Multiple sequence alignment - TraesCS5D01G373800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G373800 chr5D 100.000 3588 0 0 1 3588 447195066 447191479 0.000000e+00 6626.0
1 TraesCS5D01G373800 chr5D 82.896 2555 337 51 982 3473 447143349 447140832 0.000000e+00 2206.0
2 TraesCS5D01G373800 chr5D 84.251 654 55 14 1 624 117956470 117957105 8.580000e-166 593.0
3 TraesCS5D01G373800 chr5D 97.297 37 1 0 670 706 384766467 384766431 2.990000e-06 63.9
4 TraesCS5D01G373800 chr5A 94.691 2279 91 6 1297 3570 565416001 565418254 0.000000e+00 3511.0
5 TraesCS5D01G373800 chr5A 81.693 2682 371 72 836 3473 565488208 565490813 0.000000e+00 2122.0
6 TraesCS5D01G373800 chr5A 97.120 625 14 4 1 624 345549152 345548531 0.000000e+00 1051.0
7 TraesCS5D01G373800 chr5A 88.636 88 10 0 675 762 130540665 130540578 1.360000e-19 108.0
8 TraesCS5D01G373800 chr5A 86.517 89 12 0 675 763 528588086 528588174 8.200000e-17 99.0
9 TraesCS5D01G373800 chr5A 97.059 34 1 0 764 797 462776620 462776587 1.390000e-04 58.4
10 TraesCS5D01G373800 chr5B 82.401 2716 373 65 835 3501 545574950 545577609 0.000000e+00 2270.0
11 TraesCS5D01G373800 chr5B 87.500 88 11 0 675 762 133598227 133598140 6.340000e-18 102.0
12 TraesCS5D01G373800 chr5B 86.567 67 6 3 564 628 138848150 138848085 1.790000e-08 71.3
13 TraesCS5D01G373800 chr6A 81.342 2444 366 55 1006 3412 22953053 22955443 0.000000e+00 1905.0
14 TraesCS5D01G373800 chr6A 94.737 38 2 0 667 704 92112675 92112638 3.870000e-05 60.2
15 TraesCS5D01G373800 chr6D 86.367 1225 155 10 2205 3421 24376696 24375476 0.000000e+00 1327.0
16 TraesCS5D01G373800 chr6D 84.271 1227 184 7 2205 3425 24293701 24292478 0.000000e+00 1188.0
17 TraesCS5D01G373800 chr6D 98.046 614 11 1 1 613 467767565 467766952 0.000000e+00 1066.0
18 TraesCS5D01G373800 chr6D 80.018 1136 166 36 1006 2115 24377878 24376778 0.000000e+00 784.0
19 TraesCS5D01G373800 chr6D 79.079 478 84 10 1400 1863 24294754 24294279 7.480000e-82 315.0
20 TraesCS5D01G373800 chr6D 82.955 176 26 3 1092 1265 24384058 24383885 4.800000e-34 156.0
21 TraesCS5D01G373800 chr6B 86.207 1218 156 8 2199 3408 39368312 39369525 0.000000e+00 1308.0
22 TraesCS5D01G373800 chr6B 80.576 973 137 32 1032 1981 39367177 39368120 0.000000e+00 702.0
23 TraesCS5D01G373800 chrUn 83.808 1229 191 7 2204 3425 35133919 35135146 0.000000e+00 1160.0
24 TraesCS5D01G373800 chrUn 90.385 52 4 1 583 633 34101452 34101503 2.310000e-07 67.6
25 TraesCS5D01G373800 chrUn 90.385 52 4 1 583 633 234962333 234962282 2.310000e-07 67.6
26 TraesCS5D01G373800 chr2B 75.765 2451 470 89 1006 3406 28883115 28885491 0.000000e+00 1122.0
27 TraesCS5D01G373800 chr2B 100.000 30 0 0 768 797 164090658 164090687 5.000000e-04 56.5
28 TraesCS5D01G373800 chr7B 97.271 623 17 0 1 623 522882160 522881538 0.000000e+00 1057.0
29 TraesCS5D01G373800 chr7B 100.000 32 0 0 768 799 44939583 44939552 3.870000e-05 60.2
30 TraesCS5D01G373800 chr2A 79.782 643 71 27 1 623 774434647 774435250 2.580000e-111 412.0
31 TraesCS5D01G373800 chr2A 87.234 94 10 2 671 763 769958693 769958785 4.900000e-19 106.0
32 TraesCS5D01G373800 chr2A 94.872 39 2 0 759 797 68246168 68246130 1.080000e-05 62.1
33 TraesCS5D01G373800 chr1B 88.506 87 10 0 675 761 677525018 677525104 4.900000e-19 106.0
34 TraesCS5D01G373800 chr1B 85.057 87 13 0 677 763 426112239 426112325 4.930000e-14 89.8
35 TraesCS5D01G373800 chr3B 87.640 89 8 3 675 761 459102514 459102601 2.280000e-17 100.0
36 TraesCS5D01G373800 chr3B 94.872 39 2 0 759 797 828428810 828428772 1.080000e-05 62.1
37 TraesCS5D01G373800 chr1A 87.356 87 11 0 677 763 394878067 394878153 2.280000e-17 100.0
38 TraesCS5D01G373800 chr1A 93.750 48 1 2 586 632 528845008 528844962 1.790000e-08 71.3
39 TraesCS5D01G373800 chr2D 87.209 86 11 0 678 763 133769414 133769499 8.200000e-17 99.0
40 TraesCS5D01G373800 chr2D 95.238 42 1 1 758 798 651005004 651005045 8.320000e-07 65.8
41 TraesCS5D01G373800 chr7D 97.436 39 1 0 759 797 529775709 529775747 2.310000e-07 67.6
42 TraesCS5D01G373800 chr7D 97.059 34 1 0 764 797 575594017 575593984 1.390000e-04 58.4
43 TraesCS5D01G373800 chr3A 97.059 34 1 0 765 798 414818171 414818204 1.390000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G373800 chr5D 447191479 447195066 3587 True 6626.0 6626 100.0000 1 3588 1 chr5D.!!$R3 3587
1 TraesCS5D01G373800 chr5D 447140832 447143349 2517 True 2206.0 2206 82.8960 982 3473 1 chr5D.!!$R2 2491
2 TraesCS5D01G373800 chr5D 117956470 117957105 635 False 593.0 593 84.2510 1 624 1 chr5D.!!$F1 623
3 TraesCS5D01G373800 chr5A 565416001 565418254 2253 False 3511.0 3511 94.6910 1297 3570 1 chr5A.!!$F2 2273
4 TraesCS5D01G373800 chr5A 565488208 565490813 2605 False 2122.0 2122 81.6930 836 3473 1 chr5A.!!$F3 2637
5 TraesCS5D01G373800 chr5A 345548531 345549152 621 True 1051.0 1051 97.1200 1 624 1 chr5A.!!$R2 623
6 TraesCS5D01G373800 chr5B 545574950 545577609 2659 False 2270.0 2270 82.4010 835 3501 1 chr5B.!!$F1 2666
7 TraesCS5D01G373800 chr6A 22953053 22955443 2390 False 1905.0 1905 81.3420 1006 3412 1 chr6A.!!$F1 2406
8 TraesCS5D01G373800 chr6D 467766952 467767565 613 True 1066.0 1066 98.0460 1 613 1 chr6D.!!$R2 612
9 TraesCS5D01G373800 chr6D 24375476 24377878 2402 True 1055.5 1327 83.1925 1006 3421 2 chr6D.!!$R4 2415
10 TraesCS5D01G373800 chr6D 24292478 24294754 2276 True 751.5 1188 81.6750 1400 3425 2 chr6D.!!$R3 2025
11 TraesCS5D01G373800 chr6B 39367177 39369525 2348 False 1005.0 1308 83.3915 1032 3408 2 chr6B.!!$F1 2376
12 TraesCS5D01G373800 chrUn 35133919 35135146 1227 False 1160.0 1160 83.8080 2204 3425 1 chrUn.!!$F2 1221
13 TraesCS5D01G373800 chr2B 28883115 28885491 2376 False 1122.0 1122 75.7650 1006 3406 1 chr2B.!!$F1 2400
14 TraesCS5D01G373800 chr7B 522881538 522882160 622 True 1057.0 1057 97.2710 1 623 1 chr7B.!!$R2 622
15 TraesCS5D01G373800 chr2A 774434647 774435250 603 False 412.0 412 79.7820 1 623 1 chr2A.!!$F2 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 952 0.034756 TAGTGATGCGTGCACCTGTT 59.965 50.0 12.15 0.0 36.95 3.16 F
967 1003 0.175760 CCATATAGGTGGCGGGATCG 59.824 60.0 0.00 0.0 39.81 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2535 3024 0.033090 GGACGACGACCTTGGACTTT 59.967 55.0 9.18 0.0 0.00 2.66 R
2614 3103 1.081892 CCGAAGAGCTTCACCACATG 58.918 55.0 10.51 0.0 39.46 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 89 1.611977 TGTCGACAACTACTCTGGTGG 59.388 52.381 17.62 0.00 0.00 4.61
85 91 0.389948 CGACAACTACTCTGGTGGGC 60.390 60.000 0.00 0.00 0.00 5.36
95 101 2.676121 TGGTGGGCCATGCTTTCG 60.676 61.111 10.70 0.00 40.46 3.46
97 103 1.377987 GGTGGGCCATGCTTTCGTA 60.378 57.895 10.70 0.00 34.09 3.43
206 212 6.968131 ATATAACAGTGTGTTGTGCAGTAG 57.032 37.500 0.00 0.00 41.30 2.57
624 656 2.271800 CGCGCCTTCAAGATCTAGTTT 58.728 47.619 0.00 0.00 0.00 2.66
625 657 2.673368 CGCGCCTTCAAGATCTAGTTTT 59.327 45.455 0.00 0.00 0.00 2.43
626 658 3.242123 CGCGCCTTCAAGATCTAGTTTTC 60.242 47.826 0.00 0.00 0.00 2.29
627 659 3.684788 GCGCCTTCAAGATCTAGTTTTCA 59.315 43.478 0.00 0.00 0.00 2.69
628 660 4.333926 GCGCCTTCAAGATCTAGTTTTCAT 59.666 41.667 0.00 0.00 0.00 2.57
629 661 5.728898 GCGCCTTCAAGATCTAGTTTTCATG 60.729 44.000 0.00 0.00 0.00 3.07
630 662 5.352569 CGCCTTCAAGATCTAGTTTTCATGT 59.647 40.000 0.00 0.00 0.00 3.21
631 663 6.535150 CGCCTTCAAGATCTAGTTTTCATGTA 59.465 38.462 0.00 0.00 0.00 2.29
632 664 7.064609 CGCCTTCAAGATCTAGTTTTCATGTAA 59.935 37.037 0.00 0.00 0.00 2.41
633 665 8.178313 GCCTTCAAGATCTAGTTTTCATGTAAC 58.822 37.037 0.00 0.00 0.00 2.50
634 666 8.669243 CCTTCAAGATCTAGTTTTCATGTAACC 58.331 37.037 0.00 0.00 0.00 2.85
635 667 9.442047 CTTCAAGATCTAGTTTTCATGTAACCT 57.558 33.333 0.00 0.00 0.00 3.50
636 668 9.436957 TTCAAGATCTAGTTTTCATGTAACCTC 57.563 33.333 0.00 3.84 0.00 3.85
637 669 7.759886 TCAAGATCTAGTTTTCATGTAACCTCG 59.240 37.037 0.00 0.00 0.00 4.63
638 670 7.406031 AGATCTAGTTTTCATGTAACCTCGA 57.594 36.000 0.00 0.00 0.00 4.04
639 671 7.484975 AGATCTAGTTTTCATGTAACCTCGAG 58.515 38.462 5.13 5.13 0.00 4.04
640 672 6.829229 TCTAGTTTTCATGTAACCTCGAGA 57.171 37.500 15.71 0.00 0.00 4.04
641 673 6.853720 TCTAGTTTTCATGTAACCTCGAGAG 58.146 40.000 15.71 6.69 0.00 3.20
642 674 5.723672 AGTTTTCATGTAACCTCGAGAGA 57.276 39.130 15.71 0.00 39.12 3.10
643 675 5.471257 AGTTTTCATGTAACCTCGAGAGAC 58.529 41.667 15.71 9.09 35.39 3.36
644 676 5.244178 AGTTTTCATGTAACCTCGAGAGACT 59.756 40.000 15.71 0.00 35.39 3.24
645 677 5.723672 TTTCATGTAACCTCGAGAGACTT 57.276 39.130 15.71 4.12 35.39 3.01
646 678 4.966965 TCATGTAACCTCGAGAGACTTC 57.033 45.455 15.71 0.00 35.39 3.01
647 679 4.332828 TCATGTAACCTCGAGAGACTTCA 58.667 43.478 15.71 5.79 35.39 3.02
648 680 4.950475 TCATGTAACCTCGAGAGACTTCAT 59.050 41.667 15.71 7.83 35.39 2.57
649 681 6.120220 TCATGTAACCTCGAGAGACTTCATA 58.880 40.000 15.71 0.00 35.39 2.15
650 682 6.773200 TCATGTAACCTCGAGAGACTTCATAT 59.227 38.462 15.71 0.00 35.39 1.78
651 683 7.937394 TCATGTAACCTCGAGAGACTTCATATA 59.063 37.037 15.71 1.00 35.39 0.86
652 684 8.568794 CATGTAACCTCGAGAGACTTCATATAA 58.431 37.037 15.71 0.00 35.39 0.98
653 685 7.928103 TGTAACCTCGAGAGACTTCATATAAC 58.072 38.462 15.71 0.00 35.39 1.89
654 686 7.774157 TGTAACCTCGAGAGACTTCATATAACT 59.226 37.037 15.71 0.00 35.39 2.24
655 687 6.870971 ACCTCGAGAGACTTCATATAACTC 57.129 41.667 15.71 0.00 35.39 3.01
656 688 5.467399 ACCTCGAGAGACTTCATATAACTCG 59.533 44.000 15.71 0.00 44.20 4.18
657 689 5.467399 CCTCGAGAGACTTCATATAACTCGT 59.533 44.000 15.71 0.00 43.60 4.18
658 690 6.017770 CCTCGAGAGACTTCATATAACTCGTT 60.018 42.308 15.71 0.00 43.60 3.85
659 691 6.716438 TCGAGAGACTTCATATAACTCGTTG 58.284 40.000 0.00 0.00 43.60 4.10
660 692 5.910166 CGAGAGACTTCATATAACTCGTTGG 59.090 44.000 0.00 0.00 40.11 3.77
661 693 6.238402 CGAGAGACTTCATATAACTCGTTGGA 60.238 42.308 0.00 0.00 40.11 3.53
662 694 6.797454 AGAGACTTCATATAACTCGTTGGAC 58.203 40.000 0.00 0.00 33.53 4.02
663 695 6.377429 AGAGACTTCATATAACTCGTTGGACA 59.623 38.462 0.00 0.00 33.53 4.02
664 696 6.331061 AGACTTCATATAACTCGTTGGACAC 58.669 40.000 0.00 0.00 0.00 3.67
677 709 3.650139 GTTGGACACGAACACATCTACT 58.350 45.455 0.00 0.00 0.00 2.57
678 710 3.570926 TGGACACGAACACATCTACTC 57.429 47.619 0.00 0.00 0.00 2.59
679 711 2.230508 TGGACACGAACACATCTACTCC 59.769 50.000 0.00 0.00 0.00 3.85
680 712 2.416972 GGACACGAACACATCTACTCCC 60.417 54.545 0.00 0.00 0.00 4.30
681 713 2.492484 GACACGAACACATCTACTCCCT 59.508 50.000 0.00 0.00 0.00 4.20
682 714 2.897969 ACACGAACACATCTACTCCCTT 59.102 45.455 0.00 0.00 0.00 3.95
683 715 3.323979 ACACGAACACATCTACTCCCTTT 59.676 43.478 0.00 0.00 0.00 3.11
684 716 3.679980 CACGAACACATCTACTCCCTTTG 59.320 47.826 0.00 0.00 0.00 2.77
685 717 3.323979 ACGAACACATCTACTCCCTTTGT 59.676 43.478 0.00 0.00 0.00 2.83
686 718 4.202326 ACGAACACATCTACTCCCTTTGTT 60.202 41.667 0.00 0.00 0.00 2.83
687 719 4.389077 CGAACACATCTACTCCCTTTGTTC 59.611 45.833 0.00 0.00 38.54 3.18
688 720 4.974645 ACACATCTACTCCCTTTGTTCA 57.025 40.909 0.00 0.00 0.00 3.18
689 721 4.642429 ACACATCTACTCCCTTTGTTCAC 58.358 43.478 0.00 0.00 0.00 3.18
690 722 4.102524 ACACATCTACTCCCTTTGTTCACA 59.897 41.667 0.00 0.00 0.00 3.58
691 723 5.063204 CACATCTACTCCCTTTGTTCACAA 58.937 41.667 0.00 0.00 0.00 3.33
692 724 5.530915 CACATCTACTCCCTTTGTTCACAAA 59.469 40.000 5.05 5.05 42.90 2.83
693 725 6.207417 CACATCTACTCCCTTTGTTCACAAAT 59.793 38.462 5.59 0.00 43.92 2.32
694 726 7.390440 CACATCTACTCCCTTTGTTCACAAATA 59.610 37.037 5.59 0.00 43.92 1.40
695 727 8.109634 ACATCTACTCCCTTTGTTCACAAATAT 58.890 33.333 5.59 0.00 43.92 1.28
696 728 9.613428 CATCTACTCCCTTTGTTCACAAATATA 57.387 33.333 5.59 0.00 43.92 0.86
698 730 9.667107 TCTACTCCCTTTGTTCACAAATATAAG 57.333 33.333 5.59 4.72 43.92 1.73
699 731 9.667107 CTACTCCCTTTGTTCACAAATATAAGA 57.333 33.333 5.59 0.00 43.92 2.10
701 733 8.960591 ACTCCCTTTGTTCACAAATATAAGATG 58.039 33.333 5.59 0.00 43.92 2.90
702 734 8.877864 TCCCTTTGTTCACAAATATAAGATGT 57.122 30.769 5.59 0.00 43.92 3.06
703 735 9.308000 TCCCTTTGTTCACAAATATAAGATGTT 57.692 29.630 5.59 0.00 43.92 2.71
704 736 9.927668 CCCTTTGTTCACAAATATAAGATGTTT 57.072 29.630 5.59 0.00 43.92 2.83
770 802 9.745880 TGAACAAACACACTAAAACTTAAAACA 57.254 25.926 0.00 0.00 0.00 2.83
791 823 7.553881 AACATCTTATATTTGTGAACCGAGG 57.446 36.000 0.00 0.00 0.00 4.63
792 824 6.055588 ACATCTTATATTTGTGAACCGAGGG 58.944 40.000 0.00 0.00 0.00 4.30
793 825 5.943349 TCTTATATTTGTGAACCGAGGGA 57.057 39.130 0.00 0.00 0.00 4.20
794 826 5.914033 TCTTATATTTGTGAACCGAGGGAG 58.086 41.667 0.00 0.00 0.00 4.30
795 827 5.424252 TCTTATATTTGTGAACCGAGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
796 828 6.608405 TCTTATATTTGTGAACCGAGGGAGTA 59.392 38.462 0.00 0.00 0.00 2.59
797 829 2.825861 TTTGTGAACCGAGGGAGTAC 57.174 50.000 0.00 0.00 0.00 2.73
798 830 1.707106 TTGTGAACCGAGGGAGTACA 58.293 50.000 0.00 0.00 0.00 2.90
799 831 1.933021 TGTGAACCGAGGGAGTACAT 58.067 50.000 0.00 0.00 0.00 2.29
800 832 2.253610 TGTGAACCGAGGGAGTACATT 58.746 47.619 0.00 0.00 0.00 2.71
801 833 2.232941 TGTGAACCGAGGGAGTACATTC 59.767 50.000 0.00 0.00 0.00 2.67
802 834 2.496470 GTGAACCGAGGGAGTACATTCT 59.504 50.000 0.00 0.00 0.00 2.40
803 835 3.056035 GTGAACCGAGGGAGTACATTCTT 60.056 47.826 0.00 0.00 0.00 2.52
804 836 4.159135 GTGAACCGAGGGAGTACATTCTTA 59.841 45.833 0.00 0.00 0.00 2.10
805 837 4.960469 TGAACCGAGGGAGTACATTCTTAT 59.040 41.667 0.00 0.00 0.00 1.73
806 838 5.068723 TGAACCGAGGGAGTACATTCTTATC 59.931 44.000 0.00 0.00 0.00 1.75
807 839 4.805744 ACCGAGGGAGTACATTCTTATCT 58.194 43.478 0.00 0.00 0.00 1.98
808 840 5.209659 ACCGAGGGAGTACATTCTTATCTT 58.790 41.667 0.00 0.00 0.00 2.40
809 841 5.302313 ACCGAGGGAGTACATTCTTATCTTC 59.698 44.000 0.00 0.00 0.00 2.87
810 842 5.536916 CCGAGGGAGTACATTCTTATCTTCT 59.463 44.000 0.00 0.00 0.00 2.85
811 843 6.041069 CCGAGGGAGTACATTCTTATCTTCTT 59.959 42.308 0.00 0.00 0.00 2.52
812 844 7.230913 CCGAGGGAGTACATTCTTATCTTCTTA 59.769 40.741 0.00 0.00 0.00 2.10
813 845 8.630917 CGAGGGAGTACATTCTTATCTTCTTAA 58.369 37.037 0.00 0.00 0.00 1.85
843 875 6.822442 TGAAATACAACAGTACTGTCCTTGA 58.178 36.000 28.04 12.70 44.13 3.02
853 885 8.768501 ACAGTACTGTCCTTGAATGAGATATA 57.231 34.615 22.95 0.00 40.24 0.86
883 919 2.897326 TGCAAGTAGACAAGGCTAGTCA 59.103 45.455 0.00 0.00 38.46 3.41
892 928 2.061773 CAAGGCTAGTCAGTCAACGTG 58.938 52.381 0.00 0.00 0.00 4.49
901 937 4.299155 AGTCAGTCAACGTGTGAATAGTG 58.701 43.478 0.00 0.00 38.23 2.74
906 942 2.666022 TCAACGTGTGAATAGTGATGCG 59.334 45.455 0.00 0.00 31.51 4.73
915 951 0.250234 ATAGTGATGCGTGCACCTGT 59.750 50.000 12.15 0.00 36.95 4.00
916 952 0.034756 TAGTGATGCGTGCACCTGTT 59.965 50.000 12.15 0.00 36.95 3.16
917 953 0.819259 AGTGATGCGTGCACCTGTTT 60.819 50.000 12.15 0.00 36.95 2.83
929 965 3.305709 CCTGTTTGGTGAAGCGAGA 57.694 52.632 0.00 0.00 0.00 4.04
931 967 1.151668 CTGTTTGGTGAAGCGAGAGG 58.848 55.000 0.00 0.00 0.00 3.69
933 969 1.347707 TGTTTGGTGAAGCGAGAGGAT 59.652 47.619 0.00 0.00 0.00 3.24
934 970 2.565391 TGTTTGGTGAAGCGAGAGGATA 59.435 45.455 0.00 0.00 0.00 2.59
935 971 3.190874 GTTTGGTGAAGCGAGAGGATAG 58.809 50.000 0.00 0.00 0.00 2.08
936 972 2.437085 TGGTGAAGCGAGAGGATAGA 57.563 50.000 0.00 0.00 0.00 1.98
937 973 2.950781 TGGTGAAGCGAGAGGATAGAT 58.049 47.619 0.00 0.00 0.00 1.98
939 975 2.029470 GGTGAAGCGAGAGGATAGATGG 60.029 54.545 0.00 0.00 0.00 3.51
940 976 2.625790 GTGAAGCGAGAGGATAGATGGT 59.374 50.000 0.00 0.00 0.00 3.55
941 977 3.821600 GTGAAGCGAGAGGATAGATGGTA 59.178 47.826 0.00 0.00 0.00 3.25
943 979 3.799432 AGCGAGAGGATAGATGGTAGT 57.201 47.619 0.00 0.00 0.00 2.73
947 983 5.484644 AGCGAGAGGATAGATGGTAGTAGTA 59.515 44.000 0.00 0.00 0.00 1.82
948 984 5.581874 GCGAGAGGATAGATGGTAGTAGTAC 59.418 48.000 0.00 0.00 0.00 2.73
967 1003 0.175760 CCATATAGGTGGCGGGATCG 59.824 60.000 0.00 0.00 39.81 3.69
968 1004 0.175760 CATATAGGTGGCGGGATCGG 59.824 60.000 0.00 0.00 36.79 4.18
969 1005 0.252103 ATATAGGTGGCGGGATCGGT 60.252 55.000 0.00 0.00 36.79 4.69
973 1009 3.463585 GTGGCGGGATCGGTGGTA 61.464 66.667 0.00 0.00 36.79 3.25
974 1010 3.151710 TGGCGGGATCGGTGGTAG 61.152 66.667 0.00 0.00 36.79 3.18
975 1011 4.603946 GGCGGGATCGGTGGTAGC 62.604 72.222 0.00 0.00 36.79 3.58
976 1012 4.603946 GCGGGATCGGTGGTAGCC 62.604 72.222 0.00 0.00 36.79 3.93
977 1013 3.151710 CGGGATCGGTGGTAGCCA 61.152 66.667 0.00 0.00 0.00 4.75
978 1014 2.727392 CGGGATCGGTGGTAGCCAA 61.727 63.158 0.00 0.00 34.18 4.52
979 1015 1.153229 GGGATCGGTGGTAGCCAAC 60.153 63.158 0.00 0.00 37.98 3.77
980 1016 1.600107 GGATCGGTGGTAGCCAACA 59.400 57.895 3.98 0.00 42.24 3.33
984 1020 3.053896 GGTGGTAGCCAACACGCC 61.054 66.667 0.00 0.00 41.64 5.68
995 1031 0.739462 CAACACGCCCGCAGAAGATA 60.739 55.000 0.00 0.00 0.00 1.98
996 1032 0.460284 AACACGCCCGCAGAAGATAG 60.460 55.000 0.00 0.00 0.00 2.08
1003 1039 2.869636 GCCCGCAGAAGATAGAAGATGG 60.870 54.545 0.00 0.00 0.00 3.51
1004 1040 2.411904 CCGCAGAAGATAGAAGATGGC 58.588 52.381 0.00 0.00 0.00 4.40
1008 1044 3.679025 GCAGAAGATAGAAGATGGCGATG 59.321 47.826 0.00 0.00 0.00 3.84
1057 1093 2.683212 AGCTCTGCTTCTCGGCCT 60.683 61.111 0.00 0.00 33.89 5.19
1064 1100 3.764466 CTTCTCGGCCTCGGCAGT 61.764 66.667 10.51 0.00 44.11 4.40
1119 1167 4.143333 ATCTGCGCGGGCGTTAGT 62.143 61.111 20.22 0.93 44.10 2.24
1146 1194 2.202932 CCATTCGGCGTCAGGGAG 60.203 66.667 6.85 0.00 0.00 4.30
1265 1316 1.630126 ATCTCGCTGGCCAACTCCAT 61.630 55.000 7.01 0.00 35.22 3.41
1515 1569 2.732094 CCCGTCACCGACACGTTC 60.732 66.667 0.00 0.00 35.39 3.95
1886 2252 0.813610 TGCCTCAACGTCACCAACAG 60.814 55.000 0.00 0.00 0.00 3.16
2182 2634 0.179000 AGACAGGGATTGCATCGGTC 59.821 55.000 0.00 0.00 0.00 4.79
2266 2753 1.970114 CTGTGGTGCTGGCCTTCTG 60.970 63.158 3.32 0.00 0.00 3.02
2511 3000 3.369471 CGGTGTACAAAGGGATCATGTCT 60.369 47.826 0.00 0.00 0.00 3.41
2535 3024 1.281353 GCACGTTGTGGCGATCAAA 59.719 52.632 0.00 0.00 33.64 2.69
2601 3090 1.137086 GAGGTAGCAATCCTCTCGCAA 59.863 52.381 12.50 0.00 45.56 4.85
2614 3103 1.999735 TCTCGCAAATCAACCATCGAC 59.000 47.619 0.00 0.00 0.00 4.20
2616 3105 2.352651 CTCGCAAATCAACCATCGACAT 59.647 45.455 0.00 0.00 0.00 3.06
2844 3333 7.172875 CACAGGGATATCAAATCTCAGAACATC 59.827 40.741 4.83 0.00 0.00 3.06
2910 3400 1.143305 GAGGTGCATTCCGATCGATG 58.857 55.000 18.66 14.35 0.00 3.84
3110 3600 1.915614 ATTTCACTGCCTTGCTCGCG 61.916 55.000 0.00 0.00 0.00 5.87
3148 3638 4.154918 CAGTTTGTTAGATCCTCAGGTTGC 59.845 45.833 0.00 0.00 0.00 4.17
3286 3776 2.354821 GAGTACCCCATGAAAATGTCGC 59.645 50.000 0.00 0.00 0.00 5.19
3518 4013 5.862924 TGTATACAGCAAAGAAGACAAGC 57.137 39.130 0.08 0.00 0.00 4.01
3526 4021 4.699257 AGCAAAGAAGACAAGCAGGAATAG 59.301 41.667 0.00 0.00 0.00 1.73
3530 4025 5.017294 AGAAGACAAGCAGGAATAGTAGC 57.983 43.478 0.00 0.00 0.00 3.58
3532 4027 5.130145 AGAAGACAAGCAGGAATAGTAGCAT 59.870 40.000 0.00 0.00 0.00 3.79
3577 4073 8.986929 AAGAATAGGAAAGATAAGACCATTGG 57.013 34.615 0.00 0.00 0.00 3.16
3578 4074 8.337118 AGAATAGGAAAGATAAGACCATTGGA 57.663 34.615 10.37 0.00 0.00 3.53
3579 4075 8.953665 AGAATAGGAAAGATAAGACCATTGGAT 58.046 33.333 10.37 0.00 0.00 3.41
3580 4076 8.930846 AATAGGAAAGATAAGACCATTGGATG 57.069 34.615 10.37 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 89 4.798387 CAGTAAAATTACGAAAGCATGGCC 59.202 41.667 0.00 0.00 38.65 5.36
85 91 7.967854 TCAATCAGTAAAATTACGAAAGCATGG 59.032 33.333 0.00 0.00 38.65 3.66
97 103 9.917887 ATGATCTCCTTCTCAATCAGTAAAATT 57.082 29.630 0.00 0.00 32.09 1.82
206 212 9.553064 TTCATCTTCATAAAGAGGCTAAATCTC 57.447 33.333 0.00 0.00 44.53 2.75
624 656 4.765339 TGAAGTCTCTCGAGGTTACATGAA 59.235 41.667 13.56 0.00 0.00 2.57
625 657 4.332828 TGAAGTCTCTCGAGGTTACATGA 58.667 43.478 13.56 0.00 0.00 3.07
626 658 4.703645 TGAAGTCTCTCGAGGTTACATG 57.296 45.455 13.56 0.00 0.00 3.21
627 659 8.569641 GTTATATGAAGTCTCTCGAGGTTACAT 58.430 37.037 13.56 12.75 0.00 2.29
628 660 7.774157 AGTTATATGAAGTCTCTCGAGGTTACA 59.226 37.037 13.56 6.51 0.00 2.41
629 661 8.156994 AGTTATATGAAGTCTCTCGAGGTTAC 57.843 38.462 13.56 8.49 0.00 2.50
630 662 7.171167 CGAGTTATATGAAGTCTCTCGAGGTTA 59.829 40.741 13.56 0.00 43.53 2.85
631 663 6.017770 CGAGTTATATGAAGTCTCTCGAGGTT 60.018 42.308 13.56 1.20 43.53 3.50
632 664 5.467399 CGAGTTATATGAAGTCTCTCGAGGT 59.533 44.000 13.56 0.00 43.53 3.85
633 665 5.467399 ACGAGTTATATGAAGTCTCTCGAGG 59.533 44.000 13.56 3.44 43.53 4.63
634 666 6.533819 ACGAGTTATATGAAGTCTCTCGAG 57.466 41.667 5.93 5.93 43.53 4.04
635 667 6.238402 CCAACGAGTTATATGAAGTCTCTCGA 60.238 42.308 16.36 0.00 43.53 4.04
636 668 5.910166 CCAACGAGTTATATGAAGTCTCTCG 59.090 44.000 9.53 9.53 45.35 4.04
637 669 6.913673 GTCCAACGAGTTATATGAAGTCTCTC 59.086 42.308 0.00 0.00 0.00 3.20
638 670 6.377429 TGTCCAACGAGTTATATGAAGTCTCT 59.623 38.462 0.00 0.00 0.00 3.10
639 671 6.472808 GTGTCCAACGAGTTATATGAAGTCTC 59.527 42.308 0.00 0.00 0.00 3.36
640 672 6.331061 GTGTCCAACGAGTTATATGAAGTCT 58.669 40.000 0.00 0.00 0.00 3.24
641 673 6.570690 GTGTCCAACGAGTTATATGAAGTC 57.429 41.667 0.00 0.00 0.00 3.01
656 688 3.650139 AGTAGATGTGTTCGTGTCCAAC 58.350 45.455 0.00 0.00 0.00 3.77
657 689 3.305813 GGAGTAGATGTGTTCGTGTCCAA 60.306 47.826 0.00 0.00 0.00 3.53
658 690 2.230508 GGAGTAGATGTGTTCGTGTCCA 59.769 50.000 0.00 0.00 0.00 4.02
659 691 2.416972 GGGAGTAGATGTGTTCGTGTCC 60.417 54.545 0.00 0.00 0.00 4.02
660 692 2.492484 AGGGAGTAGATGTGTTCGTGTC 59.508 50.000 0.00 0.00 0.00 3.67
661 693 2.526432 AGGGAGTAGATGTGTTCGTGT 58.474 47.619 0.00 0.00 0.00 4.49
662 694 3.594603 AAGGGAGTAGATGTGTTCGTG 57.405 47.619 0.00 0.00 0.00 4.35
663 695 3.323979 ACAAAGGGAGTAGATGTGTTCGT 59.676 43.478 0.00 0.00 0.00 3.85
664 696 3.926616 ACAAAGGGAGTAGATGTGTTCG 58.073 45.455 0.00 0.00 0.00 3.95
665 697 5.179555 GTGAACAAAGGGAGTAGATGTGTTC 59.820 44.000 6.67 6.67 42.23 3.18
666 698 5.063880 GTGAACAAAGGGAGTAGATGTGTT 58.936 41.667 0.00 0.00 0.00 3.32
667 699 4.102524 TGTGAACAAAGGGAGTAGATGTGT 59.897 41.667 0.00 0.00 0.00 3.72
668 700 4.641396 TGTGAACAAAGGGAGTAGATGTG 58.359 43.478 0.00 0.00 0.00 3.21
669 701 4.974645 TGTGAACAAAGGGAGTAGATGT 57.025 40.909 0.00 0.00 0.00 3.06
744 776 9.745880 TGTTTTAAGTTTTAGTGTGTTTGTTCA 57.254 25.926 0.00 0.00 0.00 3.18
765 797 8.458843 CCTCGGTTCACAAATATAAGATGTTTT 58.541 33.333 0.00 0.00 0.00 2.43
766 798 7.067008 CCCTCGGTTCACAAATATAAGATGTTT 59.933 37.037 0.00 0.00 0.00 2.83
767 799 6.542370 CCCTCGGTTCACAAATATAAGATGTT 59.458 38.462 0.00 0.00 0.00 2.71
768 800 6.055588 CCCTCGGTTCACAAATATAAGATGT 58.944 40.000 0.00 0.00 0.00 3.06
769 801 6.288294 TCCCTCGGTTCACAAATATAAGATG 58.712 40.000 0.00 0.00 0.00 2.90
770 802 6.099845 ACTCCCTCGGTTCACAAATATAAGAT 59.900 38.462 0.00 0.00 0.00 2.40
771 803 5.424252 ACTCCCTCGGTTCACAAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
772 804 5.671493 ACTCCCTCGGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
773 805 5.687166 ACTCCCTCGGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
774 806 5.657745 TGTACTCCCTCGGTTCACAAATATA 59.342 40.000 0.00 0.00 0.00 0.86
775 807 4.468510 TGTACTCCCTCGGTTCACAAATAT 59.531 41.667 0.00 0.00 0.00 1.28
776 808 3.833650 TGTACTCCCTCGGTTCACAAATA 59.166 43.478 0.00 0.00 0.00 1.40
777 809 2.635915 TGTACTCCCTCGGTTCACAAAT 59.364 45.455 0.00 0.00 0.00 2.32
778 810 2.040939 TGTACTCCCTCGGTTCACAAA 58.959 47.619 0.00 0.00 0.00 2.83
779 811 1.707106 TGTACTCCCTCGGTTCACAA 58.293 50.000 0.00 0.00 0.00 3.33
780 812 1.933021 ATGTACTCCCTCGGTTCACA 58.067 50.000 0.00 0.00 0.00 3.58
781 813 2.496470 AGAATGTACTCCCTCGGTTCAC 59.504 50.000 0.00 0.00 0.00 3.18
782 814 2.816411 AGAATGTACTCCCTCGGTTCA 58.184 47.619 0.00 0.00 0.00 3.18
783 815 3.889520 AAGAATGTACTCCCTCGGTTC 57.110 47.619 0.00 0.00 0.00 3.62
784 816 5.209659 AGATAAGAATGTACTCCCTCGGTT 58.790 41.667 0.00 0.00 0.00 4.44
785 817 4.805744 AGATAAGAATGTACTCCCTCGGT 58.194 43.478 0.00 0.00 0.00 4.69
786 818 5.536916 AGAAGATAAGAATGTACTCCCTCGG 59.463 44.000 0.00 0.00 0.00 4.63
787 819 6.642707 AGAAGATAAGAATGTACTCCCTCG 57.357 41.667 0.00 0.00 0.00 4.63
813 845 9.162764 GGACAGTACTGTTGTATTTCATTGTAT 57.837 33.333 28.49 0.02 45.05 2.29
814 846 8.372459 AGGACAGTACTGTTGTATTTCATTGTA 58.628 33.333 28.49 0.00 45.05 2.41
815 847 7.224297 AGGACAGTACTGTTGTATTTCATTGT 58.776 34.615 28.49 2.05 45.05 2.71
816 848 7.672983 AGGACAGTACTGTTGTATTTCATTG 57.327 36.000 28.49 0.00 45.05 2.82
817 849 7.936847 TCAAGGACAGTACTGTTGTATTTCATT 59.063 33.333 28.49 14.92 45.05 2.57
818 850 7.450074 TCAAGGACAGTACTGTTGTATTTCAT 58.550 34.615 28.49 9.74 45.05 2.57
819 851 6.822442 TCAAGGACAGTACTGTTGTATTTCA 58.178 36.000 28.49 4.69 45.05 2.69
820 852 7.724305 TTCAAGGACAGTACTGTTGTATTTC 57.276 36.000 28.49 14.08 45.05 2.17
821 853 7.936847 TCATTCAAGGACAGTACTGTTGTATTT 59.063 33.333 28.49 15.34 45.05 1.40
822 854 7.450074 TCATTCAAGGACAGTACTGTTGTATT 58.550 34.615 28.49 17.27 45.05 1.89
823 855 7.004555 TCATTCAAGGACAGTACTGTTGTAT 57.995 36.000 28.49 18.34 45.05 2.29
824 856 6.266786 TCTCATTCAAGGACAGTACTGTTGTA 59.733 38.462 28.49 17.00 45.05 2.41
825 857 5.070446 TCTCATTCAAGGACAGTACTGTTGT 59.930 40.000 28.49 16.35 45.05 3.32
826 858 5.541845 TCTCATTCAAGGACAGTACTGTTG 58.458 41.667 28.49 22.02 45.05 3.33
827 859 5.808366 TCTCATTCAAGGACAGTACTGTT 57.192 39.130 28.49 12.12 45.05 3.16
853 885 6.660949 AGCCTTGTCTACTTGCAAAAGAATAT 59.339 34.615 11.63 0.00 0.00 1.28
855 887 4.829492 AGCCTTGTCTACTTGCAAAAGAAT 59.171 37.500 11.63 0.00 0.00 2.40
856 888 4.207165 AGCCTTGTCTACTTGCAAAAGAA 58.793 39.130 11.63 0.00 0.00 2.52
857 889 3.820557 AGCCTTGTCTACTTGCAAAAGA 58.179 40.909 0.00 3.71 0.00 2.52
858 890 4.757149 ACTAGCCTTGTCTACTTGCAAAAG 59.243 41.667 0.00 1.02 0.00 2.27
859 891 4.714632 ACTAGCCTTGTCTACTTGCAAAA 58.285 39.130 0.00 0.00 0.00 2.44
860 892 4.202315 TGACTAGCCTTGTCTACTTGCAAA 60.202 41.667 7.77 0.00 35.63 3.68
872 904 2.061773 CACGTTGACTGACTAGCCTTG 58.938 52.381 0.00 0.00 0.00 3.61
875 907 1.000607 TCACACGTTGACTGACTAGCC 60.001 52.381 0.00 0.00 0.00 3.93
883 919 3.679980 GCATCACTATTCACACGTTGACT 59.320 43.478 0.00 0.00 32.26 3.41
892 928 1.062587 GGTGCACGCATCACTATTCAC 59.937 52.381 11.45 0.00 34.97 3.18
901 937 1.081242 CCAAACAGGTGCACGCATC 60.081 57.895 11.45 0.00 0.00 3.91
915 951 3.096852 TCTATCCTCTCGCTTCACCAAA 58.903 45.455 0.00 0.00 0.00 3.28
916 952 2.735151 TCTATCCTCTCGCTTCACCAA 58.265 47.619 0.00 0.00 0.00 3.67
917 953 2.437085 TCTATCCTCTCGCTTCACCA 57.563 50.000 0.00 0.00 0.00 4.17
920 956 2.950781 ACCATCTATCCTCTCGCTTCA 58.049 47.619 0.00 0.00 0.00 3.02
921 957 4.076394 ACTACCATCTATCCTCTCGCTTC 58.924 47.826 0.00 0.00 0.00 3.86
922 958 4.107127 ACTACCATCTATCCTCTCGCTT 57.893 45.455 0.00 0.00 0.00 4.68
923 959 3.799432 ACTACCATCTATCCTCTCGCT 57.201 47.619 0.00 0.00 0.00 4.93
924 960 4.581868 ACTACTACCATCTATCCTCTCGC 58.418 47.826 0.00 0.00 0.00 5.03
925 961 6.108015 GGTACTACTACCATCTATCCTCTCG 58.892 48.000 0.00 0.00 42.16 4.04
926 962 7.018487 TGGTACTACTACCATCTATCCTCTC 57.982 44.000 0.00 0.00 46.53 3.20
948 984 0.175760 CGATCCCGCCACCTATATGG 59.824 60.000 0.00 0.00 43.26 2.74
949 985 0.175760 CCGATCCCGCCACCTATATG 59.824 60.000 0.00 0.00 0.00 1.78
950 986 0.252103 ACCGATCCCGCCACCTATAT 60.252 55.000 0.00 0.00 0.00 0.86
951 987 1.154454 ACCGATCCCGCCACCTATA 59.846 57.895 0.00 0.00 0.00 1.31
952 988 2.122989 ACCGATCCCGCCACCTAT 60.123 61.111 0.00 0.00 0.00 2.57
953 989 3.151710 CACCGATCCCGCCACCTA 61.152 66.667 0.00 0.00 0.00 3.08
956 992 3.441011 CTACCACCGATCCCGCCAC 62.441 68.421 0.00 0.00 0.00 5.01
957 993 3.151710 CTACCACCGATCCCGCCA 61.152 66.667 0.00 0.00 0.00 5.69
959 995 4.603946 GGCTACCACCGATCCCGC 62.604 72.222 0.00 0.00 0.00 6.13
963 999 1.082117 CGTGTTGGCTACCACCGATC 61.082 60.000 0.00 0.00 30.78 3.69
964 1000 1.079405 CGTGTTGGCTACCACCGAT 60.079 57.895 0.00 0.00 30.78 4.18
966 1002 3.419759 GCGTGTTGGCTACCACCG 61.420 66.667 0.00 0.00 30.78 4.94
967 1003 3.053896 GGCGTGTTGGCTACCACC 61.054 66.667 0.00 0.00 40.72 4.61
968 1004 3.053896 GGGCGTGTTGGCTACCAC 61.054 66.667 0.00 0.00 44.11 4.16
969 1005 4.690719 CGGGCGTGTTGGCTACCA 62.691 66.667 0.00 0.00 44.11 3.25
975 1011 3.726517 CTTCTGCGGGCGTGTTGG 61.727 66.667 0.00 0.00 0.00 3.77
976 1012 0.739462 TATCTTCTGCGGGCGTGTTG 60.739 55.000 0.00 0.00 0.00 3.33
977 1013 0.460284 CTATCTTCTGCGGGCGTGTT 60.460 55.000 0.00 0.00 0.00 3.32
978 1014 1.141881 CTATCTTCTGCGGGCGTGT 59.858 57.895 0.00 0.00 0.00 4.49
979 1015 0.179111 TTCTATCTTCTGCGGGCGTG 60.179 55.000 0.00 0.00 0.00 5.34
980 1016 0.103208 CTTCTATCTTCTGCGGGCGT 59.897 55.000 0.00 0.00 0.00 5.68
984 1020 2.411904 GCCATCTTCTATCTTCTGCGG 58.588 52.381 0.00 0.00 0.00 5.69
1048 1084 4.069232 CACTGCCGAGGCCGAGAA 62.069 66.667 12.05 0.00 41.09 2.87
1057 1093 3.695606 GACCTGAGCCACTGCCGA 61.696 66.667 0.00 0.00 38.69 5.54
1062 1098 3.314331 CCGGTGACCTGAGCCACT 61.314 66.667 0.00 0.00 33.99 4.00
1064 1100 2.997315 CTCCGGTGACCTGAGCCA 60.997 66.667 10.15 0.00 28.87 4.75
1110 1158 2.096442 GTACGGCACACTAACGCCC 61.096 63.158 0.00 0.00 46.04 6.13
1116 1164 0.173935 CGAATGGGTACGGCACACTA 59.826 55.000 0.00 0.00 30.45 2.74
1119 1167 2.266372 CCGAATGGGTACGGCACA 59.734 61.111 0.00 0.00 42.55 4.57
1138 1186 0.910088 AAGTAGCACCCCTCCCTGAC 60.910 60.000 0.00 0.00 0.00 3.51
1241 1292 0.809241 GTTGGCCAGCGAGATCTCAG 60.809 60.000 22.31 15.23 0.00 3.35
1242 1293 1.219124 GTTGGCCAGCGAGATCTCA 59.781 57.895 22.31 0.00 0.00 3.27
1265 1316 4.306967 TGTCCATGACGCGCACCA 62.307 61.111 5.73 4.40 34.95 4.17
1515 1569 2.818132 GGGGAGATCGTGCTCAGG 59.182 66.667 8.96 0.00 36.62 3.86
1557 1620 2.573869 GTCTCGCAGCAGCCTACA 59.426 61.111 0.00 0.00 37.52 2.74
1864 2230 0.179032 TTGGTGACGTTGAGGCATGT 60.179 50.000 0.00 0.00 41.88 3.21
1886 2252 2.582498 CGTAGCCAGTGCGGTAGC 60.582 66.667 0.00 0.00 44.33 3.58
1984 2367 1.304381 ACATGAACTTGCCGGGCAT 60.304 52.632 24.49 8.15 38.76 4.40
2182 2634 1.081892 CGTCATGGTTCAGAGCAAGG 58.918 55.000 0.00 0.00 36.76 3.61
2266 2753 0.977395 AGACACCAAGTACCAGGAGC 59.023 55.000 8.10 0.00 0.00 4.70
2476 2963 4.720902 CACCGTGCATGCCCTCCA 62.721 66.667 16.68 0.00 0.00 3.86
2511 3000 2.899838 GCCACAACGTGCAGGTCA 60.900 61.111 13.21 0.00 31.34 4.02
2535 3024 0.033090 GGACGACGACCTTGGACTTT 59.967 55.000 9.18 0.00 0.00 2.66
2614 3103 1.081892 CCGAAGAGCTTCACCACATG 58.918 55.000 10.51 0.00 39.46 3.21
2616 3105 1.371183 CCCGAAGAGCTTCACCACA 59.629 57.895 10.51 0.00 39.46 4.17
2844 3333 4.769488 TGCTAGAGAGTGCCATCTAATAGG 59.231 45.833 0.00 0.00 0.00 2.57
2910 3400 1.949257 CAGTTGCGTCCCCTGTTTC 59.051 57.895 0.00 0.00 0.00 2.78
3148 3638 1.094073 CATCTTGCCTCCTTCCTGCG 61.094 60.000 0.00 0.00 0.00 5.18
3286 3776 2.998670 GGTGCATCCATATCAGACATCG 59.001 50.000 0.00 0.00 35.97 3.84
3551 4047 9.413734 CCAATGGTCTTATCTTTCCTATTCTTT 57.586 33.333 0.00 0.00 0.00 2.52
3554 4050 9.007901 CATCCAATGGTCTTATCTTTCCTATTC 57.992 37.037 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.