Multiple sequence alignment - TraesCS5D01G374200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G374200 chr5D 100.000 6946 0 0 1 6946 447248212 447241267 0.000000e+00 12827.0
1 TraesCS5D01G374200 chr5D 94.737 114 4 2 4110 4223 447243998 447243887 7.160000e-40 176.0
2 TraesCS5D01G374200 chr5D 94.737 114 4 2 4215 4326 447244103 447243990 7.160000e-40 176.0
3 TraesCS5D01G374200 chr5B 89.062 3538 216 69 770 4215 545398406 545401864 0.000000e+00 4231.0
4 TraesCS5D01G374200 chr5B 91.311 2716 136 34 4215 6881 545401759 545404423 0.000000e+00 3616.0
5 TraesCS5D01G374200 chr5B 74.912 570 97 28 3492 4026 640432670 640433228 1.170000e-52 219.0
6 TraesCS5D01G374200 chr5B 76.136 352 66 16 3493 3838 470407312 470407651 1.200000e-37 169.0
7 TraesCS5D01G374200 chr5B 91.071 56 4 1 4901 4956 708312611 708312665 2.690000e-09 75.0
8 TraesCS5D01G374200 chr5A 90.629 3052 146 66 508 3495 565387103 565390078 0.000000e+00 3923.0
9 TraesCS5D01G374200 chr5A 91.309 1910 91 22 4997 6872 565391681 565393549 0.000000e+00 2538.0
10 TraesCS5D01G374200 chr5A 91.777 754 43 10 4216 4958 565390797 565391542 0.000000e+00 1031.0
11 TraesCS5D01G374200 chr5A 90.535 486 30 7 1 475 565386619 565387099 4.570000e-176 628.0
12 TraesCS5D01G374200 chr5A 92.188 384 22 4 3493 3873 565390107 565390485 2.850000e-148 536.0
13 TraesCS5D01G374200 chr5A 85.630 341 25 9 3897 4217 565390567 565390903 3.100000e-88 337.0
14 TraesCS5D01G374200 chr3D 79.211 380 60 15 3492 3862 85220204 85220573 5.380000e-61 246.0
15 TraesCS5D01G374200 chr3D 75.524 572 94 31 3489 4026 195644762 195645321 9.000000e-59 239.0
16 TraesCS5D01G374200 chr3D 85.496 131 13 5 3899 4026 511885792 511885665 1.570000e-26 132.0
17 TraesCS5D01G374200 chr3D 91.071 56 4 1 4903 4958 39928172 39928118 2.690000e-09 75.0
18 TraesCS5D01G374200 chr4B 79.396 364 47 18 3492 3837 256172639 256172992 1.510000e-56 231.0
19 TraesCS5D01G374200 chr7D 74.818 548 99 27 3493 4015 66813681 66814214 1.960000e-50 211.0
20 TraesCS5D01G374200 chr7D 77.198 364 58 15 3492 3838 133399280 133398925 9.200000e-44 189.0
21 TraesCS5D01G374200 chr7D 76.519 362 53 25 3495 3837 187147478 187147130 1.200000e-37 169.0
22 TraesCS5D01G374200 chr7D 84.028 144 17 4 3493 3635 59166249 59166387 4.370000e-27 134.0
23 TraesCS5D01G374200 chr6D 74.650 572 97 28 3493 4026 3419003 3419564 7.060000e-50 209.0
24 TraesCS5D01G374200 chr2D 77.249 378 71 12 3493 3865 359379317 359379684 2.540000e-49 207.0
25 TraesCS5D01G374200 chr3A 81.356 236 38 5 3637 3868 20730530 20730297 3.310000e-43 187.0
26 TraesCS5D01G374200 chr2A 76.923 286 54 11 3493 3775 483627431 483627155 1.210000e-32 152.0
27 TraesCS5D01G374200 chr2A 87.097 62 6 2 4899 4960 236837302 236837361 1.250000e-07 69.4
28 TraesCS5D01G374200 chr7B 91.228 57 3 2 4901 4956 297400461 297400516 7.470000e-10 76.8
29 TraesCS5D01G374200 chr7A 91.228 57 3 2 4901 4956 391906768 391906713 7.470000e-10 76.8
30 TraesCS5D01G374200 chr7A 89.831 59 4 2 4898 4956 652541716 652541772 2.690000e-09 75.0
31 TraesCS5D01G374200 chr2B 91.228 57 4 1 4900 4956 184924482 184924537 7.470000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G374200 chr5D 447241267 447248212 6945 True 12827.000000 12827 100.000000 1 6946 1 chr5D.!!$R1 6945
1 TraesCS5D01G374200 chr5B 545398406 545404423 6017 False 3923.500000 4231 90.186500 770 6881 2 chr5B.!!$F4 6111
2 TraesCS5D01G374200 chr5B 640432670 640433228 558 False 219.000000 219 74.912000 3492 4026 1 chr5B.!!$F2 534
3 TraesCS5D01G374200 chr5A 565386619 565393549 6930 False 1498.833333 3923 90.344667 1 6872 6 chr5A.!!$F1 6871
4 TraesCS5D01G374200 chr3D 195644762 195645321 559 False 239.000000 239 75.524000 3489 4026 1 chr3D.!!$F2 537
5 TraesCS5D01G374200 chr7D 66813681 66814214 533 False 211.000000 211 74.818000 3493 4015 1 chr7D.!!$F2 522
6 TraesCS5D01G374200 chr6D 3419003 3419564 561 False 209.000000 209 74.650000 3493 4026 1 chr6D.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 515 0.093705 GTGTGAACTCTCGCAATCGC 59.906 55.0 0.00 0.0 43.54 4.58 F
1321 1353 0.037882 TCTGCCACAAGAAGCTCTCG 60.038 55.0 0.00 0.0 0.00 4.04 F
1405 1451 0.185901 CCTCTCTCCTCCTCCTCCTG 59.814 65.0 0.00 0.0 0.00 3.86 F
2495 2581 0.251742 CAAGACCATCCCAAAGGCCA 60.252 55.0 5.01 0.0 0.00 5.36 F
2606 2692 0.878416 TGCCGTGTAATTTCCTGCAC 59.122 50.0 0.00 0.0 0.00 4.57 F
3882 4026 0.037975 CACTGTCATTTTGCCAGGCC 60.038 55.0 9.64 0.0 0.00 5.19 F
3886 4030 0.244721 GTCATTTTGCCAGGCCTCAC 59.755 55.0 9.64 0.0 0.00 3.51 F
5608 5953 0.804989 GACATAAACAAGCTGCGCCT 59.195 50.0 4.18 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2399 2485 0.700564 CTATGGGATGGGATGTGGGG 59.299 60.000 0.0 0.0 0.00 4.96 R
3320 3413 0.248289 ATTTGCTGCTCCATTGCCAC 59.752 50.000 0.0 0.0 0.00 5.01 R
3342 3435 4.398247 GTGAAATTGACGAGCTGAATGAC 58.602 43.478 0.0 0.0 0.00 3.06 R
3516 3640 0.252197 GGTAGCACCCAATTCCGTCT 59.748 55.000 0.0 0.0 30.04 4.18 R
4483 4708 1.604593 GTGCAGGTGGCTGTCCAAT 60.605 57.895 0.0 0.0 45.53 3.16 R
5808 6156 2.561419 TCTAACAGGTTTCCACTCTCGG 59.439 50.000 0.0 0.0 0.00 4.63 R
5903 6253 3.181516 CCGCTGAAAAGACACTGCTAATC 60.182 47.826 0.0 0.0 0.00 1.75 R
6908 7316 0.028902 GAACCGGCATACATTTCGGC 59.971 55.000 0.0 0.0 45.65 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.999205 ACCACATTCTTGATGCCAATAAA 57.001 34.783 0.00 0.00 39.47 1.40
47 48 4.335315 TGATGCCAATAAAGGAGTAAAGCG 59.665 41.667 0.00 0.00 0.00 4.68
89 90 7.266905 TGGGAGCTTTTCCTACTTAATAACT 57.733 36.000 0.00 0.00 45.98 2.24
109 110 4.810790 ACTTGATACCACTCTTTCTCACG 58.189 43.478 0.00 0.00 0.00 4.35
112 113 3.195610 TGATACCACTCTTTCTCACGCAT 59.804 43.478 0.00 0.00 0.00 4.73
152 153 3.818773 ACAAATCTCACGATTTTCCGGTT 59.181 39.130 0.00 0.00 45.18 4.44
165 166 7.064253 ACGATTTTCCGGTTTACTTCTATCTTG 59.936 37.037 0.00 0.00 0.00 3.02
169 170 8.857694 TTTCCGGTTTACTTCTATCTTGAAAT 57.142 30.769 0.00 0.00 0.00 2.17
193 194 7.806409 TGAAGTCTCACAAATTCTTCAATGA 57.194 32.000 0.00 0.00 40.55 2.57
213 214 7.227314 TCAATGAACCATACATGTAGCTTGATC 59.773 37.037 11.91 7.49 0.00 2.92
248 249 6.387127 TGGTATCCCCTATCAGTTAGCTTAA 58.613 40.000 0.00 0.00 0.00 1.85
249 250 6.269307 TGGTATCCCCTATCAGTTAGCTTAAC 59.731 42.308 0.00 0.00 38.94 2.01
251 252 7.673082 GGTATCCCCTATCAGTTAGCTTAACTA 59.327 40.741 0.00 0.00 46.66 2.24
256 257 8.305317 CCCCTATCAGTTAGCTTAACTATGTAC 58.695 40.741 0.00 0.00 46.66 2.90
268 269 0.104304 CTATGTACCCGTGCCCAGAC 59.896 60.000 0.00 0.00 0.00 3.51
273 274 4.704833 CCCGTGCCCAGACCACAG 62.705 72.222 0.00 0.00 32.85 3.66
278 279 0.109723 GTGCCCAGACCACAGGTTTA 59.890 55.000 0.00 0.00 35.25 2.01
281 282 2.012051 GCCCAGACCACAGGTTTATCG 61.012 57.143 0.00 0.00 35.25 2.92
309 310 6.550163 ACCACTATCGTAGGGTTCATATACT 58.450 40.000 0.00 0.00 0.00 2.12
326 327 8.034313 TCATATACTCCTCCATTAACAAAGCT 57.966 34.615 0.00 0.00 0.00 3.74
327 328 8.494433 TCATATACTCCTCCATTAACAAAGCTT 58.506 33.333 0.00 0.00 0.00 3.74
328 329 8.778358 CATATACTCCTCCATTAACAAAGCTTC 58.222 37.037 0.00 0.00 0.00 3.86
333 334 6.009589 TCCTCCATTAACAAAGCTTCATTCA 58.990 36.000 0.00 0.00 0.00 2.57
345 346 6.899393 AAGCTTCATTCATAAAGAACCACA 57.101 33.333 0.00 0.00 39.49 4.17
375 376 4.402155 TCACCATTGCCTTATTCCAATCAC 59.598 41.667 0.00 0.00 29.71 3.06
411 412 4.019860 ACTGCACTATGAAGAGGTTGTCAT 60.020 41.667 0.00 0.00 38.10 3.06
412 413 4.256110 TGCACTATGAAGAGGTTGTCATG 58.744 43.478 0.00 0.00 36.00 3.07
415 416 5.064452 GCACTATGAAGAGGTTGTCATGAAG 59.936 44.000 0.00 0.00 36.00 3.02
416 417 6.401394 CACTATGAAGAGGTTGTCATGAAGA 58.599 40.000 0.00 0.00 36.00 2.87
435 447 3.944087 AGACACATCTTTAGCTGGGTTC 58.056 45.455 0.00 0.00 26.52 3.62
441 453 3.634397 TCTTTAGCTGGGTTCCATGAG 57.366 47.619 0.00 0.00 30.82 2.90
475 487 2.131183 CAATCAGAGCGCTAAGGCTAC 58.869 52.381 11.50 0.00 44.93 3.58
476 488 0.676736 ATCAGAGCGCTAAGGCTACC 59.323 55.000 11.50 0.00 44.93 3.18
477 489 0.395862 TCAGAGCGCTAAGGCTACCT 60.396 55.000 11.50 0.00 44.93 3.08
479 491 0.106419 AGAGCGCTAAGGCTACCTCT 60.106 55.000 11.50 0.00 44.93 3.69
480 492 0.312729 GAGCGCTAAGGCTACCTCTC 59.687 60.000 11.50 0.00 44.93 3.20
481 493 1.008309 GCGCTAAGGCTACCTCTCG 60.008 63.158 0.00 0.00 36.09 4.04
482 494 1.726533 GCGCTAAGGCTACCTCTCGT 61.727 60.000 0.00 0.00 36.09 4.18
483 495 0.308376 CGCTAAGGCTACCTCTCGTC 59.692 60.000 0.00 0.00 36.09 4.20
484 496 0.308376 GCTAAGGCTACCTCTCGTCG 59.692 60.000 0.00 0.00 30.89 5.12
485 497 1.666054 CTAAGGCTACCTCTCGTCGT 58.334 55.000 0.00 0.00 30.89 4.34
486 498 1.331138 CTAAGGCTACCTCTCGTCGTG 59.669 57.143 0.00 0.00 30.89 4.35
487 499 0.608582 AAGGCTACCTCTCGTCGTGT 60.609 55.000 0.00 0.00 30.89 4.49
488 500 1.136984 GGCTACCTCTCGTCGTGTG 59.863 63.158 0.00 0.00 0.00 3.82
489 501 1.303799 GGCTACCTCTCGTCGTGTGA 61.304 60.000 0.00 0.00 0.00 3.58
490 502 0.520404 GCTACCTCTCGTCGTGTGAA 59.480 55.000 0.00 0.00 0.00 3.18
491 503 1.728502 GCTACCTCTCGTCGTGTGAAC 60.729 57.143 0.00 0.00 0.00 3.18
492 504 1.805345 CTACCTCTCGTCGTGTGAACT 59.195 52.381 0.00 0.00 0.00 3.01
493 505 0.592148 ACCTCTCGTCGTGTGAACTC 59.408 55.000 0.00 0.00 0.00 3.01
494 506 0.875728 CCTCTCGTCGTGTGAACTCT 59.124 55.000 0.00 0.00 0.00 3.24
495 507 1.135916 CCTCTCGTCGTGTGAACTCTC 60.136 57.143 0.00 0.00 0.00 3.20
496 508 0.511653 TCTCGTCGTGTGAACTCTCG 59.488 55.000 0.00 0.00 0.00 4.04
497 509 1.060726 CTCGTCGTGTGAACTCTCGC 61.061 60.000 0.00 0.00 0.00 5.03
498 510 1.370051 CGTCGTGTGAACTCTCGCA 60.370 57.895 0.00 0.00 39.78 5.10
499 511 0.933047 CGTCGTGTGAACTCTCGCAA 60.933 55.000 0.00 0.00 43.54 4.85
500 512 1.419374 GTCGTGTGAACTCTCGCAAT 58.581 50.000 0.00 0.00 43.54 3.56
501 513 1.387084 GTCGTGTGAACTCTCGCAATC 59.613 52.381 0.00 0.00 43.54 2.67
502 514 0.363512 CGTGTGAACTCTCGCAATCG 59.636 55.000 0.00 0.00 43.54 3.34
503 515 0.093705 GTGTGAACTCTCGCAATCGC 59.906 55.000 0.00 0.00 43.54 4.58
504 516 1.014044 TGTGAACTCTCGCAATCGCC 61.014 55.000 0.00 0.00 39.13 5.54
505 517 1.014044 GTGAACTCTCGCAATCGCCA 61.014 55.000 0.00 0.00 35.26 5.69
506 518 0.737367 TGAACTCTCGCAATCGCCAG 60.737 55.000 0.00 0.00 35.26 4.85
507 519 2.029904 GAACTCTCGCAATCGCCAGC 62.030 60.000 0.00 0.00 35.26 4.85
508 520 3.267860 CTCTCGCAATCGCCAGCC 61.268 66.667 0.00 0.00 35.26 4.85
509 521 4.081185 TCTCGCAATCGCCAGCCA 62.081 61.111 0.00 0.00 35.26 4.75
538 550 2.682594 TCTTGGGTGGATCATCGATCT 58.317 47.619 0.00 0.00 38.91 2.75
539 551 2.630098 TCTTGGGTGGATCATCGATCTC 59.370 50.000 0.00 0.00 38.91 2.75
545 557 4.202305 GGGTGGATCATCGATCTCTTCTTT 60.202 45.833 0.00 0.00 38.91 2.52
572 584 4.021102 AGACGAATTCATCCACACCTTT 57.979 40.909 6.22 0.00 0.00 3.11
576 588 4.002982 CGAATTCATCCACACCTTTCTCA 58.997 43.478 6.22 0.00 0.00 3.27
579 591 4.639078 TTCATCCACACCTTTCTCATGA 57.361 40.909 0.00 0.00 0.00 3.07
581 593 4.582869 TCATCCACACCTTTCTCATGAAG 58.417 43.478 0.00 0.00 33.28 3.02
583 595 4.008074 TCCACACCTTTCTCATGAAGAC 57.992 45.455 0.00 0.00 32.27 3.01
588 600 5.007626 CACACCTTTCTCATGAAGACGAAAA 59.992 40.000 8.63 0.00 32.27 2.29
590 602 4.211374 ACCTTTCTCATGAAGACGAAAACG 59.789 41.667 8.63 5.40 32.27 3.60
591 603 4.447724 CCTTTCTCATGAAGACGAAAACGA 59.552 41.667 8.63 0.00 32.27 3.85
614 626 2.171341 AGAAGTTGGGCTCGTTTCTC 57.829 50.000 0.00 0.00 0.00 2.87
618 630 3.820425 TGGGCTCGTTTCTCCCAT 58.180 55.556 0.00 0.00 44.62 4.00
623 635 1.120530 GCTCGTTTCTCCCATCCCTA 58.879 55.000 0.00 0.00 0.00 3.53
629 641 1.819753 TTCTCCCATCCCTACCATGG 58.180 55.000 11.19 11.19 40.67 3.66
638 650 1.200519 CCCTACCATGGTTCCTTCGA 58.799 55.000 25.38 1.17 0.00 3.71
643 655 1.628340 ACCATGGTTCCTTCGACATGA 59.372 47.619 13.00 0.00 42.39 3.07
696 709 1.076632 AACCCAAAACGCCTCACCA 60.077 52.632 0.00 0.00 0.00 4.17
697 710 1.106944 AACCCAAAACGCCTCACCAG 61.107 55.000 0.00 0.00 0.00 4.00
706 719 4.351054 CCTCACCAGCCACCCACC 62.351 72.222 0.00 0.00 0.00 4.61
707 720 3.569210 CTCACCAGCCACCCACCA 61.569 66.667 0.00 0.00 0.00 4.17
708 721 3.557903 CTCACCAGCCACCCACCAG 62.558 68.421 0.00 0.00 0.00 4.00
715 728 4.974721 CCACCCACCAGCCACCAC 62.975 72.222 0.00 0.00 0.00 4.16
716 729 4.974721 CACCCACCAGCCACCACC 62.975 72.222 0.00 0.00 0.00 4.61
847 860 4.634133 GTCACGGGCACGACACGA 62.634 66.667 19.19 2.32 44.60 4.35
848 861 4.337060 TCACGGGCACGACACGAG 62.337 66.667 19.19 4.10 44.60 4.18
914 931 1.658686 AAGGGAAAACACGCGCAACA 61.659 50.000 5.73 0.00 0.00 3.33
921 938 4.980903 CACGCGCAACACCAAGGC 62.981 66.667 5.73 0.00 0.00 4.35
1041 1061 2.435938 GCCCAAATCGCACCGAGA 60.436 61.111 0.00 0.00 39.91 4.04
1044 1064 1.644786 CCCAAATCGCACCGAGAACC 61.645 60.000 0.00 0.00 39.91 3.62
1106 1137 1.082679 GCCGAACGAAACCCTAGCTC 61.083 60.000 0.00 0.00 0.00 4.09
1107 1138 0.801067 CCGAACGAAACCCTAGCTCG 60.801 60.000 0.00 0.00 38.53 5.03
1108 1139 0.801067 CGAACGAAACCCTAGCTCGG 60.801 60.000 0.00 0.00 36.90 4.63
1109 1140 0.245813 GAACGAAACCCTAGCTCGGT 59.754 55.000 3.23 1.25 36.90 4.69
1110 1141 0.245813 AACGAAACCCTAGCTCGGTC 59.754 55.000 5.89 0.00 36.90 4.79
1111 1142 1.226603 CGAAACCCTAGCTCGGTCG 60.227 63.158 5.89 3.88 31.48 4.79
1112 1143 1.518792 GAAACCCTAGCTCGGTCGC 60.519 63.158 5.89 0.00 31.48 5.19
1113 1144 3.352338 AAACCCTAGCTCGGTCGCG 62.352 63.158 0.00 0.00 31.48 5.87
1161 1192 4.144727 GGAGAGGGCGGAGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
1162 1193 2.520741 GAGAGGGCGGAGAGGGAG 60.521 72.222 0.00 0.00 0.00 4.30
1163 1194 3.024356 AGAGGGCGGAGAGGGAGA 61.024 66.667 0.00 0.00 0.00 3.71
1321 1353 0.037882 TCTGCCACAAGAAGCTCTCG 60.038 55.000 0.00 0.00 0.00 4.04
1383 1415 2.279918 GTCCGTCACCAAGTGCGT 60.280 61.111 9.49 0.00 33.70 5.24
1405 1451 0.185901 CCTCTCTCCTCCTCCTCCTG 59.814 65.000 0.00 0.00 0.00 3.86
1485 1531 1.065764 CGCTCGATTGGATCCGTGA 59.934 57.895 7.39 1.10 0.00 4.35
1486 1532 0.319040 CGCTCGATTGGATCCGTGAT 60.319 55.000 7.39 0.69 0.00 3.06
1487 1533 1.869754 CGCTCGATTGGATCCGTGATT 60.870 52.381 7.39 0.00 0.00 2.57
1489 1535 1.528586 CTCGATTGGATCCGTGATTGC 59.471 52.381 7.39 0.00 0.00 3.56
1491 1537 1.299541 GATTGGATCCGTGATTGCGT 58.700 50.000 7.39 0.00 0.00 5.24
1499 1546 2.798501 CGTGATTGCGTGCGGTAGG 61.799 63.158 0.00 0.00 0.00 3.18
1536 1583 3.921677 TCGGTGGTGTCTAATCTGTTTC 58.078 45.455 0.00 0.00 0.00 2.78
1538 1585 4.039973 TCGGTGGTGTCTAATCTGTTTCTT 59.960 41.667 0.00 0.00 0.00 2.52
1540 1587 5.552178 GGTGGTGTCTAATCTGTTTCTTCT 58.448 41.667 0.00 0.00 0.00 2.85
1682 1729 4.396166 GCAGCTTGCTTATTTTCTCCACTA 59.604 41.667 0.00 0.00 40.96 2.74
1685 1732 6.317140 CAGCTTGCTTATTTTCTCCACTATGA 59.683 38.462 0.00 0.00 0.00 2.15
1686 1733 7.013083 CAGCTTGCTTATTTTCTCCACTATGAT 59.987 37.037 0.00 0.00 0.00 2.45
1700 1747 9.605275 TCTCCACTATGATTTTATGTTTCTCTG 57.395 33.333 0.00 0.00 0.00 3.35
1791 1869 1.815421 GACGATGGCCAATCACGCT 60.815 57.895 10.96 4.85 34.68 5.07
1818 1896 9.573133 GCAAATTATTGGATTCCTTAATATCGG 57.427 33.333 3.95 1.48 37.02 4.18
1844 1922 1.689959 GTCGAACGTACGTGGTTCAT 58.310 50.000 23.57 4.40 43.00 2.57
1874 1952 5.048504 AGCATAATTATCCATCAGCAAACGG 60.049 40.000 0.00 0.00 0.00 4.44
1924 2003 4.500375 GGGCATGTTATTTCTCTCCAATGC 60.500 45.833 0.00 0.00 0.00 3.56
2100 2180 5.136828 TCAACCTTTACATTTGAGAAGGCA 58.863 37.500 13.04 0.00 41.84 4.75
2157 2237 6.154192 TGGTGTTTGGTGCATGTATAAATGAT 59.846 34.615 7.11 0.00 0.00 2.45
2178 2258 6.170506 TGATAGTTTTGTTAGCTTGGACGAT 58.829 36.000 0.00 0.00 0.00 3.73
2440 2526 1.518056 CCAGACGCAGCCACACAAAT 61.518 55.000 0.00 0.00 0.00 2.32
2495 2581 0.251742 CAAGACCATCCCAAAGGCCA 60.252 55.000 5.01 0.00 0.00 5.36
2519 2605 1.302033 CCAGCCTCAGCGAAACACT 60.302 57.895 0.00 0.00 46.67 3.55
2554 2640 1.741770 GGCCTGGTTAGTCACGCTG 60.742 63.158 0.00 0.00 0.00 5.18
2606 2692 0.878416 TGCCGTGTAATTTCCTGCAC 59.122 50.000 0.00 0.00 0.00 4.57
2659 2750 5.245531 TCCTTAACTGCTTACCATGTTCTG 58.754 41.667 0.00 0.00 0.00 3.02
2941 3034 4.262463 CGCCCTATGTATGCTCTCCTTTTA 60.262 45.833 0.00 0.00 0.00 1.52
2942 3035 5.569630 CGCCCTATGTATGCTCTCCTTTTAT 60.570 44.000 0.00 0.00 0.00 1.40
2943 3036 6.241645 GCCCTATGTATGCTCTCCTTTTATT 58.758 40.000 0.00 0.00 0.00 1.40
2944 3037 6.717084 GCCCTATGTATGCTCTCCTTTTATTT 59.283 38.462 0.00 0.00 0.00 1.40
2990 3083 6.291637 CCAGTCTACTTAAAATATGCGTGTCG 60.292 42.308 0.00 0.00 0.00 4.35
3021 3114 3.119173 TGTTGGCACTCTTTTTGGAACAG 60.119 43.478 0.00 0.00 42.39 3.16
3031 3124 7.592903 CACTCTTTTTGGAACAGCTTCTAATTC 59.407 37.037 0.00 0.00 42.39 2.17
3150 3243 2.497273 GGTTTCAGTTCCCCCAATGATG 59.503 50.000 0.00 0.00 0.00 3.07
3180 3273 1.200020 GCACCACAGCAACCACTATTC 59.800 52.381 0.00 0.00 0.00 1.75
3253 3346 4.302455 ACTTCAGACATCATACGCTATGC 58.698 43.478 0.00 0.00 36.14 3.14
3309 3402 0.969149 CTTCCCAGCCTTTGTTTCCC 59.031 55.000 0.00 0.00 0.00 3.97
3320 3413 3.243267 CCTTTGTTTCCCGTTAACACCAG 60.243 47.826 6.39 0.00 35.39 4.00
3342 3435 1.274596 GCAATGGAGCAGCAAATTCG 58.725 50.000 0.00 0.00 0.00 3.34
3516 3640 2.552315 GGATGAAAACAGAGCGGAAACA 59.448 45.455 0.00 0.00 0.00 2.83
3576 3700 4.998671 TTGTGTGGAAGCAGAAATGAAA 57.001 36.364 0.00 0.00 0.00 2.69
3577 3701 4.998671 TGTGTGGAAGCAGAAATGAAAA 57.001 36.364 0.00 0.00 0.00 2.29
3578 3702 5.336150 TGTGTGGAAGCAGAAATGAAAAA 57.664 34.783 0.00 0.00 0.00 1.94
3591 3715 7.441017 CAGAAATGAAAAATACAGAAACCCCA 58.559 34.615 0.00 0.00 0.00 4.96
3642 3778 0.756294 ACGAACATGGAGTGGACACA 59.244 50.000 5.14 0.00 0.00 3.72
3680 3816 3.007473 TCACCGGAACTTGAAAAACCT 57.993 42.857 9.46 0.00 0.00 3.50
3691 3827 6.544928 ACTTGAAAAACCTCTTGAACCATT 57.455 33.333 0.00 0.00 0.00 3.16
3873 4017 3.244181 GGGCCATTTTGTCACTGTCATTT 60.244 43.478 4.39 0.00 0.00 2.32
3876 4020 4.318974 GCCATTTTGTCACTGTCATTTTGC 60.319 41.667 0.00 0.00 0.00 3.68
3878 4022 4.462508 TTTTGTCACTGTCATTTTGCCA 57.537 36.364 0.00 0.00 0.00 4.92
3879 4023 3.713858 TTGTCACTGTCATTTTGCCAG 57.286 42.857 0.00 0.00 0.00 4.85
3882 4026 0.037975 CACTGTCATTTTGCCAGGCC 60.038 55.000 9.64 0.00 0.00 5.19
3884 4028 0.529378 CTGTCATTTTGCCAGGCCTC 59.471 55.000 9.64 0.00 0.00 4.70
3886 4030 0.244721 GTCATTTTGCCAGGCCTCAC 59.755 55.000 9.64 0.00 0.00 3.51
3888 4032 0.899720 CATTTTGCCAGGCCTCACAT 59.100 50.000 9.64 0.00 0.00 3.21
3889 4033 0.899720 ATTTTGCCAGGCCTCACATG 59.100 50.000 9.64 0.00 0.00 3.21
3890 4034 1.186917 TTTTGCCAGGCCTCACATGG 61.187 55.000 9.64 1.97 37.15 3.66
3908 4110 5.642063 CACATGGGCCCGTATATAGTAAAAG 59.358 44.000 18.59 1.64 0.00 2.27
3979 4181 4.710324 TCCGTCTAAAACCACTGTTTCAT 58.290 39.130 0.00 0.00 43.80 2.57
3980 4182 4.513692 TCCGTCTAAAACCACTGTTTCATG 59.486 41.667 0.00 0.00 43.80 3.07
4026 4231 7.477144 AAAATTCCATTTCTGTTTCCGTTTC 57.523 32.000 0.00 0.00 0.00 2.78
4027 4232 4.577834 TTCCATTTCTGTTTCCGTTTCC 57.422 40.909 0.00 0.00 0.00 3.13
4028 4233 3.556999 TCCATTTCTGTTTCCGTTTCCA 58.443 40.909 0.00 0.00 0.00 3.53
4029 4234 4.148838 TCCATTTCTGTTTCCGTTTCCAT 58.851 39.130 0.00 0.00 0.00 3.41
4030 4235 4.586841 TCCATTTCTGTTTCCGTTTCCATT 59.413 37.500 0.00 0.00 0.00 3.16
4031 4236 5.069781 TCCATTTCTGTTTCCGTTTCCATTT 59.930 36.000 0.00 0.00 0.00 2.32
4032 4237 5.405269 CCATTTCTGTTTCCGTTTCCATTTC 59.595 40.000 0.00 0.00 0.00 2.17
4033 4238 4.577834 TTCTGTTTCCGTTTCCATTTCC 57.422 40.909 0.00 0.00 0.00 3.13
4034 4239 2.550606 TCTGTTTCCGTTTCCATTTCCG 59.449 45.455 0.00 0.00 0.00 4.30
4037 4242 1.540267 TTCCGTTTCCATTTCCGCAT 58.460 45.000 0.00 0.00 0.00 4.73
4040 4245 2.420722 TCCGTTTCCATTTCCGCATTAC 59.579 45.455 0.00 0.00 0.00 1.89
4087 4312 9.599866 TTCATTTTCATCCCTACATATATAGCG 57.400 33.333 0.00 0.00 0.00 4.26
4098 4323 5.578005 ACATATATAGCGCATCTACCGTT 57.422 39.130 11.47 0.00 0.00 4.44
4247 4472 8.284945 TGAAAGGAAATCAGAGAACAATATGG 57.715 34.615 0.00 0.00 0.00 2.74
4248 4473 8.108999 TGAAAGGAAATCAGAGAACAATATGGA 58.891 33.333 0.00 0.00 0.00 3.41
4249 4474 7.872113 AAGGAAATCAGAGAACAATATGGAC 57.128 36.000 0.00 0.00 0.00 4.02
4250 4475 7.205515 AGGAAATCAGAGAACAATATGGACT 57.794 36.000 0.00 0.00 0.00 3.85
4251 4476 8.324191 AGGAAATCAGAGAACAATATGGACTA 57.676 34.615 0.00 0.00 0.00 2.59
4252 4477 8.772250 AGGAAATCAGAGAACAATATGGACTAA 58.228 33.333 0.00 0.00 0.00 2.24
4253 4478 9.566432 GGAAATCAGAGAACAATATGGACTAAT 57.434 33.333 0.00 0.00 0.00 1.73
4287 4512 9.853177 ATTATAAACACCTGAGAGGAATTTAGG 57.147 33.333 0.00 0.00 37.67 2.69
4288 4513 3.636153 ACACCTGAGAGGAATTTAGGC 57.364 47.619 0.00 0.00 37.67 3.93
4289 4514 2.912956 ACACCTGAGAGGAATTTAGGCA 59.087 45.455 0.00 0.00 37.67 4.75
4290 4515 3.330701 ACACCTGAGAGGAATTTAGGCAA 59.669 43.478 0.00 0.00 37.67 4.52
4291 4516 3.944015 CACCTGAGAGGAATTTAGGCAAG 59.056 47.826 0.00 0.00 37.67 4.01
4292 4517 3.846588 ACCTGAGAGGAATTTAGGCAAGA 59.153 43.478 0.00 0.00 37.67 3.02
4293 4518 4.476479 ACCTGAGAGGAATTTAGGCAAGAT 59.524 41.667 0.00 0.00 37.67 2.40
4294 4519 5.044550 ACCTGAGAGGAATTTAGGCAAGATT 60.045 40.000 0.00 0.00 37.67 2.40
4295 4520 5.890419 CCTGAGAGGAATTTAGGCAAGATTT 59.110 40.000 0.00 0.00 37.67 2.17
4296 4521 6.039159 CCTGAGAGGAATTTAGGCAAGATTTC 59.961 42.308 0.00 0.00 37.67 2.17
4297 4522 6.484288 TGAGAGGAATTTAGGCAAGATTTCA 58.516 36.000 0.00 0.00 0.00 2.69
4298 4523 7.121382 TGAGAGGAATTTAGGCAAGATTTCAT 58.879 34.615 0.00 0.00 0.00 2.57
4299 4524 7.284034 TGAGAGGAATTTAGGCAAGATTTCATC 59.716 37.037 0.00 0.00 0.00 2.92
4300 4525 7.352738 AGAGGAATTTAGGCAAGATTTCATCT 58.647 34.615 0.00 0.00 42.61 2.90
4301 4526 7.284944 AGAGGAATTTAGGCAAGATTTCATCTG 59.715 37.037 4.89 0.00 40.13 2.90
4302 4527 6.894103 AGGAATTTAGGCAAGATTTCATCTGT 59.106 34.615 0.00 0.00 40.13 3.41
4303 4528 7.398332 AGGAATTTAGGCAAGATTTCATCTGTT 59.602 33.333 0.00 0.00 40.13 3.16
4304 4529 8.686334 GGAATTTAGGCAAGATTTCATCTGTTA 58.314 33.333 0.00 0.00 40.13 2.41
4389 4614 6.053005 TCTGAGTTGACGTTTTGTATTTCCT 58.947 36.000 0.00 0.00 0.00 3.36
4398 4623 9.226606 TGACGTTTTGTATTTCCTTCTGATATT 57.773 29.630 0.00 0.00 0.00 1.28
4483 4708 2.602676 GGTACAGGAGGGCCAGCAA 61.603 63.158 6.18 0.00 36.29 3.91
4594 4819 8.929827 TGAAGCAATGTCAATGGTATTTATTG 57.070 30.769 0.00 0.00 36.98 1.90
4808 5034 2.202236 ATCATTGGAGTGCGGCACCT 62.202 55.000 28.14 16.07 34.49 4.00
4896 5124 5.499004 TGTATTCCTTCAGTAGTTGGCTT 57.501 39.130 0.00 0.00 0.00 4.35
4897 5125 5.245531 TGTATTCCTTCAGTAGTTGGCTTG 58.754 41.667 0.00 0.00 0.00 4.01
4898 5126 3.857157 TTCCTTCAGTAGTTGGCTTGT 57.143 42.857 0.00 0.00 0.00 3.16
4912 5140 5.013183 AGTTGGCTTGTTACATACTTCCTCT 59.987 40.000 0.00 0.00 0.00 3.69
4916 5144 5.351740 GGCTTGTTACATACTTCCTCTGTTC 59.648 44.000 0.00 0.00 0.00 3.18
5474 5819 6.065374 TGCTCTGTTATTTGTTCCCAAGTTA 58.935 36.000 0.00 0.00 0.00 2.24
5476 5821 6.548441 TCTGTTATTTGTTCCCAAGTTACG 57.452 37.500 0.00 0.00 0.00 3.18
5507 5852 9.010029 TCAAATCTAATACCACCTTTCTTTGTC 57.990 33.333 0.00 0.00 0.00 3.18
5608 5953 0.804989 GACATAAACAAGCTGCGCCT 59.195 50.000 4.18 0.00 0.00 5.52
5664 6009 2.475466 GCTCACCCGTGCATCCATG 61.475 63.158 0.00 0.00 0.00 3.66
5738 6083 4.705991 ACTTAGTTAGTGACTGGAGCTACC 59.294 45.833 0.00 0.00 39.48 3.18
5744 6089 1.153745 GACTGGAGCTACCGCAGTG 60.154 63.158 0.00 0.00 42.61 3.66
5788 6134 6.615088 ACTTGGAGATTTTGATTCAACATCG 58.385 36.000 16.09 7.48 36.17 3.84
5808 6156 3.798337 TCGTTTGTCCTGTCTTTTCGTAC 59.202 43.478 0.00 0.00 0.00 3.67
5897 6247 4.258702 TCTTCAGCTCTGTAAACCTGAC 57.741 45.455 0.00 0.00 34.36 3.51
5903 6253 3.119316 AGCTCTGTAAACCTGACGATGAG 60.119 47.826 0.00 0.00 0.00 2.90
5922 6272 6.237781 CGATGAGATTAGCAGTGTCTTTTCAG 60.238 42.308 0.00 0.00 0.00 3.02
5924 6274 3.681897 AGATTAGCAGTGTCTTTTCAGCG 59.318 43.478 0.00 0.00 0.00 5.18
5956 6306 5.181056 TGCTGTTGAGTACCATATGTTGTTG 59.819 40.000 1.24 0.00 0.00 3.33
5988 6339 2.125552 CCTTCCGCAGCGTGATCA 60.126 61.111 15.05 0.00 0.00 2.92
6083 6434 2.865551 CTCTCCGGTACTACTCGTCTTC 59.134 54.545 0.00 0.00 0.00 2.87
6116 6467 1.493950 CGCAACGATCTGAGATGCCC 61.494 60.000 0.00 0.00 33.55 5.36
6283 6649 0.182537 CTTGTGTGTGGAGTGGGGAA 59.817 55.000 0.00 0.00 0.00 3.97
6301 6667 3.458189 GGAAGTATGTTGAGTGGATCCG 58.542 50.000 7.39 0.00 0.00 4.18
6309 6675 2.552315 GTTGAGTGGATCCGAAGCAAAA 59.448 45.455 7.39 0.00 0.00 2.44
6324 6690 3.916035 AGCAAAAGAGGAGGAAAAAGGT 58.084 40.909 0.00 0.00 0.00 3.50
6325 6691 4.290093 AGCAAAAGAGGAGGAAAAAGGTT 58.710 39.130 0.00 0.00 0.00 3.50
6334 6715 1.143073 AGGAAAAAGGTTGAGTCGGCT 59.857 47.619 0.00 0.00 0.00 5.52
6337 6718 0.537371 AAAAGGTTGAGTCGGCTGGG 60.537 55.000 0.00 0.00 0.00 4.45
6366 6754 2.511145 GCTTCTCTCTGGGCAGCG 60.511 66.667 0.00 0.00 0.00 5.18
6450 6843 3.068590 ACGAATCCAATCATTTCCATGCC 59.931 43.478 0.00 0.00 0.00 4.40
6451 6844 3.553508 CGAATCCAATCATTTCCATGCCC 60.554 47.826 0.00 0.00 0.00 5.36
6452 6845 2.852714 TCCAATCATTTCCATGCCCT 57.147 45.000 0.00 0.00 0.00 5.19
6453 6846 2.390696 TCCAATCATTTCCATGCCCTG 58.609 47.619 0.00 0.00 0.00 4.45
6454 6847 1.202604 CCAATCATTTCCATGCCCTGC 60.203 52.381 0.00 0.00 0.00 4.85
6580 6980 6.781014 CCTCCTCCTTTAACCTTTAACCTTTT 59.219 38.462 0.00 0.00 0.00 2.27
6593 6993 1.708341 ACCTTTTCACAGCCATGCTT 58.292 45.000 0.00 0.00 36.40 3.91
6673 7081 1.221840 GGAATGCAAGAGCTCCCGA 59.778 57.895 10.93 0.00 42.74 5.14
6710 7118 0.830648 CCTCCTCTCCGCCATTGTTA 59.169 55.000 0.00 0.00 0.00 2.41
6712 7120 2.158755 CCTCCTCTCCGCCATTGTTATT 60.159 50.000 0.00 0.00 0.00 1.40
6727 7135 3.146066 TGTTATTGTGCTCGCCTTCTTT 58.854 40.909 0.00 0.00 0.00 2.52
6752 7160 0.950836 GCAATGCGGTATGTATGCCA 59.049 50.000 0.00 0.00 32.29 4.92
6763 7171 2.489938 TGTATGCCACTGGTTCCTTC 57.510 50.000 0.00 0.00 0.00 3.46
6795 7203 2.012673 CACACTTCTTCCCTAGCATGC 58.987 52.381 10.51 10.51 0.00 4.06
6818 7226 2.075338 AGAGGACGTACACTCGAGTTC 58.925 52.381 17.26 10.59 38.72 3.01
6821 7229 2.818432 AGGACGTACACTCGAGTTCAAT 59.182 45.455 17.26 4.46 34.70 2.57
6824 7232 4.089636 GGACGTACACTCGAGTTCAATTTC 59.910 45.833 17.26 8.20 34.70 2.17
6853 7261 1.843421 CCACCTTCACCCCTCAACA 59.157 57.895 0.00 0.00 0.00 3.33
6883 7291 4.950744 GCACTTGCTGCGAAATGT 57.049 50.000 0.00 0.00 35.72 2.71
6884 7292 2.427360 GCACTTGCTGCGAAATGTG 58.573 52.632 3.97 3.97 35.72 3.21
6885 7293 0.318107 GCACTTGCTGCGAAATGTGT 60.318 50.000 8.87 0.00 35.72 3.72
6886 7294 1.401530 CACTTGCTGCGAAATGTGTG 58.598 50.000 0.00 0.00 0.00 3.82
6887 7295 0.318107 ACTTGCTGCGAAATGTGTGC 60.318 50.000 0.00 0.00 0.00 4.57
6888 7296 1.332180 CTTGCTGCGAAATGTGTGCG 61.332 55.000 0.00 0.00 0.00 5.34
6889 7297 2.502510 GCTGCGAAATGTGTGCGG 60.503 61.111 0.00 0.00 38.04 5.69
6890 7298 2.965147 GCTGCGAAATGTGTGCGGA 61.965 57.895 0.00 0.00 37.16 5.54
6891 7299 1.133253 CTGCGAAATGTGTGCGGAG 59.867 57.895 0.00 0.00 37.16 4.63
6892 7300 1.568612 CTGCGAAATGTGTGCGGAGT 61.569 55.000 0.00 0.00 38.43 3.85
6893 7301 1.163420 TGCGAAATGTGTGCGGAGTT 61.163 50.000 0.00 0.00 0.00 3.01
6894 7302 0.040425 GCGAAATGTGTGCGGAGTTT 60.040 50.000 0.00 0.00 0.00 2.66
6895 7303 1.599419 GCGAAATGTGTGCGGAGTTTT 60.599 47.619 0.00 0.00 0.00 2.43
6896 7304 2.350007 GCGAAATGTGTGCGGAGTTTTA 60.350 45.455 0.00 0.00 0.00 1.52
6897 7305 3.669557 GCGAAATGTGTGCGGAGTTTTAT 60.670 43.478 0.00 0.00 0.00 1.40
6898 7306 3.845775 CGAAATGTGTGCGGAGTTTTATG 59.154 43.478 0.00 0.00 0.00 1.90
6899 7307 2.919666 ATGTGTGCGGAGTTTTATGC 57.080 45.000 0.00 0.00 0.00 3.14
6900 7308 0.878416 TGTGTGCGGAGTTTTATGCC 59.122 50.000 0.00 0.00 0.00 4.40
6901 7309 0.878416 GTGTGCGGAGTTTTATGCCA 59.122 50.000 0.00 0.00 0.00 4.92
6902 7310 1.268352 GTGTGCGGAGTTTTATGCCAA 59.732 47.619 0.00 0.00 0.00 4.52
6903 7311 1.957177 TGTGCGGAGTTTTATGCCAAA 59.043 42.857 0.00 0.00 0.00 3.28
6904 7312 2.560542 TGTGCGGAGTTTTATGCCAAAT 59.439 40.909 0.00 0.00 0.00 2.32
6905 7313 3.006323 TGTGCGGAGTTTTATGCCAAATT 59.994 39.130 0.00 0.00 0.00 1.82
6906 7314 3.993736 GTGCGGAGTTTTATGCCAAATTT 59.006 39.130 0.00 0.00 0.00 1.82
6907 7315 4.091365 GTGCGGAGTTTTATGCCAAATTTC 59.909 41.667 0.00 0.00 0.00 2.17
6908 7316 3.303229 GCGGAGTTTTATGCCAAATTTCG 59.697 43.478 0.00 0.00 29.76 3.46
6909 7317 3.303229 CGGAGTTTTATGCCAAATTTCGC 59.697 43.478 0.27 0.27 0.00 4.70
6910 7318 3.616821 GGAGTTTTATGCCAAATTTCGCC 59.383 43.478 5.29 0.00 0.00 5.54
6911 7319 3.249917 AGTTTTATGCCAAATTTCGCCG 58.750 40.909 5.29 0.00 0.00 6.46
6912 7320 3.057174 AGTTTTATGCCAAATTTCGCCGA 60.057 39.130 5.29 0.00 0.00 5.54
6913 7321 3.577649 TTTATGCCAAATTTCGCCGAA 57.422 38.095 5.29 0.00 0.00 4.30
6914 7322 3.577649 TTATGCCAAATTTCGCCGAAA 57.422 38.095 15.36 15.36 35.94 3.46
6915 7323 2.671130 ATGCCAAATTTCGCCGAAAT 57.329 40.000 18.74 18.74 43.07 2.17
6916 7324 1.707632 TGCCAAATTTCGCCGAAATG 58.292 45.000 24.23 14.84 40.77 2.32
6917 7325 1.000283 TGCCAAATTTCGCCGAAATGT 60.000 42.857 24.23 17.13 40.77 2.71
6918 7326 2.229062 TGCCAAATTTCGCCGAAATGTA 59.771 40.909 24.23 9.97 40.77 2.29
6919 7327 3.119316 TGCCAAATTTCGCCGAAATGTAT 60.119 39.130 24.23 11.92 40.77 2.29
6920 7328 3.242712 GCCAAATTTCGCCGAAATGTATG 59.757 43.478 24.23 20.85 40.77 2.39
6921 7329 3.242712 CCAAATTTCGCCGAAATGTATGC 59.757 43.478 24.23 0.00 40.77 3.14
6922 7330 2.774439 ATTTCGCCGAAATGTATGCC 57.226 45.000 23.08 0.00 40.24 4.40
6923 7331 0.375454 TTTCGCCGAAATGTATGCCG 59.625 50.000 8.43 0.00 0.00 5.69
6924 7332 1.433053 TTCGCCGAAATGTATGCCGG 61.433 55.000 0.00 0.00 44.34 6.13
6925 7333 2.177580 CGCCGAAATGTATGCCGGT 61.178 57.895 1.90 0.00 43.51 5.28
6926 7334 1.711060 CGCCGAAATGTATGCCGGTT 61.711 55.000 1.90 0.00 43.51 4.44
6927 7335 0.028902 GCCGAAATGTATGCCGGTTC 59.971 55.000 1.90 0.00 43.51 3.62
6928 7336 1.663695 CCGAAATGTATGCCGGTTCT 58.336 50.000 1.90 0.00 37.40 3.01
6929 7337 2.014128 CCGAAATGTATGCCGGTTCTT 58.986 47.619 1.90 0.00 37.40 2.52
6930 7338 3.199677 CCGAAATGTATGCCGGTTCTTA 58.800 45.455 1.90 0.00 37.40 2.10
6931 7339 3.247648 CCGAAATGTATGCCGGTTCTTAG 59.752 47.826 1.90 0.00 37.40 2.18
6932 7340 3.869246 CGAAATGTATGCCGGTTCTTAGT 59.131 43.478 1.90 0.00 0.00 2.24
6933 7341 5.045215 CGAAATGTATGCCGGTTCTTAGTA 58.955 41.667 1.90 0.00 0.00 1.82
6934 7342 5.521010 CGAAATGTATGCCGGTTCTTAGTAA 59.479 40.000 1.90 0.00 0.00 2.24
6935 7343 6.509039 CGAAATGTATGCCGGTTCTTAGTAAC 60.509 42.308 1.90 0.00 0.00 2.50
6936 7344 4.804868 TGTATGCCGGTTCTTAGTAACA 57.195 40.909 1.90 0.00 0.00 2.41
6937 7345 5.149973 TGTATGCCGGTTCTTAGTAACAA 57.850 39.130 1.90 0.00 0.00 2.83
6938 7346 5.736813 TGTATGCCGGTTCTTAGTAACAAT 58.263 37.500 1.90 0.00 0.00 2.71
6939 7347 5.583061 TGTATGCCGGTTCTTAGTAACAATG 59.417 40.000 1.90 0.00 0.00 2.82
6940 7348 4.010667 TGCCGGTTCTTAGTAACAATGT 57.989 40.909 1.90 0.00 0.00 2.71
6941 7349 4.391155 TGCCGGTTCTTAGTAACAATGTT 58.609 39.130 1.90 3.43 0.00 2.71
6942 7350 4.214545 TGCCGGTTCTTAGTAACAATGTTG 59.785 41.667 9.15 0.00 0.00 3.33
6943 7351 4.214758 GCCGGTTCTTAGTAACAATGTTGT 59.785 41.667 9.15 0.00 44.72 3.32
6944 7352 5.685841 CCGGTTCTTAGTAACAATGTTGTG 58.314 41.667 9.15 0.00 41.31 3.33
6945 7353 5.237779 CCGGTTCTTAGTAACAATGTTGTGT 59.762 40.000 9.15 0.00 41.31 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.574702 GCAAACCGCGCTTTACTCCT 61.575 55.000 5.56 0.00 0.00 3.69
47 48 1.526464 CCAATGTTTTCTGCAAACCGC 59.474 47.619 0.64 0.00 43.87 5.68
89 90 3.006430 TGCGTGAGAAAGAGTGGTATCAA 59.994 43.478 0.00 0.00 0.00 2.57
109 110 1.947456 GTCAATAACGAAGGGGGATGC 59.053 52.381 0.00 0.00 0.00 3.91
112 113 1.979308 TGTGTCAATAACGAAGGGGGA 59.021 47.619 0.00 0.00 0.00 4.81
165 166 9.688592 ATTGAAGAATTTGTGAGACTTCATTTC 57.311 29.630 0.00 0.00 43.66 2.17
169 170 7.806409 TCATTGAAGAATTTGTGAGACTTCA 57.194 32.000 0.00 0.00 42.93 3.02
184 185 6.653020 AGCTACATGTATGGTTCATTGAAGA 58.347 36.000 5.91 0.00 0.00 2.87
185 186 6.932356 AGCTACATGTATGGTTCATTGAAG 57.068 37.500 5.91 0.00 0.00 3.02
193 194 6.239217 TCAGATCAAGCTACATGTATGGTT 57.761 37.500 5.91 9.50 0.00 3.67
206 207 2.295885 CCATGGAGGTTCAGATCAAGC 58.704 52.381 5.56 0.00 0.00 4.01
248 249 0.324923 TCTGGGCACGGGTACATAGT 60.325 55.000 0.00 0.00 0.00 2.12
249 250 0.104304 GTCTGGGCACGGGTACATAG 59.896 60.000 0.00 0.00 0.00 2.23
250 251 1.332144 GGTCTGGGCACGGGTACATA 61.332 60.000 0.00 0.00 0.00 2.29
251 252 2.666098 GGTCTGGGCACGGGTACAT 61.666 63.158 0.00 0.00 0.00 2.29
256 257 4.704833 CTGTGGTCTGGGCACGGG 62.705 72.222 0.00 0.00 0.00 5.28
268 269 1.553248 TGGTCCTCGATAAACCTGTGG 59.447 52.381 11.06 0.00 34.05 4.17
273 274 3.898529 CGATAGTGGTCCTCGATAAACC 58.101 50.000 4.50 4.50 34.41 3.27
309 310 6.009589 TGAATGAAGCTTTGTTAATGGAGGA 58.990 36.000 0.00 0.00 0.00 3.71
326 327 6.770303 TGTGTCTGTGGTTCTTTATGAATGAA 59.230 34.615 0.00 0.00 36.99 2.57
327 328 6.295249 TGTGTCTGTGGTTCTTTATGAATGA 58.705 36.000 0.00 0.00 36.99 2.57
328 329 6.558771 TGTGTCTGTGGTTCTTTATGAATG 57.441 37.500 0.00 0.00 36.99 2.67
333 334 5.003804 GGTGATGTGTCTGTGGTTCTTTAT 58.996 41.667 0.00 0.00 0.00 1.40
345 346 2.592102 AAGGCAATGGTGATGTGTCT 57.408 45.000 0.00 0.00 0.00 3.41
375 376 2.699954 AGTGCAGTTCGGATGTTTAGG 58.300 47.619 0.00 0.00 0.00 2.69
411 412 3.327757 ACCCAGCTAAAGATGTGTCTTCA 59.672 43.478 0.00 0.00 43.80 3.02
412 413 3.944087 ACCCAGCTAAAGATGTGTCTTC 58.056 45.455 0.00 0.00 43.80 2.87
415 416 3.010420 GGAACCCAGCTAAAGATGTGTC 58.990 50.000 0.00 0.00 0.00 3.67
416 417 2.375174 TGGAACCCAGCTAAAGATGTGT 59.625 45.455 0.00 0.00 0.00 3.72
420 432 3.117738 CCTCATGGAACCCAGCTAAAGAT 60.118 47.826 0.00 0.00 36.75 2.40
441 453 0.746063 TGATTGCGGGCATGAAATCC 59.254 50.000 0.00 0.00 0.00 3.01
469 481 1.002379 ACACGACGAGAGGTAGCCT 60.002 57.895 0.00 0.00 36.03 4.58
475 487 0.875728 AGAGTTCACACGACGAGAGG 59.124 55.000 0.00 0.00 0.00 3.69
476 488 1.462705 CGAGAGTTCACACGACGAGAG 60.463 57.143 0.00 0.00 0.00 3.20
477 489 0.511653 CGAGAGTTCACACGACGAGA 59.488 55.000 0.00 0.00 0.00 4.04
479 491 1.082300 GCGAGAGTTCACACGACGA 60.082 57.895 0.00 0.00 0.00 4.20
480 492 0.933047 TTGCGAGAGTTCACACGACG 60.933 55.000 0.00 0.00 0.00 5.12
481 493 1.387084 GATTGCGAGAGTTCACACGAC 59.613 52.381 0.00 0.00 0.00 4.34
482 494 1.698165 GATTGCGAGAGTTCACACGA 58.302 50.000 0.00 0.00 0.00 4.35
483 495 0.363512 CGATTGCGAGAGTTCACACG 59.636 55.000 0.00 0.00 40.82 4.49
484 496 0.093705 GCGATTGCGAGAGTTCACAC 59.906 55.000 0.00 0.00 40.82 3.82
485 497 1.014044 GGCGATTGCGAGAGTTCACA 61.014 55.000 0.00 0.00 44.10 3.58
486 498 1.014044 TGGCGATTGCGAGAGTTCAC 61.014 55.000 0.00 0.00 44.10 3.18
487 499 1.291906 TGGCGATTGCGAGAGTTCA 59.708 52.632 0.00 0.00 44.10 3.18
488 500 4.185413 TGGCGATTGCGAGAGTTC 57.815 55.556 0.00 0.00 44.10 3.01
494 506 3.899981 AAGTGGCTGGCGATTGCGA 62.900 57.895 0.00 0.00 44.10 5.10
495 507 2.981560 AAAGTGGCTGGCGATTGCG 61.982 57.895 0.00 0.00 44.10 4.85
496 508 1.444895 CAAAGTGGCTGGCGATTGC 60.445 57.895 0.00 0.00 41.71 3.56
497 509 1.444895 GCAAAGTGGCTGGCGATTG 60.445 57.895 8.42 8.42 0.00 2.67
498 510 2.639327 GGCAAAGTGGCTGGCGATT 61.639 57.895 0.00 0.00 40.14 3.34
499 511 3.064324 GGCAAAGTGGCTGGCGAT 61.064 61.111 0.00 0.00 40.14 4.58
506 518 1.115326 ACCCAAGAAGGCAAAGTGGC 61.115 55.000 0.00 0.00 44.10 5.01
507 519 0.675633 CACCCAAGAAGGCAAAGTGG 59.324 55.000 0.00 0.00 35.39 4.00
508 520 0.675633 CCACCCAAGAAGGCAAAGTG 59.324 55.000 0.00 0.00 35.39 3.16
509 521 0.555769 TCCACCCAAGAAGGCAAAGT 59.444 50.000 0.00 0.00 35.39 2.66
545 557 6.488683 AGGTGTGGATGAATTCGTCTTTAAAA 59.511 34.615 23.52 3.98 32.61 1.52
548 560 5.160607 AGGTGTGGATGAATTCGTCTTTA 57.839 39.130 23.52 10.54 32.61 1.85
561 573 4.583871 GTCTTCATGAGAAAGGTGTGGAT 58.416 43.478 0.00 0.00 35.79 3.41
565 577 4.336889 TTCGTCTTCATGAGAAAGGTGT 57.663 40.909 0.00 0.00 35.79 4.16
572 584 4.238761 AGTCGTTTTCGTCTTCATGAGA 57.761 40.909 0.00 0.00 44.46 3.27
576 588 6.214399 ACTTCTAAGTCGTTTTCGTCTTCAT 58.786 36.000 3.86 0.00 45.12 2.57
581 593 4.084693 CCCAACTTCTAAGTCGTTTTCGTC 60.085 45.833 0.00 0.00 44.46 4.20
583 595 3.363673 GCCCAACTTCTAAGTCGTTTTCG 60.364 47.826 0.00 0.00 45.64 3.46
588 600 1.067776 CGAGCCCAACTTCTAAGTCGT 60.068 52.381 0.00 0.00 38.57 4.34
590 602 2.745515 ACGAGCCCAACTTCTAAGTC 57.254 50.000 0.00 0.00 38.57 3.01
591 603 3.071167 AGAAACGAGCCCAACTTCTAAGT 59.929 43.478 0.00 0.00 42.04 2.24
614 626 0.478507 GGAACCATGGTAGGGATGGG 59.521 60.000 20.12 0.00 44.22 4.00
618 630 1.200519 CGAAGGAACCATGGTAGGGA 58.799 55.000 20.12 0.00 0.00 4.20
623 635 1.628340 TCATGTCGAAGGAACCATGGT 59.372 47.619 13.00 13.00 36.27 3.55
648 660 3.072468 TCGCCGTCCGAGGGAATT 61.072 61.111 11.42 0.00 41.89 2.17
717 730 2.594592 AAACTCCACGCTGGGTGC 60.595 61.111 18.35 0.00 45.62 5.01
718 731 0.606401 ATCAAACTCCACGCTGGGTG 60.606 55.000 17.01 17.01 46.57 4.61
719 732 0.321653 GATCAAACTCCACGCTGGGT 60.322 55.000 4.52 0.00 38.32 4.51
720 733 1.026718 GGATCAAACTCCACGCTGGG 61.027 60.000 0.00 0.00 38.32 4.45
721 734 0.321564 TGGATCAAACTCCACGCTGG 60.322 55.000 0.00 0.00 40.43 4.85
722 735 3.231734 TGGATCAAACTCCACGCTG 57.768 52.632 0.00 0.00 40.43 5.18
850 863 4.666253 TGTCTGCCCCTTGCCTGC 62.666 66.667 0.00 0.00 40.16 4.85
867 880 2.698274 CCTTGGGTTTAGGTGTTTTGCT 59.302 45.455 0.00 0.00 0.00 3.91
890 903 2.548295 GCGTGTTTTCCCTTGCGGA 61.548 57.895 0.00 0.00 39.68 5.54
897 910 1.942223 GTGTTGCGCGTGTTTTCCC 60.942 57.895 8.43 0.00 0.00 3.97
904 917 4.980903 GCCTTGGTGTTGCGCGTG 62.981 66.667 8.43 0.00 0.00 5.34
906 919 4.688419 CTGCCTTGGTGTTGCGCG 62.688 66.667 0.00 0.00 0.00 6.86
1153 1184 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
1155 1186 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
1156 1187 1.541672 CTCCCTCTCCCTCTCCCTC 59.458 68.421 0.00 0.00 0.00 4.30
1157 1188 2.710826 GCTCCCTCTCCCTCTCCCT 61.711 68.421 0.00 0.00 0.00 4.20
1158 1189 2.123033 GCTCCCTCTCCCTCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
1159 1190 2.520741 CGCTCCCTCTCCCTCTCC 60.521 72.222 0.00 0.00 0.00 3.71
1160 1191 2.520741 CCGCTCCCTCTCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
1161 1192 4.150454 CCCGCTCCCTCTCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
1162 1193 4.144727 TCCCGCTCCCTCTCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
1163 1194 4.150454 CTCCCGCTCCCTCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
1383 1415 1.525175 GAGGAGGAGGAGAGAGGGTA 58.475 60.000 0.00 0.00 0.00 3.69
1405 1451 2.607892 GCGCGGATCCATGGCTAAC 61.608 63.158 13.41 0.00 0.00 2.34
1465 1511 1.065928 ACGGATCCAATCGAGCGTC 59.934 57.895 13.41 0.00 0.00 5.19
1468 1514 1.528586 CAATCACGGATCCAATCGAGC 59.471 52.381 13.41 0.00 0.00 5.03
1499 1546 2.899339 GAGCAATCAGAGCCCCGC 60.899 66.667 0.00 0.00 0.00 6.13
1536 1583 1.463553 AACCCTGCGGCCAAAAGAAG 61.464 55.000 2.24 0.00 0.00 2.85
1538 1585 1.901464 GAACCCTGCGGCCAAAAGA 60.901 57.895 2.24 0.00 0.00 2.52
1540 1587 2.915137 GGAACCCTGCGGCCAAAA 60.915 61.111 2.24 0.00 0.00 2.44
1690 1737 9.213799 CTCTAAAGAAGTTTAGCAGAGAAACAT 57.786 33.333 1.54 0.00 43.43 2.71
1700 1747 4.833390 TCTGGCCTCTAAAGAAGTTTAGC 58.167 43.478 3.32 0.00 43.43 3.09
1874 1952 4.426313 CTTGGGGCGGGGGTCTTC 62.426 72.222 0.00 0.00 0.00 2.87
1924 2003 9.010029 ACTACTCATAAAGGTTAAACAACATGG 57.990 33.333 0.00 0.00 0.00 3.66
2022 2102 6.547510 GGCAAGTTCATTCATACCTTAGGAAT 59.452 38.462 4.77 0.00 39.51 3.01
2024 2104 5.191722 AGGCAAGTTCATTCATACCTTAGGA 59.808 40.000 4.77 0.00 0.00 2.94
2026 2106 6.375455 ACAAGGCAAGTTCATTCATACCTTAG 59.625 38.462 0.00 0.00 34.59 2.18
2027 2107 6.245408 ACAAGGCAAGTTCATTCATACCTTA 58.755 36.000 0.00 0.00 34.59 2.69
2029 2109 4.666512 ACAAGGCAAGTTCATTCATACCT 58.333 39.130 0.00 0.00 0.00 3.08
2031 2111 8.986477 AAATAACAAGGCAAGTTCATTCATAC 57.014 30.769 0.00 0.00 0.00 2.39
2032 2112 9.023962 AGAAATAACAAGGCAAGTTCATTCATA 57.976 29.630 15.34 0.00 31.49 2.15
2033 2113 7.899973 AGAAATAACAAGGCAAGTTCATTCAT 58.100 30.769 15.34 0.00 31.49 2.57
2034 2114 7.231317 AGAGAAATAACAAGGCAAGTTCATTCA 59.769 33.333 15.34 0.00 31.49 2.57
2035 2115 7.597386 AGAGAAATAACAAGGCAAGTTCATTC 58.403 34.615 0.00 5.21 0.00 2.67
2036 2116 7.309438 GGAGAGAAATAACAAGGCAAGTTCATT 60.309 37.037 0.00 0.00 0.00 2.57
2157 2237 4.693566 CCATCGTCCAAGCTAACAAAACTA 59.306 41.667 0.00 0.00 0.00 2.24
2178 2258 4.697828 ACAACGATACATAAATGCACACCA 59.302 37.500 0.00 0.00 0.00 4.17
2355 2440 3.092403 CGTGGATGTGCGATGTGG 58.908 61.111 0.00 0.00 0.00 4.17
2399 2485 0.700564 CTATGGGATGGGATGTGGGG 59.299 60.000 0.00 0.00 0.00 4.96
2406 2492 1.464001 CTGGGCCTATGGGATGGGA 60.464 63.158 4.53 0.00 31.57 4.37
2440 2526 5.487488 TCCCTGAGAAAGGTAGCTATTTCAA 59.513 40.000 17.81 8.12 45.78 2.69
2495 2581 1.841302 TTCGCTGAGGCTGGATGGTT 61.841 55.000 0.00 0.00 36.09 3.67
2519 2605 1.987855 CCAACGCTGAGGGGGTCTA 60.988 63.158 0.51 0.00 40.30 2.59
2606 2692 4.700268 TGCATAGGTTAACAACATGCTG 57.300 40.909 25.64 0.00 39.90 4.41
2625 2711 7.862873 GGTAAGCAGTTAAGGAATATCAAATGC 59.137 37.037 0.00 0.00 41.03 3.56
2990 3083 7.307337 CCAAAAAGAGTGCCAACAATACAATTC 60.307 37.037 0.00 0.00 0.00 2.17
3180 3273 0.982704 TGGGCATGTTTTGAATGGGG 59.017 50.000 0.00 0.00 0.00 4.96
3309 3402 1.068610 CCATTGCCACTGGTGTTAACG 60.069 52.381 0.26 0.00 0.00 3.18
3320 3413 0.248289 ATTTGCTGCTCCATTGCCAC 59.752 50.000 0.00 0.00 0.00 5.01
3342 3435 4.398247 GTGAAATTGACGAGCTGAATGAC 58.602 43.478 0.00 0.00 0.00 3.06
3516 3640 0.252197 GGTAGCACCCAATTCCGTCT 59.748 55.000 0.00 0.00 30.04 4.18
3557 3681 6.922957 TGTATTTTTCATTTCTGCTTCCACAC 59.077 34.615 0.00 0.00 0.00 3.82
3576 3700 9.639563 AAATTCATTTTTGGGGTTTCTGTATTT 57.360 25.926 0.00 0.00 0.00 1.40
3577 3701 9.065798 CAAATTCATTTTTGGGGTTTCTGTATT 57.934 29.630 0.00 0.00 33.81 1.89
3578 3702 8.620116 CAAATTCATTTTTGGGGTTTCTGTAT 57.380 30.769 0.00 0.00 33.81 2.29
3635 3760 1.891919 GCTTCCGTTGCTGTGTCCA 60.892 57.895 0.00 0.00 0.00 4.02
3642 3778 3.767630 AACACCCGCTTCCGTTGCT 62.768 57.895 0.00 0.00 0.00 3.91
3691 3827 8.154649 TGTTGGTTTGCTTTTTGTTTTTCTTA 57.845 26.923 0.00 0.00 0.00 2.10
3873 4017 2.036098 CCATGTGAGGCCTGGCAA 59.964 61.111 22.05 2.04 0.00 4.52
3882 4026 2.832129 ACTATATACGGGCCCATGTGAG 59.168 50.000 24.92 13.56 0.00 3.51
3884 4028 4.811969 TTACTATATACGGGCCCATGTG 57.188 45.455 24.92 7.89 0.00 3.21
3886 4030 4.634443 GCTTTTACTATATACGGGCCCATG 59.366 45.833 24.92 9.21 0.00 3.66
3888 4032 3.306225 CGCTTTTACTATATACGGGCCCA 60.306 47.826 24.92 2.47 0.00 5.36
3889 4033 3.256558 CGCTTTTACTATATACGGGCCC 58.743 50.000 13.57 13.57 0.00 5.80
3890 4034 3.056607 TCCGCTTTTACTATATACGGGCC 60.057 47.826 0.00 0.00 39.59 5.80
3892 4036 7.148523 GGAATTTCCGCTTTTACTATATACGGG 60.149 40.741 0.00 0.00 39.59 5.28
3893 4037 7.385752 TGGAATTTCCGCTTTTACTATATACGG 59.614 37.037 10.79 0.00 40.17 4.02
3908 4110 2.875933 TCCGTGATTATGGAATTTCCGC 59.124 45.455 10.79 0.00 40.17 5.54
3922 4124 2.148768 GGAACTTTCCGTTTCCGTGAT 58.851 47.619 0.00 0.00 37.65 3.06
4026 4231 2.851824 GCTTTTCGTAATGCGGAAATGG 59.148 45.455 0.00 0.00 45.83 3.16
4027 4232 2.525891 CGCTTTTCGTAATGCGGAAATG 59.474 45.455 21.79 0.00 45.83 2.32
4028 4233 2.780993 CGCTTTTCGTAATGCGGAAAT 58.219 42.857 21.79 0.00 45.83 2.17
4034 4239 3.197434 ACTTTCCGCTTTTCGTAATGC 57.803 42.857 3.02 3.02 36.19 3.56
4037 4242 4.787245 GCAGAAACTTTCCGCTTTTCGTAA 60.787 41.667 2.91 0.00 34.94 3.18
4040 4245 2.044135 GCAGAAACTTTCCGCTTTTCG 58.956 47.619 2.91 0.00 34.94 3.46
4048 4273 6.367149 GGATGAAAATGAAGCAGAAACTTTCC 59.633 38.462 0.00 0.00 0.00 3.13
4056 4281 5.178096 TGTAGGGATGAAAATGAAGCAGA 57.822 39.130 0.00 0.00 0.00 4.26
4157 4382 9.331282 CCTAAATTCCTCTCAGGTGTTTATAAG 57.669 37.037 0.00 0.00 36.53 1.73
4221 4446 8.910944 CCATATTGTTCTCTGATTTCCTTTCAT 58.089 33.333 0.00 0.00 0.00 2.57
4222 4447 8.108999 TCCATATTGTTCTCTGATTTCCTTTCA 58.891 33.333 0.00 0.00 0.00 2.69
4223 4448 8.401709 GTCCATATTGTTCTCTGATTTCCTTTC 58.598 37.037 0.00 0.00 0.00 2.62
4224 4449 8.112183 AGTCCATATTGTTCTCTGATTTCCTTT 58.888 33.333 0.00 0.00 0.00 3.11
4225 4450 7.637511 AGTCCATATTGTTCTCTGATTTCCTT 58.362 34.615 0.00 0.00 0.00 3.36
4226 4451 7.205515 AGTCCATATTGTTCTCTGATTTCCT 57.794 36.000 0.00 0.00 0.00 3.36
4227 4452 8.964476 TTAGTCCATATTGTTCTCTGATTTCC 57.036 34.615 0.00 0.00 0.00 3.13
4261 4486 9.853177 CCTAAATTCCTCTCAGGTGTTTATAAT 57.147 33.333 0.00 0.00 36.53 1.28
4262 4487 7.773690 GCCTAAATTCCTCTCAGGTGTTTATAA 59.226 37.037 0.00 0.00 36.53 0.98
4263 4488 7.092623 TGCCTAAATTCCTCTCAGGTGTTTATA 60.093 37.037 0.00 0.00 36.53 0.98
4264 4489 6.122964 GCCTAAATTCCTCTCAGGTGTTTAT 58.877 40.000 0.00 0.00 36.53 1.40
4265 4490 5.013704 TGCCTAAATTCCTCTCAGGTGTTTA 59.986 40.000 0.00 0.00 36.53 2.01
4266 4491 4.202567 TGCCTAAATTCCTCTCAGGTGTTT 60.203 41.667 0.00 0.00 36.53 2.83
4267 4492 3.330701 TGCCTAAATTCCTCTCAGGTGTT 59.669 43.478 0.00 0.00 36.53 3.32
4268 4493 2.912956 TGCCTAAATTCCTCTCAGGTGT 59.087 45.455 0.00 0.00 36.53 4.16
4269 4494 3.634397 TGCCTAAATTCCTCTCAGGTG 57.366 47.619 0.00 0.00 36.53 4.00
4270 4495 3.846588 TCTTGCCTAAATTCCTCTCAGGT 59.153 43.478 0.00 0.00 36.53 4.00
4271 4496 4.494091 TCTTGCCTAAATTCCTCTCAGG 57.506 45.455 0.00 0.00 36.46 3.86
4272 4497 6.600822 TGAAATCTTGCCTAAATTCCTCTCAG 59.399 38.462 0.00 0.00 0.00 3.35
4273 4498 6.484288 TGAAATCTTGCCTAAATTCCTCTCA 58.516 36.000 0.00 0.00 0.00 3.27
4274 4499 7.579761 ATGAAATCTTGCCTAAATTCCTCTC 57.420 36.000 0.00 0.00 0.00 3.20
4275 4500 7.579761 GATGAAATCTTGCCTAAATTCCTCT 57.420 36.000 0.00 0.00 41.17 3.69
4310 4535 9.845740 TGTTGCTCCTAATATACATGTATTGTT 57.154 29.630 22.90 18.71 39.87 2.83
4400 4625 8.629158 TGAGTAAACAACAAGAGCAAACATAAT 58.371 29.630 0.00 0.00 0.00 1.28
4423 4648 3.841643 GTGAATTCACAAAGGCCATGAG 58.158 45.455 29.43 7.51 45.75 2.90
4424 4649 3.940209 GTGAATTCACAAAGGCCATGA 57.060 42.857 29.43 5.33 45.75 3.07
4483 4708 1.604593 GTGCAGGTGGCTGTCCAAT 60.605 57.895 0.00 0.00 45.53 3.16
4594 4819 6.828785 TGTAAGAATGAGAATAAAGGGAAGGC 59.171 38.462 0.00 0.00 0.00 4.35
4683 4909 3.676093 CCAACCTTCTTTCCTCCTACAC 58.324 50.000 0.00 0.00 0.00 2.90
4808 5034 5.578005 AAGCTCGTATAACTTGCTCTACA 57.422 39.130 0.00 0.00 33.10 2.74
4858 5086 9.512588 GAAGGAATACATCTCATATTTCCATGT 57.487 33.333 0.00 0.00 0.00 3.21
4890 5118 5.221843 ACAGAGGAAGTATGTAACAAGCCAA 60.222 40.000 0.00 0.00 0.00 4.52
4892 5120 4.833390 ACAGAGGAAGTATGTAACAAGCC 58.167 43.478 0.00 0.00 0.00 4.35
4896 5124 5.970317 TCGAACAGAGGAAGTATGTAACA 57.030 39.130 0.00 0.00 27.65 2.41
4897 5125 7.647907 TTTTCGAACAGAGGAAGTATGTAAC 57.352 36.000 0.00 0.00 27.65 2.50
4898 5126 9.362539 GTATTTTCGAACAGAGGAAGTATGTAA 57.637 33.333 0.00 0.00 27.65 2.41
4912 5140 7.386848 CCTAGAACTTCCAAGTATTTTCGAACA 59.613 37.037 0.00 0.00 38.57 3.18
4916 5144 7.668525 AACCTAGAACTTCCAAGTATTTTCG 57.331 36.000 0.00 0.00 38.57 3.46
5084 5421 8.641541 AGATGATCAAACAAATAAACACCAAGT 58.358 29.630 0.00 0.00 0.00 3.16
5474 5819 5.602978 AGGTGGTATTAGATTTGATCTCCGT 59.397 40.000 0.00 0.00 40.76 4.69
5476 5821 8.214364 AGAAAGGTGGTATTAGATTTGATCTCC 58.786 37.037 0.00 0.00 40.76 3.71
5507 5852 6.135290 TCATCTGTCCACAAAAGTTTCAAG 57.865 37.500 0.00 0.00 0.00 3.02
5608 5953 3.879998 TCAAGCTGTTTACTGAACACCA 58.120 40.909 0.00 0.00 43.13 4.17
5738 6083 2.605338 CCAACACAATCTTTCCACTGCG 60.605 50.000 0.00 0.00 0.00 5.18
5744 6089 4.137543 AGTCAGACCAACACAATCTTTCC 58.862 43.478 0.00 0.00 0.00 3.13
5788 6134 4.463515 GGTACGAAAAGACAGGACAAAC 57.536 45.455 0.00 0.00 0.00 2.93
5808 6156 2.561419 TCTAACAGGTTTCCACTCTCGG 59.439 50.000 0.00 0.00 0.00 4.63
5897 6247 5.578336 TGAAAAGACACTGCTAATCTCATCG 59.422 40.000 0.00 0.00 0.00 3.84
5903 6253 3.181516 CCGCTGAAAAGACACTGCTAATC 60.182 47.826 0.00 0.00 0.00 1.75
5922 6272 4.695231 CAACAGCAGCACAGCCGC 62.695 66.667 0.00 0.00 34.23 6.53
5924 6274 0.603707 TACTCAACAGCAGCACAGCC 60.604 55.000 0.00 0.00 34.23 4.85
6045 6396 4.443457 CGGAGAGAAGAATTGCATTCCCTA 60.443 45.833 0.00 0.00 40.13 3.53
6083 6434 3.314553 TCGTTGCGAAAGGTAAAGAGAG 58.685 45.455 0.00 0.00 31.06 3.20
6116 6467 2.960170 GCAAAGCAGCAGACAGGG 59.040 61.111 0.00 0.00 0.00 4.45
6184 6535 5.641709 CACGTACTAGCATTCTCAGAAAGA 58.358 41.667 0.00 0.00 0.00 2.52
6283 6649 3.430929 GCTTCGGATCCACTCAACATACT 60.431 47.826 13.41 0.00 0.00 2.12
6301 6667 4.342378 ACCTTTTTCCTCCTCTTTTGCTTC 59.658 41.667 0.00 0.00 0.00 3.86
6309 6675 3.244249 CGACTCAACCTTTTTCCTCCTCT 60.244 47.826 0.00 0.00 0.00 3.69
6324 6690 2.285368 ATCCCCCAGCCGACTCAA 60.285 61.111 0.00 0.00 0.00 3.02
6325 6691 2.764128 GATCCCCCAGCCGACTCA 60.764 66.667 0.00 0.00 0.00 3.41
6450 6843 4.486503 GGCAGAGGCAGAGGCAGG 62.487 72.222 0.00 0.00 43.71 4.85
6451 6844 3.388703 GAGGCAGAGGCAGAGGCAG 62.389 68.421 0.00 0.00 43.71 4.85
6452 6845 3.397439 GAGGCAGAGGCAGAGGCA 61.397 66.667 0.00 0.00 43.71 4.75
6453 6846 3.388703 CTGAGGCAGAGGCAGAGGC 62.389 68.421 0.00 0.00 43.71 4.70
6454 6847 1.988956 ACTGAGGCAGAGGCAGAGG 60.989 63.158 0.82 0.00 43.71 3.69
6698 7106 1.742831 GAGCACAATAACAATGGCGGA 59.257 47.619 0.00 0.00 0.00 5.54
6710 7118 1.537202 GACAAAGAAGGCGAGCACAAT 59.463 47.619 0.00 0.00 0.00 2.71
6712 7120 1.221466 CGACAAAGAAGGCGAGCACA 61.221 55.000 0.00 0.00 0.00 4.57
6752 7160 2.566746 AGATGGATGGAAGGAACCAGT 58.433 47.619 0.00 0.00 43.49 4.00
6763 7171 4.878397 GGAAGAAGTGTGTAAGATGGATGG 59.122 45.833 0.00 0.00 0.00 3.51
6806 7214 5.462068 CACACAGAAATTGAACTCGAGTGTA 59.538 40.000 20.85 8.46 35.43 2.90
6812 7220 4.204978 GCAAACACACAGAAATTGAACTCG 59.795 41.667 0.00 0.00 0.00 4.18
6881 7289 0.878416 GGCATAAAACTCCGCACACA 59.122 50.000 0.00 0.00 0.00 3.72
6882 7290 0.878416 TGGCATAAAACTCCGCACAC 59.122 50.000 0.00 0.00 0.00 3.82
6883 7291 1.610363 TTGGCATAAAACTCCGCACA 58.390 45.000 0.00 0.00 0.00 4.57
6884 7292 2.715737 TTTGGCATAAAACTCCGCAC 57.284 45.000 0.00 0.00 0.00 5.34
6885 7293 3.951775 AATTTGGCATAAAACTCCGCA 57.048 38.095 0.00 0.00 0.00 5.69
6886 7294 3.303229 CGAAATTTGGCATAAAACTCCGC 59.697 43.478 0.00 0.00 0.00 5.54
6887 7295 3.303229 GCGAAATTTGGCATAAAACTCCG 59.697 43.478 18.93 1.95 31.76 4.63
6888 7296 3.616821 GGCGAAATTTGGCATAAAACTCC 59.383 43.478 23.98 2.61 33.21 3.85
6889 7297 3.303229 CGGCGAAATTTGGCATAAAACTC 59.697 43.478 23.98 5.78 33.21 3.01
6890 7298 3.057174 TCGGCGAAATTTGGCATAAAACT 60.057 39.130 23.98 0.00 33.21 2.66
6891 7299 3.246619 TCGGCGAAATTTGGCATAAAAC 58.753 40.909 23.98 7.07 33.21 2.43
6892 7300 3.577649 TCGGCGAAATTTGGCATAAAA 57.422 38.095 23.98 4.29 33.21 1.52
6893 7301 3.577649 TTCGGCGAAATTTGGCATAAA 57.422 38.095 21.53 12.95 33.21 1.40
6894 7302 3.577649 TTTCGGCGAAATTTGGCATAA 57.422 38.095 29.31 15.10 33.21 1.90
6895 7303 3.119316 ACATTTCGGCGAAATTTGGCATA 60.119 39.130 37.14 15.33 39.82 3.14
6896 7304 2.270047 CATTTCGGCGAAATTTGGCAT 58.730 42.857 37.14 18.86 39.82 4.40
6897 7305 1.000283 ACATTTCGGCGAAATTTGGCA 60.000 42.857 37.14 16.77 39.82 4.92
6898 7306 1.708822 ACATTTCGGCGAAATTTGGC 58.291 45.000 37.14 16.03 39.82 4.52
6899 7307 3.242712 GCATACATTTCGGCGAAATTTGG 59.757 43.478 37.14 29.00 39.82 3.28
6900 7308 3.242712 GGCATACATTTCGGCGAAATTTG 59.757 43.478 37.14 31.74 39.82 2.32
6901 7309 3.443976 GGCATACATTTCGGCGAAATTT 58.556 40.909 37.14 33.16 39.82 1.82
6902 7310 3.078594 GGCATACATTTCGGCGAAATT 57.921 42.857 37.14 29.11 39.82 1.82
6903 7311 2.774439 GGCATACATTTCGGCGAAAT 57.226 45.000 34.92 34.92 42.14 2.17
6907 7315 1.711060 AACCGGCATACATTTCGGCG 61.711 55.000 0.00 0.00 45.65 6.46
6908 7316 0.028902 GAACCGGCATACATTTCGGC 59.971 55.000 0.00 0.00 45.65 5.54
6909 7317 1.663695 AGAACCGGCATACATTTCGG 58.336 50.000 0.00 0.00 46.95 4.30
6910 7318 3.869246 ACTAAGAACCGGCATACATTTCG 59.131 43.478 0.00 0.00 0.00 3.46
6911 7319 6.314400 TGTTACTAAGAACCGGCATACATTTC 59.686 38.462 0.00 0.00 0.00 2.17
6912 7320 6.174760 TGTTACTAAGAACCGGCATACATTT 58.825 36.000 0.00 0.00 0.00 2.32
6913 7321 5.736813 TGTTACTAAGAACCGGCATACATT 58.263 37.500 0.00 0.00 0.00 2.71
6914 7322 5.347620 TGTTACTAAGAACCGGCATACAT 57.652 39.130 0.00 0.00 0.00 2.29
6915 7323 4.804868 TGTTACTAAGAACCGGCATACA 57.195 40.909 0.00 0.00 0.00 2.29
6916 7324 5.583457 ACATTGTTACTAAGAACCGGCATAC 59.417 40.000 0.00 0.00 0.00 2.39
6917 7325 5.736813 ACATTGTTACTAAGAACCGGCATA 58.263 37.500 0.00 0.00 0.00 3.14
6918 7326 4.585879 ACATTGTTACTAAGAACCGGCAT 58.414 39.130 0.00 0.00 0.00 4.40
6919 7327 4.010667 ACATTGTTACTAAGAACCGGCA 57.989 40.909 0.00 0.00 0.00 5.69
6920 7328 4.214758 ACAACATTGTTACTAAGAACCGGC 59.785 41.667 0.00 0.00 38.47 6.13
6921 7329 5.237779 ACACAACATTGTTACTAAGAACCGG 59.762 40.000 0.00 0.00 39.91 5.28
6922 7330 6.295039 ACACAACATTGTTACTAAGAACCG 57.705 37.500 0.86 0.00 39.91 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.