Multiple sequence alignment - TraesCS5D01G376000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G376000 chr5D 100.000 3217 0 0 3523 6739 448451941 448455157 0.000000e+00 5941.0
1 TraesCS5D01G376000 chr5D 100.000 3169 0 0 1 3169 448448419 448451587 0.000000e+00 5853.0
2 TraesCS5D01G376000 chr5D 93.884 327 16 3 2710 3034 432764413 432764737 2.180000e-134 490.0
3 TraesCS5D01G376000 chr5D 78.596 285 45 9 452 736 448370199 448370467 2.500000e-39 174.0
4 TraesCS5D01G376000 chr5D 100.000 51 0 0 1337 1387 448449678 448449728 2.000000e-15 95.3
5 TraesCS5D01G376000 chr5D 100.000 51 0 0 1260 1310 448449755 448449805 2.000000e-15 95.3
6 TraesCS5D01G376000 chr5D 100.000 29 0 0 6420 6448 448455424 448455396 3.000000e-03 54.7
7 TraesCS5D01G376000 chr5A 91.708 2014 116 23 729 2714 566701004 566702994 0.000000e+00 2747.0
8 TraesCS5D01G376000 chr5A 94.804 1559 66 8 3523 5075 566703214 566704763 0.000000e+00 2416.0
9 TraesCS5D01G376000 chr5A 92.058 831 59 7 5070 5898 566704800 566705625 0.000000e+00 1162.0
10 TraesCS5D01G376000 chr5A 86.180 1042 115 17 5303 6323 566734016 566735049 0.000000e+00 1099.0
11 TraesCS5D01G376000 chr5A 88.325 788 72 7 5021 5806 566781092 566781861 0.000000e+00 928.0
12 TraesCS5D01G376000 chr5A 95.611 319 11 2 2712 3027 549204645 549204327 6.030000e-140 508.0
13 TraesCS5D01G376000 chr5A 79.184 735 87 31 5943 6632 566705754 566706467 3.710000e-122 449.0
14 TraesCS5D01G376000 chr5A 87.608 347 24 2 5333 5675 566713319 566713650 1.060000e-102 385.0
15 TraesCS5D01G376000 chr5A 90.476 294 24 3 5395 5688 566795210 566795499 1.060000e-102 385.0
16 TraesCS5D01G376000 chr5A 98.684 152 2 0 3018 3169 566702992 566703143 3.100000e-68 270.0
17 TraesCS5D01G376000 chr5A 82.060 301 38 12 6444 6736 566796386 566796678 6.750000e-60 243.0
18 TraesCS5D01G376000 chr5A 90.303 165 12 2 489 650 566700526 566700689 5.290000e-51 213.0
19 TraesCS5D01G376000 chr5A 86.331 139 13 2 5943 6078 566795722 566795857 5.450000e-31 147.0
20 TraesCS5D01G376000 chr5A 88.034 117 13 1 5164 5280 40722060 40721945 3.280000e-28 137.0
21 TraesCS5D01G376000 chr5A 91.489 94 8 0 6000 6093 566782553 566782646 5.480000e-26 130.0
22 TraesCS5D01G376000 chr5A 90.588 85 8 0 6444 6528 566706234 566706318 5.520000e-21 113.0
23 TraesCS5D01G376000 chr5B 90.188 1274 67 20 1450 2714 547653557 547654781 0.000000e+00 1607.0
24 TraesCS5D01G376000 chr5B 88.339 1252 92 25 5021 6258 547656370 547657581 0.000000e+00 1454.0
25 TraesCS5D01G376000 chr5B 85.898 1397 131 23 5021 6396 547809061 547810412 0.000000e+00 1428.0
26 TraesCS5D01G376000 chr5B 95.709 839 34 2 4238 5075 547808224 547809061 0.000000e+00 1349.0
27 TraesCS5D01G376000 chr5B 87.478 1150 91 28 5129 6258 547823881 547824997 0.000000e+00 1277.0
28 TraesCS5D01G376000 chr5B 95.663 784 26 2 4292 5075 547655595 547656370 0.000000e+00 1253.0
29 TraesCS5D01G376000 chr5B 92.946 808 43 10 548 1342 547652714 547653520 0.000000e+00 1164.0
30 TraesCS5D01G376000 chr5B 83.734 1082 140 23 5341 6395 547859241 547860313 0.000000e+00 990.0
31 TraesCS5D01G376000 chr5B 95.312 576 22 4 3523 4098 547655003 547655573 0.000000e+00 909.0
32 TraesCS5D01G376000 chr5B 93.310 568 34 3 3523 4090 547807433 547807996 0.000000e+00 835.0
33 TraesCS5D01G376000 chr5B 91.837 441 31 1 1 436 547635084 547635524 1.610000e-170 610.0
34 TraesCS5D01G376000 chr5B 88.889 441 39 3 6 436 614988622 614989062 9.950000e-148 534.0
35 TraesCS5D01G376000 chr5B 88.662 441 45 3 1 436 710806083 710805643 3.580000e-147 532.0
36 TraesCS5D01G376000 chr5B 87.121 396 44 6 448 842 547638938 547639327 6.200000e-120 442.0
37 TraesCS5D01G376000 chr5B 97.368 152 4 0 3018 3169 547654779 547654930 6.700000e-65 259.0
38 TraesCS5D01G376000 chr5B 95.395 152 6 1 3018 3169 547807215 547807365 2.430000e-59 241.0
39 TraesCS5D01G376000 chr4D 89.796 441 40 1 1 436 469040620 469040180 1.640000e-155 560.0
40 TraesCS5D01G376000 chr4D 95.847 313 10 2 2711 3021 76824689 76824378 2.810000e-138 503.0
41 TraesCS5D01G376000 chr4D 95.820 311 10 2 2712 3020 414346543 414346234 3.630000e-137 499.0
42 TraesCS5D01G376000 chr4D 89.474 114 10 2 5164 5277 169123001 169122890 7.040000e-30 143.0
43 TraesCS5D01G376000 chr2B 89.342 441 42 2 1 436 158443315 158443755 3.550000e-152 549.0
44 TraesCS5D01G376000 chr6B 88.662 441 45 4 1 436 387221579 387222019 3.580000e-147 532.0
45 TraesCS5D01G376000 chr4B 88.435 441 46 1 1 436 1870144 1870584 1.660000e-145 527.0
46 TraesCS5D01G376000 chr4B 83.688 141 18 5 5151 5291 28196871 28197006 1.970000e-25 128.0
47 TraesCS5D01G376000 chr1D 88.584 438 45 1 4 436 345401915 345401478 1.660000e-145 527.0
48 TraesCS5D01G376000 chr1D 95.652 322 12 1 2714 3033 103031927 103032248 3.600000e-142 516.0
49 TraesCS5D01G376000 chr3D 88.155 439 47 4 3 436 588883883 588884321 1.000000e-142 518.0
50 TraesCS5D01G376000 chr7D 97.068 307 7 1 2714 3018 539381773 539382079 3.600000e-142 516.0
51 TraesCS5D01G376000 chr2D 96.463 311 7 2 2714 3020 213696995 213697305 1.680000e-140 510.0
52 TraesCS5D01G376000 chr1A 96.141 311 10 1 2712 3020 420381093 420381403 2.170000e-139 507.0
53 TraesCS5D01G376000 chr6A 95.820 311 11 1 2712 3020 588602431 588602121 1.010000e-137 501.0
54 TraesCS5D01G376000 chr7B 89.167 120 9 3 5164 5280 741242928 741243046 5.450000e-31 147.0
55 TraesCS5D01G376000 chrUn 90.090 111 10 1 5161 5271 3061875 3061984 7.040000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G376000 chr5D 448448419 448455157 6738 False 2996.150000 5941 100.000000 1 6739 4 chr5D.!!$F3 6738
1 TraesCS5D01G376000 chr5A 566734016 566735049 1033 False 1099.000000 1099 86.180000 5303 6323 1 chr5A.!!$F2 1020
2 TraesCS5D01G376000 chr5A 566700526 566706467 5941 False 1052.857143 2747 91.047000 489 6632 7 chr5A.!!$F3 6143
3 TraesCS5D01G376000 chr5A 566781092 566782646 1554 False 529.000000 928 89.907000 5021 6093 2 chr5A.!!$F4 1072
4 TraesCS5D01G376000 chr5A 566795210 566796678 1468 False 258.333333 385 86.289000 5395 6736 3 chr5A.!!$F5 1341
5 TraesCS5D01G376000 chr5B 547823881 547824997 1116 False 1277.000000 1277 87.478000 5129 6258 1 chr5B.!!$F1 1129
6 TraesCS5D01G376000 chr5B 547652714 547657581 4867 False 1107.666667 1607 93.302667 548 6258 6 chr5B.!!$F5 5710
7 TraesCS5D01G376000 chr5B 547859241 547860313 1072 False 990.000000 990 83.734000 5341 6395 1 chr5B.!!$F2 1054
8 TraesCS5D01G376000 chr5B 547807215 547810412 3197 False 963.250000 1428 92.578000 3018 6396 4 chr5B.!!$F6 3378
9 TraesCS5D01G376000 chr5B 547635084 547639327 4243 False 526.000000 610 89.479000 1 842 2 chr5B.!!$F4 841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 125 0.104304 GTATGTCCCCGATCGCACTT 59.896 55.000 10.32 6.65 0.00 3.16 F
479 3886 0.106569 TCCAGGCCCTATTCGTCGTA 60.107 55.000 0.00 0.00 0.00 3.43 F
1238 4919 1.066454 CGGTCCCAAAGGTGTGTTTTC 59.934 52.381 0.00 0.00 0.00 2.29 F
2722 6414 0.329596 CAGCTTGGTAAGGCCTCCTT 59.670 55.000 5.23 3.40 46.63 3.36 F
2825 6517 0.552848 GGGATGGAGATGCCCTTTGA 59.447 55.000 0.00 0.00 38.85 2.69 F
4098 7790 0.857935 GCTCTATGCTGCTAGCGTTG 59.142 55.000 10.77 4.03 46.26 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1033 4702 0.106521 GAGGAGGATGAGGAGCAAGC 59.893 60.000 0.00 0.00 0.00 4.01 R
1579 5262 1.180029 AGGGAGTGCATGACAAATGC 58.820 50.000 0.00 3.37 44.76 3.56 R
2806 6498 0.552848 TCAAAGGGCATCTCCATCCC 59.447 55.000 0.00 0.00 40.36 3.85 R
4449 8223 0.034186 TTTGAGCCATACCCAGCTGG 60.034 55.000 26.87 26.87 40.11 4.85 R
4793 8575 2.693074 GCCCACAAAGAAAGAAACAGGA 59.307 45.455 0.00 0.00 0.00 3.86 R
5854 9712 1.026718 CCTGAACCCATTCACCGCTC 61.027 60.000 0.00 0.00 40.01 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.251642 CCCGGGCGCTTTACTATGC 61.252 63.158 8.08 0.00 0.00 3.14
35 41 6.085458 CGCTTTACTATGCTTCATTTATTGCG 59.915 38.462 0.00 0.00 0.00 4.85
51 57 2.325583 TGCGTCAAACACCTCTTTCT 57.674 45.000 0.00 0.00 0.00 2.52
119 125 0.104304 GTATGTCCCCGATCGCACTT 59.896 55.000 10.32 6.65 0.00 3.16
125 131 1.490693 CCCCGATCGCACTTTCATCG 61.491 60.000 10.32 0.00 39.31 3.84
147 153 7.417496 TCGAGAGATACGAAATTATCTTCGA 57.583 36.000 12.25 15.55 42.53 3.71
157 163 3.634568 ATTATCTTCGAGTGCTCCGAG 57.365 47.619 0.00 0.00 37.35 4.63
175 181 9.477484 TGCTCCGAGAAGTTTCTTATAATATTC 57.523 33.333 0.00 0.00 37.73 1.75
179 185 9.130312 CCGAGAAGTTTCTTATAATATTCGGAG 57.870 37.037 0.00 0.00 37.73 4.63
208 214 7.923414 ACAATTTTAGGTTCTCATGTCCTAC 57.077 36.000 0.00 0.00 34.15 3.18
233 239 2.695666 TGTACCCTCATCTTGCTCTAGC 59.304 50.000 0.00 0.00 42.50 3.42
249 255 6.058183 TGCTCTAGCTGGATTATCTTTTTCC 58.942 40.000 0.00 0.00 42.66 3.13
290 296 5.132648 AGCTATCATGTGGAAGAATTGGGTA 59.867 40.000 0.00 0.00 0.00 3.69
303 309 6.803587 AGAATTGGGTATTATCATCCCCTT 57.196 37.500 0.00 0.00 40.41 3.95
312 318 4.453480 TTATCATCCCCTTGGACAATCC 57.547 45.455 0.00 0.00 45.58 3.01
329 335 6.374417 ACAATCCTAGAAACCTTTGCTCTA 57.626 37.500 0.00 0.00 0.00 2.43
347 353 2.687935 TCTAAGCGCCCATTTCATTTCC 59.312 45.455 2.29 0.00 0.00 3.13
372 378 4.389374 CTCTCTCAAAAGGGCTTGTAACA 58.611 43.478 0.00 0.00 0.00 2.41
382 388 2.420687 GGGCTTGTAACATCCTCTCTGG 60.421 54.545 0.00 0.00 37.10 3.86
384 390 2.355108 GCTTGTAACATCCTCTCTGGCA 60.355 50.000 0.00 0.00 35.26 4.92
400 406 6.450545 TCTCTGGCACATTCTTAATATCTCG 58.549 40.000 0.00 0.00 38.20 4.04
441 447 5.332707 GGATTGATTCCGCTTTCAACTAAC 58.667 41.667 0.00 0.00 34.87 2.34
445 3852 6.137794 TGATTCCGCTTTCAACTAACAAAA 57.862 33.333 0.00 0.00 0.00 2.44
446 3853 6.565234 TGATTCCGCTTTCAACTAACAAAAA 58.435 32.000 0.00 0.00 0.00 1.94
469 3876 1.504275 ATTGCTCAGTTCCAGGCCCT 61.504 55.000 0.00 0.00 0.00 5.19
470 3877 0.840288 TTGCTCAGTTCCAGGCCCTA 60.840 55.000 0.00 0.00 0.00 3.53
471 3878 0.621571 TGCTCAGTTCCAGGCCCTAT 60.622 55.000 0.00 0.00 0.00 2.57
472 3879 0.548510 GCTCAGTTCCAGGCCCTATT 59.451 55.000 0.00 0.00 0.00 1.73
473 3880 1.475930 GCTCAGTTCCAGGCCCTATTC 60.476 57.143 0.00 0.00 0.00 1.75
474 3881 0.830648 TCAGTTCCAGGCCCTATTCG 59.169 55.000 0.00 0.00 0.00 3.34
479 3886 0.106569 TCCAGGCCCTATTCGTCGTA 60.107 55.000 0.00 0.00 0.00 3.43
486 3893 2.475487 GCCCTATTCGTCGTATTGCTTC 59.525 50.000 0.00 0.00 0.00 3.86
487 3894 3.057734 CCCTATTCGTCGTATTGCTTCC 58.942 50.000 0.00 0.00 0.00 3.46
492 3899 1.480219 CGTCGTATTGCTTCCGGCTC 61.480 60.000 0.00 0.00 42.39 4.70
508 3915 1.228124 CTCCTCGTTGTGGCCCAAA 60.228 57.895 0.00 0.00 34.07 3.28
528 3938 2.120909 CCCACCGCCAGCCTAAATG 61.121 63.158 0.00 0.00 0.00 2.32
611 4023 1.216710 CTCAGTCGCCCACTCTTCC 59.783 63.158 0.00 0.00 30.26 3.46
702 4114 4.873129 CCCACGGCCATCTCGTCG 62.873 72.222 2.24 0.00 38.94 5.12
757 4411 4.947147 GCTGCCACCGGTCCAACA 62.947 66.667 2.59 0.00 0.00 3.33
874 4543 2.040278 CTGCCTCACCTCTCCCCT 59.960 66.667 0.00 0.00 0.00 4.79
1197 4869 3.512516 GGCATCCACAAGCTCGCC 61.513 66.667 0.00 0.00 0.00 5.54
1238 4919 1.066454 CGGTCCCAAAGGTGTGTTTTC 59.934 52.381 0.00 0.00 0.00 2.29
1330 5013 9.283768 CTGGATAATGTTTGCTATGGTGTATAA 57.716 33.333 0.00 0.00 0.00 0.98
1367 5050 8.895932 ATCACTGTAATCGTAATTTCTTTTGC 57.104 30.769 0.00 0.00 0.00 3.68
1368 5051 8.094798 TCACTGTAATCGTAATTTCTTTTGCT 57.905 30.769 0.00 0.00 0.00 3.91
1369 5052 8.015087 TCACTGTAATCGTAATTTCTTTTGCTG 58.985 33.333 0.00 0.00 0.00 4.41
1370 5053 7.803189 CACTGTAATCGTAATTTCTTTTGCTGT 59.197 33.333 0.00 0.00 0.00 4.40
1371 5054 8.995220 ACTGTAATCGTAATTTCTTTTGCTGTA 58.005 29.630 0.00 0.00 0.00 2.74
1372 5055 9.478019 CTGTAATCGTAATTTCTTTTGCTGTAG 57.522 33.333 0.00 0.00 0.00 2.74
1373 5056 8.995220 TGTAATCGTAATTTCTTTTGCTGTAGT 58.005 29.630 0.00 0.00 0.00 2.73
1408 5091 7.073088 TGGATTCTTTTTCCCCTTTTTATTGGT 59.927 33.333 0.00 0.00 31.87 3.67
1464 5147 4.501071 TGTTCCTGTAGAGCCGTAAATTC 58.499 43.478 0.00 0.00 0.00 2.17
1485 5168 6.746745 TTCGTTGTTATCTTTGGTAATCCC 57.253 37.500 0.00 0.00 0.00 3.85
1520 5203 6.968263 TGAACATTCAGTATTTGTTGGGAA 57.032 33.333 0.00 0.00 33.92 3.97
1579 5262 8.723311 TGTAATTGTTCTCCGGTTTTGTATAAG 58.277 33.333 0.00 0.00 0.00 1.73
1637 5320 8.602424 TGAAGAAATAGTCCAAACTCCTAATCA 58.398 33.333 0.00 0.00 36.92 2.57
1665 5348 6.346096 ACTGTTGTGTCAGTATTGTAACTGT 58.654 36.000 4.11 0.00 45.31 3.55
1711 5394 8.514594 TCTTGCGAATTTGATAGTGAAATTCTT 58.485 29.630 13.32 0.00 43.28 2.52
1752 5435 7.816945 ATGGATCGTTTTTGCTCTTTTTATG 57.183 32.000 0.00 0.00 0.00 1.90
1877 5560 0.608582 CCTCTGCCTGCTTGCTCTTT 60.609 55.000 0.00 0.00 0.00 2.52
1920 5603 7.541091 CCATTTGTTCATTGATATAGATGCTGC 59.459 37.037 0.00 0.00 0.00 5.25
2137 5820 4.437239 CCATGCTACTTCAAGAGGTACAG 58.563 47.826 0.00 0.00 0.00 2.74
2151 5834 7.771361 TCAAGAGGTACAGTGTTCAATGTTTTA 59.229 33.333 10.92 0.00 0.00 1.52
2215 5898 5.221204 TGCAAACATGTCAAACAGATAGCAA 60.221 36.000 0.00 0.00 0.00 3.91
2250 5933 0.960364 CTGTTGGGGATGGAACCACG 60.960 60.000 0.00 0.00 36.27 4.94
2328 6011 2.510613 GGTGCTAACCCAGTTGCTTTA 58.489 47.619 0.00 0.00 41.04 1.85
2391 6074 7.286313 GGATCTTGAAGACAAAATCTATCCCT 58.714 38.462 0.00 0.00 36.27 4.20
2468 6151 4.954875 TCATGGATGGAAAAACACCAAAC 58.045 39.130 0.00 0.00 40.93 2.93
2475 6158 6.426633 GGATGGAAAAACACCAAACAATAAGG 59.573 38.462 0.00 0.00 40.93 2.69
2587 6270 5.606348 TGGAACTGCACCTTACAAATTTT 57.394 34.783 0.00 0.00 0.00 1.82
2610 6293 3.541632 AGTAATAAAGGGATGCACACCG 58.458 45.455 0.00 0.00 0.00 4.94
2620 6305 2.486203 GGATGCACACCGTCATGTTTTA 59.514 45.455 0.00 0.00 0.00 1.52
2634 6319 8.638565 CCGTCATGTTTTATTTTCATTTCTGTC 58.361 33.333 0.00 0.00 0.00 3.51
2674 6359 5.125257 TGGAATGAAATACGCACACATTCAT 59.875 36.000 16.21 8.52 44.55 2.57
2696 6388 7.490840 TCATTTGAAATGTTGAACACAGTCAT 58.509 30.769 16.62 0.00 39.40 3.06
2705 6397 7.889589 TGTTGAACACAGTCATATTAGTCAG 57.110 36.000 0.00 0.00 0.00 3.51
2711 6403 5.046304 ACACAGTCATATTAGTCAGCTTGGT 60.046 40.000 0.00 0.00 0.00 3.67
2712 6404 6.154534 ACACAGTCATATTAGTCAGCTTGGTA 59.845 38.462 0.00 0.00 0.00 3.25
2713 6405 7.041721 CACAGTCATATTAGTCAGCTTGGTAA 58.958 38.462 0.00 0.00 0.00 2.85
2714 6406 7.223582 CACAGTCATATTAGTCAGCTTGGTAAG 59.776 40.741 0.00 0.00 0.00 2.34
2715 6407 6.703607 CAGTCATATTAGTCAGCTTGGTAAGG 59.296 42.308 0.00 0.00 0.00 2.69
2716 6408 5.467063 GTCATATTAGTCAGCTTGGTAAGGC 59.533 44.000 0.00 0.00 0.00 4.35
2717 6409 2.781681 TTAGTCAGCTTGGTAAGGCC 57.218 50.000 0.00 0.00 37.90 5.19
2718 6410 1.952621 TAGTCAGCTTGGTAAGGCCT 58.047 50.000 0.00 0.00 38.35 5.19
2719 6411 0.615850 AGTCAGCTTGGTAAGGCCTC 59.384 55.000 5.23 0.00 38.35 4.70
2720 6412 0.393132 GTCAGCTTGGTAAGGCCTCC 60.393 60.000 5.23 4.14 38.35 4.30
2721 6413 0.547712 TCAGCTTGGTAAGGCCTCCT 60.548 55.000 5.23 0.00 38.35 3.69
2722 6414 0.329596 CAGCTTGGTAAGGCCTCCTT 59.670 55.000 5.23 3.40 46.63 3.36
2723 6415 1.076438 AGCTTGGTAAGGCCTCCTTT 58.924 50.000 5.23 0.00 41.69 3.11
2724 6416 1.177401 GCTTGGTAAGGCCTCCTTTG 58.823 55.000 5.23 0.00 41.69 2.77
2725 6417 1.839424 CTTGGTAAGGCCTCCTTTGG 58.161 55.000 5.23 0.00 41.69 3.28
2726 6418 1.075536 CTTGGTAAGGCCTCCTTTGGT 59.924 52.381 5.23 0.00 41.69 3.67
2727 6419 1.154430 TGGTAAGGCCTCCTTTGGTT 58.846 50.000 5.23 0.00 41.69 3.67
2728 6420 1.074889 TGGTAAGGCCTCCTTTGGTTC 59.925 52.381 5.23 0.00 41.69 3.62
2729 6421 1.074889 GGTAAGGCCTCCTTTGGTTCA 59.925 52.381 5.23 0.00 41.69 3.18
2730 6422 2.291605 GGTAAGGCCTCCTTTGGTTCAT 60.292 50.000 5.23 0.00 41.69 2.57
2731 6423 3.053917 GGTAAGGCCTCCTTTGGTTCATA 60.054 47.826 5.23 0.00 41.69 2.15
2732 6424 3.372440 AAGGCCTCCTTTGGTTCATAG 57.628 47.619 5.23 0.00 41.69 2.23
2733 6425 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
2734 6426 1.410224 GGCCTCCTTTGGTTCATAGGG 60.410 57.143 0.00 0.00 34.20 3.53
2735 6427 1.285078 GCCTCCTTTGGTTCATAGGGT 59.715 52.381 4.94 0.00 34.20 4.34
2736 6428 2.508300 GCCTCCTTTGGTTCATAGGGTA 59.492 50.000 4.94 0.00 34.20 3.69
2737 6429 3.433740 GCCTCCTTTGGTTCATAGGGTAG 60.434 52.174 4.94 0.00 34.20 3.18
2738 6430 3.136626 CCTCCTTTGGTTCATAGGGTAGG 59.863 52.174 4.94 2.50 34.20 3.18
2739 6431 4.037927 CTCCTTTGGTTCATAGGGTAGGA 58.962 47.826 4.94 0.00 34.20 2.94
2740 6432 4.440808 TCCTTTGGTTCATAGGGTAGGAA 58.559 43.478 4.94 0.00 34.20 3.36
2741 6433 5.043762 TCCTTTGGTTCATAGGGTAGGAAT 58.956 41.667 4.94 0.00 34.20 3.01
2742 6434 5.132144 TCCTTTGGTTCATAGGGTAGGAATC 59.868 44.000 4.94 0.00 34.20 2.52
2743 6435 5.104109 CCTTTGGTTCATAGGGTAGGAATCA 60.104 44.000 0.00 0.00 37.76 2.57
2744 6436 6.410853 CCTTTGGTTCATAGGGTAGGAATCAT 60.411 42.308 0.00 0.00 39.07 2.45
2745 6437 7.202186 CCTTTGGTTCATAGGGTAGGAATCATA 60.202 40.741 0.00 0.00 39.07 2.15
2746 6438 6.935240 TGGTTCATAGGGTAGGAATCATAG 57.065 41.667 0.00 0.00 34.99 2.23
2747 6439 5.785423 TGGTTCATAGGGTAGGAATCATAGG 59.215 44.000 0.00 0.00 34.99 2.57
2748 6440 6.023603 GGTTCATAGGGTAGGAATCATAGGA 58.976 44.000 0.00 0.00 30.47 2.94
2749 6441 6.500751 GGTTCATAGGGTAGGAATCATAGGAA 59.499 42.308 0.00 0.00 30.47 3.36
2750 6442 7.182930 GGTTCATAGGGTAGGAATCATAGGAAT 59.817 40.741 0.00 0.00 30.47 3.01
2751 6443 9.268282 GTTCATAGGGTAGGAATCATAGGAATA 57.732 37.037 0.00 0.00 30.67 1.75
2752 6444 9.494055 TTCATAGGGTAGGAATCATAGGAATAG 57.506 37.037 0.00 0.00 0.00 1.73
2753 6445 8.856974 TCATAGGGTAGGAATCATAGGAATAGA 58.143 37.037 0.00 0.00 0.00 1.98
2754 6446 9.494055 CATAGGGTAGGAATCATAGGAATAGAA 57.506 37.037 0.00 0.00 0.00 2.10
2756 6448 8.814448 AGGGTAGGAATCATAGGAATAGAAAA 57.186 34.615 0.00 0.00 0.00 2.29
2757 6449 8.885346 AGGGTAGGAATCATAGGAATAGAAAAG 58.115 37.037 0.00 0.00 0.00 2.27
2758 6450 8.661345 GGGTAGGAATCATAGGAATAGAAAAGT 58.339 37.037 0.00 0.00 0.00 2.66
2759 6451 9.713713 GGTAGGAATCATAGGAATAGAAAAGTC 57.286 37.037 0.00 0.00 0.00 3.01
2771 6463 9.844257 AGGAATAGAAAAGTCATAGGAAATGAG 57.156 33.333 0.00 0.00 0.00 2.90
2772 6464 9.838339 GGAATAGAAAAGTCATAGGAAATGAGA 57.162 33.333 0.00 0.00 0.00 3.27
2776 6468 8.729805 AGAAAAGTCATAGGAAATGAGATGAC 57.270 34.615 5.86 5.86 45.57 3.06
2777 6469 8.324306 AGAAAAGTCATAGGAAATGAGATGACA 58.676 33.333 14.37 0.00 46.94 3.58
2778 6470 9.118300 GAAAAGTCATAGGAAATGAGATGACAT 57.882 33.333 14.37 1.96 46.94 3.06
2779 6471 8.447924 AAAGTCATAGGAAATGAGATGACATG 57.552 34.615 14.37 0.00 46.94 3.21
2780 6472 7.134362 AGTCATAGGAAATGAGATGACATGT 57.866 36.000 14.37 0.00 46.94 3.21
2781 6473 8.255111 AGTCATAGGAAATGAGATGACATGTA 57.745 34.615 14.37 0.00 46.94 2.29
2782 6474 8.878211 AGTCATAGGAAATGAGATGACATGTAT 58.122 33.333 14.37 0.00 46.94 2.29
2783 6475 9.149225 GTCATAGGAAATGAGATGACATGTATC 57.851 37.037 0.00 2.87 44.91 2.24
2784 6476 9.097946 TCATAGGAAATGAGATGACATGTATCT 57.902 33.333 14.05 14.05 37.59 1.98
2785 6477 9.368674 CATAGGAAATGAGATGACATGTATCTC 57.631 37.037 24.04 24.04 46.82 2.75
2795 6487 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
2796 6488 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
2797 6489 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
2798 6490 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
2799 6491 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
2800 6492 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
2815 6507 5.623551 ATGAGTAGGAATAGGGATGGAGA 57.376 43.478 0.00 0.00 0.00 3.71
2816 6508 5.623551 TGAGTAGGAATAGGGATGGAGAT 57.376 43.478 0.00 0.00 0.00 2.75
2817 6509 5.336945 TGAGTAGGAATAGGGATGGAGATG 58.663 45.833 0.00 0.00 0.00 2.90
2818 6510 4.100373 AGTAGGAATAGGGATGGAGATGC 58.900 47.826 0.00 0.00 0.00 3.91
2819 6511 2.273619 AGGAATAGGGATGGAGATGCC 58.726 52.381 0.00 0.00 40.43 4.40
2820 6512 1.283321 GGAATAGGGATGGAGATGCCC 59.717 57.143 0.00 0.00 41.04 5.36
2824 6516 3.122369 GGGATGGAGATGCCCTTTG 57.878 57.895 0.00 0.00 38.85 2.77
2825 6517 0.552848 GGGATGGAGATGCCCTTTGA 59.447 55.000 0.00 0.00 38.85 2.69
2826 6518 1.146566 GGGATGGAGATGCCCTTTGAT 59.853 52.381 0.00 0.00 38.85 2.57
2827 6519 2.425392 GGGATGGAGATGCCCTTTGATT 60.425 50.000 0.00 0.00 38.85 2.57
2828 6520 2.889678 GGATGGAGATGCCCTTTGATTC 59.110 50.000 0.00 0.00 34.97 2.52
2829 6521 3.559069 GATGGAGATGCCCTTTGATTCA 58.441 45.455 0.00 0.00 34.97 2.57
2830 6522 2.726821 TGGAGATGCCCTTTGATTCAC 58.273 47.619 0.00 0.00 34.97 3.18
2831 6523 2.041485 TGGAGATGCCCTTTGATTCACA 59.959 45.455 0.00 0.00 34.97 3.58
2832 6524 3.294214 GGAGATGCCCTTTGATTCACAT 58.706 45.455 0.00 0.00 0.00 3.21
2833 6525 3.317430 GGAGATGCCCTTTGATTCACATC 59.683 47.826 6.23 6.23 35.31 3.06
2834 6526 3.949754 GAGATGCCCTTTGATTCACATCA 59.050 43.478 13.54 0.00 37.67 3.07
2835 6527 4.543689 AGATGCCCTTTGATTCACATCAT 58.456 39.130 13.54 2.83 39.28 2.45
2836 6528 5.698104 AGATGCCCTTTGATTCACATCATA 58.302 37.500 13.54 0.00 39.28 2.15
2837 6529 5.768662 AGATGCCCTTTGATTCACATCATAG 59.231 40.000 13.54 1.71 39.28 2.23
2865 6557 7.630242 TTTTTCCATTGAGTCTAGGCTAATG 57.370 36.000 0.00 8.01 0.00 1.90
2866 6558 5.957771 TTCCATTGAGTCTAGGCTAATGT 57.042 39.130 17.62 0.00 0.00 2.71
2867 6559 5.957771 TCCATTGAGTCTAGGCTAATGTT 57.042 39.130 17.62 0.00 0.00 2.71
2868 6560 6.313519 TCCATTGAGTCTAGGCTAATGTTT 57.686 37.500 17.62 0.00 0.00 2.83
2869 6561 7.432148 TCCATTGAGTCTAGGCTAATGTTTA 57.568 36.000 17.62 7.18 0.00 2.01
2870 6562 8.034313 TCCATTGAGTCTAGGCTAATGTTTAT 57.966 34.615 17.62 0.00 0.00 1.40
2871 6563 8.494433 TCCATTGAGTCTAGGCTAATGTTTATT 58.506 33.333 17.62 0.00 0.00 1.40
2872 6564 9.125026 CCATTGAGTCTAGGCTAATGTTTATTT 57.875 33.333 17.62 0.00 0.00 1.40
2875 6567 8.732746 TGAGTCTAGGCTAATGTTTATTTTCC 57.267 34.615 0.00 0.00 0.00 3.13
2876 6568 8.548877 TGAGTCTAGGCTAATGTTTATTTTCCT 58.451 33.333 0.00 0.00 33.86 3.36
2890 6582 8.748412 TGTTTATTTTCCTATGAAATGTGGAGG 58.252 33.333 0.00 0.00 40.08 4.30
2891 6583 8.966868 GTTTATTTTCCTATGAAATGTGGAGGA 58.033 33.333 0.00 0.00 40.08 3.71
2892 6584 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
2894 6586 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
2895 6587 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
2896 6588 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
2897 6589 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
2898 6590 6.270927 TCCTATGAAATGTGGAGGATAGGAAG 59.729 42.308 0.00 0.00 38.86 3.46
2899 6591 6.270927 CCTATGAAATGTGGAGGATAGGAAGA 59.729 42.308 0.00 0.00 36.16 2.87
2900 6592 6.581388 ATGAAATGTGGAGGATAGGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
2901 6593 6.581388 TGAAATGTGGAGGATAGGAAGAAT 57.419 37.500 0.00 0.00 0.00 2.40
2902 6594 6.973642 TGAAATGTGGAGGATAGGAAGAATT 58.026 36.000 0.00 0.00 0.00 2.17
2903 6595 7.056635 TGAAATGTGGAGGATAGGAAGAATTC 58.943 38.462 0.00 0.00 46.67 2.17
2937 6629 4.946160 AGGATTCCATTCCTACAAACCA 57.054 40.909 5.29 0.00 44.50 3.67
2938 6630 5.269554 AGGATTCCATTCCTACAAACCAA 57.730 39.130 5.29 0.00 44.50 3.67
2939 6631 5.650283 AGGATTCCATTCCTACAAACCAAA 58.350 37.500 5.29 0.00 44.50 3.28
2940 6632 5.716703 AGGATTCCATTCCTACAAACCAAAG 59.283 40.000 5.29 0.00 44.50 2.77
2941 6633 5.105351 GGATTCCATTCCTACAAACCAAAGG 60.105 44.000 0.00 0.00 32.68 3.11
2942 6634 3.773560 TCCATTCCTACAAACCAAAGGG 58.226 45.455 0.00 0.00 41.29 3.95
2943 6635 2.233676 CCATTCCTACAAACCAAAGGGC 59.766 50.000 0.00 0.00 37.90 5.19
2944 6636 3.165071 CATTCCTACAAACCAAAGGGCT 58.835 45.455 0.00 0.00 37.90 5.19
2945 6637 2.579410 TCCTACAAACCAAAGGGCTC 57.421 50.000 0.00 0.00 37.90 4.70
2946 6638 2.062636 TCCTACAAACCAAAGGGCTCT 58.937 47.619 0.00 0.00 37.90 4.09
2947 6639 3.253220 TCCTACAAACCAAAGGGCTCTA 58.747 45.455 0.00 0.00 37.90 2.43
2948 6640 3.653836 TCCTACAAACCAAAGGGCTCTAA 59.346 43.478 0.00 0.00 37.90 2.10
2949 6641 4.291249 TCCTACAAACCAAAGGGCTCTAAT 59.709 41.667 0.00 0.00 37.90 1.73
2950 6642 4.399303 CCTACAAACCAAAGGGCTCTAATG 59.601 45.833 0.00 0.00 37.90 1.90
2951 6643 3.165071 ACAAACCAAAGGGCTCTAATGG 58.835 45.455 15.17 15.17 37.90 3.16
2952 6644 3.181423 ACAAACCAAAGGGCTCTAATGGA 60.181 43.478 21.93 0.00 37.90 3.41
2953 6645 4.026052 CAAACCAAAGGGCTCTAATGGAT 58.974 43.478 21.93 9.86 37.90 3.41
2954 6646 4.337264 AACCAAAGGGCTCTAATGGATT 57.663 40.909 21.93 11.21 37.90 3.01
2955 6647 4.337264 ACCAAAGGGCTCTAATGGATTT 57.663 40.909 21.93 0.48 37.90 2.17
2956 6648 4.687976 ACCAAAGGGCTCTAATGGATTTT 58.312 39.130 21.93 0.15 37.90 1.82
2957 6649 5.093677 ACCAAAGGGCTCTAATGGATTTTT 58.906 37.500 21.93 0.00 37.90 1.94
2994 6686 9.621239 ATCCTATCCTATGAAATTCCTACAAGA 57.379 33.333 0.00 0.00 0.00 3.02
2995 6687 9.621239 TCCTATCCTATGAAATTCCTACAAGAT 57.379 33.333 0.00 0.00 0.00 2.40
2999 6691 8.337118 TCCTATGAAATTCCTACAAGATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
3000 6692 8.432805 TCCTATGAAATTCCTACAAGATTCCTC 58.567 37.037 0.00 0.00 0.00 3.71
3001 6693 8.435982 CCTATGAAATTCCTACAAGATTCCTCT 58.564 37.037 0.00 0.00 0.00 3.69
3002 6694 9.844257 CTATGAAATTCCTACAAGATTCCTCTT 57.156 33.333 0.00 0.00 42.59 2.85
3005 6697 9.449719 TGAAATTCCTACAAGATTCCTCTTAAC 57.550 33.333 0.00 0.00 39.78 2.01
3006 6698 8.809468 AAATTCCTACAAGATTCCTCTTAACC 57.191 34.615 0.00 0.00 39.78 2.85
3007 6699 6.945636 TTCCTACAAGATTCCTCTTAACCA 57.054 37.500 0.00 0.00 39.78 3.67
3008 6700 6.945636 TCCTACAAGATTCCTCTTAACCAA 57.054 37.500 0.00 0.00 39.78 3.67
3009 6701 7.324388 TCCTACAAGATTCCTCTTAACCAAA 57.676 36.000 0.00 0.00 39.78 3.28
3010 6702 7.394816 TCCTACAAGATTCCTCTTAACCAAAG 58.605 38.462 0.00 0.00 39.78 2.77
3011 6703 6.599638 CCTACAAGATTCCTCTTAACCAAAGG 59.400 42.308 0.00 0.00 39.78 3.11
3012 6704 6.200878 ACAAGATTCCTCTTAACCAAAGGA 57.799 37.500 0.00 0.00 39.78 3.36
3013 6705 6.241645 ACAAGATTCCTCTTAACCAAAGGAG 58.758 40.000 0.00 0.00 39.78 3.69
3014 6706 5.443230 AGATTCCTCTTAACCAAAGGAGG 57.557 43.478 0.00 0.00 40.21 4.30
3015 6707 3.434940 TTCCTCTTAACCAAAGGAGGC 57.565 47.619 0.00 0.00 40.21 4.70
3016 6708 1.633945 TCCTCTTAACCAAAGGAGGCC 59.366 52.381 0.00 0.00 34.26 5.19
3141 6833 7.227314 CCTGATGGAATAATCAAAATCGAGTCA 59.773 37.037 0.00 0.00 36.16 3.41
3580 7272 5.124297 TGGCATCATCTCAACACATAAACAG 59.876 40.000 0.00 0.00 0.00 3.16
3603 7295 7.093201 ACAGAGGCCATGTCATTTGATAATTTT 60.093 33.333 5.01 0.00 0.00 1.82
3607 7299 9.382275 AGGCCATGTCATTTGATAATTTTAAAC 57.618 29.630 5.01 0.00 0.00 2.01
3634 7326 8.951787 AATTTACACTCCAAAAAGTTTAACCC 57.048 30.769 0.00 0.00 0.00 4.11
3643 7335 7.580007 TCCAAAAAGTTTAACCCTCTCTTAGT 58.420 34.615 0.00 0.00 0.00 2.24
3912 7604 6.770303 TGTTGATTATTGCCGAGGATATTTCA 59.230 34.615 0.00 0.00 0.00 2.69
4071 7763 9.145865 GTAGATTTACTATTGCTAAGCTCCATC 57.854 37.037 0.00 0.00 33.39 3.51
4075 7767 2.246719 ATTGCTAAGCTCCATCCGTC 57.753 50.000 0.00 0.00 0.00 4.79
4076 7768 1.195115 TTGCTAAGCTCCATCCGTCT 58.805 50.000 0.00 0.00 0.00 4.18
4098 7790 0.857935 GCTCTATGCTGCTAGCGTTG 59.142 55.000 10.77 4.03 46.26 4.10
4210 7906 9.421806 CATACATTTTTATCAGTTGCTTTTCCA 57.578 29.630 0.00 0.00 0.00 3.53
4222 7918 7.231317 TCAGTTGCTTTTCCACTCTAATGAATT 59.769 33.333 0.00 0.00 0.00 2.17
4290 8062 2.897271 TTATGGTGTGTGGCTCCATT 57.103 45.000 6.20 0.00 46.08 3.16
4303 8075 5.304614 TGTGGCTCCATTAGGACTATACTTC 59.695 44.000 0.00 0.00 39.61 3.01
4449 8223 5.163713 GGGTCTTCAAGCAATTACATCTGAC 60.164 44.000 0.00 0.00 0.00 3.51
4579 8353 7.891183 AGAAAGATCTAGAGGAGACAACAAGTA 59.109 37.037 0.00 0.00 36.87 2.24
4650 8424 3.125316 GTGTAGCAGTTATCAAGGTGTGC 59.875 47.826 0.00 0.00 0.00 4.57
4664 8438 2.299013 AGGTGTGCGAGTCATTCACTAA 59.701 45.455 8.15 0.00 34.41 2.24
4707 8488 8.329203 AGTTCTTCCTACTGAATGATGTTTTC 57.671 34.615 0.00 0.00 31.06 2.29
4970 8753 6.426937 GTGGTGTAACATATGTTGAACTGTCT 59.573 38.462 27.62 3.92 39.98 3.41
5075 8858 7.792374 TCCATGCATTTACTCTTGTATCTTC 57.208 36.000 0.00 0.00 0.00 2.87
5093 8928 5.426689 TCTTCTCTCTGCAATATGGTTGT 57.573 39.130 0.00 0.00 0.00 3.32
5108 8943 4.620589 TGGTTGTCCAATCATTGCATTT 57.379 36.364 0.00 0.00 41.25 2.32
5120 8955 1.430479 TTGCATTTGCCGCTGATTTG 58.570 45.000 0.00 0.00 41.18 2.32
5121 8956 0.317799 TGCATTTGCCGCTGATTTGT 59.682 45.000 0.00 0.00 41.18 2.83
5122 8957 0.717224 GCATTTGCCGCTGATTTGTG 59.283 50.000 0.00 0.00 34.31 3.33
5123 8958 1.936203 GCATTTGCCGCTGATTTGTGT 60.936 47.619 0.00 0.00 34.31 3.72
5124 8959 2.670789 GCATTTGCCGCTGATTTGTGTA 60.671 45.455 0.00 0.00 34.31 2.90
5243 9084 4.585955 TCTAGATACATCCGTTTCAGCC 57.414 45.455 0.00 0.00 0.00 4.85
5245 9086 3.627395 AGATACATCCGTTTCAGCCAA 57.373 42.857 0.00 0.00 0.00 4.52
5246 9087 3.535561 AGATACATCCGTTTCAGCCAAG 58.464 45.455 0.00 0.00 0.00 3.61
5262 9103 7.439157 TCAGCCAAGAATTAATATGAATCGG 57.561 36.000 0.00 0.00 0.00 4.18
5351 9194 3.379240 CTCACTCATTAGAGCATCCGTG 58.621 50.000 0.00 0.00 46.09 4.94
5540 9385 2.080693 GTTGGGTACAATGCGATGACA 58.919 47.619 0.00 0.00 39.13 3.58
5543 9388 2.170397 TGGGTACAATGCGATGACAGAT 59.830 45.455 0.00 0.00 0.00 2.90
5570 9415 0.609131 AAGACCTTGTTGATGCCGGG 60.609 55.000 2.18 0.00 0.00 5.73
5733 9578 4.562394 CGCCGTTGCAGATAAATCAAAATT 59.438 37.500 0.00 0.00 37.32 1.82
5760 9605 4.718774 AGGTCTGAGCAATTCTTATCCTGA 59.281 41.667 9.78 0.00 0.00 3.86
5845 9703 3.616076 CGTGAAGGACAGCTCTTCTCATT 60.616 47.826 13.15 0.00 40.73 2.57
5854 9712 6.922957 GGACAGCTCTTCTCATTATTGTCTAG 59.077 42.308 0.00 0.00 35.33 2.43
5939 9854 9.944376 TGATATCAACTATATCTAGGTTTTGCC 57.056 33.333 1.98 0.00 44.72 4.52
5996 10204 7.004555 TCATTATCTCTGTTTGTAGTGGTGT 57.995 36.000 0.00 0.00 0.00 4.16
5998 10206 7.387673 TCATTATCTCTGTTTGTAGTGGTGTTG 59.612 37.037 0.00 0.00 0.00 3.33
6007 10382 6.259167 TGTTTGTAGTGGTGTTGTTAGATGTC 59.741 38.462 0.00 0.00 0.00 3.06
6009 10384 5.919755 TGTAGTGGTGTTGTTAGATGTCAA 58.080 37.500 0.00 0.00 0.00 3.18
6028 10403 2.892852 CAAGTGCAGATTCTCCCCAAAA 59.107 45.455 0.00 0.00 0.00 2.44
6039 10414 7.983484 CAGATTCTCCCCAAAAAGAAAATATGG 59.017 37.037 0.00 0.00 35.29 2.74
6046 10421 6.212589 CCCCAAAAAGAAAATATGGTAGGTGT 59.787 38.462 0.00 0.00 0.00 4.16
6107 10647 6.844696 AACATAGTAATGATTACACTGGCG 57.155 37.500 16.80 2.80 38.60 5.69
6135 10675 4.082841 TGTCATGTCGATTTCCCAAATGTG 60.083 41.667 0.00 0.00 0.00 3.21
6137 10677 3.913548 TGTCGATTTCCCAAATGTGTG 57.086 42.857 0.00 0.00 0.00 3.82
6143 10686 4.201851 CGATTTCCCAAATGTGTGAGCTAG 60.202 45.833 0.00 0.00 0.00 3.42
6156 10699 2.027653 GTGAGCTAGCTCTTGTCCCTTT 60.028 50.000 37.42 5.33 43.12 3.11
6157 10700 2.639839 TGAGCTAGCTCTTGTCCCTTTT 59.360 45.455 37.42 5.12 43.12 2.27
6158 10701 3.006247 GAGCTAGCTCTTGTCCCTTTTG 58.994 50.000 32.98 0.00 39.80 2.44
6166 10714 4.700213 GCTCTTGTCCCTTTTGTTATGCTA 59.300 41.667 0.00 0.00 0.00 3.49
6181 10729 0.395586 TGCTAATCATGTGTGGCCCC 60.396 55.000 0.00 0.00 0.00 5.80
6185 10733 0.409092 AATCATGTGTGGCCCCTTGA 59.591 50.000 0.00 2.70 0.00 3.02
6241 10792 2.030457 CGCCGTGTTTATAAGCAAGAGG 59.970 50.000 14.95 13.50 0.00 3.69
6266 10817 6.691754 TGCTGAAGTCAAGTAAAATGTTCA 57.308 33.333 0.00 0.00 0.00 3.18
6274 10825 7.927048 AGTCAAGTAAAATGTTCAGTTGGTAC 58.073 34.615 0.00 0.00 0.00 3.34
6288 10864 2.745037 GTACGGGCAGTTGGGACA 59.255 61.111 0.00 0.00 0.00 4.02
6300 10876 4.549458 CAGTTGGGACACATTGATTTCAC 58.451 43.478 0.00 0.00 39.29 3.18
6312 10888 7.177216 ACACATTGATTTCACCTGTATCATGTT 59.823 33.333 0.00 0.00 0.00 2.71
6325 10902 5.478407 TGTATCATGTTGTCTGTACCACTG 58.522 41.667 0.00 0.00 0.00 3.66
6344 10929 1.156736 GTGTAGTGGTGTCATGTGCC 58.843 55.000 0.00 0.00 0.00 5.01
6359 10945 9.398170 GTGTCATGTGCCATATTTTTCATATAC 57.602 33.333 0.00 0.00 0.00 1.47
6385 10971 5.687285 CAGAATTTTGTAACAAGCACAGGAC 59.313 40.000 0.00 0.00 0.00 3.85
6397 10983 3.281240 CAGGACAACTGGCATGCC 58.719 61.111 30.54 30.54 43.70 4.40
6403 10989 2.550639 GGACAACTGGCATGCCATTTTT 60.551 45.455 38.47 30.48 46.15 1.94
6404 10990 2.738314 GACAACTGGCATGCCATTTTTC 59.262 45.455 38.47 32.98 46.15 2.29
6405 10991 2.104451 ACAACTGGCATGCCATTTTTCA 59.896 40.909 38.47 15.21 46.15 2.69
6407 10993 4.020396 ACAACTGGCATGCCATTTTTCATA 60.020 37.500 38.47 13.63 46.15 2.15
6408 10994 5.120399 CAACTGGCATGCCATTTTTCATAT 58.880 37.500 38.47 14.30 46.15 1.78
6409 10995 6.127111 ACAACTGGCATGCCATTTTTCATATA 60.127 34.615 38.47 12.30 46.15 0.86
6410 10996 5.846203 ACTGGCATGCCATTTTTCATATAC 58.154 37.500 38.47 6.88 46.15 1.47
6411 10997 4.869215 TGGCATGCCATTTTTCATATACG 58.131 39.130 35.59 0.00 41.89 3.06
6412 10998 3.674753 GGCATGCCATTTTTCATATACGC 59.325 43.478 32.08 0.00 35.81 4.42
6413 10999 4.297510 GCATGCCATTTTTCATATACGCA 58.702 39.130 6.36 0.00 0.00 5.24
6414 11000 4.383649 GCATGCCATTTTTCATATACGCAG 59.616 41.667 6.36 0.00 0.00 5.18
6415 11001 5.761003 CATGCCATTTTTCATATACGCAGA 58.239 37.500 0.00 0.00 0.00 4.26
6416 11002 5.826601 TGCCATTTTTCATATACGCAGAA 57.173 34.783 0.00 0.00 0.00 3.02
6417 11003 6.389830 TGCCATTTTTCATATACGCAGAAT 57.610 33.333 0.00 0.00 0.00 2.40
6418 11004 6.804677 TGCCATTTTTCATATACGCAGAATT 58.195 32.000 0.00 0.00 0.00 2.17
6419 11005 7.264221 TGCCATTTTTCATATACGCAGAATTT 58.736 30.769 0.00 0.00 0.00 1.82
6420 11006 7.763528 TGCCATTTTTCATATACGCAGAATTTT 59.236 29.630 0.00 0.00 0.00 1.82
6421 11007 8.057742 GCCATTTTTCATATACGCAGAATTTTG 58.942 33.333 0.00 0.00 0.00 2.44
6422 11008 9.086336 CCATTTTTCATATACGCAGAATTTTGT 57.914 29.630 0.00 0.00 0.00 2.83
6425 11011 8.894409 TTTTCATATACGCAGAATTTTGTCTG 57.106 30.769 0.00 0.00 46.58 3.51
6426 11012 6.603237 TCATATACGCAGAATTTTGTCTGG 57.397 37.500 4.49 0.00 44.43 3.86
6427 11013 3.764885 ATACGCAGAATTTTGTCTGGC 57.235 42.857 4.49 0.00 44.43 4.85
6428 11014 1.609208 ACGCAGAATTTTGTCTGGCT 58.391 45.000 4.49 0.00 44.43 4.75
6429 11015 1.956477 ACGCAGAATTTTGTCTGGCTT 59.044 42.857 4.49 0.00 44.43 4.35
6430 11016 2.030805 ACGCAGAATTTTGTCTGGCTTC 60.031 45.455 4.49 0.00 44.43 3.86
6431 11017 2.030893 CGCAGAATTTTGTCTGGCTTCA 60.031 45.455 4.49 0.00 44.43 3.02
6432 11018 3.311966 GCAGAATTTTGTCTGGCTTCAC 58.688 45.455 4.49 0.00 44.43 3.18
6433 11019 3.005155 GCAGAATTTTGTCTGGCTTCACT 59.995 43.478 4.49 0.00 44.43 3.41
6434 11020 4.216257 GCAGAATTTTGTCTGGCTTCACTA 59.784 41.667 4.49 0.00 44.43 2.74
6435 11021 5.105997 GCAGAATTTTGTCTGGCTTCACTAT 60.106 40.000 4.49 0.00 44.43 2.12
6436 11022 6.094048 GCAGAATTTTGTCTGGCTTCACTATA 59.906 38.462 4.49 0.00 44.43 1.31
6437 11023 7.467623 CAGAATTTTGTCTGGCTTCACTATAC 58.532 38.462 0.00 0.00 41.21 1.47
6438 11024 7.119699 CAGAATTTTGTCTGGCTTCACTATACA 59.880 37.037 0.00 0.00 41.21 2.29
6439 11025 6.743575 ATTTTGTCTGGCTTCACTATACAC 57.256 37.500 0.00 0.00 0.00 2.90
6440 11026 5.483685 TTTGTCTGGCTTCACTATACACT 57.516 39.130 0.00 0.00 0.00 3.55
6441 11027 6.599356 TTTGTCTGGCTTCACTATACACTA 57.401 37.500 0.00 0.00 0.00 2.74
6442 11028 5.578005 TGTCTGGCTTCACTATACACTAC 57.422 43.478 0.00 0.00 0.00 2.73
6508 11094 1.008079 GCAGTGTGTTGCCTCTTGC 60.008 57.895 0.00 0.00 38.13 4.01
6521 11140 2.866762 GCCTCTTGCTTGATACCTAACG 59.133 50.000 0.00 0.00 36.87 3.18
6530 11149 5.580691 TGCTTGATACCTAACGAATGTGAAG 59.419 40.000 0.00 0.00 0.00 3.02
6533 11152 7.277098 GCTTGATACCTAACGAATGTGAAGTAA 59.723 37.037 0.00 0.00 0.00 2.24
6557 11187 4.148891 CGAACACTATTTTCTGTTTCGGC 58.851 43.478 0.00 0.00 30.59 5.54
6596 11227 2.737783 TGTAATTTCCGCGTTGAACGAT 59.262 40.909 23.12 2.15 46.05 3.73
6597 11228 2.520686 AATTTCCGCGTTGAACGATC 57.479 45.000 23.12 3.41 46.05 3.69
6603 11234 1.336877 CGCGTTGAACGATCTCTCAA 58.663 50.000 23.12 3.02 46.05 3.02
6605 11236 2.345641 CGCGTTGAACGATCTCTCAAAT 59.654 45.455 23.12 0.00 46.05 2.32
6635 11266 7.911362 CGTAAGCTGATTACTCCTTACTTAC 57.089 40.000 13.24 0.00 41.46 2.34
6640 11272 9.740710 AAGCTGATTACTCCTTACTTACAAAAT 57.259 29.630 0.00 0.00 0.00 1.82
6641 11273 9.740710 AGCTGATTACTCCTTACTTACAAAATT 57.259 29.630 0.00 0.00 0.00 1.82
6722 11354 6.506147 TGATGACAATTGAAGAACACAAAGG 58.494 36.000 13.59 0.00 0.00 3.11
6729 11361 5.818136 TTGAAGAACACAAAGGACAGAAG 57.182 39.130 0.00 0.00 0.00 2.85
6731 11363 5.684704 TGAAGAACACAAAGGACAGAAGAT 58.315 37.500 0.00 0.00 0.00 2.40
6732 11364 5.528690 TGAAGAACACAAAGGACAGAAGATG 59.471 40.000 0.00 0.00 0.00 2.90
6734 11366 5.684704 AGAACACAAAGGACAGAAGATGAA 58.315 37.500 0.00 0.00 0.00 2.57
6735 11367 5.529060 AGAACACAAAGGACAGAAGATGAAC 59.471 40.000 0.00 0.00 0.00 3.18
6736 11368 5.041191 ACACAAAGGACAGAAGATGAACT 57.959 39.130 0.00 0.00 0.00 3.01
6737 11369 4.818546 ACACAAAGGACAGAAGATGAACTG 59.181 41.667 0.00 0.00 39.65 3.16
6738 11370 3.817647 ACAAAGGACAGAAGATGAACTGC 59.182 43.478 0.00 0.00 37.61 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 6.746822 TGTTTGACGCAATAAATGAAGCATAG 59.253 34.615 0.00 0.00 0.00 2.23
22 23 5.460646 AGGTGTTTGACGCAATAAATGAAG 58.539 37.500 0.00 0.00 0.00 3.02
35 41 6.377327 TTCATTGAGAAAGAGGTGTTTGAC 57.623 37.500 0.00 0.00 32.05 3.18
51 57 2.151202 GTTGTCGGCTCCTTTCATTGA 58.849 47.619 0.00 0.00 0.00 2.57
60 66 0.321653 AATGAGGTGTTGTCGGCTCC 60.322 55.000 0.00 0.00 0.00 4.70
65 71 3.677121 CAGAAGAGAATGAGGTGTTGTCG 59.323 47.826 0.00 0.00 0.00 4.35
119 125 9.613957 GAAGATAATTTCGTATCTCTCGATGAA 57.386 33.333 0.00 0.00 39.44 2.57
138 144 2.640184 TCTCGGAGCACTCGAAGATAA 58.360 47.619 0.00 0.00 36.15 1.75
146 152 2.734276 AGAAACTTCTCGGAGCACTC 57.266 50.000 0.00 0.00 29.94 3.51
147 153 4.810191 ATAAGAAACTTCTCGGAGCACT 57.190 40.909 0.00 0.00 36.28 4.40
175 181 6.816640 TGAGAACCTAAAATTGTACATCTCCG 59.183 38.462 12.45 0.00 31.95 4.63
179 185 8.398665 GGACATGAGAACCTAAAATTGTACATC 58.601 37.037 0.00 0.00 0.00 3.06
208 214 4.521146 AGAGCAAGATGAGGGTACAATTG 58.479 43.478 3.24 3.24 0.00 2.32
256 262 6.204852 TCCACATGATAGCTAATGGGAAAT 57.795 37.500 8.92 0.00 27.93 2.17
272 278 7.822161 TGATAATACCCAATTCTTCCACATG 57.178 36.000 0.00 0.00 0.00 3.21
303 309 4.079253 GCAAAGGTTTCTAGGATTGTCCA 58.921 43.478 0.00 0.00 39.61 4.02
312 318 3.062774 GCGCTTAGAGCAAAGGTTTCTAG 59.937 47.826 0.00 0.00 42.58 2.43
329 335 1.478105 GAGGAAATGAAATGGGCGCTT 59.522 47.619 7.64 0.00 0.00 4.68
347 353 2.039613 ACAAGCCCTTTTGAGAGAGGAG 59.960 50.000 0.00 0.00 34.91 3.69
372 378 5.643421 ATTAAGAATGTGCCAGAGAGGAT 57.357 39.130 0.00 0.00 41.22 3.24
382 388 7.700322 TCTGAACGAGATATTAAGAATGTGC 57.300 36.000 0.00 0.00 0.00 4.57
446 3853 2.037641 GGCCTGGAACTGAGCAATTTTT 59.962 45.455 0.00 0.00 0.00 1.94
447 3854 1.620323 GGCCTGGAACTGAGCAATTTT 59.380 47.619 0.00 0.00 0.00 1.82
451 3858 0.840288 TAGGGCCTGGAACTGAGCAA 60.840 55.000 18.53 0.00 0.00 3.91
459 3866 0.974010 ACGACGAATAGGGCCTGGAA 60.974 55.000 18.53 0.00 0.00 3.53
462 3869 2.404215 CAATACGACGAATAGGGCCTG 58.596 52.381 18.53 0.69 0.00 4.85
469 3876 2.734670 CCGGAAGCAATACGACGAATA 58.265 47.619 0.00 0.00 37.68 1.75
470 3877 1.567504 CCGGAAGCAATACGACGAAT 58.432 50.000 0.00 0.00 37.68 3.34
471 3878 1.079875 GCCGGAAGCAATACGACGAA 61.080 55.000 5.05 0.00 37.68 3.85
472 3879 1.517694 GCCGGAAGCAATACGACGA 60.518 57.895 5.05 0.00 37.68 4.20
473 3880 3.003478 GCCGGAAGCAATACGACG 58.997 61.111 5.05 0.00 37.68 5.12
492 3899 2.919494 GCTTTGGGCCACAACGAGG 61.919 63.158 5.23 0.00 39.19 4.63
545 3955 3.447742 GATTTCCACCAATTCGATTGCC 58.552 45.455 0.00 0.00 38.92 4.52
611 4023 2.438434 GGCGGAGTGGTCAATGGG 60.438 66.667 0.00 0.00 0.00 4.00
694 4106 1.546961 AACCAGAGGAACGACGAGAT 58.453 50.000 0.00 0.00 0.00 2.75
700 4112 0.316204 GTCGGAAACCAGAGGAACGA 59.684 55.000 0.00 0.00 0.00 3.85
854 4523 1.610673 GGGAGAGGTGAGGCAGTCA 60.611 63.158 0.00 0.00 0.00 3.41
1033 4702 0.106521 GAGGAGGATGAGGAGCAAGC 59.893 60.000 0.00 0.00 0.00 4.01
1238 4919 1.538950 GACCAAGAAGGAAGCAAGCAG 59.461 52.381 0.00 0.00 41.22 4.24
1284 4966 6.640518 TCCAGGAGTAATACTACAGCAAAAG 58.359 40.000 5.32 0.00 29.09 2.27
1303 4986 4.889409 ACACCATAGCAAACATTATCCAGG 59.111 41.667 0.00 0.00 0.00 4.45
1343 5026 8.015087 CAGCAAAAGAAATTACGATTACAGTGA 58.985 33.333 0.00 0.00 0.00 3.41
1344 5027 7.803189 ACAGCAAAAGAAATTACGATTACAGTG 59.197 33.333 0.00 0.00 0.00 3.66
1345 5028 7.871853 ACAGCAAAAGAAATTACGATTACAGT 58.128 30.769 0.00 0.00 0.00 3.55
1346 5029 9.478019 CTACAGCAAAAGAAATTACGATTACAG 57.522 33.333 0.00 0.00 0.00 2.74
1347 5030 8.995220 ACTACAGCAAAAGAAATTACGATTACA 58.005 29.630 0.00 0.00 0.00 2.41
1356 5039 9.740710 AGGAGTAATACTACAGCAAAAGAAATT 57.259 29.630 5.32 0.00 29.09 1.82
1357 5040 9.167311 CAGGAGTAATACTACAGCAAAAGAAAT 57.833 33.333 5.32 0.00 29.09 2.17
1358 5041 7.606456 CCAGGAGTAATACTACAGCAAAAGAAA 59.394 37.037 5.32 0.00 29.09 2.52
1359 5042 7.038587 TCCAGGAGTAATACTACAGCAAAAGAA 60.039 37.037 5.32 0.00 29.09 2.52
1360 5043 6.439375 TCCAGGAGTAATACTACAGCAAAAGA 59.561 38.462 5.32 0.00 29.09 2.52
1361 5044 6.640518 TCCAGGAGTAATACTACAGCAAAAG 58.359 40.000 5.32 0.00 29.09 2.27
1362 5045 6.614694 TCCAGGAGTAATACTACAGCAAAA 57.385 37.500 5.32 0.00 29.09 2.44
1363 5046 6.808321 ATCCAGGAGTAATACTACAGCAAA 57.192 37.500 5.32 0.00 29.09 3.68
1364 5047 6.611642 AGAATCCAGGAGTAATACTACAGCAA 59.388 38.462 5.32 0.00 29.09 3.91
1365 5048 6.136857 AGAATCCAGGAGTAATACTACAGCA 58.863 40.000 5.32 0.00 29.09 4.41
1366 5049 6.658188 AGAATCCAGGAGTAATACTACAGC 57.342 41.667 5.32 0.00 29.09 4.40
1367 5050 9.892130 AAAAAGAATCCAGGAGTAATACTACAG 57.108 33.333 5.32 0.00 29.09 2.74
1368 5051 9.886132 GAAAAAGAATCCAGGAGTAATACTACA 57.114 33.333 5.32 0.00 29.09 2.74
1369 5052 9.327628 GGAAAAAGAATCCAGGAGTAATACTAC 57.672 37.037 0.00 0.00 36.92 2.73
1370 5053 8.491958 GGGAAAAAGAATCCAGGAGTAATACTA 58.508 37.037 0.00 0.00 38.80 1.82
1371 5054 7.347252 GGGAAAAAGAATCCAGGAGTAATACT 58.653 38.462 0.00 0.00 38.80 2.12
1372 5055 6.546403 GGGGAAAAAGAATCCAGGAGTAATAC 59.454 42.308 0.00 0.00 38.80 1.89
1373 5056 6.450352 AGGGGAAAAAGAATCCAGGAGTAATA 59.550 38.462 0.00 0.00 38.80 0.98
1374 5057 5.256389 AGGGGAAAAAGAATCCAGGAGTAAT 59.744 40.000 0.00 0.00 38.80 1.89
1375 5058 4.606255 AGGGGAAAAAGAATCCAGGAGTAA 59.394 41.667 0.00 0.00 38.80 2.24
1376 5059 4.183916 AGGGGAAAAAGAATCCAGGAGTA 58.816 43.478 0.00 0.00 38.80 2.59
1377 5060 2.996742 AGGGGAAAAAGAATCCAGGAGT 59.003 45.455 0.00 0.00 38.80 3.85
1378 5061 3.746792 AGGGGAAAAAGAATCCAGGAG 57.253 47.619 0.00 0.00 38.80 3.69
1379 5062 4.485653 AAAGGGGAAAAAGAATCCAGGA 57.514 40.909 0.00 0.00 38.80 3.86
1380 5063 5.567037 AAAAAGGGGAAAAAGAATCCAGG 57.433 39.130 0.00 0.00 38.80 4.45
1381 5064 7.607607 CCAATAAAAAGGGGAAAAAGAATCCAG 59.392 37.037 0.00 0.00 38.80 3.86
1408 5091 5.127491 CAGTTTCCACCTTTGTACCAGTTA 58.873 41.667 0.00 0.00 0.00 2.24
1464 5147 4.944930 TGGGGATTACCAAAGATAACAACG 59.055 41.667 0.00 0.00 42.91 4.10
1509 5192 7.223584 CCAAAAGAATAAGGTTCCCAACAAAT 58.776 34.615 0.00 0.00 0.00 2.32
1511 5194 5.454045 GCCAAAAGAATAAGGTTCCCAACAA 60.454 40.000 0.00 0.00 0.00 2.83
1520 5203 7.962441 ACTAAATTGTGCCAAAAGAATAAGGT 58.038 30.769 0.00 0.00 0.00 3.50
1525 5208 5.928264 GCAGACTAAATTGTGCCAAAAGAAT 59.072 36.000 0.00 0.00 0.00 2.40
1579 5262 1.180029 AGGGAGTGCATGACAAATGC 58.820 50.000 0.00 3.37 44.76 3.56
1665 5348 6.671190 CAAGAACATTACAGTTGCAAGATGA 58.329 36.000 16.43 0.00 0.00 2.92
1711 5394 7.054124 ACGATCCATTGGAAGCTTTAGAATTA 58.946 34.615 9.98 0.00 34.34 1.40
1920 5603 6.127814 GGCATATATGATCCCAACAACATGAG 60.128 42.308 17.10 0.00 0.00 2.90
1980 5663 5.111293 CAAACCTTTGTGTTCTCAGCAATT 58.889 37.500 0.00 0.00 33.59 2.32
2071 5754 2.158957 TGGAAGTTCTATAGCCTTGGCG 60.159 50.000 5.95 0.00 0.00 5.69
2250 5933 1.268539 CGGGCCAAAATAATCGCTGTC 60.269 52.381 4.39 0.00 0.00 3.51
2328 6011 2.967887 AGCTTTGTCAATGCCCTTTCTT 59.032 40.909 17.32 0.00 32.41 2.52
2391 6074 6.428083 TTTATGTCCTCCTTTGTACTCACA 57.572 37.500 0.00 0.00 0.00 3.58
2468 6151 6.259608 CAGTAGTTGCTTCTCCATCCTTATTG 59.740 42.308 0.00 0.00 0.00 1.90
2475 6158 3.196685 AGTCCAGTAGTTGCTTCTCCATC 59.803 47.826 0.00 0.00 0.00 3.51
2587 6270 5.120399 CGGTGTGCATCCCTTTATTACTTA 58.880 41.667 0.00 0.00 0.00 2.24
2610 6293 9.474920 TGGACAGAAATGAAAATAAAACATGAC 57.525 29.630 0.00 0.00 0.00 3.06
2638 6323 9.134734 GCGTATTTCATTCCACAATTAAAGAAA 57.865 29.630 0.00 0.00 0.00 2.52
2643 6328 6.804295 GTGTGCGTATTTCATTCCACAATTAA 59.196 34.615 0.00 0.00 35.30 1.40
2696 6388 4.037927 AGGCCTTACCAAGCTGACTAATA 58.962 43.478 0.00 0.00 43.14 0.98
2705 6397 1.177401 CAAAGGAGGCCTTACCAAGC 58.823 55.000 6.77 0.00 43.92 4.01
2711 6403 3.202151 CCTATGAACCAAAGGAGGCCTTA 59.798 47.826 6.77 0.00 43.92 2.69
2713 6405 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
2714 6406 1.410224 CCCTATGAACCAAAGGAGGCC 60.410 57.143 0.00 0.00 31.64 5.19
2715 6407 1.285078 ACCCTATGAACCAAAGGAGGC 59.715 52.381 0.00 0.00 31.64 4.70
2716 6408 3.136626 CCTACCCTATGAACCAAAGGAGG 59.863 52.174 0.00 0.00 31.64 4.30
2717 6409 4.037927 TCCTACCCTATGAACCAAAGGAG 58.962 47.826 0.00 0.00 31.64 3.69
2718 6410 4.083080 TCCTACCCTATGAACCAAAGGA 57.917 45.455 0.00 0.00 31.64 3.36
2719 6411 4.855298 TTCCTACCCTATGAACCAAAGG 57.145 45.455 0.00 0.00 0.00 3.11
2720 6412 6.001449 TGATTCCTACCCTATGAACCAAAG 57.999 41.667 0.00 0.00 0.00 2.77
2721 6413 6.590656 ATGATTCCTACCCTATGAACCAAA 57.409 37.500 0.00 0.00 0.00 3.28
2722 6414 6.272324 CCTATGATTCCTACCCTATGAACCAA 59.728 42.308 0.00 0.00 0.00 3.67
2723 6415 5.785423 CCTATGATTCCTACCCTATGAACCA 59.215 44.000 0.00 0.00 0.00 3.67
2724 6416 6.023603 TCCTATGATTCCTACCCTATGAACC 58.976 44.000 0.00 0.00 0.00 3.62
2725 6417 7.554959 TTCCTATGATTCCTACCCTATGAAC 57.445 40.000 0.00 0.00 0.00 3.18
2726 6418 9.494055 CTATTCCTATGATTCCTACCCTATGAA 57.506 37.037 0.00 0.00 0.00 2.57
2727 6419 8.856974 TCTATTCCTATGATTCCTACCCTATGA 58.143 37.037 0.00 0.00 0.00 2.15
2728 6420 9.494055 TTCTATTCCTATGATTCCTACCCTATG 57.506 37.037 0.00 0.00 0.00 2.23
2730 6422 9.907819 TTTTCTATTCCTATGATTCCTACCCTA 57.092 33.333 0.00 0.00 0.00 3.53
2731 6423 8.814448 TTTTCTATTCCTATGATTCCTACCCT 57.186 34.615 0.00 0.00 0.00 4.34
2732 6424 8.661345 ACTTTTCTATTCCTATGATTCCTACCC 58.339 37.037 0.00 0.00 0.00 3.69
2733 6425 9.713713 GACTTTTCTATTCCTATGATTCCTACC 57.286 37.037 0.00 0.00 0.00 3.18
2745 6437 9.844257 CTCATTTCCTATGACTTTTCTATTCCT 57.156 33.333 0.00 0.00 0.00 3.36
2746 6438 9.838339 TCTCATTTCCTATGACTTTTCTATTCC 57.162 33.333 0.00 0.00 0.00 3.01
2750 6442 9.823647 GTCATCTCATTTCCTATGACTTTTCTA 57.176 33.333 0.00 0.00 43.07 2.10
2751 6443 8.324306 TGTCATCTCATTTCCTATGACTTTTCT 58.676 33.333 13.59 0.00 45.40 2.52
2752 6444 8.498054 TGTCATCTCATTTCCTATGACTTTTC 57.502 34.615 13.59 0.00 45.40 2.29
2753 6445 8.900781 CATGTCATCTCATTTCCTATGACTTTT 58.099 33.333 13.59 0.00 45.40 2.27
2754 6446 8.051535 ACATGTCATCTCATTTCCTATGACTTT 58.948 33.333 13.59 1.75 45.40 2.66
2755 6447 7.571919 ACATGTCATCTCATTTCCTATGACTT 58.428 34.615 13.59 6.42 45.40 3.01
2756 6448 7.134362 ACATGTCATCTCATTTCCTATGACT 57.866 36.000 13.59 0.19 45.40 3.41
2757 6449 9.149225 GATACATGTCATCTCATTTCCTATGAC 57.851 37.037 0.00 7.23 45.40 3.06
2758 6450 9.097946 AGATACATGTCATCTCATTTCCTATGA 57.902 33.333 0.00 0.00 0.00 2.15
2759 6451 9.368674 GAGATACATGTCATCTCATTTCCTATG 57.631 37.037 24.95 0.00 45.17 2.23
2769 6461 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
2770 6462 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
2771 6463 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
2772 6464 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
2773 6465 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
2774 6466 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
2791 6483 6.736581 TCTCCATCCCTATTCCTACTCATAG 58.263 44.000 0.00 0.00 0.00 2.23
2792 6484 6.736561 TCTCCATCCCTATTCCTACTCATA 57.263 41.667 0.00 0.00 0.00 2.15
2793 6485 5.623551 TCTCCATCCCTATTCCTACTCAT 57.376 43.478 0.00 0.00 0.00 2.90
2794 6486 5.336945 CATCTCCATCCCTATTCCTACTCA 58.663 45.833 0.00 0.00 0.00 3.41
2795 6487 4.161377 GCATCTCCATCCCTATTCCTACTC 59.839 50.000 0.00 0.00 0.00 2.59
2796 6488 4.100373 GCATCTCCATCCCTATTCCTACT 58.900 47.826 0.00 0.00 0.00 2.57
2797 6489 3.198853 GGCATCTCCATCCCTATTCCTAC 59.801 52.174 0.00 0.00 34.01 3.18
2798 6490 3.454858 GGCATCTCCATCCCTATTCCTA 58.545 50.000 0.00 0.00 34.01 2.94
2799 6491 2.273619 GGCATCTCCATCCCTATTCCT 58.726 52.381 0.00 0.00 34.01 3.36
2800 6492 1.283321 GGGCATCTCCATCCCTATTCC 59.717 57.143 0.00 0.00 37.08 3.01
2801 6493 2.797177 GGGCATCTCCATCCCTATTC 57.203 55.000 0.00 0.00 37.08 1.75
2806 6498 0.552848 TCAAAGGGCATCTCCATCCC 59.447 55.000 0.00 0.00 40.36 3.85
2807 6499 2.671896 ATCAAAGGGCATCTCCATCC 57.328 50.000 0.00 0.00 36.21 3.51
2808 6500 3.317430 GTGAATCAAAGGGCATCTCCATC 59.683 47.826 0.00 0.00 36.21 3.51
2809 6501 3.294214 GTGAATCAAAGGGCATCTCCAT 58.706 45.455 0.00 0.00 36.21 3.41
2810 6502 2.041485 TGTGAATCAAAGGGCATCTCCA 59.959 45.455 0.00 0.00 36.21 3.86
2811 6503 2.726821 TGTGAATCAAAGGGCATCTCC 58.273 47.619 0.00 0.00 0.00 3.71
2812 6504 3.949754 TGATGTGAATCAAAGGGCATCTC 59.050 43.478 10.68 0.00 35.22 2.75
2813 6505 3.972133 TGATGTGAATCAAAGGGCATCT 58.028 40.909 10.68 0.00 35.22 2.90
2814 6506 4.931661 ATGATGTGAATCAAAGGGCATC 57.068 40.909 4.45 4.45 33.83 3.91
2815 6507 4.831155 CCTATGATGTGAATCAAAGGGCAT 59.169 41.667 0.00 0.00 33.83 4.40
2816 6508 4.079844 TCCTATGATGTGAATCAAAGGGCA 60.080 41.667 0.00 0.00 33.83 5.36
2817 6509 4.464008 TCCTATGATGTGAATCAAAGGGC 58.536 43.478 0.00 0.00 33.83 5.19
2818 6510 7.592885 AAATCCTATGATGTGAATCAAAGGG 57.407 36.000 0.00 0.00 33.83 3.95
2841 6533 7.175104 ACATTAGCCTAGACTCAATGGAAAAA 58.825 34.615 0.00 0.00 32.20 1.94
2842 6534 6.721318 ACATTAGCCTAGACTCAATGGAAAA 58.279 36.000 0.00 0.00 32.20 2.29
2843 6535 6.313519 ACATTAGCCTAGACTCAATGGAAA 57.686 37.500 0.00 0.00 32.20 3.13
2844 6536 5.957771 ACATTAGCCTAGACTCAATGGAA 57.042 39.130 0.00 0.00 32.20 3.53
2845 6537 5.957771 AACATTAGCCTAGACTCAATGGA 57.042 39.130 0.00 0.00 32.20 3.41
2846 6538 8.682936 AATAAACATTAGCCTAGACTCAATGG 57.317 34.615 0.00 0.00 32.20 3.16
2849 6541 9.174166 GGAAAATAAACATTAGCCTAGACTCAA 57.826 33.333 0.00 0.00 0.00 3.02
2850 6542 8.548877 AGGAAAATAAACATTAGCCTAGACTCA 58.451 33.333 0.00 0.00 0.00 3.41
2851 6543 8.966069 AGGAAAATAAACATTAGCCTAGACTC 57.034 34.615 0.00 0.00 0.00 3.36
2864 6556 8.748412 CCTCCACATTTCATAGGAAAATAAACA 58.252 33.333 6.65 0.00 45.52 2.83
2865 6557 8.966868 TCCTCCACATTTCATAGGAAAATAAAC 58.033 33.333 6.65 0.00 45.52 2.01
2866 6558 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
2869 6561 7.946776 CCTATCCTCCACATTTCATAGGAAAAT 59.053 37.037 6.65 0.00 45.52 1.82
2870 6562 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
2871 6563 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
2872 6564 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
2873 6565 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
2874 6566 6.270927 TCTTCCTATCCTCCACATTTCATAGG 59.729 42.308 0.00 0.00 35.93 2.57
2875 6567 7.308450 TCTTCCTATCCTCCACATTTCATAG 57.692 40.000 0.00 0.00 0.00 2.23
2876 6568 7.690454 TTCTTCCTATCCTCCACATTTCATA 57.310 36.000 0.00 0.00 0.00 2.15
2877 6569 6.581388 TTCTTCCTATCCTCCACATTTCAT 57.419 37.500 0.00 0.00 0.00 2.57
2878 6570 6.581388 ATTCTTCCTATCCTCCACATTTCA 57.419 37.500 0.00 0.00 0.00 2.69
2879 6571 6.488344 GGAATTCTTCCTATCCTCCACATTTC 59.512 42.308 5.23 0.00 46.57 2.17
2880 6572 6.368805 GGAATTCTTCCTATCCTCCACATTT 58.631 40.000 5.23 0.00 46.57 2.32
2881 6573 5.946486 GGAATTCTTCCTATCCTCCACATT 58.054 41.667 5.23 0.00 46.57 2.71
2882 6574 5.574970 GGAATTCTTCCTATCCTCCACAT 57.425 43.478 5.23 0.00 46.57 3.21
2902 6594 8.471702 GGAATGGAATCCTATTCCTATGGAGGA 61.472 44.444 23.95 0.00 45.66 3.71
2903 6595 6.353429 GGAATGGAATCCTATTCCTATGGAGG 60.353 46.154 23.95 0.00 45.66 4.30
2904 6596 6.657875 GGAATGGAATCCTATTCCTATGGAG 58.342 44.000 23.95 0.00 45.66 3.86
2905 6597 6.642733 GGAATGGAATCCTATTCCTATGGA 57.357 41.667 23.95 0.29 45.66 3.41
2917 6609 5.105351 CCTTTGGTTTGTAGGAATGGAATCC 60.105 44.000 0.00 0.00 39.96 3.01
2918 6610 5.105351 CCCTTTGGTTTGTAGGAATGGAATC 60.105 44.000 0.00 0.00 0.00 2.52
2919 6611 4.777366 CCCTTTGGTTTGTAGGAATGGAAT 59.223 41.667 0.00 0.00 0.00 3.01
2920 6612 4.156477 CCCTTTGGTTTGTAGGAATGGAA 58.844 43.478 0.00 0.00 0.00 3.53
2921 6613 3.773560 CCCTTTGGTTTGTAGGAATGGA 58.226 45.455 0.00 0.00 0.00 3.41
2922 6614 2.233676 GCCCTTTGGTTTGTAGGAATGG 59.766 50.000 0.00 0.00 0.00 3.16
2923 6615 3.165071 AGCCCTTTGGTTTGTAGGAATG 58.835 45.455 0.00 0.00 0.00 2.67
2924 6616 3.076032 AGAGCCCTTTGGTTTGTAGGAAT 59.924 43.478 0.00 0.00 0.00 3.01
2925 6617 2.445525 AGAGCCCTTTGGTTTGTAGGAA 59.554 45.455 0.00 0.00 0.00 3.36
2926 6618 2.062636 AGAGCCCTTTGGTTTGTAGGA 58.937 47.619 0.00 0.00 0.00 2.94
2927 6619 2.586648 AGAGCCCTTTGGTTTGTAGG 57.413 50.000 0.00 0.00 0.00 3.18
2928 6620 4.399303 CCATTAGAGCCCTTTGGTTTGTAG 59.601 45.833 0.00 0.00 0.00 2.74
2929 6621 4.043561 TCCATTAGAGCCCTTTGGTTTGTA 59.956 41.667 0.00 0.00 0.00 2.41
2930 6622 3.165071 CCATTAGAGCCCTTTGGTTTGT 58.835 45.455 0.00 0.00 0.00 2.83
2931 6623 3.430453 TCCATTAGAGCCCTTTGGTTTG 58.570 45.455 0.00 0.00 0.00 2.93
2932 6624 3.825908 TCCATTAGAGCCCTTTGGTTT 57.174 42.857 0.00 0.00 0.00 3.27
2933 6625 4.337264 AATCCATTAGAGCCCTTTGGTT 57.663 40.909 0.00 0.00 0.00 3.67
2934 6626 4.337264 AAATCCATTAGAGCCCTTTGGT 57.663 40.909 0.00 0.00 0.00 3.67
2935 6627 5.682234 AAAAATCCATTAGAGCCCTTTGG 57.318 39.130 0.00 0.00 0.00 3.28
2968 6660 9.621239 TCTTGTAGGAATTTCATAGGATAGGAT 57.379 33.333 0.00 0.00 28.27 3.24
2969 6661 9.621239 ATCTTGTAGGAATTTCATAGGATAGGA 57.379 33.333 0.00 0.00 0.00 2.94
2973 6665 8.953665 AGGAATCTTGTAGGAATTTCATAGGAT 58.046 33.333 0.00 0.00 0.00 3.24
2974 6666 8.337118 AGGAATCTTGTAGGAATTTCATAGGA 57.663 34.615 0.00 0.00 0.00 2.94
2975 6667 8.435982 AGAGGAATCTTGTAGGAATTTCATAGG 58.564 37.037 0.00 0.00 0.00 2.57
2976 6668 9.844257 AAGAGGAATCTTGTAGGAATTTCATAG 57.156 33.333 0.00 0.00 0.00 2.23
2979 6671 9.449719 GTTAAGAGGAATCTTGTAGGAATTTCA 57.550 33.333 0.81 0.00 0.00 2.69
2980 6672 8.894731 GGTTAAGAGGAATCTTGTAGGAATTTC 58.105 37.037 0.81 0.00 0.00 2.17
2981 6673 8.390921 TGGTTAAGAGGAATCTTGTAGGAATTT 58.609 33.333 0.81 0.00 0.00 1.82
2982 6674 7.928873 TGGTTAAGAGGAATCTTGTAGGAATT 58.071 34.615 0.81 0.00 0.00 2.17
2983 6675 7.510675 TGGTTAAGAGGAATCTTGTAGGAAT 57.489 36.000 0.81 0.00 0.00 3.01
2984 6676 6.945636 TGGTTAAGAGGAATCTTGTAGGAA 57.054 37.500 0.81 0.00 0.00 3.36
2985 6677 6.945636 TTGGTTAAGAGGAATCTTGTAGGA 57.054 37.500 0.81 0.00 0.00 2.94
2986 6678 6.599638 CCTTTGGTTAAGAGGAATCTTGTAGG 59.400 42.308 0.81 0.00 35.80 3.18
2987 6679 7.394816 TCCTTTGGTTAAGAGGAATCTTGTAG 58.605 38.462 0.81 0.00 36.67 2.74
2988 6680 7.324388 TCCTTTGGTTAAGAGGAATCTTGTA 57.676 36.000 0.81 0.00 36.67 2.41
2989 6681 6.200878 TCCTTTGGTTAAGAGGAATCTTGT 57.799 37.500 0.81 0.00 36.67 3.16
2990 6682 5.649831 CCTCCTTTGGTTAAGAGGAATCTTG 59.350 44.000 0.00 0.00 39.00 3.02
2991 6683 5.808050 GCCTCCTTTGGTTAAGAGGAATCTT 60.808 44.000 9.06 0.00 39.00 2.40
2992 6684 4.324641 GCCTCCTTTGGTTAAGAGGAATCT 60.325 45.833 9.06 0.00 39.00 2.40
2993 6685 3.948473 GCCTCCTTTGGTTAAGAGGAATC 59.052 47.826 9.06 0.00 39.00 2.52
2994 6686 3.309193 GGCCTCCTTTGGTTAAGAGGAAT 60.309 47.826 9.06 0.00 39.00 3.01
2995 6687 2.041216 GGCCTCCTTTGGTTAAGAGGAA 59.959 50.000 9.06 0.00 39.00 3.36
2996 6688 1.633945 GGCCTCCTTTGGTTAAGAGGA 59.366 52.381 9.06 4.15 37.24 3.71
2997 6689 1.636003 AGGCCTCCTTTGGTTAAGAGG 59.364 52.381 0.00 0.43 35.80 3.69
2998 6690 4.569719 TTAGGCCTCCTTTGGTTAAGAG 57.430 45.455 9.68 0.00 35.80 2.85
2999 6691 5.253096 AGATTTAGGCCTCCTTTGGTTAAGA 59.747 40.000 9.68 0.00 35.80 2.10
3000 6692 5.510430 AGATTTAGGCCTCCTTTGGTTAAG 58.490 41.667 9.68 0.00 34.61 1.85
3001 6693 5.530176 AGATTTAGGCCTCCTTTGGTTAA 57.470 39.130 9.68 0.00 34.61 2.01
3002 6694 5.530176 AAGATTTAGGCCTCCTTTGGTTA 57.470 39.130 9.68 0.00 34.61 2.85
3003 6695 4.404185 AAGATTTAGGCCTCCTTTGGTT 57.596 40.909 9.68 0.00 34.61 3.67
3004 6696 4.404185 AAAGATTTAGGCCTCCTTTGGT 57.596 40.909 9.68 0.00 34.61 3.67
3005 6697 6.850752 TTTAAAGATTTAGGCCTCCTTTGG 57.149 37.500 9.68 0.00 34.61 3.28
3006 6698 9.725019 AAAATTTAAAGATTTAGGCCTCCTTTG 57.275 29.630 9.68 0.00 34.61 2.77
3539 7231 3.401182 TGCCATGCTTTGTTGGAAAATC 58.599 40.909 0.00 0.00 34.81 2.17
3580 7272 9.598517 TTTAAAATTATCAAATGACATGGCCTC 57.401 29.630 3.32 0.00 0.00 4.70
3613 7305 6.665695 AGAGGGTTAAACTTTTTGGAGTGTA 58.334 36.000 0.00 0.00 0.00 2.90
3659 7351 7.177392 AGCTTGCCAGTCTATATTTGTTTTCTT 59.823 33.333 0.00 0.00 0.00 2.52
3676 7368 2.695127 ATCTCTTCTGAGCTTGCCAG 57.305 50.000 0.00 0.00 40.03 4.85
3677 7369 4.767578 ATTATCTCTTCTGAGCTTGCCA 57.232 40.909 0.00 0.00 40.03 4.92
3912 7604 2.161808 CAGAGTCGAGTACACCGAATGT 59.838 50.000 13.70 8.27 46.06 2.71
4210 7906 8.261349 AGGCTCATCTTAGAATTCATTAGAGT 57.739 34.615 8.44 0.00 0.00 3.24
4449 8223 0.034186 TTTGAGCCATACCCAGCTGG 60.034 55.000 26.87 26.87 40.11 4.85
4650 8424 3.926616 AGGTGGTTTAGTGAATGACTCG 58.073 45.455 0.00 0.00 35.96 4.18
4664 8438 6.388619 AGAACTATTGGAATGTAGGTGGTT 57.611 37.500 0.00 0.00 0.00 3.67
4707 8488 5.239359 TGTAATGATTGCAGCAAGCTAAG 57.761 39.130 23.31 0.00 45.94 2.18
4793 8575 2.693074 GCCCACAAAGAAAGAAACAGGA 59.307 45.455 0.00 0.00 0.00 3.86
4970 8753 6.950860 TCCATGATACTGGGAATATGCTTA 57.049 37.500 0.00 0.00 36.89 3.09
5075 8858 3.877559 TGGACAACCATATTGCAGAGAG 58.122 45.455 0.00 0.00 41.77 3.20
5093 8928 1.739707 GCGGCAAATGCAATGATTGGA 60.740 47.619 7.35 4.30 44.36 3.53
5108 8943 2.094803 CCATTTACACAAATCAGCGGCA 60.095 45.455 1.45 0.00 31.82 5.69
5120 8955 2.058057 CGCAAAAGTGGCCATTTACAC 58.942 47.619 14.62 5.54 37.86 2.90
5121 8956 1.957177 TCGCAAAAGTGGCCATTTACA 59.043 42.857 14.62 0.00 0.00 2.41
5122 8957 2.715737 TCGCAAAAGTGGCCATTTAC 57.284 45.000 14.62 2.94 0.00 2.01
5123 8958 2.288518 GGTTCGCAAAAGTGGCCATTTA 60.289 45.455 14.62 0.00 0.00 1.40
5124 8959 1.540146 GGTTCGCAAAAGTGGCCATTT 60.540 47.619 9.72 8.67 0.00 2.32
5171 9008 9.155975 GTTTGAGCGATAACTAATATGGATCAT 57.844 33.333 0.00 0.00 42.30 2.45
5187 9028 3.735237 AGATACATCCGTTTGAGCGAT 57.265 42.857 0.00 0.00 0.00 4.58
5243 9084 7.880195 ACTCCCTCCGATTCATATTAATTCTTG 59.120 37.037 0.00 0.00 0.00 3.02
5245 9086 7.560796 ACTCCCTCCGATTCATATTAATTCT 57.439 36.000 0.00 0.00 0.00 2.40
5262 9103 8.808092 ACTGACTAGCAAATTATATACTCCCTC 58.192 37.037 0.00 0.00 0.00 4.30
5292 9135 5.844004 ACTTCTTTACACTCGTCAGTCAAT 58.156 37.500 0.00 0.00 0.00 2.57
5293 9136 5.258456 ACTTCTTTACACTCGTCAGTCAA 57.742 39.130 0.00 0.00 0.00 3.18
5351 9194 9.672086 TGTAATTTGCATAAGTACAAAAGTGTC 57.328 29.630 14.88 0.00 39.09 3.67
5540 9385 6.097915 TCAACAAGGTCTTCGAACTTATCT 57.902 37.500 0.00 0.00 37.51 1.98
5543 9388 4.451096 GCATCAACAAGGTCTTCGAACTTA 59.549 41.667 0.00 0.00 37.51 2.24
5733 9578 6.613271 AGGATAAGAATTGCTCAGACCTAAGA 59.387 38.462 0.00 0.00 0.00 2.10
5760 9605 7.827236 TCACGTTTATGGAACCTTCTTTGATAT 59.173 33.333 0.00 0.00 34.67 1.63
5845 9703 3.069586 CCCATTCACCGCTCTAGACAATA 59.930 47.826 0.00 0.00 0.00 1.90
5854 9712 1.026718 CCTGAACCCATTCACCGCTC 61.027 60.000 0.00 0.00 40.01 5.03
5892 9757 1.222661 GGTACCAACCGATCCCCAC 59.777 63.158 7.15 0.00 35.62 4.61
5893 9758 3.730158 GGTACCAACCGATCCCCA 58.270 61.111 7.15 0.00 35.62 4.96
5996 10204 6.233434 AGAATCTGCACTTGACATCTAACAA 58.767 36.000 0.00 0.00 0.00 2.83
5998 10206 5.293079 GGAGAATCTGCACTTGACATCTAAC 59.707 44.000 0.00 0.00 33.73 2.34
6007 10382 2.205022 TTGGGGAGAATCTGCACTTG 57.795 50.000 5.45 0.00 33.73 3.16
6009 10384 2.978156 TTTTGGGGAGAATCTGCACT 57.022 45.000 5.45 0.00 33.73 4.40
6039 10414 7.224167 GTGCAGGTATGAAAATACTACACCTAC 59.776 40.741 0.00 0.00 33.23 3.18
6093 10633 2.027192 ACAGTTCCGCCAGTGTAATCAT 60.027 45.455 0.00 0.00 0.00 2.45
6107 10647 2.678336 GGGAAATCGACATGACAGTTCC 59.322 50.000 0.00 8.70 35.82 3.62
6135 10675 1.190643 AGGGACAAGAGCTAGCTCAC 58.809 55.000 38.86 26.78 44.99 3.51
6137 10677 3.006247 CAAAAGGGACAAGAGCTAGCTC 58.994 50.000 33.21 33.21 43.03 4.09
6143 10686 3.507622 AGCATAACAAAAGGGACAAGAGC 59.492 43.478 0.00 0.00 0.00 4.09
6156 10699 4.097741 GGCCACACATGATTAGCATAACAA 59.902 41.667 0.00 0.00 34.82 2.83
6157 10700 3.631686 GGCCACACATGATTAGCATAACA 59.368 43.478 0.00 0.00 34.82 2.41
6158 10701 3.004734 GGGCCACACATGATTAGCATAAC 59.995 47.826 4.39 0.00 34.82 1.89
6166 10714 0.409092 TCAAGGGGCCACACATGATT 59.591 50.000 8.31 0.00 0.00 2.57
6241 10792 6.972328 TGAACATTTTACTTGACTTCAGCAAC 59.028 34.615 0.00 0.00 0.00 4.17
6266 10817 1.072505 CCAACTGCCCGTACCAACT 59.927 57.895 0.00 0.00 0.00 3.16
6274 10825 1.603455 AATGTGTCCCAACTGCCCG 60.603 57.895 0.00 0.00 0.00 6.13
6288 10864 7.177216 ACAACATGATACAGGTGAAATCAATGT 59.823 33.333 0.00 7.44 33.60 2.71
6300 10876 4.870426 GTGGTACAGACAACATGATACAGG 59.130 45.833 0.00 0.00 41.80 4.00
6325 10902 1.156736 GGCACATGACACCACTACAC 58.843 55.000 0.00 0.00 0.00 2.90
6359 10945 4.041049 TGTGCTTGTTACAAAATTCTGCG 58.959 39.130 0.00 0.00 0.00 5.18
6396 10982 9.086336 ACAAAATTCTGCGTATATGAAAAATGG 57.914 29.630 0.00 0.00 0.00 3.16
6403 10989 5.007626 GCCAGACAAAATTCTGCGTATATGA 59.992 40.000 0.00 0.00 41.61 2.15
6404 10990 5.008019 AGCCAGACAAAATTCTGCGTATATG 59.992 40.000 0.00 0.00 41.61 1.78
6405 10991 5.126067 AGCCAGACAAAATTCTGCGTATAT 58.874 37.500 0.00 0.00 41.61 0.86
6407 10993 3.347216 AGCCAGACAAAATTCTGCGTAT 58.653 40.909 0.00 0.00 41.61 3.06
6408 10994 2.778299 AGCCAGACAAAATTCTGCGTA 58.222 42.857 0.00 0.00 41.61 4.42
6409 10995 1.609208 AGCCAGACAAAATTCTGCGT 58.391 45.000 0.00 0.00 41.61 5.24
6410 10996 2.030893 TGAAGCCAGACAAAATTCTGCG 60.031 45.455 0.00 0.00 41.61 5.18
6411 10997 3.005155 AGTGAAGCCAGACAAAATTCTGC 59.995 43.478 0.00 0.00 41.61 4.26
6412 10998 4.843220 AGTGAAGCCAGACAAAATTCTG 57.157 40.909 0.00 0.00 42.46 3.02
6413 10999 7.119846 GTGTATAGTGAAGCCAGACAAAATTCT 59.880 37.037 0.00 0.00 0.00 2.40
6414 11000 7.119846 AGTGTATAGTGAAGCCAGACAAAATTC 59.880 37.037 0.00 0.00 0.00 2.17
6415 11001 6.942576 AGTGTATAGTGAAGCCAGACAAAATT 59.057 34.615 0.00 0.00 0.00 1.82
6416 11002 6.476378 AGTGTATAGTGAAGCCAGACAAAAT 58.524 36.000 0.00 0.00 0.00 1.82
6417 11003 5.865085 AGTGTATAGTGAAGCCAGACAAAA 58.135 37.500 0.00 0.00 0.00 2.44
6418 11004 5.483685 AGTGTATAGTGAAGCCAGACAAA 57.516 39.130 0.00 0.00 0.00 2.83
6419 11005 5.479027 TGTAGTGTATAGTGAAGCCAGACAA 59.521 40.000 0.00 0.00 0.00 3.18
6420 11006 5.014202 TGTAGTGTATAGTGAAGCCAGACA 58.986 41.667 0.00 0.00 0.00 3.41
6421 11007 5.578005 TGTAGTGTATAGTGAAGCCAGAC 57.422 43.478 0.00 0.00 0.00 3.51
6422 11008 5.891551 TCATGTAGTGTATAGTGAAGCCAGA 59.108 40.000 0.00 0.00 0.00 3.86
6423 11009 6.149129 TCATGTAGTGTATAGTGAAGCCAG 57.851 41.667 0.00 0.00 0.00 4.85
6424 11010 6.731292 ATCATGTAGTGTATAGTGAAGCCA 57.269 37.500 0.00 0.00 0.00 4.75
6425 11011 7.815068 CCTAATCATGTAGTGTATAGTGAAGCC 59.185 40.741 0.00 0.00 0.00 4.35
6426 11012 8.577296 TCCTAATCATGTAGTGTATAGTGAAGC 58.423 37.037 0.00 0.00 0.00 3.86
6429 11015 8.577296 GCTTCCTAATCATGTAGTGTATAGTGA 58.423 37.037 0.00 0.00 0.00 3.41
6430 11016 8.580720 AGCTTCCTAATCATGTAGTGTATAGTG 58.419 37.037 0.00 0.00 0.00 2.74
6431 11017 8.713708 AGCTTCCTAATCATGTAGTGTATAGT 57.286 34.615 0.00 0.00 0.00 2.12
6436 11022 9.686683 AAAAATAGCTTCCTAATCATGTAGTGT 57.313 29.630 0.00 0.00 0.00 3.55
6476 11062 3.132646 ACACACTGCCATGAAACATGTTT 59.867 39.130 23.49 23.49 35.14 2.83
6479 11065 3.054166 CAACACACTGCCATGAAACATG 58.946 45.455 0.00 4.94 0.00 3.21
6508 11094 8.697846 TTACTTCACATTCGTTAGGTATCAAG 57.302 34.615 0.00 0.00 0.00 3.02
6521 11140 9.659830 AAAATAGTGTTCGTTTACTTCACATTC 57.340 29.630 0.00 0.00 0.00 2.67
6530 11149 7.319615 CCGAAACAGAAAATAGTGTTCGTTTAC 59.680 37.037 0.00 0.00 35.83 2.01
6533 11152 5.744490 CCGAAACAGAAAATAGTGTTCGTT 58.256 37.500 0.00 0.00 35.83 3.85
6557 11187 8.948853 AAATTACACTACATTTGACATCAACG 57.051 30.769 0.00 0.00 35.28 4.10
6596 11227 3.447586 AGCTTACGCTACCATTTGAGAGA 59.552 43.478 0.00 0.00 46.79 3.10
6597 11228 3.553511 CAGCTTACGCTACCATTTGAGAG 59.446 47.826 0.00 0.00 46.99 3.20
6603 11234 5.277857 AGTAATCAGCTTACGCTACCATT 57.722 39.130 0.00 0.00 46.99 3.16
6605 11236 3.067742 GGAGTAATCAGCTTACGCTACCA 59.932 47.826 0.00 0.00 46.99 3.25
6656 11288 2.674357 GCTTGCGCCATTGATTGAATTT 59.326 40.909 4.18 0.00 0.00 1.82
6661 11293 1.402968 AGTAGCTTGCGCCATTGATTG 59.597 47.619 4.18 0.00 36.60 2.67
6664 11296 2.394930 TTAGTAGCTTGCGCCATTGA 57.605 45.000 4.18 0.00 36.60 2.57
6665 11297 2.855953 GCATTAGTAGCTTGCGCCATTG 60.856 50.000 4.18 0.00 36.60 2.82
6667 11299 0.947244 GCATTAGTAGCTTGCGCCAT 59.053 50.000 4.18 0.00 36.60 4.40
6668 11300 2.393557 GCATTAGTAGCTTGCGCCA 58.606 52.632 4.18 0.00 36.60 5.69
6684 11316 2.697819 CATCAGATGATGTGCCGCA 58.302 52.632 13.55 0.00 45.10 5.69
6705 11337 6.603201 TCTTCTGTCCTTTGTGTTCTTCAATT 59.397 34.615 0.00 0.00 0.00 2.32
6706 11338 6.122277 TCTTCTGTCCTTTGTGTTCTTCAAT 58.878 36.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.