.62 6.53
295 296 2.680841 GTGTCCAAATACTAATGGCGCA 59.319 45.455 10.83 0.00 36.62 6.09
296 297 2.680841 TGTCCAAATACTAATGGCGCAC 59.319 45.455 10.83 0.00 36.62 5.34
311 312 3.422303 CACCACATCCACGGTGCG 61.422 66.667 1.68 0.00 45.77 5.34
317 318 3.387091 ATCCACGGTGCGCCACTA 61.387 61.111 18.18 0.00 34.40 2.74
318 319 3.659089 ATCCACGGTGCGCCACTAC 62.659 63.158 18.18 0.00 34.40 2.73
319 320 4.373116 CCACGGTGCGCCACTACT 62.373 66.667 18.18 0.00 34.40 2.57
320 321 2.569657 CACGGTGCGCCACTACTA 59.430 61.111 18.18 0.00 34.40 1.82
321 322 1.080366 CACGGTGCGCCACTACTAA 60.080 57.895 18.18 0.00 34.40 2.24
322 323 1.080298 ACGGTGCGCCACTACTAAC 60.080 57.895 18.18 0.00 34.40 2.34
324 325 0.668096 CGGTGCGCCACTACTAACAA 60.668 55.000 18.18 0.00 34.40 2.83
325 326 1.734163 GGTGCGCCACTACTAACAAT 58.266 50.000 12.58 0.00 34.40 2.71
326 327 2.081462 GGTGCGCCACTACTAACAATT 58.919 47.619 12.58 0.00 34.40 2.32
327 328 2.486592 GGTGCGCCACTACTAACAATTT 59.513 45.455 12.58 0.00 34.40 1.82
328 329 3.057806 GGTGCGCCACTACTAACAATTTT 60.058 43.478 12.58 0.00 34.40 1.82
371 372 3.479203 TGGCGCACCAGGGGATAG 61.479 66.667 10.83 0.00 42.67 2.08
373 374 2.138179 GGCGCACCAGGGGATAGTA 61.138 63.158 10.83 0.00 35.26 1.82
374 375 1.481056 GGCGCACCAGGGGATAGTAT 61.481 60.000 10.83 0.00 35.26 2.12
375 376 0.396811 GCGCACCAGGGGATAGTATT 59.603 55.000 0.30 0.00 0.00 1.89
377 378 2.748465 GCGCACCAGGGGATAGTATTTT 60.748 50.000 0.30 0.00 0.00 1.82
378 379 3.139077 CGCACCAGGGGATAGTATTTTC 58.861 50.000 0.00 0.00 0.00 2.29
380 381 3.117663 GCACCAGGGGATAGTATTTTCCA 60.118 47.826 0.00 0.00 33.43 3.53
381 382 4.630184 GCACCAGGGGATAGTATTTTCCAA 60.630 45.833 0.00 0.00 33.43 3.53
382 383 5.515106 CACCAGGGGATAGTATTTTCCAAA 58.485 41.667 0.00 0.00 33.43 3.28
383 384 5.359860 CACCAGGGGATAGTATTTTCCAAAC 59.640 44.000 0.00 0.00 33.43 2.93
384 385 5.255443 ACCAGGGGATAGTATTTTCCAAACT 59.745 40.000 0.00 0.00 33.43 2.66
385 386 6.449041 ACCAGGGGATAGTATTTTCCAAACTA 59.551 38.462 0.00 0.00 33.43 2.24
386 387 7.036425 ACCAGGGGATAGTATTTTCCAAACTAA 60.036 37.037 0.00 0.00 33.43 2.24
387 388 8.004801 CCAGGGGATAGTATTTTCCAAACTAAT 58.995 37.037 0.00 0.00 33.43 1.73
415 416 9.683069 AATCATGACTTCAAACAAATTAGTGTC 57.317 29.630 0.00 0.00 0.00 3.67
416 417 7.648142 TCATGACTTCAAACAAATTAGTGTCC 58.352 34.615 0.00 0.00 0.00 4.02
805 811 7.066163 GCTGGCTTATTTGGCAAAGAAAAATAT 59.934 33.333 19.29 2.91 41.92 1.28
1386 1393 2.583593 GATCTCGGCGCACAGACC 60.584 66.667 10.83 0.00 0.00 3.85
1684 1695 2.223829 CCGATGTTACGAGCTTCTGGAT 60.224 50.000 0.00 0.00 35.09 3.41
1877 1891 7.403231 AGGACCTTATGAGAATTTAGAAGTCCA 59.597 37.037 0.00 0.00 0.00 4.02
2488 2505 5.445964 TCTTTATTTAGCATTGGACCCTCC 58.554 41.667 0.00 0.00 36.96 4.30
2610 2627 1.263776 GTGCGACTCGTTCAGATCAG 58.736 55.000 0.00 0.00 0.00 2.90
3076 3608 6.943718 AGAAACGATGGAACCCACTATTTTTA 59.056 34.615 0.00 0.00 35.80 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.699134 GATCAGGTGTTCGGCCCCC 62.699 68.421 0.00 0.00 0.00 5.40
18 19 2.124695 GATCAGGTGTTCGGCCCC 60.125 66.667 0.00 0.00 0.00 5.80
19 20 0.815615 GATGATCAGGTGTTCGGCCC 60.816 60.000 0.09 0.00 0.00 5.80
22 23 1.536922 CGAGGATGATCAGGTGTTCGG 60.537 57.143 0.09 0.00 0.00 4.30
23 24 1.845266 CGAGGATGATCAGGTGTTCG 58.155 55.000 0.09 2.79 0.00 3.95
25 26 0.179000 GGCGAGGATGATCAGGTGTT 59.821 55.000 0.09 0.00 0.00 3.32
26 27 0.689080 AGGCGAGGATGATCAGGTGT 60.689 55.000 0.09 0.00 0.00 4.16
28 29 1.207791 AAAGGCGAGGATGATCAGGT 58.792 50.000 0.09 0.00 0.00 4.00
54 55 0.250295 TCGCCTTTTGACCAGGACTG 60.250 55.000 0.00 0.00 32.41 3.51
55 56 0.250338 GTCGCCTTTTGACCAGGACT 60.250 55.000 0.00 0.00 32.41 3.85
56 57 0.250338 AGTCGCCTTTTGACCAGGAC 60.250 55.000 0.00 0.00 37.04 3.85
57 58 0.472471 AAGTCGCCTTTTGACCAGGA 59.528 50.000 0.00 0.00 37.04 3.86
58 59 1.318576 AAAGTCGCCTTTTGACCAGG 58.681 50.000 0.00 0.00 37.65 4.45
66 67 4.520492 ACATCATTCTGAAAAGTCGCCTTT 59.480 37.500 0.00 0.00 42.73 3.11
67 68 4.074970 ACATCATTCTGAAAAGTCGCCTT 58.925 39.130 0.00 0.00 0.00 4.35
68 69 3.679389 ACATCATTCTGAAAAGTCGCCT 58.321 40.909 0.00 0.00 0.00 5.52
69 70 4.161333 CAACATCATTCTGAAAAGTCGCC 58.839 43.478 0.00 0.00 0.00 5.54
70 71 4.614284 CACAACATCATTCTGAAAAGTCGC 59.386 41.667 0.00 0.00 0.00 5.19
72 73 9.897744 TTTATCACAACATCATTCTGAAAAGTC 57.102 29.630 0.00 0.00 0.00 3.01
87 88 9.227490 CACGTTGTCTTTTAATTTATCACAACA 57.773 29.630 11.40 0.00 41.34 3.33
88 89 9.228636 ACACGTTGTCTTTTAATTTATCACAAC 57.771 29.630 0.00 0.00 39.05 3.32
89 90 9.790389 AACACGTTGTCTTTTAATTTATCACAA 57.210 25.926 0.00 0.00 0.00 3.33
90 91 9.440784 GAACACGTTGTCTTTTAATTTATCACA 57.559 29.630 0.00 0.00 0.00 3.58
91 92 8.615585 CGAACACGTTGTCTTTTAATTTATCAC 58.384 33.333 0.00 0.00 0.00 3.06
93 94 7.201207 GCCGAACACGTTGTCTTTTAATTTATC 60.201 37.037 0.00 0.00 0.00 1.75
94 95 6.579666 GCCGAACACGTTGTCTTTTAATTTAT 59.420 34.615 0.00 0.00 0.00 1.40
95 96 5.908499 GCCGAACACGTTGTCTTTTAATTTA 59.092 36.000 0.00 0.00 0.00 1.40
99 100 2.031930 GGCCGAACACGTTGTCTTTTAA 59.968 45.455 0.00 0.00 0.00 1.52
100 101 1.598601 GGCCGAACACGTTGTCTTTTA 59.401 47.619 0.00 0.00 0.00 1.52
102 103 1.768112 CGGCCGAACACGTTGTCTTT 61.768 55.000 24.07 0.00 0.00 2.52
103 104 2.241880 CGGCCGAACACGTTGTCTT 61.242 57.895 24.07 0.00 0.00 3.01
104 105 2.660552 CGGCCGAACACGTTGTCT 60.661 61.111 24.07 0.00 0.00 3.41
105 106 4.364409 GCGGCCGAACACGTTGTC 62.364 66.667 33.48 2.06 0.00 3.18
111 112 2.101835 TAATTCCGCGGCCGAACAC 61.102 57.895 33.48 10.38 36.29 3.32
112 113 2.101835 GTAATTCCGCGGCCGAACA 61.102 57.895 33.48 9.58 36.29 3.18
113 114 1.363885 AAGTAATTCCGCGGCCGAAC 61.364 55.000 33.48 15.94 36.29 3.95
115 116 0.528249 GTAAGTAATTCCGCGGCCGA 60.528 55.000 33.48 8.40 36.29 5.54
116 117 0.529119 AGTAAGTAATTCCGCGGCCG 60.529 55.000 24.05 24.05 0.00 6.13
117 118 1.329599 CAAGTAAGTAATTCCGCGGCC 59.670 52.381 23.51 5.33 0.00 6.13
118 119 1.329599 CCAAGTAAGTAATTCCGCGGC 59.670 52.381 23.51 5.81 0.00 6.53
119 120 1.937899 CCCAAGTAAGTAATTCCGCGG 59.062 52.381 22.12 22.12 0.00 6.46
120 121 2.350498 CACCCAAGTAAGTAATTCCGCG 59.650 50.000 0.00 0.00 0.00 6.46
121 122 3.340928 ACACCCAAGTAAGTAATTCCGC 58.659 45.455 0.00 0.00 0.00 5.54
122 123 4.630069 CAGACACCCAAGTAAGTAATTCCG 59.370 45.833 0.00 0.00 0.00 4.30
123 124 4.941873 CCAGACACCCAAGTAAGTAATTCC 59.058 45.833 0.00 0.00 0.00 3.01
124 125 5.642491 GTCCAGACACCCAAGTAAGTAATTC 59.358 44.000 0.00 0.00 0.00 2.17
128 129 2.559668 CGTCCAGACACCCAAGTAAGTA 59.440 50.000 0.00 0.00 0.00 2.24
130 131 1.616865 TCGTCCAGACACCCAAGTAAG 59.383 52.381 0.00 0.00 0.00 2.34
132 133 1.933021 ATCGTCCAGACACCCAAGTA 58.067 50.000 0.00 0.00 0.00 2.24
133 134 1.056660 AATCGTCCAGACACCCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
134 135 1.442769 CAATCGTCCAGACACCCAAG 58.557 55.000 0.00 0.00 0.00 3.61
135 136 0.605319 GCAATCGTCCAGACACCCAA 60.605 55.000 0.00 0.00 0.00 4.12
137 138 1.003839 TGCAATCGTCCAGACACCC 60.004 57.895 0.00 0.00 0.00 4.61
138 139 0.320771 ACTGCAATCGTCCAGACACC 60.321 55.000 0.00 0.00 33.40 4.16
139 140 1.461127 GAACTGCAATCGTCCAGACAC 59.539 52.381 0.00 0.00 33.40 3.67
140 141 1.069978 TGAACTGCAATCGTCCAGACA 59.930 47.619 0.00 0.00 33.40 3.41
141 142 1.728971 CTGAACTGCAATCGTCCAGAC 59.271 52.381 0.00 0.00 33.40 3.51
143 144 1.728971 GTCTGAACTGCAATCGTCCAG 59.271 52.381 0.00 0.00 35.26 3.86
144 145 1.608025 GGTCTGAACTGCAATCGTCCA 60.608 52.381 0.00 0.00 0.00 4.02
145 146 1.079503 GGTCTGAACTGCAATCGTCC 58.920 55.000 0.00 0.00 0.00 4.79
146 147 1.079503 GGGTCTGAACTGCAATCGTC 58.920 55.000 0.00 0.00 0.00 4.20
147 148 0.396435 TGGGTCTGAACTGCAATCGT 59.604 50.000 0.00 0.00 0.00 3.73
148 149 0.798776 GTGGGTCTGAACTGCAATCG 59.201 55.000 0.00 0.00 0.00 3.34
149 150 1.537202 GTGTGGGTCTGAACTGCAATC 59.463 52.381 0.00 0.00 0.00 2.67
150 151 1.143684 AGTGTGGGTCTGAACTGCAAT 59.856 47.619 0.00 0.00 0.00 3.56
151 152 0.546122 AGTGTGGGTCTGAACTGCAA 59.454 50.000 0.00 0.00 0.00 4.08
153 154 1.344763 AGTAGTGTGGGTCTGAACTGC 59.655 52.381 0.00 0.00 0.00 4.40
154 155 3.193691 CCTAGTAGTGTGGGTCTGAACTG 59.806 52.174 0.00 0.00 0.00 3.16
156 157 3.428532 TCCTAGTAGTGTGGGTCTGAAC 58.571 50.000 0.00 0.00 0.00 3.18
160 161 3.838903 CCTTTTCCTAGTAGTGTGGGTCT 59.161 47.826 0.00 0.00 0.00 3.85
161 162 3.055312 CCCTTTTCCTAGTAGTGTGGGTC 60.055 52.174 0.00 0.00 0.00 4.46
162 163 2.910977 CCCTTTTCCTAGTAGTGTGGGT 59.089 50.000 0.00 0.00 0.00 4.51
163 164 2.355818 GCCCTTTTCCTAGTAGTGTGGG 60.356 54.545 0.00 0.00 35.47 4.61
164 165 2.572104 AGCCCTTTTCCTAGTAGTGTGG 59.428 50.000 0.00 0.00 0.00 4.17
165 166 3.983044 AGCCCTTTTCCTAGTAGTGTG 57.017 47.619 0.00 0.00 0.00 3.82
167 168 7.784470 ATCTATAGCCCTTTTCCTAGTAGTG 57.216 40.000 0.00 0.00 0.00 2.74
172 173 9.454859 CCAAATTATCTATAGCCCTTTTCCTAG 57.545 37.037 0.00 0.00 0.00 3.02
173 174 9.177927 TCCAAATTATCTATAGCCCTTTTCCTA 57.822 33.333 0.00 0.00 0.00 2.94
174 175 7.945109 GTCCAAATTATCTATAGCCCTTTTCCT 59.055 37.037 0.00 0.00 0.00 3.36
175 176 7.724061 TGTCCAAATTATCTATAGCCCTTTTCC 59.276 37.037 0.00 0.00 0.00 3.13
176 177 8.568794 GTGTCCAAATTATCTATAGCCCTTTTC 58.431 37.037 0.00 0.00 0.00 2.29
178 179 7.816411 AGTGTCCAAATTATCTATAGCCCTTT 58.184 34.615 0.00 0.00 0.00 3.11
179 180 7.394144 AGTGTCCAAATTATCTATAGCCCTT 57.606 36.000 0.00 0.00 0.00 3.95
180 181 8.506196 TTAGTGTCCAAATTATCTATAGCCCT 57.494 34.615 0.00 0.00 0.00 5.19
181 182 9.167311 CATTAGTGTCCAAATTATCTATAGCCC 57.833 37.037 0.00 0.00 0.00 5.19
182 183 9.167311 CCATTAGTGTCCAAATTATCTATAGCC 57.833 37.037 0.00 0.00 0.00 3.93
183 184 8.669243 GCCATTAGTGTCCAAATTATCTATAGC 58.331 37.037 0.00 0.00 0.00 2.97
185 186 7.333423 GCGCCATTAGTGTCCAAATTATCTATA 59.667 37.037 0.00 0.00 0.00 1.31
186 187 6.149474 GCGCCATTAGTGTCCAAATTATCTAT 59.851 38.462 0.00 0.00 0.00 1.98
188 189 4.275936 GCGCCATTAGTGTCCAAATTATCT 59.724 41.667 0.00 0.00 0.00 1.98
190 191 3.951037 TGCGCCATTAGTGTCCAAATTAT 59.049 39.130 4.18 0.00 0.00 1.28
192 193 2.094752 GTGCGCCATTAGTGTCCAAATT 60.095 45.455 4.18 0.00 0.00 1.82
193 194 1.472480 GTGCGCCATTAGTGTCCAAAT 59.528 47.619 4.18 0.00 0.00 2.32
194 195 0.878416 GTGCGCCATTAGTGTCCAAA 59.122 50.000 4.18 0.00 0.00 3.28
195 196 0.958382 GGTGCGCCATTAGTGTCCAA 60.958 55.000 12.58 0.00 34.09 3.53
196 197 1.376683 GGTGCGCCATTAGTGTCCA 60.377 57.895 12.58 0.00 34.09 4.02
197 198 1.376683 TGGTGCGCCATTAGTGTCC 60.377 57.895 16.89 0.00 40.46 4.02
198 199 4.294523 TGGTGCGCCATTAGTGTC 57.705 55.556 16.89 0.00 40.46 3.67
206 207 3.285982 CACATGTGTGGTGCGCCA 61.286 61.111 16.89 16.89 42.10 5.69
222 223 3.493334 AGTATATAGTAGTGGCGCACCA 58.507 45.455 10.83 0.00 46.51 4.17
223 224 5.633830 TTAGTATATAGTAGTGGCGCACC 57.366 43.478 10.83 0.00 34.49 5.01
225 226 6.203808 CCATTAGTATATAGTAGTGGCGCA 57.796 41.667 20.32 0.00 33.88 6.09
229 230 6.034591 GTGCGCCATTAGTATATAGTAGTGG 58.965 44.000 24.81 24.81 40.19 4.00
231 232 5.713389 TGGTGCGCCATTAGTATATAGTAGT 59.287 40.000 16.89 0.00 40.46 2.73
262 263 2.389962 TTGGACACTAATGGCGTACC 57.610 50.000 0.00 0.00 32.81 3.34
264 265 5.347620 AGTATTTGGACACTAATGGCGTA 57.652 39.130 0.00 0.00 32.81 4.42
266 267 6.861065 ATTAGTATTTGGACACTAATGGCG 57.139 37.500 6.26 0.00 43.17 5.69
272 273 4.124238 GCGCCATTAGTATTTGGACACTA 58.876 43.478 0.00 0.00 34.81 2.74
273 274 2.943033 GCGCCATTAGTATTTGGACACT 59.057 45.455 0.00 0.00 34.81 3.55
274 275 2.680841 TGCGCCATTAGTATTTGGACAC 59.319 45.455 4.18 0.00 34.81 3.67
275 276 2.680841 GTGCGCCATTAGTATTTGGACA 59.319 45.455 4.18 0.00 34.81 4.02
276 277 2.032924 GGTGCGCCATTAGTATTTGGAC 59.967 50.000 12.58 0.00 34.81 4.02
278 279 2.020720 TGGTGCGCCATTAGTATTTGG 58.979 47.619 16.89 0.00 40.46 3.28
300 301 3.387091 TAGTGGCGCACCGTGGAT 61.387 61.111 10.83 0.00 39.70 3.41
302 303 2.495366 TTAGTAGTGGCGCACCGTGG 62.495 60.000 10.83 0.00 39.70 4.94
303 304 1.080366 TTAGTAGTGGCGCACCGTG 60.080 57.895 10.83 0.00 39.70 4.94
305 306 0.668096 TTGTTAGTAGTGGCGCACCG 60.668 55.000 10.83 0.00 39.70 4.94
306 307 1.734163 ATTGTTAGTAGTGGCGCACC 58.266 50.000 10.83 0.00 34.49 5.01
307 308 3.824414 AAATTGTTAGTAGTGGCGCAC 57.176 42.857 10.83 5.73 34.10 5.34
339 340 4.320641 GGTGCGCCATTACTAGTTTTGAAA 60.321 41.667 12.58 0.00 34.09 2.69
340 341 3.189702 GGTGCGCCATTACTAGTTTTGAA 59.810 43.478 12.58 0.00 34.09 2.69
341 342 2.745281 GGTGCGCCATTACTAGTTTTGA 59.255 45.455 12.58 0.00 34.09 2.69
345 346 1.406887 CCTGGTGCGCCATTACTAGTT 60.407 52.381 21.54 0.00 45.05 2.24
346 347 0.178068 CCTGGTGCGCCATTACTAGT 59.822 55.000 21.54 0.00 45.05 2.57
347 348 0.532862 CCCTGGTGCGCCATTACTAG 60.533 60.000 21.54 6.73 45.05 2.57
349 350 2.272146 CCCTGGTGCGCCATTACT 59.728 61.111 21.54 0.00 45.05 2.24
350 351 2.624674 ATCCCCTGGTGCGCCATTAC 62.625 60.000 21.54 0.00 45.05 1.89
355 356 1.481056 ATACTATCCCCTGGTGCGCC 61.481 60.000 10.11 10.11 0.00 6.53
356 357 0.396811 AATACTATCCCCTGGTGCGC 59.603 55.000 0.00 0.00 0.00 6.09
357 358 2.930826 AAATACTATCCCCTGGTGCG 57.069 50.000 0.00 0.00 0.00 5.34
358 359 3.117663 TGGAAAATACTATCCCCTGGTGC 60.118 47.826 0.00 0.00 34.68 5.01
359 360 4.788925 TGGAAAATACTATCCCCTGGTG 57.211 45.455 0.00 0.00 34.68 4.17
389 390 9.683069 GACACTAATTTGTTTGAAGTCATGATT 57.317 29.630 0.00 0.00 0.00 2.57
391 392 7.284261 TGGACACTAATTTGTTTGAAGTCATGA 59.716 33.333 0.00 0.00 0.00 3.07
392 393 7.424803 TGGACACTAATTTGTTTGAAGTCATG 58.575 34.615 8.77 0.00 0.00 3.07
394 395 7.397892 TTGGACACTAATTTGTTTGAAGTCA 57.602 32.000 8.77 0.00 0.00 3.41
395 396 8.871686 ATTTGGACACTAATTTGTTTGAAGTC 57.128 30.769 0.00 0.00 0.00 3.01
831 837 6.861065 TTACTGCTCCCGAATATTCAAATC 57.139 37.500 15.57 1.41 0.00 2.17
833 839 7.639113 AAATTACTGCTCCCGAATATTCAAA 57.361 32.000 15.57 0.00 0.00 2.69
989 996 5.364157 AGCGGTAGACTCATATCCTTTCTTT 59.636 40.000 0.00 0.00 0.00 2.52
1684 1695 8.070034 TCTACTTTACGAAGATCCCATTGTAA 57.930 34.615 0.00 0.00 36.69 2.41
1877 1891 9.237846 CAGAATTCTTTTCTTTCTTAAAGCGTT 57.762 29.630 4.86 0.00 38.39 4.84
2249 2266 7.339721 GGGTAGAATCGATATCAGTCCATAGAA 59.660 40.741 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.