Multiple sequence alignment - TraesCS5D01G374300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G374300 chr5D 100.000 4043 0 0 1 4043 447306991 447302949 0.000000e+00 7467.0
1 TraesCS5D01G374300 chr5D 88.387 465 41 4 3591 4043 9230351 9229888 7.640000e-152 547.0
2 TraesCS5D01G374300 chr5D 78.923 427 67 10 1000 1419 447389829 447389419 6.660000e-68 268.0
3 TraesCS5D01G374300 chr5D 85.185 135 15 5 164 297 511937107 511936977 2.540000e-27 134.0
4 TraesCS5D01G374300 chr5B 90.252 3211 221 47 300 3449 545277685 545280864 0.000000e+00 4111.0
5 TraesCS5D01G374300 chr5B 81.696 1191 199 14 2239 3416 545818782 545819966 0.000000e+00 974.0
6 TraesCS5D01G374300 chr5B 87.446 462 45 4 3591 4040 19112150 19112610 1.670000e-143 520.0
7 TraesCS5D01G374300 chr5B 89.328 253 15 5 24 268 545277166 545277414 1.410000e-79 307.0
8 TraesCS5D01G374300 chr5B 84.672 137 15 6 164 297 642884025 642883892 9.120000e-27 132.0
9 TraesCS5D01G374300 chr5B 82.353 85 12 3 178 261 696384860 696384942 2.020000e-08 71.3
10 TraesCS5D01G374300 chr5A 90.969 1218 102 5 2239 3449 565249447 565250663 0.000000e+00 1633.0
11 TraesCS5D01G374300 chr5A 94.366 142 8 0 3447 3588 565250708 565250849 6.800000e-53 219.0
12 TraesCS5D01G374300 chr5A 74.914 582 83 34 1002 1544 565248048 565248605 1.470000e-49 207.0
13 TraesCS5D01G374300 chr5A 85.333 150 13 7 655 796 565247010 565247158 3.260000e-31 147.0
14 TraesCS5D01G374300 chr5A 86.765 136 13 5 164 297 640268012 640267880 3.260000e-31 147.0
15 TraesCS5D01G374300 chr5A 84.821 112 11 4 876 987 565247371 565247476 1.540000e-19 108.0
16 TraesCS5D01G374300 chr6D 84.392 1275 184 10 2186 3449 21078512 21079782 0.000000e+00 1238.0
17 TraesCS5D01G374300 chr6D 89.247 465 36 8 3591 4043 391685387 391684925 1.630000e-158 569.0
18 TraesCS5D01G374300 chr4D 84.596 1214 182 5 2239 3449 2999503 3000714 0.000000e+00 1201.0
19 TraesCS5D01G374300 chr4D 88.326 454 37 5 3602 4043 3499751 3499302 7.690000e-147 531.0
20 TraesCS5D01G374300 chr4D 73.069 1010 172 53 1000 1948 1665732 1666702 2.400000e-67 267.0
21 TraesCS5D01G374300 chr4A 84.171 1213 180 9 2244 3448 603036967 603038175 0.000000e+00 1166.0
22 TraesCS5D01G374300 chr3D 83.690 1214 184 10 2244 3449 567742539 567741332 0.000000e+00 1133.0
23 TraesCS5D01G374300 chr3D 89.912 456 33 2 3601 4043 200432651 200432196 3.500000e-160 575.0
24 TraesCS5D01G374300 chr3D 76.978 278 43 12 1636 1910 567745649 567745390 5.450000e-29 139.0
25 TraesCS5D01G374300 chr6B 81.699 1224 202 16 2239 3449 5838150 5839364 0.000000e+00 1000.0
26 TraesCS5D01G374300 chrUn 83.303 1090 171 9 2239 3320 47921732 47920646 0.000000e+00 994.0
27 TraesCS5D01G374300 chrUn 86.582 395 41 4 3661 4043 71283206 71282812 3.730000e-115 425.0
28 TraesCS5D01G374300 chrUn 95.238 42 1 1 1484 1525 47922566 47922526 9.380000e-07 65.8
29 TraesCS5D01G374300 chr7D 88.817 465 38 5 3591 4043 604993509 604993047 3.530000e-155 558.0
30 TraesCS5D01G374300 chr2D 88.387 465 41 5 3591 4043 630617939 630617476 7.640000e-152 547.0
31 TraesCS5D01G374300 chr2D 84.835 455 58 5 3589 4043 528327736 528327293 7.970000e-122 448.0
32 TraesCS5D01G374300 chr1B 88.172 465 42 4 3591 4043 543087369 543087832 3.550000e-150 542.0
33 TraesCS5D01G374300 chr1B 82.886 298 36 8 300 585 100420097 100420391 1.870000e-63 254.0
34 TraesCS5D01G374300 chr1B 89.147 129 12 2 381 508 676179672 676179799 4.180000e-35 159.0
35 TraesCS5D01G374300 chr4B 87.420 469 47 1 3587 4043 66606374 66605906 2.770000e-146 529.0
36 TraesCS5D01G374300 chr1D 86.882 465 48 5 3591 4043 75907640 75907177 3.610000e-140 508.0
37 TraesCS5D01G374300 chr1D 79.276 304 39 10 300 585 62872881 62873178 1.480000e-44 191.0
38 TraesCS5D01G374300 chr2B 87.464 351 36 2 3693 4043 419505226 419505568 8.140000e-107 398.0
39 TraesCS5D01G374300 chr2B 78.571 140 19 11 162 297 150347148 150347280 9.310000e-12 82.4
40 TraesCS5D01G374300 chr2B 77.698 139 20 10 163 297 150400641 150400772 1.560000e-09 75.0
41 TraesCS5D01G374300 chr3A 84.390 205 31 1 325 529 21074353 21074150 2.460000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G374300 chr5D 447302949 447306991 4042 True 7467.0 7467 100.0000 1 4043 1 chr5D.!!$R2 4042
1 TraesCS5D01G374300 chr5B 545277166 545280864 3698 False 2209.0 4111 89.7900 24 3449 2 chr5B.!!$F4 3425
2 TraesCS5D01G374300 chr5B 545818782 545819966 1184 False 974.0 974 81.6960 2239 3416 1 chr5B.!!$F2 1177
3 TraesCS5D01G374300 chr5A 565247010 565250849 3839 False 462.8 1633 86.0806 655 3588 5 chr5A.!!$F1 2933
4 TraesCS5D01G374300 chr6D 21078512 21079782 1270 False 1238.0 1238 84.3920 2186 3449 1 chr6D.!!$F1 1263
5 TraesCS5D01G374300 chr4D 2999503 3000714 1211 False 1201.0 1201 84.5960 2239 3449 1 chr4D.!!$F2 1210
6 TraesCS5D01G374300 chr4D 1665732 1666702 970 False 267.0 267 73.0690 1000 1948 1 chr4D.!!$F1 948
7 TraesCS5D01G374300 chr4A 603036967 603038175 1208 False 1166.0 1166 84.1710 2244 3448 1 chr4A.!!$F1 1204
8 TraesCS5D01G374300 chr3D 567741332 567745649 4317 True 636.0 1133 80.3340 1636 3449 2 chr3D.!!$R2 1813
9 TraesCS5D01G374300 chr6B 5838150 5839364 1214 False 1000.0 1000 81.6990 2239 3449 1 chr6B.!!$F1 1210
10 TraesCS5D01G374300 chrUn 47920646 47922566 1920 True 529.9 994 89.2705 1484 3320 2 chrUn.!!$R2 1836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 309 0.037232 GGTGCGGGGTATCATCTAGC 60.037 60.0 0.00 0.0 0.00 3.42 F
834 1274 0.661552 CCCATCTCATGCTTGAAGCG 59.338 55.0 13.05 0.0 46.26 4.68 F
1556 2616 0.321564 CCCAAGGTCAGCGATGTTGA 60.322 55.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1294 2332 0.106918 TTCAACCACGGGTTCAGCTT 60.107 50.0 5.45 0.0 43.05 3.74 R
2059 3358 0.170561 ATCGTACCTGTGTCGTCTGC 59.829 55.0 0.00 0.0 0.00 4.26 R
3239 7054 0.325933 TCTCCACTTGCCTCATGGTG 59.674 55.0 0.00 0.0 34.89 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.434185 TCGTCCATGCACCGAAGC 60.434 61.111 0.00 0.00 0.00 3.86
28 29 3.439008 CCGAAGCACCGGGTTTTT 58.561 55.556 6.32 0.00 45.43 1.94
51 52 5.607119 TCTTCTAATTTTCTGTTCACCGC 57.393 39.130 0.00 0.00 0.00 5.68
54 55 1.314730 AATTTTCTGTTCACCGCGGT 58.685 45.000 28.70 28.70 0.00 5.68
65 66 2.659897 CCGCGGTAGCAGATGAGC 60.660 66.667 19.50 0.00 45.49 4.26
67 68 1.659954 CGCGGTAGCAGATGAGCTC 60.660 63.158 6.82 6.82 45.26 4.09
141 142 8.988060 TCACTACCCTGAATATTCATACTTCAA 58.012 33.333 18.26 0.00 36.46 2.69
142 143 9.265901 CACTACCCTGAATATTCATACTTCAAG 57.734 37.037 18.26 11.52 36.46 3.02
183 192 9.820725 ATTGCAAACACAATAAAGCATATGTAT 57.179 25.926 1.71 0.00 38.48 2.29
277 289 4.963318 TGCAAAATATTCCCCACAACAA 57.037 36.364 0.00 0.00 0.00 2.83
279 291 4.252878 GCAAAATATTCCCCACAACAAGG 58.747 43.478 0.00 0.00 0.00 3.61
280 292 4.262851 GCAAAATATTCCCCACAACAAGGT 60.263 41.667 0.00 0.00 0.00 3.50
282 294 1.917872 TATTCCCCACAACAAGGTGC 58.082 50.000 0.00 0.00 37.46 5.01
283 295 1.178534 ATTCCCCACAACAAGGTGCG 61.179 55.000 0.00 0.00 37.46 5.34
284 296 3.294493 CCCCACAACAAGGTGCGG 61.294 66.667 0.00 0.00 37.46 5.69
296 308 1.633774 AGGTGCGGGGTATCATCTAG 58.366 55.000 0.00 0.00 0.00 2.43
297 309 0.037232 GGTGCGGGGTATCATCTAGC 60.037 60.000 0.00 0.00 0.00 3.42
298 310 0.679505 GTGCGGGGTATCATCTAGCA 59.320 55.000 0.00 0.00 0.00 3.49
299 311 1.276421 GTGCGGGGTATCATCTAGCAT 59.724 52.381 0.00 0.00 35.54 3.79
326 574 9.890629 ATCTTAACATGCAACGTATATATCCAT 57.109 29.630 0.00 0.00 0.00 3.41
327 575 9.366216 TCTTAACATGCAACGTATATATCCATC 57.634 33.333 0.00 0.00 0.00 3.51
334 582 9.702494 ATGCAACGTATATATCCATCTCATATG 57.298 33.333 0.00 0.00 0.00 1.78
346 594 4.451435 CCATCTCATATGTCTCACACATGC 59.549 45.833 1.90 0.00 45.98 4.06
354 602 1.059098 TCTCACACATGCCACCTCTT 58.941 50.000 0.00 0.00 0.00 2.85
365 613 5.421693 ACATGCCACCTCTTATTTAAATGCA 59.578 36.000 11.05 9.13 0.00 3.96
390 638 8.121086 CACAAGCAAGACATCTACATTATCAAG 58.879 37.037 0.00 0.00 0.00 3.02
399 647 1.391577 ACATTATCAAGGCGCATGCA 58.608 45.000 19.57 0.00 45.35 3.96
402 650 3.181473 ACATTATCAAGGCGCATGCAATT 60.181 39.130 19.57 5.83 45.35 2.32
409 657 2.813061 AGGCGCATGCAATTAATCAAC 58.187 42.857 19.57 0.00 45.35 3.18
413 661 4.093261 GGCGCATGCAATTAATCAACTTTT 59.907 37.500 19.57 0.00 45.35 2.27
417 665 6.128876 CGCATGCAATTAATCAACTTTTCACA 60.129 34.615 19.57 0.00 0.00 3.58
422 670 9.755804 TGCAATTAATCAACTTTTCACATTACA 57.244 25.926 0.00 0.00 0.00 2.41
451 699 2.408271 TGTCCTCCACATCATCAAGC 57.592 50.000 0.00 0.00 0.00 4.01
481 729 4.566759 GCAACCTTTCAACTTTCCACTTTC 59.433 41.667 0.00 0.00 0.00 2.62
482 730 5.624509 GCAACCTTTCAACTTTCCACTTTCT 60.625 40.000 0.00 0.00 0.00 2.52
483 731 6.405397 GCAACCTTTCAACTTTCCACTTTCTA 60.405 38.462 0.00 0.00 0.00 2.10
520 768 6.071784 CCTCCACATCATCAAAGAACATGAAA 60.072 38.462 0.00 0.00 32.76 2.69
521 769 7.363530 CCTCCACATCATCAAAGAACATGAAAT 60.364 37.037 0.00 0.00 32.76 2.17
522 770 7.541162 TCCACATCATCAAAGAACATGAAATC 58.459 34.615 0.00 0.00 32.76 2.17
530 778 5.243730 TCAAAGAACATGAAATCCCTTCACC 59.756 40.000 0.00 0.00 46.80 4.02
531 779 3.701664 AGAACATGAAATCCCTTCACCC 58.298 45.455 0.00 0.00 46.80 4.61
544 792 8.456221 AATCCCTTCACCCCATTAATTTTTAA 57.544 30.769 0.00 0.00 0.00 1.52
620 869 6.509418 TTATCTTTAGGTTGAATGTGGTGC 57.491 37.500 0.00 0.00 0.00 5.01
632 881 8.945057 GGTTGAATGTGGTGCAATAATATTTTT 58.055 29.630 0.00 0.00 0.00 1.94
814 1091 4.180946 CGAGAGTGGAGACCGGCG 62.181 72.222 0.00 0.00 0.00 6.46
834 1274 0.661552 CCCATCTCATGCTTGAAGCG 59.338 55.000 13.05 0.00 46.26 4.68
839 1279 1.202405 TCTCATGCTTGAAGCGCGATA 60.202 47.619 12.10 1.43 46.26 2.92
858 1298 4.035324 CGATAGGTAGGTACGCTCCATATG 59.965 50.000 0.00 0.00 0.00 1.78
859 1299 3.240310 AGGTAGGTACGCTCCATATGT 57.760 47.619 1.24 0.00 0.00 2.29
860 1300 4.377762 AGGTAGGTACGCTCCATATGTA 57.622 45.455 1.24 0.00 0.00 2.29
861 1301 4.931914 AGGTAGGTACGCTCCATATGTAT 58.068 43.478 1.24 0.00 0.00 2.29
862 1302 4.948621 AGGTAGGTACGCTCCATATGTATC 59.051 45.833 1.24 0.00 0.00 2.24
863 1303 4.097589 GGTAGGTACGCTCCATATGTATCC 59.902 50.000 1.24 0.00 0.00 2.59
864 1304 3.774734 AGGTACGCTCCATATGTATCCA 58.225 45.455 1.24 0.00 0.00 3.41
908 1348 6.863126 CCAATGGAGAAAACAACTGATTACAC 59.137 38.462 0.00 0.00 0.00 2.90
993 1433 4.704833 GCCGCTGCTCCAAGTCCA 62.705 66.667 0.00 0.00 33.53 4.02
994 1434 2.743928 CCGCTGCTCCAAGTCCAC 60.744 66.667 0.00 0.00 0.00 4.02
1083 2080 4.778143 CCGCCCAGGTGCTACCAC 62.778 72.222 7.86 0.00 41.95 4.16
1149 2146 1.227497 GATCCCGAGGCTTCTGCTG 60.227 63.158 0.00 0.00 39.59 4.41
1153 2150 4.399395 CGAGGCTTCTGCTGGGCA 62.399 66.667 10.33 0.00 39.59 5.36
1285 2294 3.774702 GCCTCGGCGACAACGAAC 61.775 66.667 4.99 0.00 40.16 3.95
1290 2328 4.072088 GGCGACAACGAACTGCCG 62.072 66.667 0.00 0.00 42.66 5.69
1294 2332 0.935831 CGACAACGAACTGCCGTACA 60.936 55.000 0.00 0.00 42.54 2.90
1295 2333 1.210870 GACAACGAACTGCCGTACAA 58.789 50.000 0.00 0.00 42.54 2.41
1433 2487 1.447643 GTGGCGCCATCTATGACCT 59.552 57.895 35.23 0.00 0.00 3.85
1551 2611 2.270205 CTGCCCAAGGTCAGCGAT 59.730 61.111 0.00 0.00 0.00 4.58
1552 2612 2.046023 TGCCCAAGGTCAGCGATG 60.046 61.111 0.00 0.00 0.00 3.84
1553 2613 2.045926 GCCCAAGGTCAGCGATGT 60.046 61.111 0.00 0.00 0.00 3.06
1554 2614 1.675641 GCCCAAGGTCAGCGATGTT 60.676 57.895 0.00 0.00 0.00 2.71
1555 2615 1.926511 GCCCAAGGTCAGCGATGTTG 61.927 60.000 0.00 0.00 0.00 3.33
1556 2616 0.321564 CCCAAGGTCAGCGATGTTGA 60.322 55.000 0.00 0.00 0.00 3.18
1557 2617 1.522668 CCAAGGTCAGCGATGTTGAA 58.477 50.000 0.00 0.00 0.00 2.69
1558 2618 1.879380 CCAAGGTCAGCGATGTTGAAA 59.121 47.619 0.00 0.00 0.00 2.69
1559 2619 2.489329 CCAAGGTCAGCGATGTTGAAAT 59.511 45.455 0.00 0.00 0.00 2.17
1810 2920 0.557729 AATGGGCATCCCTAACCCTG 59.442 55.000 3.27 0.00 45.70 4.45
1811 2921 0.627469 ATGGGCATCCCTAACCCTGT 60.627 55.000 3.27 0.00 45.70 4.00
1812 2922 0.849094 TGGGCATCCCTAACCCTGTT 60.849 55.000 3.27 0.00 45.70 3.16
1911 3021 4.090642 CGTGAGTCTAAAGCTTGACATGTC 59.909 45.833 19.27 19.27 35.81 3.06
1917 3027 4.937620 TCTAAAGCTTGACATGTCCACATC 59.062 41.667 22.85 7.80 33.61 3.06
1920 3030 2.303890 AGCTTGACATGTCCACATCTCA 59.696 45.455 22.85 0.00 33.61 3.27
1926 3036 2.695147 ACATGTCCACATCTCATCGCTA 59.305 45.455 0.00 0.00 33.61 4.26
1948 3066 9.478019 CGCTACTTTGTAAACTTGATTCTATTG 57.522 33.333 0.00 0.00 0.00 1.90
1991 3290 2.842457 TGCAGATATCAAAGAGCGCAT 58.158 42.857 11.47 0.00 0.00 4.73
2094 3405 2.009774 ACGATTATCACCAGCTTGTGC 58.990 47.619 12.98 0.00 36.17 4.57
2108 3419 4.800993 CAGCTTGTGCATGACTACTACTAC 59.199 45.833 0.00 0.00 42.74 2.73
2288 6089 5.510671 CGGACCATGCATTATACTTTTGAC 58.489 41.667 0.00 0.00 0.00 3.18
2323 6124 4.793201 TCTAATCACCCGAGATCTTGAGA 58.207 43.478 11.89 6.83 0.00 3.27
2532 6334 3.581332 ACAAAGGGATCTTGTCGGACTTA 59.419 43.478 9.88 0.00 32.75 2.24
2595 6398 6.748198 AGAGAGAAATCGACGAGTTCATAAAC 59.252 38.462 31.95 20.04 38.82 2.01
2613 6416 3.258225 CGAGGTTGCCATACTCTCG 57.742 57.895 0.00 0.00 40.68 4.04
2727 6530 4.516698 ACACTCAATGACCATCTTCACAAC 59.483 41.667 0.00 0.00 0.00 3.32
2791 6594 6.121776 TCACAGGTGAAATAGGAAAAGCTA 57.878 37.500 0.00 0.00 36.53 3.32
2866 6669 4.072131 GCCTTCCAACATACTTCTTGACA 58.928 43.478 0.00 0.00 0.00 3.58
3027 6839 8.608844 AAAGTAGTGATGTATATAGCTTTGGC 57.391 34.615 0.00 0.00 39.06 4.52
3040 6852 1.884235 CTTTGGCGTCCTTCTTGTCT 58.116 50.000 0.00 0.00 0.00 3.41
3197 7010 4.739195 AGCGAAGTGAAAGAAGTAGCTAG 58.261 43.478 0.00 0.00 0.00 3.42
3239 7054 1.079057 GAAAGCAGAGGACCGACCC 60.079 63.158 0.00 0.00 40.05 4.46
3453 7326 7.040473 AGACACCCTCGATAGTTTTGTATAG 57.960 40.000 0.00 0.00 37.40 1.31
3487 7360 8.755696 TCGATGGGTTCTTTTTATCAAAAATG 57.244 30.769 0.00 0.00 39.43 2.32
3488 7361 7.330700 TCGATGGGTTCTTTTTATCAAAAATGC 59.669 33.333 0.00 0.00 39.43 3.56
3518 7391 9.938280 TGAAGCTGTAGTGTGTTATTAGTTATT 57.062 29.630 0.00 0.00 0.00 1.40
3562 7435 7.846644 ATTTCAAAGCAAACAATTGAACTCA 57.153 28.000 13.59 0.00 41.35 3.41
3563 7436 6.890663 TTCAAAGCAAACAATTGAACTCAG 57.109 33.333 13.59 0.00 37.95 3.35
3588 7461 6.184580 TGTATTAATTTTTGCCGTCGTCAT 57.815 33.333 0.00 0.00 0.00 3.06
3589 7462 6.024664 TGTATTAATTTTTGCCGTCGTCATG 58.975 36.000 0.00 0.00 0.00 3.07
3590 7463 2.346099 AATTTTTGCCGTCGTCATGG 57.654 45.000 0.00 0.00 0.00 3.66
3591 7464 0.525761 ATTTTTGCCGTCGTCATGGG 59.474 50.000 0.00 0.00 0.00 4.00
3610 7483 4.508128 GACGCGAGGGCAATCCGA 62.508 66.667 15.93 0.00 41.52 4.55
3611 7484 3.792053 GACGCGAGGGCAATCCGAT 62.792 63.158 15.93 0.00 41.52 4.18
3612 7485 3.038417 CGCGAGGGCAATCCGATC 61.038 66.667 0.00 0.00 41.52 3.69
3613 7486 2.423446 GCGAGGGCAATCCGATCT 59.577 61.111 0.00 0.00 41.52 2.75
3614 7487 1.666234 GCGAGGGCAATCCGATCTC 60.666 63.158 0.00 0.00 41.52 2.75
3615 7488 2.045280 CGAGGGCAATCCGATCTCT 58.955 57.895 0.00 0.00 41.52 3.10
3616 7489 0.038709 CGAGGGCAATCCGATCTCTC 60.039 60.000 0.00 0.00 41.52 3.20
3617 7490 0.038709 GAGGGCAATCCGATCTCTCG 60.039 60.000 0.00 0.00 44.62 4.04
3618 7491 1.666234 GGGCAATCCGATCTCTCGC 60.666 63.158 0.00 0.00 43.66 5.03
3619 7492 1.666234 GGCAATCCGATCTCTCGCC 60.666 63.158 0.00 0.00 43.66 5.54
3620 7493 2.018866 GCAATCCGATCTCTCGCCG 61.019 63.158 0.00 0.00 43.66 6.46
3621 7494 2.018866 CAATCCGATCTCTCGCCGC 61.019 63.158 0.00 0.00 43.66 6.53
3622 7495 3.544167 AATCCGATCTCTCGCCGCG 62.544 63.158 6.39 6.39 43.66 6.46
3638 7511 4.301027 CGCCGCCTCCCCTCATAC 62.301 72.222 0.00 0.00 0.00 2.39
3639 7512 3.942439 GCCGCCTCCCCTCATACC 61.942 72.222 0.00 0.00 0.00 2.73
3640 7513 3.242291 CCGCCTCCCCTCATACCC 61.242 72.222 0.00 0.00 0.00 3.69
3641 7514 3.242291 CGCCTCCCCTCATACCCC 61.242 72.222 0.00 0.00 0.00 4.95
3642 7515 2.290745 GCCTCCCCTCATACCCCT 59.709 66.667 0.00 0.00 0.00 4.79
3643 7516 1.386057 GCCTCCCCTCATACCCCTT 60.386 63.158 0.00 0.00 0.00 3.95
3644 7517 1.419720 GCCTCCCCTCATACCCCTTC 61.420 65.000 0.00 0.00 0.00 3.46
3645 7518 0.030092 CCTCCCCTCATACCCCTTCA 60.030 60.000 0.00 0.00 0.00 3.02
3646 7519 1.132500 CTCCCCTCATACCCCTTCAC 58.868 60.000 0.00 0.00 0.00 3.18
3647 7520 0.722676 TCCCCTCATACCCCTTCACT 59.277 55.000 0.00 0.00 0.00 3.41
3648 7521 1.132500 CCCCTCATACCCCTTCACTC 58.868 60.000 0.00 0.00 0.00 3.51
3649 7522 1.132500 CCCTCATACCCCTTCACTCC 58.868 60.000 0.00 0.00 0.00 3.85
3650 7523 1.132500 CCTCATACCCCTTCACTCCC 58.868 60.000 0.00 0.00 0.00 4.30
3651 7524 1.344496 CCTCATACCCCTTCACTCCCT 60.344 57.143 0.00 0.00 0.00 4.20
3652 7525 2.482494 CTCATACCCCTTCACTCCCTT 58.518 52.381 0.00 0.00 0.00 3.95
3653 7526 2.171448 CTCATACCCCTTCACTCCCTTG 59.829 54.545 0.00 0.00 0.00 3.61
3654 7527 0.919710 ATACCCCTTCACTCCCTTGC 59.080 55.000 0.00 0.00 0.00 4.01
3655 7528 1.205460 TACCCCTTCACTCCCTTGCC 61.205 60.000 0.00 0.00 0.00 4.52
3656 7529 2.045926 CCCTTCACTCCCTTGCCG 60.046 66.667 0.00 0.00 0.00 5.69
3657 7530 2.747855 CCTTCACTCCCTTGCCGC 60.748 66.667 0.00 0.00 0.00 6.53
3658 7531 2.747855 CTTCACTCCCTTGCCGCC 60.748 66.667 0.00 0.00 0.00 6.13
3659 7532 3.551496 CTTCACTCCCTTGCCGCCA 62.551 63.158 0.00 0.00 0.00 5.69
3660 7533 3.842925 TTCACTCCCTTGCCGCCAC 62.843 63.158 0.00 0.00 0.00 5.01
3730 7603 3.296054 GGATCTCGACGCCCGGAT 61.296 66.667 0.73 0.00 39.14 4.18
3731 7604 2.255856 GATCTCGACGCCCGGATC 59.744 66.667 0.73 0.00 37.60 3.36
3732 7605 3.596667 GATCTCGACGCCCGGATCG 62.597 68.421 0.73 9.92 36.24 3.69
3733 7606 4.843719 TCTCGACGCCCGGATCGA 62.844 66.667 20.15 19.96 44.68 3.59
3734 7607 3.661131 CTCGACGCCCGGATCGAT 61.661 66.667 20.81 0.00 45.63 3.59
3735 7608 3.596667 CTCGACGCCCGGATCGATC 62.597 68.421 20.81 17.36 45.63 3.69
3736 7609 4.702081 CGACGCCCGGATCGATCC 62.702 72.222 31.04 31.04 40.86 3.36
3737 7610 4.359455 GACGCCCGGATCGATCCC 62.359 72.222 33.51 20.94 44.24 3.85
3740 7613 4.359455 GCCCGGATCGATCCCGTC 62.359 72.222 33.51 17.35 45.14 4.79
3760 7633 4.301027 CCTGCGGGCCGGAGTATC 62.301 72.222 39.08 18.33 43.50 2.24
3761 7634 4.647615 CTGCGGGCCGGAGTATCG 62.648 72.222 35.58 14.27 40.30 2.92
3764 7637 3.991051 CGGGCCGGAGTATCGCAT 61.991 66.667 20.56 0.00 34.37 4.73
3765 7638 2.048127 GGGCCGGAGTATCGCATC 60.048 66.667 5.05 0.00 34.37 3.91
3766 7639 2.430921 GGCCGGAGTATCGCATCG 60.431 66.667 5.05 0.00 34.37 3.84
3767 7640 2.430921 GCCGGAGTATCGCATCGG 60.431 66.667 5.05 0.00 43.13 4.18
3768 7641 3.039988 CCGGAGTATCGCATCGGT 58.960 61.111 0.00 0.00 36.38 4.69
3769 7642 1.371758 CCGGAGTATCGCATCGGTG 60.372 63.158 0.00 0.00 36.38 4.94
3770 7643 1.371758 CGGAGTATCGCATCGGTGG 60.372 63.158 0.00 0.00 34.37 4.61
3771 7644 1.664965 GGAGTATCGCATCGGTGGC 60.665 63.158 0.00 0.00 34.37 5.01
3772 7645 1.664965 GAGTATCGCATCGGTGGCC 60.665 63.158 0.00 0.00 0.00 5.36
3773 7646 2.088674 GAGTATCGCATCGGTGGCCT 62.089 60.000 3.32 0.00 0.00 5.19
3774 7647 1.956170 GTATCGCATCGGTGGCCTG 60.956 63.158 3.32 0.00 0.00 4.85
3775 7648 3.807631 TATCGCATCGGTGGCCTGC 62.808 63.158 3.32 3.64 0.00 4.85
3779 7652 4.552365 CATCGGTGGCCTGCGGAT 62.552 66.667 3.32 9.54 0.00 4.18
3780 7653 4.241555 ATCGGTGGCCTGCGGATC 62.242 66.667 3.32 0.00 0.00 3.36
3783 7656 4.115199 GGTGGCCTGCGGATCCTT 62.115 66.667 10.75 0.00 0.00 3.36
3784 7657 2.825836 GTGGCCTGCGGATCCTTG 60.826 66.667 10.75 0.00 0.00 3.61
3785 7658 4.113815 TGGCCTGCGGATCCTTGG 62.114 66.667 10.75 9.94 0.00 3.61
3879 7752 4.436998 CGGGTCGCTGGTGGAGTC 62.437 72.222 0.00 0.00 0.00 3.36
3880 7753 4.083862 GGGTCGCTGGTGGAGTCC 62.084 72.222 0.73 0.73 0.00 3.85
3881 7754 4.436998 GGTCGCTGGTGGAGTCCG 62.437 72.222 4.30 0.00 0.00 4.79
3882 7755 4.436998 GTCGCTGGTGGAGTCCGG 62.437 72.222 4.30 0.00 36.96 5.14
3886 7759 3.402681 CTGGTGGAGTCCGGCCAT 61.403 66.667 21.22 0.00 37.81 4.40
3887 7760 3.687321 CTGGTGGAGTCCGGCCATG 62.687 68.421 21.22 13.52 37.81 3.66
3888 7761 4.489771 GGTGGAGTCCGGCCATGG 62.490 72.222 7.63 7.63 37.81 3.66
3909 7782 3.642755 GGTGCTCCGTTGTGTCTG 58.357 61.111 0.00 0.00 0.00 3.51
3910 7783 1.069090 GGTGCTCCGTTGTGTCTGA 59.931 57.895 0.00 0.00 0.00 3.27
3911 7784 0.320771 GGTGCTCCGTTGTGTCTGAT 60.321 55.000 0.00 0.00 0.00 2.90
3912 7785 1.071605 GTGCTCCGTTGTGTCTGATC 58.928 55.000 0.00 0.00 0.00 2.92
3913 7786 0.969149 TGCTCCGTTGTGTCTGATCT 59.031 50.000 0.00 0.00 0.00 2.75
3914 7787 1.337167 TGCTCCGTTGTGTCTGATCTG 60.337 52.381 0.00 0.00 0.00 2.90
3915 7788 2.001812 CTCCGTTGTGTCTGATCTGG 57.998 55.000 0.00 0.00 0.00 3.86
3916 7789 1.546029 CTCCGTTGTGTCTGATCTGGA 59.454 52.381 0.00 0.00 0.00 3.86
3917 7790 1.546029 TCCGTTGTGTCTGATCTGGAG 59.454 52.381 0.00 0.00 0.00 3.86
3918 7791 1.404717 CCGTTGTGTCTGATCTGGAGG 60.405 57.143 0.00 0.00 0.00 4.30
3919 7792 1.273606 CGTTGTGTCTGATCTGGAGGT 59.726 52.381 0.00 0.00 0.00 3.85
3920 7793 2.289072 CGTTGTGTCTGATCTGGAGGTT 60.289 50.000 0.00 0.00 0.00 3.50
3921 7794 3.330267 GTTGTGTCTGATCTGGAGGTTC 58.670 50.000 0.00 0.00 0.00 3.62
3922 7795 1.902508 TGTGTCTGATCTGGAGGTTCC 59.097 52.381 0.00 0.00 36.96 3.62
3923 7796 1.208293 GTGTCTGATCTGGAGGTTCCC 59.792 57.143 0.00 0.00 35.03 3.97
3924 7797 0.833949 GTCTGATCTGGAGGTTCCCC 59.166 60.000 0.00 0.00 35.03 4.81
3925 7798 0.719015 TCTGATCTGGAGGTTCCCCT 59.281 55.000 0.00 0.00 46.66 4.79
3926 7799 1.081174 TCTGATCTGGAGGTTCCCCTT 59.919 52.381 0.00 0.00 42.86 3.95
3927 7800 1.488393 CTGATCTGGAGGTTCCCCTTC 59.512 57.143 0.00 0.00 42.86 3.46
3928 7801 0.840617 GATCTGGAGGTTCCCCTTCC 59.159 60.000 0.00 0.00 42.86 3.46
3929 7802 0.423544 ATCTGGAGGTTCCCCTTCCT 59.576 55.000 0.00 0.00 42.86 3.36
3930 7803 0.252742 TCTGGAGGTTCCCCTTCCTC 60.253 60.000 2.96 2.96 42.86 3.71
3932 7805 4.922067 GAGGTTCCCCTTCCTCCT 57.078 61.111 0.00 0.00 42.86 3.69
3933 7806 2.302019 GAGGTTCCCCTTCCTCCTG 58.698 63.158 0.00 0.00 42.86 3.86
3934 7807 1.916206 GAGGTTCCCCTTCCTCCTGC 61.916 65.000 0.00 0.00 42.86 4.85
3935 7808 1.925972 GGTTCCCCTTCCTCCTGCT 60.926 63.158 0.00 0.00 0.00 4.24
3936 7809 1.301293 GTTCCCCTTCCTCCTGCTG 59.699 63.158 0.00 0.00 0.00 4.41
3937 7810 2.606587 TTCCCCTTCCTCCTGCTGC 61.607 63.158 0.00 0.00 0.00 5.25
3938 7811 4.120755 CCCCTTCCTCCTGCTGCC 62.121 72.222 0.00 0.00 0.00 4.85
3939 7812 3.013932 CCCTTCCTCCTGCTGCCT 61.014 66.667 0.00 0.00 0.00 4.75
3940 7813 2.588989 CCTTCCTCCTGCTGCCTC 59.411 66.667 0.00 0.00 0.00 4.70
3941 7814 1.994507 CCTTCCTCCTGCTGCCTCT 60.995 63.158 0.00 0.00 0.00 3.69
3942 7815 1.521616 CTTCCTCCTGCTGCCTCTC 59.478 63.158 0.00 0.00 0.00 3.20
3943 7816 0.977108 CTTCCTCCTGCTGCCTCTCT 60.977 60.000 0.00 0.00 0.00 3.10
3944 7817 0.975040 TTCCTCCTGCTGCCTCTCTC 60.975 60.000 0.00 0.00 0.00 3.20
3945 7818 2.784356 CCTCCTGCTGCCTCTCTCG 61.784 68.421 0.00 0.00 0.00 4.04
3946 7819 2.036414 TCCTGCTGCCTCTCTCGT 59.964 61.111 0.00 0.00 0.00 4.18
3947 7820 2.003658 CTCCTGCTGCCTCTCTCGTC 62.004 65.000 0.00 0.00 0.00 4.20
3948 7821 2.101965 CTGCTGCCTCTCTCGTCG 59.898 66.667 0.00 0.00 0.00 5.12
3949 7822 2.673341 TGCTGCCTCTCTCGTCGT 60.673 61.111 0.00 0.00 0.00 4.34
3950 7823 2.101380 GCTGCCTCTCTCGTCGTC 59.899 66.667 0.00 0.00 0.00 4.20
3951 7824 2.795297 CTGCCTCTCTCGTCGTCC 59.205 66.667 0.00 0.00 0.00 4.79
3952 7825 2.750637 TGCCTCTCTCGTCGTCCC 60.751 66.667 0.00 0.00 0.00 4.46
3953 7826 3.878519 GCCTCTCTCGTCGTCCCG 61.879 72.222 0.00 0.00 0.00 5.14
3954 7827 3.203412 CCTCTCTCGTCGTCCCGG 61.203 72.222 0.00 0.00 0.00 5.73
3955 7828 2.436292 CTCTCTCGTCGTCCCGGT 60.436 66.667 0.00 0.00 0.00 5.28
3956 7829 2.033141 TCTCTCGTCGTCCCGGTT 59.967 61.111 0.00 0.00 0.00 4.44
3957 7830 2.178521 CTCTCGTCGTCCCGGTTG 59.821 66.667 0.00 0.00 0.00 3.77
3958 7831 2.595463 TCTCGTCGTCCCGGTTGT 60.595 61.111 0.00 0.00 0.00 3.32
3959 7832 2.138656 CTCTCGTCGTCCCGGTTGTT 62.139 60.000 0.00 0.00 0.00 2.83
3960 7833 1.300388 CTCGTCGTCCCGGTTGTTT 60.300 57.895 0.00 0.00 0.00 2.83
3961 7834 1.554042 CTCGTCGTCCCGGTTGTTTG 61.554 60.000 0.00 0.00 0.00 2.93
3962 7835 2.635338 GTCGTCCCGGTTGTTTGC 59.365 61.111 0.00 0.00 0.00 3.68
3963 7836 2.968156 TCGTCCCGGTTGTTTGCG 60.968 61.111 0.00 0.00 0.00 4.85
3964 7837 4.020378 CGTCCCGGTTGTTTGCGG 62.020 66.667 0.00 0.00 0.00 5.69
3965 7838 4.337060 GTCCCGGTTGTTTGCGGC 62.337 66.667 0.00 0.00 0.00 6.53
3966 7839 4.572571 TCCCGGTTGTTTGCGGCT 62.573 61.111 0.00 0.00 0.00 5.52
3967 7840 4.341502 CCCGGTTGTTTGCGGCTG 62.342 66.667 0.00 0.00 0.00 4.85
3968 7841 4.999939 CCGGTTGTTTGCGGCTGC 63.000 66.667 11.65 11.65 43.20 5.25
3981 7854 4.479993 GCTGCAGGCTCCGGTGAT 62.480 66.667 17.12 0.00 38.06 3.06
3982 7855 2.270205 CTGCAGGCTCCGGTGATT 59.730 61.111 5.57 0.00 0.00 2.57
3983 7856 2.046023 TGCAGGCTCCGGTGATTG 60.046 61.111 7.92 5.57 0.00 2.67
3984 7857 2.045926 GCAGGCTCCGGTGATTGT 60.046 61.111 7.92 0.00 0.00 2.71
3985 7858 2.401766 GCAGGCTCCGGTGATTGTG 61.402 63.158 7.92 0.00 0.00 3.33
3986 7859 1.296392 CAGGCTCCGGTGATTGTGA 59.704 57.895 7.92 0.00 0.00 3.58
3987 7860 0.107508 CAGGCTCCGGTGATTGTGAT 60.108 55.000 7.92 0.00 0.00 3.06
3988 7861 0.179000 AGGCTCCGGTGATTGTGATC 59.821 55.000 7.92 0.00 0.00 2.92
3989 7862 0.815615 GGCTCCGGTGATTGTGATCC 60.816 60.000 7.92 0.00 0.00 3.36
3990 7863 0.815615 GCTCCGGTGATTGTGATCCC 60.816 60.000 7.92 0.00 0.00 3.85
3991 7864 0.833287 CTCCGGTGATTGTGATCCCT 59.167 55.000 0.00 0.00 0.00 4.20
3992 7865 0.541392 TCCGGTGATTGTGATCCCTG 59.459 55.000 0.00 0.00 0.00 4.45
3993 7866 0.464373 CCGGTGATTGTGATCCCTGG 60.464 60.000 0.00 0.00 0.00 4.45
3994 7867 0.253044 CGGTGATTGTGATCCCTGGT 59.747 55.000 0.00 0.00 0.00 4.00
3995 7868 1.755179 GGTGATTGTGATCCCTGGTG 58.245 55.000 0.00 0.00 0.00 4.17
3996 7869 1.683011 GGTGATTGTGATCCCTGGTGG 60.683 57.143 0.00 0.00 0.00 4.61
3997 7870 1.004745 GTGATTGTGATCCCTGGTGGT 59.995 52.381 0.00 0.00 34.77 4.16
3998 7871 1.004628 TGATTGTGATCCCTGGTGGTG 59.995 52.381 0.00 0.00 34.77 4.17
3999 7872 1.004745 GATTGTGATCCCTGGTGGTGT 59.995 52.381 0.00 0.00 34.77 4.16
4000 7873 1.735926 TTGTGATCCCTGGTGGTGTA 58.264 50.000 0.00 0.00 34.77 2.90
4001 7874 0.981183 TGTGATCCCTGGTGGTGTAC 59.019 55.000 0.00 0.00 34.77 2.90
4002 7875 1.276622 GTGATCCCTGGTGGTGTACT 58.723 55.000 0.00 0.00 34.77 2.73
4003 7876 1.628846 GTGATCCCTGGTGGTGTACTT 59.371 52.381 0.00 0.00 34.77 2.24
4004 7877 2.039879 GTGATCCCTGGTGGTGTACTTT 59.960 50.000 0.00 0.00 34.77 2.66
4005 7878 2.039746 TGATCCCTGGTGGTGTACTTTG 59.960 50.000 0.00 0.00 34.77 2.77
4006 7879 0.768622 TCCCTGGTGGTGTACTTTGG 59.231 55.000 0.00 0.00 34.77 3.28
4007 7880 0.251165 CCCTGGTGGTGTACTTTGGG 60.251 60.000 0.00 0.00 0.00 4.12
4008 7881 0.476771 CCTGGTGGTGTACTTTGGGT 59.523 55.000 0.00 0.00 0.00 4.51
4009 7882 1.544759 CCTGGTGGTGTACTTTGGGTC 60.545 57.143 0.00 0.00 0.00 4.46
4010 7883 1.420138 CTGGTGGTGTACTTTGGGTCT 59.580 52.381 0.00 0.00 0.00 3.85
4011 7884 1.142060 TGGTGGTGTACTTTGGGTCTG 59.858 52.381 0.00 0.00 0.00 3.51
4012 7885 1.544759 GGTGGTGTACTTTGGGTCTGG 60.545 57.143 0.00 0.00 0.00 3.86
4013 7886 0.768622 TGGTGTACTTTGGGTCTGGG 59.231 55.000 0.00 0.00 0.00 4.45
4014 7887 0.037734 GGTGTACTTTGGGTCTGGGG 59.962 60.000 0.00 0.00 0.00 4.96
4015 7888 0.037734 GTGTACTTTGGGTCTGGGGG 59.962 60.000 0.00 0.00 0.00 5.40
4016 7889 0.104356 TGTACTTTGGGTCTGGGGGA 60.104 55.000 0.00 0.00 0.00 4.81
4017 7890 0.618981 GTACTTTGGGTCTGGGGGAG 59.381 60.000 0.00 0.00 0.00 4.30
4018 7891 0.494551 TACTTTGGGTCTGGGGGAGA 59.505 55.000 0.00 0.00 0.00 3.71
4031 7904 2.434774 GGAGACCTTGGCCGGTTT 59.565 61.111 1.90 0.00 37.42 3.27
4032 7905 1.971695 GGAGACCTTGGCCGGTTTG 60.972 63.158 1.90 0.00 37.42 2.93
4033 7906 1.228154 GAGACCTTGGCCGGTTTGT 60.228 57.895 1.90 0.00 37.42 2.83
4034 7907 1.228154 AGACCTTGGCCGGTTTGTC 60.228 57.895 1.90 3.47 37.42 3.18
4035 7908 2.203437 ACCTTGGCCGGTTTGTCC 60.203 61.111 1.90 0.00 31.94 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.690778 GGTGCTTCGGTGCATGGAC 61.691 63.158 9.16 9.16 45.23 4.02
4 5 3.803082 CGGTGCTTCGGTGCATGG 61.803 66.667 6.54 0.00 45.23 3.66
25 26 7.434013 GCGGTGAACAGAAAATTAGAAGAAAAA 59.566 33.333 0.00 0.00 0.00 1.94
26 27 6.915843 GCGGTGAACAGAAAATTAGAAGAAAA 59.084 34.615 0.00 0.00 0.00 2.29
27 28 6.435428 GCGGTGAACAGAAAATTAGAAGAAA 58.565 36.000 0.00 0.00 0.00 2.52
28 29 5.333798 CGCGGTGAACAGAAAATTAGAAGAA 60.334 40.000 0.00 0.00 0.00 2.52
29 30 4.151689 CGCGGTGAACAGAAAATTAGAAGA 59.848 41.667 0.00 0.00 0.00 2.87
30 31 4.394795 CGCGGTGAACAGAAAATTAGAAG 58.605 43.478 0.00 0.00 0.00 2.85
33 34 2.482721 ACCGCGGTGAACAGAAAATTAG 59.517 45.455 33.75 0.00 0.00 1.73
40 41 2.260434 GCTACCGCGGTGAACAGA 59.740 61.111 40.02 18.79 0.00 3.41
43 44 1.153628 ATCTGCTACCGCGGTGAAC 60.154 57.895 40.02 27.35 43.19 3.18
51 52 1.007964 CCGAGCTCATCTGCTACCG 60.008 63.158 15.40 0.00 44.17 4.02
54 55 0.955178 GCTACCGAGCTCATCTGCTA 59.045 55.000 15.40 0.00 45.98 3.49
65 66 1.222115 GCGGCTATTTGGCTACCGAG 61.222 60.000 3.58 0.00 46.71 4.63
67 68 1.522806 TGCGGCTATTTGGCTACCG 60.523 57.895 0.00 0.00 46.50 4.02
114 115 9.159254 TGAAGTATGAATATTCAGGGTAGTGAT 57.841 33.333 21.97 6.05 41.08 3.06
116 117 9.265901 CTTGAAGTATGAATATTCAGGGTAGTG 57.734 37.037 21.97 6.73 41.08 2.74
156 165 8.188531 ACATATGCTTTATTGTGTTTGCAATC 57.811 30.769 0.00 0.00 39.50 2.67
270 279 0.608035 ATACCCCGCACCTTGTTGTG 60.608 55.000 0.00 0.00 39.29 3.33
277 289 1.633774 CTAGATGATACCCCGCACCT 58.366 55.000 0.00 0.00 0.00 4.00
279 291 0.679505 TGCTAGATGATACCCCGCAC 59.320 55.000 0.00 0.00 0.00 5.34
280 292 1.644509 ATGCTAGATGATACCCCGCA 58.355 50.000 0.00 0.00 0.00 5.69
282 294 5.860941 AAGATATGCTAGATGATACCCCG 57.139 43.478 0.00 0.00 0.00 5.73
283 295 8.079211 TGTTAAGATATGCTAGATGATACCCC 57.921 38.462 0.00 0.00 0.00 4.95
284 296 9.539825 CATGTTAAGATATGCTAGATGATACCC 57.460 37.037 0.00 0.00 0.00 3.69
322 570 5.741093 GCATGTGTGAGACATATGAGATGGA 60.741 44.000 10.38 0.00 46.50 3.41
326 574 3.451902 TGGCATGTGTGAGACATATGAGA 59.548 43.478 10.38 0.81 46.50 3.27
327 575 3.558829 GTGGCATGTGTGAGACATATGAG 59.441 47.826 10.38 0.00 46.50 2.90
334 582 0.322975 AGAGGTGGCATGTGTGAGAC 59.677 55.000 0.00 0.00 0.00 3.36
337 585 3.719268 AATAAGAGGTGGCATGTGTGA 57.281 42.857 0.00 0.00 0.00 3.58
344 592 4.769488 TGTGCATTTAAATAAGAGGTGGCA 59.231 37.500 0.00 1.12 0.00 4.92
346 594 5.807011 GCTTGTGCATTTAAATAAGAGGTGG 59.193 40.000 11.09 0.00 39.41 4.61
365 613 7.281774 CCTTGATAATGTAGATGTCTTGCTTGT 59.718 37.037 0.00 0.00 0.00 3.16
373 621 4.058124 TGCGCCTTGATAATGTAGATGTC 58.942 43.478 4.18 0.00 0.00 3.06
383 631 4.645762 TTAATTGCATGCGCCTTGATAA 57.354 36.364 14.09 0.00 37.32 1.75
390 638 2.813061 AGTTGATTAATTGCATGCGCC 58.187 42.857 14.09 0.00 37.32 6.53
402 650 8.226819 TGTGGTGTAATGTGAAAAGTTGATTA 57.773 30.769 0.00 0.00 0.00 1.75
409 657 4.869215 TGCATGTGGTGTAATGTGAAAAG 58.131 39.130 0.00 0.00 0.00 2.27
413 661 3.419943 ACATGCATGTGGTGTAATGTGA 58.580 40.909 30.92 0.00 40.03 3.58
417 665 3.282021 GAGGACATGCATGTGGTGTAAT 58.718 45.455 35.92 9.61 41.95 1.89
420 668 0.322816 GGAGGACATGCATGTGGTGT 60.323 55.000 35.92 17.09 41.95 4.16
422 670 0.322816 GTGGAGGACATGCATGTGGT 60.323 55.000 35.92 22.15 41.95 4.16
424 672 1.674441 GATGTGGAGGACATGCATGTG 59.326 52.381 35.92 11.85 45.90 3.21
451 699 1.267806 AGTTGAAAGGTTGCATGAGCG 59.732 47.619 0.00 0.00 46.23 5.03
481 729 0.035152 TGGAGGCTTGCATGTGGTAG 60.035 55.000 1.14 0.00 0.00 3.18
482 730 0.322456 GTGGAGGCTTGCATGTGGTA 60.322 55.000 0.00 0.00 0.00 3.25
483 731 1.604593 GTGGAGGCTTGCATGTGGT 60.605 57.895 0.00 0.00 0.00 4.16
520 768 8.637108 ATTAAAAATTAATGGGGTGAAGGGAT 57.363 30.769 0.00 0.00 0.00 3.85
521 769 8.456221 AATTAAAAATTAATGGGGTGAAGGGA 57.544 30.769 0.00 0.00 0.00 4.20
522 770 9.527157 AAAATTAAAAATTAATGGGGTGAAGGG 57.473 29.630 0.00 0.00 0.00 3.95
578 827 3.303351 AAATGGAGGGTGGATGACATC 57.697 47.619 6.91 6.91 0.00 3.06
582 831 5.732331 AAAGATAAATGGAGGGTGGATGA 57.268 39.130 0.00 0.00 0.00 2.92
648 897 3.605634 AGGCGTGTGATGTGCTTATAAA 58.394 40.909 0.00 0.00 0.00 1.40
649 898 3.260475 AGGCGTGTGATGTGCTTATAA 57.740 42.857 0.00 0.00 0.00 0.98
650 899 2.979814 AGGCGTGTGATGTGCTTATA 57.020 45.000 0.00 0.00 0.00 0.98
651 900 2.979814 TAGGCGTGTGATGTGCTTAT 57.020 45.000 0.00 0.00 0.00 1.73
653 902 2.113860 ATTAGGCGTGTGATGTGCTT 57.886 45.000 0.00 0.00 0.00 3.91
654 903 2.113860 AATTAGGCGTGTGATGTGCT 57.886 45.000 0.00 0.00 0.00 4.40
655 904 2.477863 GGAAATTAGGCGTGTGATGTGC 60.478 50.000 0.00 0.00 0.00 4.57
738 1008 2.875933 TCACGGTTCAGTCCAAAACATC 59.124 45.455 0.00 0.00 0.00 3.06
741 1011 3.768468 TTTCACGGTTCAGTCCAAAAC 57.232 42.857 0.00 0.00 0.00 2.43
742 1012 4.785511 TTTTTCACGGTTCAGTCCAAAA 57.214 36.364 0.00 0.00 0.00 2.44
814 1091 0.384669 GCTTCAAGCATGAGATGGGC 59.615 55.000 3.89 0.00 41.89 5.36
817 1094 0.315951 CGCGCTTCAAGCATGAGATG 60.316 55.000 10.73 0.00 42.58 2.90
834 1274 0.520847 GGAGCGTACCTACCTATCGC 59.479 60.000 0.00 0.00 45.82 4.58
839 1279 3.240310 ACATATGGAGCGTACCTACCT 57.760 47.619 7.80 0.00 0.00 3.08
858 1298 4.161565 TGGTCACTTGGTCTATGTGGATAC 59.838 45.833 2.94 0.00 35.69 2.24
859 1299 4.358214 TGGTCACTTGGTCTATGTGGATA 58.642 43.478 2.94 0.00 35.69 2.59
860 1300 3.181329 TGGTCACTTGGTCTATGTGGAT 58.819 45.455 2.94 0.00 35.69 3.41
861 1301 2.615391 TGGTCACTTGGTCTATGTGGA 58.385 47.619 2.94 0.00 35.69 4.02
862 1302 3.074412 GTTGGTCACTTGGTCTATGTGG 58.926 50.000 2.94 0.00 35.69 4.17
863 1303 3.074412 GGTTGGTCACTTGGTCTATGTG 58.926 50.000 0.00 0.00 36.16 3.21
864 1304 2.708861 TGGTTGGTCACTTGGTCTATGT 59.291 45.455 0.00 0.00 0.00 2.29
932 1372 2.429478 CCGCTGCCATCATGAATATGA 58.571 47.619 0.00 0.00 46.67 2.15
1069 2066 2.579201 CGAGTGGTAGCACCTGGG 59.421 66.667 20.99 4.82 39.58 4.45
1083 2080 4.394712 AGCTTGAACCCCCGCGAG 62.395 66.667 8.23 0.00 0.00 5.03
1120 2117 3.207669 CGGGATCTTGCTGCTGCC 61.208 66.667 13.47 0.00 38.71 4.85
1232 2229 1.009675 CCGCTCATGTTTATGGCGC 60.010 57.895 0.00 0.00 44.87 6.53
1279 2288 0.249741 AGCTTGTACGGCAGTTCGTT 60.250 50.000 12.10 0.00 43.59 3.85
1280 2289 0.944311 CAGCTTGTACGGCAGTTCGT 60.944 55.000 12.10 0.00 45.88 3.85
1284 2293 0.602905 GGTTCAGCTTGTACGGCAGT 60.603 55.000 12.10 0.00 0.00 4.40
1285 2294 1.298859 GGGTTCAGCTTGTACGGCAG 61.299 60.000 12.10 5.33 0.00 4.85
1290 2328 0.250166 ACCACGGGTTCAGCTTGTAC 60.250 55.000 0.00 0.00 27.29 2.90
1294 2332 0.106918 TTCAACCACGGGTTCAGCTT 60.107 50.000 5.45 0.00 43.05 3.74
1295 2333 0.818040 GTTCAACCACGGGTTCAGCT 60.818 55.000 5.45 0.00 43.05 4.24
1544 2604 4.827304 TCAACAATTTCAACATCGCTGA 57.173 36.364 0.00 0.00 0.00 4.26
1551 2611 3.806521 CGGGCAAATCAACAATTTCAACA 59.193 39.130 0.00 0.00 35.32 3.33
1552 2612 3.807071 ACGGGCAAATCAACAATTTCAAC 59.193 39.130 0.00 0.00 35.32 3.18
1553 2613 3.806521 CACGGGCAAATCAACAATTTCAA 59.193 39.130 0.00 0.00 35.32 2.69
1554 2614 3.068732 TCACGGGCAAATCAACAATTTCA 59.931 39.130 0.00 0.00 35.32 2.69
1555 2615 3.648009 TCACGGGCAAATCAACAATTTC 58.352 40.909 0.00 0.00 35.32 2.17
1556 2616 3.742433 TCACGGGCAAATCAACAATTT 57.258 38.095 0.00 0.00 38.11 1.82
1557 2617 3.389221 GTTCACGGGCAAATCAACAATT 58.611 40.909 0.00 0.00 0.00 2.32
1558 2618 2.606795 CGTTCACGGGCAAATCAACAAT 60.607 45.455 0.00 0.00 35.37 2.71
1559 2619 1.268794 CGTTCACGGGCAAATCAACAA 60.269 47.619 0.00 0.00 35.37 2.83
1702 2796 7.102993 TCGAATGAGTTAGGATGATTTGTTGA 58.897 34.615 0.00 0.00 0.00 3.18
1705 2799 7.467811 GCATTCGAATGAGTTAGGATGATTTGT 60.468 37.037 36.10 0.00 38.70 2.83
1810 2920 2.074576 GTAGCCTCCGACTCCAAAAAC 58.925 52.381 0.00 0.00 0.00 2.43
1811 2921 1.975680 AGTAGCCTCCGACTCCAAAAA 59.024 47.619 0.00 0.00 0.00 1.94
1812 2922 1.549170 GAGTAGCCTCCGACTCCAAAA 59.451 52.381 0.00 0.00 37.64 2.44
1895 3005 4.940046 AGATGTGGACATGTCAAGCTTTAG 59.060 41.667 26.47 0.00 36.57 1.85
1911 3021 3.525537 ACAAAGTAGCGATGAGATGTGG 58.474 45.455 0.00 0.00 0.00 4.17
1917 3027 6.706055 TCAAGTTTACAAAGTAGCGATGAG 57.294 37.500 0.00 0.00 0.00 2.90
1920 3030 7.907214 AGAATCAAGTTTACAAAGTAGCGAT 57.093 32.000 0.00 0.00 0.00 4.58
1926 3036 9.463443 GCAACAATAGAATCAAGTTTACAAAGT 57.537 29.630 0.00 0.00 0.00 2.66
1948 3066 7.967854 TGCATATACACAATTAAGTCAAGCAAC 59.032 33.333 0.00 0.00 0.00 4.17
2000 3299 2.586425 AGTTGTTGACATGGGTTCCTG 58.414 47.619 0.00 0.00 0.00 3.86
2059 3358 0.170561 ATCGTACCTGTGTCGTCTGC 59.829 55.000 0.00 0.00 0.00 4.26
2062 3361 4.033684 GTGATAATCGTACCTGTGTCGTC 58.966 47.826 0.00 0.00 0.00 4.20
2063 3362 3.181493 GGTGATAATCGTACCTGTGTCGT 60.181 47.826 0.00 0.00 0.00 4.34
2094 3405 5.010112 CCATCCAGTGGTAGTAGTAGTCATG 59.990 48.000 9.54 0.64 43.44 3.07
2164 3650 6.952773 TTGAACTAACATGGCACTAGTTTT 57.047 33.333 15.60 3.93 36.30 2.43
2172 3658 8.836413 GCTATTAGTATTTGAACTAACATGGCA 58.164 33.333 0.00 0.00 42.98 4.92
2208 5998 6.369615 AGTTACCTATTTGAACAATACGCGTT 59.630 34.615 20.78 0.00 0.00 4.84
2237 6038 5.229423 CAACCGACAAACCAATGATCAAAT 58.771 37.500 0.00 0.00 0.00 2.32
2241 6042 2.228822 AGCAACCGACAAACCAATGATC 59.771 45.455 0.00 0.00 0.00 2.92
2288 6089 2.673368 GTGATTAGAACCGCACCAAGAG 59.327 50.000 0.00 0.00 0.00 2.85
2337 6138 5.923684 ACTAAAGAACTTCTCTCTCAAAGCG 59.076 40.000 0.00 0.00 31.02 4.68
2392 6193 3.260380 GCTATGTCTGCCCTGTGAGATAT 59.740 47.826 0.00 0.00 0.00 1.63
2532 6334 5.301551 TGACTTTTTGATAGCCACAACATGT 59.698 36.000 0.00 0.00 0.00 3.21
2595 6398 0.872021 GCGAGAGTATGGCAACCTCG 60.872 60.000 19.50 19.50 46.48 4.63
2613 6416 9.970395 TTCACAATATTCCTATGATTGATTTGC 57.030 29.630 1.10 0.00 35.12 3.68
2727 6530 3.012518 AGGCAATGATCCTTGTTCTTCG 58.987 45.455 11.69 0.00 0.00 3.79
2802 6605 2.093235 AGGGACAGAAATAGCAGAGTGC 60.093 50.000 0.00 0.00 45.46 4.40
3027 6839 3.305398 AGCAGTTAGACAAGAAGGACG 57.695 47.619 0.00 0.00 0.00 4.79
3040 6852 3.705072 GGCTTCCTCCTAGTAAGCAGTTA 59.295 47.826 14.48 0.00 45.86 2.24
3197 7010 5.508224 CAGTTTACGCATAAAGCAGCTAAAC 59.492 40.000 0.00 0.00 46.13 2.01
3207 7020 5.106712 CCTCTGCTTTCAGTTTACGCATAAA 60.107 40.000 0.00 0.00 41.10 1.40
3239 7054 0.325933 TCTCCACTTGCCTCATGGTG 59.674 55.000 0.00 0.00 34.89 4.17
3328 7143 6.873605 TGGATAGTCCATTGCTACATATTTCG 59.126 38.462 0.00 0.00 42.67 3.46
3392 7218 9.207868 AGGAACTCTTCTTCTAAGCTATAACAT 57.792 33.333 0.00 0.00 0.00 2.71
3453 7326 1.017387 GAACCCATCGAGTGATTGGC 58.983 55.000 0.00 0.00 40.31 4.52
3487 7360 0.508641 CACACTACAGCTTCACACGC 59.491 55.000 0.00 0.00 0.00 5.34
3488 7361 1.852942 ACACACTACAGCTTCACACG 58.147 50.000 0.00 0.00 0.00 4.49
3555 7428 7.593273 CGGCAAAAATTAATACAACTGAGTTCA 59.407 33.333 0.00 0.00 0.00 3.18
3562 7435 6.004408 ACGACGGCAAAAATTAATACAACT 57.996 33.333 0.00 0.00 0.00 3.16
3563 7436 5.852229 TGACGACGGCAAAAATTAATACAAC 59.148 36.000 0.00 0.00 0.00 3.32
3593 7466 3.792053 ATCGGATTGCCCTCGCGTC 62.792 63.158 5.77 0.00 38.08 5.19
3594 7467 3.792053 GATCGGATTGCCCTCGCGT 62.792 63.158 5.77 0.00 38.08 6.01
3595 7468 3.038417 GATCGGATTGCCCTCGCG 61.038 66.667 0.00 0.00 38.08 5.87
3596 7469 1.666234 GAGATCGGATTGCCCTCGC 60.666 63.158 0.00 0.00 0.00 5.03
3597 7470 0.038709 GAGAGATCGGATTGCCCTCG 60.039 60.000 0.00 0.00 0.00 4.63
3598 7471 0.038709 CGAGAGATCGGATTGCCCTC 60.039 60.000 0.00 0.00 0.00 4.30
3599 7472 2.045280 CGAGAGATCGGATTGCCCT 58.955 57.895 0.00 0.00 0.00 5.19
3600 7473 1.666234 GCGAGAGATCGGATTGCCC 60.666 63.158 0.00 0.00 0.00 5.36
3601 7474 1.666234 GGCGAGAGATCGGATTGCC 60.666 63.158 9.50 9.50 0.00 4.52
3602 7475 2.018866 CGGCGAGAGATCGGATTGC 61.019 63.158 0.00 0.00 0.00 3.56
3603 7476 2.018866 GCGGCGAGAGATCGGATTG 61.019 63.158 12.98 0.00 0.00 2.67
3604 7477 2.336809 GCGGCGAGAGATCGGATT 59.663 61.111 12.98 0.00 0.00 3.01
3605 7478 4.031719 CGCGGCGAGAGATCGGAT 62.032 66.667 19.16 0.00 0.00 4.18
3621 7494 4.301027 GTATGAGGGGAGGCGGCG 62.301 72.222 0.51 0.51 0.00 6.46
3622 7495 3.942439 GGTATGAGGGGAGGCGGC 61.942 72.222 0.00 0.00 0.00 6.53
3623 7496 3.242291 GGGTATGAGGGGAGGCGG 61.242 72.222 0.00 0.00 0.00 6.13
3624 7497 3.242291 GGGGTATGAGGGGAGGCG 61.242 72.222 0.00 0.00 0.00 5.52
3625 7498 1.386057 AAGGGGTATGAGGGGAGGC 60.386 63.158 0.00 0.00 0.00 4.70
3626 7499 0.030092 TGAAGGGGTATGAGGGGAGG 60.030 60.000 0.00 0.00 0.00 4.30
3627 7500 1.132500 GTGAAGGGGTATGAGGGGAG 58.868 60.000 0.00 0.00 0.00 4.30
3628 7501 0.722676 AGTGAAGGGGTATGAGGGGA 59.277 55.000 0.00 0.00 0.00 4.81
3629 7502 1.132500 GAGTGAAGGGGTATGAGGGG 58.868 60.000 0.00 0.00 0.00 4.79
3630 7503 1.132500 GGAGTGAAGGGGTATGAGGG 58.868 60.000 0.00 0.00 0.00 4.30
3631 7504 1.132500 GGGAGTGAAGGGGTATGAGG 58.868 60.000 0.00 0.00 0.00 3.86
3632 7505 2.171448 CAAGGGAGTGAAGGGGTATGAG 59.829 54.545 0.00 0.00 0.00 2.90
3633 7506 2.196595 CAAGGGAGTGAAGGGGTATGA 58.803 52.381 0.00 0.00 0.00 2.15
3634 7507 1.408822 GCAAGGGAGTGAAGGGGTATG 60.409 57.143 0.00 0.00 0.00 2.39
3635 7508 0.919710 GCAAGGGAGTGAAGGGGTAT 59.080 55.000 0.00 0.00 0.00 2.73
3636 7509 1.205460 GGCAAGGGAGTGAAGGGGTA 61.205 60.000 0.00 0.00 0.00 3.69
3637 7510 2.539081 GGCAAGGGAGTGAAGGGGT 61.539 63.158 0.00 0.00 0.00 4.95
3638 7511 2.356667 GGCAAGGGAGTGAAGGGG 59.643 66.667 0.00 0.00 0.00 4.79
3639 7512 2.045926 CGGCAAGGGAGTGAAGGG 60.046 66.667 0.00 0.00 0.00 3.95
3640 7513 2.747855 GCGGCAAGGGAGTGAAGG 60.748 66.667 0.00 0.00 0.00 3.46
3641 7514 2.747855 GGCGGCAAGGGAGTGAAG 60.748 66.667 3.07 0.00 0.00 3.02
3642 7515 3.565214 TGGCGGCAAGGGAGTGAA 61.565 61.111 10.22 0.00 0.00 3.18
3643 7516 4.329545 GTGGCGGCAAGGGAGTGA 62.330 66.667 15.50 0.00 0.00 3.41
3713 7586 3.270335 GATCCGGGCGTCGAGATCC 62.270 68.421 0.00 0.00 42.43 3.36
3714 7587 2.255856 GATCCGGGCGTCGAGATC 59.744 66.667 0.00 2.62 42.43 2.75
3715 7588 3.661131 CGATCCGGGCGTCGAGAT 61.661 66.667 16.36 0.00 42.43 2.75
3716 7589 4.843719 TCGATCCGGGCGTCGAGA 62.844 66.667 18.88 3.62 41.44 4.04
3719 7592 4.702081 GGATCGATCCGGGCGTCG 62.702 72.222 27.93 15.56 37.19 5.12
3744 7617 4.647615 CGATACTCCGGCCCGCAG 62.648 72.222 0.00 0.00 0.00 5.18
3747 7620 3.916392 GATGCGATACTCCGGCCCG 62.916 68.421 0.00 0.00 0.00 6.13
3748 7621 2.048127 GATGCGATACTCCGGCCC 60.048 66.667 0.00 0.00 0.00 5.80
3749 7622 2.430921 CGATGCGATACTCCGGCC 60.431 66.667 0.00 0.00 0.00 6.13
3750 7623 2.430921 CCGATGCGATACTCCGGC 60.431 66.667 0.00 0.00 33.47 6.13
3751 7624 1.371758 CACCGATGCGATACTCCGG 60.372 63.158 0.00 0.00 45.09 5.14
3752 7625 1.371758 CCACCGATGCGATACTCCG 60.372 63.158 0.00 0.00 0.00 4.63
3753 7626 1.664965 GCCACCGATGCGATACTCC 60.665 63.158 0.00 0.00 0.00 3.85
3754 7627 1.664965 GGCCACCGATGCGATACTC 60.665 63.158 0.00 0.00 0.00 2.59
3755 7628 2.134287 AGGCCACCGATGCGATACT 61.134 57.895 5.01 0.00 0.00 2.12
3756 7629 1.956170 CAGGCCACCGATGCGATAC 60.956 63.158 5.01 0.00 0.00 2.24
3757 7630 2.421314 CAGGCCACCGATGCGATA 59.579 61.111 5.01 0.00 0.00 2.92
3862 7735 4.436998 GACTCCACCAGCGACCCG 62.437 72.222 0.00 0.00 0.00 5.28
3863 7736 4.083862 GGACTCCACCAGCGACCC 62.084 72.222 0.00 0.00 0.00 4.46
3864 7737 4.436998 CGGACTCCACCAGCGACC 62.437 72.222 0.00 0.00 0.00 4.79
3865 7738 4.436998 CCGGACTCCACCAGCGAC 62.437 72.222 0.00 0.00 0.00 5.19
3869 7742 3.402681 ATGGCCGGACTCCACCAG 61.403 66.667 9.82 0.00 36.26 4.00
3870 7743 3.716195 CATGGCCGGACTCCACCA 61.716 66.667 9.82 3.17 36.26 4.17
3871 7744 4.489771 CCATGGCCGGACTCCACC 62.490 72.222 9.82 0.00 36.26 4.61
3892 7765 0.320771 ATCAGACACAACGGAGCACC 60.321 55.000 0.00 0.00 0.00 5.01
3893 7766 1.071605 GATCAGACACAACGGAGCAC 58.928 55.000 0.00 0.00 0.00 4.40
3894 7767 0.969149 AGATCAGACACAACGGAGCA 59.031 50.000 0.00 0.00 0.00 4.26
3895 7768 1.354040 CAGATCAGACACAACGGAGC 58.646 55.000 0.00 0.00 0.00 4.70
3896 7769 1.546029 TCCAGATCAGACACAACGGAG 59.454 52.381 0.00 0.00 0.00 4.63
3897 7770 1.546029 CTCCAGATCAGACACAACGGA 59.454 52.381 0.00 0.00 0.00 4.69
3898 7771 1.404717 CCTCCAGATCAGACACAACGG 60.405 57.143 0.00 0.00 0.00 4.44
3899 7772 1.273606 ACCTCCAGATCAGACACAACG 59.726 52.381 0.00 0.00 0.00 4.10
3900 7773 3.330267 GAACCTCCAGATCAGACACAAC 58.670 50.000 0.00 0.00 0.00 3.32
3901 7774 2.303022 GGAACCTCCAGATCAGACACAA 59.697 50.000 0.00 0.00 36.28 3.33
3902 7775 1.902508 GGAACCTCCAGATCAGACACA 59.097 52.381 0.00 0.00 36.28 3.72
3903 7776 2.682155 GGAACCTCCAGATCAGACAC 57.318 55.000 0.00 0.00 36.28 3.67
3918 7791 1.301293 CAGCAGGAGGAAGGGGAAC 59.699 63.158 0.00 0.00 0.00 3.62
3919 7792 2.606587 GCAGCAGGAGGAAGGGGAA 61.607 63.158 0.00 0.00 0.00 3.97
3920 7793 3.011517 GCAGCAGGAGGAAGGGGA 61.012 66.667 0.00 0.00 0.00 4.81
3921 7794 4.120755 GGCAGCAGGAGGAAGGGG 62.121 72.222 0.00 0.00 0.00 4.79
3922 7795 3.013932 AGGCAGCAGGAGGAAGGG 61.014 66.667 0.00 0.00 0.00 3.95
3923 7796 1.970352 GAGAGGCAGCAGGAGGAAGG 61.970 65.000 0.00 0.00 0.00 3.46
3924 7797 0.977108 AGAGAGGCAGCAGGAGGAAG 60.977 60.000 0.00 0.00 0.00 3.46
3925 7798 0.975040 GAGAGAGGCAGCAGGAGGAA 60.975 60.000 0.00 0.00 0.00 3.36
3926 7799 1.381056 GAGAGAGGCAGCAGGAGGA 60.381 63.158 0.00 0.00 0.00 3.71
3927 7800 2.784356 CGAGAGAGGCAGCAGGAGG 61.784 68.421 0.00 0.00 0.00 4.30
3928 7801 2.003658 GACGAGAGAGGCAGCAGGAG 62.004 65.000 0.00 0.00 0.00 3.69
3929 7802 2.036414 ACGAGAGAGGCAGCAGGA 59.964 61.111 0.00 0.00 0.00 3.86
3930 7803 2.493973 GACGAGAGAGGCAGCAGG 59.506 66.667 0.00 0.00 0.00 4.85
3931 7804 2.101965 CGACGAGAGAGGCAGCAG 59.898 66.667 0.00 0.00 0.00 4.24
3932 7805 2.673341 ACGACGAGAGAGGCAGCA 60.673 61.111 0.00 0.00 0.00 4.41
3933 7806 2.101380 GACGACGAGAGAGGCAGC 59.899 66.667 0.00 0.00 0.00 5.25
3934 7807 2.766400 GGGACGACGAGAGAGGCAG 61.766 68.421 0.00 0.00 0.00 4.85
3935 7808 2.750637 GGGACGACGAGAGAGGCA 60.751 66.667 0.00 0.00 0.00 4.75
3948 7821 4.337060 GCCGCAAACAACCGGGAC 62.337 66.667 6.32 0.00 44.49 4.46
3949 7822 4.572571 AGCCGCAAACAACCGGGA 62.573 61.111 6.32 0.00 44.49 5.14
3950 7823 4.341502 CAGCCGCAAACAACCGGG 62.342 66.667 6.32 0.00 44.49 5.73
3951 7824 4.999939 GCAGCCGCAAACAACCGG 63.000 66.667 0.00 0.00 46.94 5.28
3964 7837 3.984193 AATCACCGGAGCCTGCAGC 62.984 63.158 9.46 3.91 44.25 5.25
3965 7838 2.110967 CAATCACCGGAGCCTGCAG 61.111 63.158 9.46 6.78 0.00 4.41
3966 7839 2.046023 CAATCACCGGAGCCTGCA 60.046 61.111 9.46 0.00 0.00 4.41
3967 7840 2.045926 ACAATCACCGGAGCCTGC 60.046 61.111 9.46 0.00 0.00 4.85
3968 7841 0.107508 ATCACAATCACCGGAGCCTG 60.108 55.000 9.46 3.20 0.00 4.85
3969 7842 0.179000 GATCACAATCACCGGAGCCT 59.821 55.000 9.46 0.00 31.76 4.58
3970 7843 0.815615 GGATCACAATCACCGGAGCC 60.816 60.000 9.46 0.00 33.21 4.70
3971 7844 0.815615 GGGATCACAATCACCGGAGC 60.816 60.000 9.46 0.00 33.21 4.70
3972 7845 0.833287 AGGGATCACAATCACCGGAG 59.167 55.000 9.46 0.00 35.78 4.63
3973 7846 0.541392 CAGGGATCACAATCACCGGA 59.459 55.000 9.46 0.00 35.78 5.14
3974 7847 0.464373 CCAGGGATCACAATCACCGG 60.464 60.000 0.00 0.00 35.78 5.28
3975 7848 0.253044 ACCAGGGATCACAATCACCG 59.747 55.000 0.00 0.00 35.78 4.94
3976 7849 1.683011 CCACCAGGGATCACAATCACC 60.683 57.143 0.00 0.00 35.78 4.02
3977 7850 1.004745 ACCACCAGGGATCACAATCAC 59.995 52.381 0.00 0.00 41.15 3.06
3978 7851 1.004628 CACCACCAGGGATCACAATCA 59.995 52.381 0.00 0.00 41.15 2.57
3979 7852 1.004745 ACACCACCAGGGATCACAATC 59.995 52.381 0.00 0.00 41.15 2.67
3980 7853 1.075601 ACACCACCAGGGATCACAAT 58.924 50.000 0.00 0.00 41.15 2.71
3981 7854 1.349688 GTACACCACCAGGGATCACAA 59.650 52.381 0.00 0.00 41.15 3.33
3982 7855 0.981183 GTACACCACCAGGGATCACA 59.019 55.000 0.00 0.00 41.15 3.58
3983 7856 1.276622 AGTACACCACCAGGGATCAC 58.723 55.000 0.00 0.00 41.15 3.06
3984 7857 2.038863 AAGTACACCACCAGGGATCA 57.961 50.000 0.00 0.00 41.15 2.92
3985 7858 2.618045 CCAAAGTACACCACCAGGGATC 60.618 54.545 0.00 0.00 41.15 3.36
3986 7859 1.354368 CCAAAGTACACCACCAGGGAT 59.646 52.381 0.00 0.00 41.15 3.85
3987 7860 0.768622 CCAAAGTACACCACCAGGGA 59.231 55.000 0.00 0.00 41.15 4.20
3988 7861 0.251165 CCCAAAGTACACCACCAGGG 60.251 60.000 0.00 0.00 44.81 4.45
3989 7862 0.476771 ACCCAAAGTACACCACCAGG 59.523 55.000 0.00 0.00 42.21 4.45
3990 7863 1.420138 AGACCCAAAGTACACCACCAG 59.580 52.381 0.00 0.00 0.00 4.00
3991 7864 1.142060 CAGACCCAAAGTACACCACCA 59.858 52.381 0.00 0.00 0.00 4.17
3992 7865 1.544759 CCAGACCCAAAGTACACCACC 60.545 57.143 0.00 0.00 0.00 4.61
3993 7866 1.544759 CCCAGACCCAAAGTACACCAC 60.545 57.143 0.00 0.00 0.00 4.16
3994 7867 0.768622 CCCAGACCCAAAGTACACCA 59.231 55.000 0.00 0.00 0.00 4.17
3995 7868 0.037734 CCCCAGACCCAAAGTACACC 59.962 60.000 0.00 0.00 0.00 4.16
3996 7869 0.037734 CCCCCAGACCCAAAGTACAC 59.962 60.000 0.00 0.00 0.00 2.90
3997 7870 0.104356 TCCCCCAGACCCAAAGTACA 60.104 55.000 0.00 0.00 0.00 2.90
3998 7871 0.618981 CTCCCCCAGACCCAAAGTAC 59.381 60.000 0.00 0.00 0.00 2.73
3999 7872 0.494551 TCTCCCCCAGACCCAAAGTA 59.505 55.000 0.00 0.00 0.00 2.24
4000 7873 1.134438 GTCTCCCCCAGACCCAAAGT 61.134 60.000 0.00 0.00 45.47 2.66
4001 7874 1.685820 GTCTCCCCCAGACCCAAAG 59.314 63.158 0.00 0.00 45.47 2.77
4002 7875 3.916184 GTCTCCCCCAGACCCAAA 58.084 61.111 0.00 0.00 45.47 3.28
4008 7881 2.610859 GCCAAGGTCTCCCCCAGA 60.611 66.667 0.00 0.00 0.00 3.86
4009 7882 3.732849 GGCCAAGGTCTCCCCCAG 61.733 72.222 0.00 0.00 0.00 4.45
4013 7886 3.205851 AAACCGGCCAAGGTCTCCC 62.206 63.158 0.00 0.00 45.21 4.30
4014 7887 1.971695 CAAACCGGCCAAGGTCTCC 60.972 63.158 0.00 0.00 45.21 3.71
4015 7888 1.228154 ACAAACCGGCCAAGGTCTC 60.228 57.895 0.00 0.00 45.21 3.36
4016 7889 1.228154 GACAAACCGGCCAAGGTCT 60.228 57.895 0.00 0.00 45.21 3.85
4017 7890 2.265904 GGACAAACCGGCCAAGGTC 61.266 63.158 0.00 2.27 45.21 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.