Multiple sequence alignment - TraesCS5D01G373400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G373400 chr5D 100.000 4383 0 0 1 4383 446879019 446874637 0.000000e+00 8094.0
1 TraesCS5D01G373400 chr5D 84.011 1057 158 8 2397 3450 447388098 447387050 0.000000e+00 1005.0
2 TraesCS5D01G373400 chr5D 81.174 1227 205 21 2399 3615 447304753 447303543 0.000000e+00 963.0
3 TraesCS5D01G373400 chr5D 87.352 253 23 7 1763 2009 446877025 446876776 9.280000e-72 281.0
4 TraesCS5D01G373400 chr5D 87.352 253 23 7 1995 2244 446877257 446877011 9.280000e-72 281.0
5 TraesCS5D01G373400 chr5B 91.985 1647 114 12 2055 3683 545818423 545820069 0.000000e+00 2294.0
6 TraesCS5D01G373400 chr5B 92.823 1031 41 8 1 1007 545816400 545817421 0.000000e+00 1463.0
7 TraesCS5D01G373400 chr5B 92.400 829 51 6 1007 1823 545817562 545818390 0.000000e+00 1171.0
8 TraesCS5D01G373400 chr5B 91.770 486 39 1 3675 4159 545820264 545820749 0.000000e+00 675.0
9 TraesCS5D01G373400 chr5B 89.175 194 14 3 1823 2009 545818432 545818625 7.330000e-58 235.0
10 TraesCS5D01G373400 chr5B 88.764 178 18 2 4172 4347 545820730 545820907 2.650000e-52 217.0
11 TraesCS5D01G373400 chr5B 78.652 178 26 5 1021 1189 545278475 545278649 1.670000e-19 108.0
12 TraesCS5D01G373400 chr6B 84.886 1449 196 16 2393 3828 5838144 5839582 0.000000e+00 1441.0
13 TraesCS5D01G373400 chr6B 100.000 28 0 0 1322 1349 36773450 36773423 8.000000e-03 52.8
14 TraesCS5D01G373400 chr6D 82.399 1159 185 13 2343 3492 21078508 21079656 0.000000e+00 992.0
15 TraesCS5D01G373400 chr4A 81.326 1237 214 11 2396 3625 603036959 603038185 0.000000e+00 989.0
16 TraesCS5D01G373400 chr4D 81.195 1239 221 7 2392 3625 1667078 1668309 0.000000e+00 987.0
17 TraesCS5D01G373400 chr4D 82.096 1078 183 7 2393 3468 2999497 3000566 0.000000e+00 913.0
18 TraesCS5D01G373400 chr3D 80.259 1236 223 14 2396 3623 567742547 567741325 0.000000e+00 911.0
19 TraesCS5D01G373400 chr1D 100.000 30 0 0 1322 1351 431968681 431968652 6.120000e-04 56.5
20 TraesCS5D01G373400 chr1B 100.000 30 0 0 1322 1351 583405605 583405576 6.120000e-04 56.5
21 TraesCS5D01G373400 chr1A 100.000 30 0 0 1322 1351 530523527 530523498 6.120000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G373400 chr5D 446874637 446879019 4382 True 2885.333333 8094 91.568000 1 4383 3 chr5D.!!$R3 4382
1 TraesCS5D01G373400 chr5D 447387050 447388098 1048 True 1005.000000 1005 84.011000 2397 3450 1 chr5D.!!$R2 1053
2 TraesCS5D01G373400 chr5D 447303543 447304753 1210 True 963.000000 963 81.174000 2399 3615 1 chr5D.!!$R1 1216
3 TraesCS5D01G373400 chr5B 545816400 545820907 4507 False 1009.166667 2294 91.152833 1 4347 6 chr5B.!!$F2 4346
4 TraesCS5D01G373400 chr6B 5838144 5839582 1438 False 1441.000000 1441 84.886000 2393 3828 1 chr6B.!!$F1 1435
5 TraesCS5D01G373400 chr6D 21078508 21079656 1148 False 992.000000 992 82.399000 2343 3492 1 chr6D.!!$F1 1149
6 TraesCS5D01G373400 chr4A 603036959 603038185 1226 False 989.000000 989 81.326000 2396 3625 1 chr4A.!!$F1 1229
7 TraesCS5D01G373400 chr4D 1667078 1668309 1231 False 987.000000 987 81.195000 2392 3625 1 chr4D.!!$F1 1233
8 TraesCS5D01G373400 chr4D 2999497 3000566 1069 False 913.000000 913 82.096000 2393 3468 1 chr4D.!!$F2 1075
9 TraesCS5D01G373400 chr3D 567741325 567742547 1222 True 911.000000 911 80.259000 2396 3623 1 chr3D.!!$R1 1227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
862 883 0.032952 TTCGTTCACTAGCACCGCTT 59.967 50.0 0.00 0.0 40.44 4.68 F
1358 1530 0.034896 TCCTTCTGCTCCACGGAAAC 59.965 55.0 0.00 0.0 43.15 2.78 F
1963 2190 0.035725 TCGGAGACTGCGAGGAACTA 60.036 55.0 15.63 0.0 41.55 2.24 F
1964 2191 0.099082 CGGAGACTGCGAGGAACTAC 59.901 60.0 11.36 0.0 41.55 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 2171 0.035725 TAGTTCCTCGCAGTCTCCGA 60.036 55.000 0.00 0.0 0.00 4.55 R
2596 2829 0.328258 TGGCCTTTTGTAGCTCCTCC 59.672 55.000 3.32 0.0 0.00 4.30 R
3148 3384 1.226491 CGTTAGGCGTCCCGTGTAG 60.226 63.158 0.00 0.0 35.76 2.74 R
3949 4399 3.701205 TCATTGCTCTTTAGGCTGTCA 57.299 42.857 0.00 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 8.144478 TGTGATACATTAACAATAGAGCTCTCC 58.856 37.037 22.17 0.00 0.00 3.71
123 124 4.847757 CGCATATCATTTTTATCACCGCAG 59.152 41.667 0.00 0.00 0.00 5.18
231 232 6.200475 GTCTATTTTTGCTACCCGATGACTAC 59.800 42.308 0.00 0.00 0.00 2.73
245 246 5.163591 CCGATGACTACAAAAATTAACCCCC 60.164 44.000 0.00 0.00 0.00 5.40
272 273 1.178276 TGTGTTTGACCCCAACACAC 58.822 50.000 13.28 12.06 40.51 3.82
342 343 3.623060 AGCAATGCTATTTCTACACACCG 59.377 43.478 5.69 0.00 36.99 4.94
346 347 3.331150 TGCTATTTCTACACACCGGTTG 58.669 45.455 2.97 9.91 0.00 3.77
361 362 6.033725 CACACCGGTTGTACAAAAAGTTTTAC 59.966 38.462 10.51 0.00 35.67 2.01
411 412 7.453141 AGCTAAAAATGAGGGGAGTAGTTAT 57.547 36.000 0.00 0.00 0.00 1.89
438 439 6.100404 TGGGAACACACTAGTACGTAATTT 57.900 37.500 0.00 0.00 33.40 1.82
538 539 5.862924 TTCATTAGCAGAGAAAAAGTCCG 57.137 39.130 0.00 0.00 0.00 4.79
576 577 5.413833 TGCCTCTTTCTCAATTTCTCATCAC 59.586 40.000 0.00 0.00 0.00 3.06
578 579 6.072286 GCCTCTTTCTCAATTTCTCATCACAA 60.072 38.462 0.00 0.00 0.00 3.33
591 592 2.993220 TCATCACAAGTCGGAAATGACG 59.007 45.455 0.00 0.00 43.70 4.35
605 606 1.649664 ATGACGCAGCAGAACTCATC 58.350 50.000 0.00 0.00 0.00 2.92
685 686 6.244552 ACTTGATGATGGACACATACAGAT 57.755 37.500 0.00 0.00 37.47 2.90
728 743 9.691362 GGTTAAAGAAATCACTAATTGCTTGAA 57.309 29.630 0.00 0.00 41.65 2.69
796 817 3.287222 TGTTTGAGGGAGTGGAACAAAG 58.713 45.455 0.00 0.00 44.16 2.77
797 818 3.288092 GTTTGAGGGAGTGGAACAAAGT 58.712 45.455 0.00 0.00 44.16 2.66
798 819 3.662759 TTGAGGGAGTGGAACAAAGTT 57.337 42.857 0.00 0.00 44.16 2.66
801 822 5.319043 TGAGGGAGTGGAACAAAGTTATT 57.681 39.130 0.00 0.00 44.16 1.40
857 878 4.855937 GGTACTAGTTTCGTTCACTAGCAC 59.144 45.833 0.00 12.50 45.35 4.40
862 883 0.032952 TTCGTTCACTAGCACCGCTT 59.967 50.000 0.00 0.00 40.44 4.68
863 884 0.032952 TCGTTCACTAGCACCGCTTT 59.967 50.000 0.00 0.00 40.44 3.51
864 885 0.865769 CGTTCACTAGCACCGCTTTT 59.134 50.000 0.00 0.00 40.44 2.27
917 938 6.351317 TCCCCGGAGTACTATATATTGGAT 57.649 41.667 0.73 0.00 0.00 3.41
935 956 4.199310 TGGATACACAGAAATTGGCTAGC 58.801 43.478 6.04 6.04 46.17 3.42
971 996 3.881220 AGCTAGAGGTACACAGAGAGAC 58.119 50.000 0.00 0.00 0.00 3.36
980 1005 2.509569 ACACAGAGAGACACAGTCGAT 58.490 47.619 0.00 0.00 37.67 3.59
1003 1028 2.549064 TCTCCATATTGCCGTCATGG 57.451 50.000 0.00 0.00 40.55 3.66
1047 1213 2.035442 GCCCGAGTTCAAGCTCACC 61.035 63.158 0.00 0.00 35.33 4.02
1121 1287 1.021390 GGTGCATTGGAGGTCGTCAG 61.021 60.000 0.00 0.00 0.00 3.51
1127 1293 0.532573 TTGGAGGTCGTCAGCATCTC 59.467 55.000 0.00 0.00 0.00 2.75
1129 1295 1.587613 GAGGTCGTCAGCATCTCGC 60.588 63.158 0.00 0.00 42.91 5.03
1130 1296 2.583593 GGTCGTCAGCATCTCGCC 60.584 66.667 0.00 0.00 44.04 5.54
1179 1345 1.153978 CGGTGTGCATGCCATGAAC 60.154 57.895 16.68 8.99 39.38 3.18
1236 1402 2.749839 GCCGGCTTGCCATACACA 60.750 61.111 22.15 0.00 0.00 3.72
1284 1450 0.329261 TCCTCTTGGGGTGCAATCTG 59.671 55.000 0.00 0.00 35.33 2.90
1358 1530 0.034896 TCCTTCTGCTCCACGGAAAC 59.965 55.000 0.00 0.00 43.15 2.78
1374 1546 2.527100 GAAACGATGGAGTGGTACGAG 58.473 52.381 0.00 0.00 0.00 4.18
1381 1553 1.754803 TGGAGTGGTACGAGGCTTATG 59.245 52.381 0.00 0.00 0.00 1.90
1388 1560 1.852895 GTACGAGGCTTATGACAAGCG 59.147 52.381 3.14 0.00 43.89 4.68
1464 1639 0.533032 GAGTGGAGCTTAGACGGCTT 59.467 55.000 0.00 0.00 40.40 4.35
1506 1684 3.064324 ATGCAAGCCGAAGTGCCC 61.064 61.111 0.00 0.00 40.14 5.36
1540 1718 2.035442 GCTGAGACGGGCTGGTTTC 61.035 63.158 0.00 0.00 0.00 2.78
1543 1721 1.070786 GAGACGGGCTGGTTTCACA 59.929 57.895 0.00 0.00 0.00 3.58
1544 1722 0.951040 GAGACGGGCTGGTTTCACAG 60.951 60.000 0.00 0.00 41.41 3.66
1548 1726 1.384191 GGGCTGGTTTCACAGGGAT 59.616 57.895 0.00 0.00 38.90 3.85
1558 1736 2.566833 TCACAGGGATTTGTCCACAG 57.433 50.000 0.00 0.00 0.00 3.66
1565 1743 3.054802 AGGGATTTGTCCACAGATCTGAC 60.055 47.826 29.27 16.85 37.55 3.51
1566 1744 3.307691 GGGATTTGTCCACAGATCTGACA 60.308 47.826 29.27 19.24 37.55 3.58
1574 1752 2.613977 CCACAGATCTGACAGACCCAAC 60.614 54.545 29.27 0.00 0.00 3.77
1599 1777 3.658398 CCAGTGGCAGAAGACCATT 57.342 52.632 0.00 0.00 39.95 3.16
1612 1790 3.411517 CCATTCTGCGGGTCCCCT 61.412 66.667 1.00 0.00 0.00 4.79
1621 1799 1.910580 GCGGGTCCCCTTGATTCTCA 61.911 60.000 1.00 0.00 0.00 3.27
1665 1843 4.261801 CGTCCCATGATATGAAATACCCC 58.738 47.826 0.00 0.00 0.00 4.95
1683 1861 3.005539 GGTGAGGCAGCCTGGAGA 61.006 66.667 22.26 0.00 31.76 3.71
1707 1885 1.785041 GCAAGAGCACCAACAGCGAA 61.785 55.000 0.00 0.00 41.58 4.70
1807 1985 3.034030 GCGGATGCCAAGGTATGC 58.966 61.111 0.00 0.00 33.98 3.14
1840 2060 6.960992 CGAATCATGTCGTTGTTGTTCATAAT 59.039 34.615 0.00 0.00 36.26 1.28
1841 2061 7.045419 CGAATCATGTCGTTGTTGTTCATAATG 60.045 37.037 0.00 0.00 36.26 1.90
1846 2066 5.699001 TGTCGTTGTTGTTCATAATGCTACT 59.301 36.000 0.00 0.00 0.00 2.57
1855 2075 8.850452 GTTGTTCATAATGCTACTTTTTGCTAC 58.150 33.333 0.00 0.00 0.00 3.58
1933 2160 7.275183 TCAAAGAGTGTGATCAGAAAGAAGAA 58.725 34.615 0.00 0.00 0.00 2.52
1934 2161 7.225538 TCAAAGAGTGTGATCAGAAAGAAGAAC 59.774 37.037 0.00 0.00 0.00 3.01
1935 2162 6.166984 AGAGTGTGATCAGAAAGAAGAACA 57.833 37.500 0.00 0.00 0.00 3.18
1936 2163 6.767456 AGAGTGTGATCAGAAAGAAGAACAT 58.233 36.000 0.00 0.00 0.00 2.71
1937 2164 6.649973 AGAGTGTGATCAGAAAGAAGAACATG 59.350 38.462 0.00 0.00 0.00 3.21
1938 2165 5.704515 AGTGTGATCAGAAAGAAGAACATGG 59.295 40.000 0.00 0.00 0.00 3.66
1939 2166 5.702670 GTGTGATCAGAAAGAAGAACATGGA 59.297 40.000 0.00 0.00 0.00 3.41
1940 2167 6.373774 GTGTGATCAGAAAGAAGAACATGGAT 59.626 38.462 0.00 0.00 0.00 3.41
1941 2168 6.373495 TGTGATCAGAAAGAAGAACATGGATG 59.627 38.462 0.00 0.00 0.00 3.51
1942 2169 6.373774 GTGATCAGAAAGAAGAACATGGATGT 59.626 38.462 0.00 0.00 44.20 3.06
1953 2180 2.977914 ACATGGATGTTTCGGAGACTG 58.022 47.619 0.00 0.00 37.90 3.51
1954 2181 1.667724 CATGGATGTTTCGGAGACTGC 59.332 52.381 0.14 0.00 34.32 4.40
1955 2182 0.389817 TGGATGTTTCGGAGACTGCG 60.390 55.000 10.48 10.48 34.32 5.18
1956 2183 0.108804 GGATGTTTCGGAGACTGCGA 60.109 55.000 15.63 15.63 38.78 5.10
1957 2184 1.272781 GATGTTTCGGAGACTGCGAG 58.727 55.000 18.66 0.00 42.14 5.03
1958 2185 0.108615 ATGTTTCGGAGACTGCGAGG 60.109 55.000 18.66 0.00 42.14 4.63
1959 2186 1.176619 TGTTTCGGAGACTGCGAGGA 61.177 55.000 18.66 9.47 42.14 3.71
1960 2187 0.038526 GTTTCGGAGACTGCGAGGAA 60.039 55.000 18.66 9.12 42.14 3.36
1961 2188 0.038526 TTTCGGAGACTGCGAGGAAC 60.039 55.000 18.66 0.00 42.14 3.62
1962 2189 0.894184 TTCGGAGACTGCGAGGAACT 60.894 55.000 18.66 0.00 42.14 3.01
1963 2190 0.035725 TCGGAGACTGCGAGGAACTA 60.036 55.000 15.63 0.00 41.55 2.24
1964 2191 0.099082 CGGAGACTGCGAGGAACTAC 59.901 60.000 11.36 0.00 41.55 2.73
1965 2192 0.456628 GGAGACTGCGAGGAACTACC 59.543 60.000 0.00 0.00 41.55 3.18
1966 2193 0.099082 GAGACTGCGAGGAACTACCG 59.901 60.000 0.00 0.00 41.55 4.02
1967 2194 1.139095 GACTGCGAGGAACTACCGG 59.861 63.158 0.00 0.00 41.55 5.28
1968 2195 2.280823 GACTGCGAGGAACTACCGGG 62.281 65.000 6.32 0.00 41.55 5.73
1969 2196 3.072468 TGCGAGGAACTACCGGGG 61.072 66.667 6.32 0.00 41.55 5.73
1970 2197 2.757099 GCGAGGAACTACCGGGGA 60.757 66.667 6.32 0.00 41.55 4.81
1971 2198 3.073742 GCGAGGAACTACCGGGGAC 62.074 68.421 6.32 0.00 41.55 4.46
1984 2211 4.309950 GGGACGTTCCAGTGCCGT 62.310 66.667 8.43 1.10 42.56 5.68
1985 2212 2.280592 GGACGTTCCAGTGCCGTT 60.281 61.111 0.00 0.00 36.28 4.44
1986 2213 2.604174 GGACGTTCCAGTGCCGTTG 61.604 63.158 0.00 0.00 36.28 4.10
1987 2214 3.236618 GACGTTCCAGTGCCGTTGC 62.237 63.158 0.00 0.00 34.51 4.17
1988 2215 4.025401 CGTTCCAGTGCCGTTGCC 62.025 66.667 0.00 0.00 36.33 4.52
1989 2216 3.670377 GTTCCAGTGCCGTTGCCC 61.670 66.667 0.00 0.00 36.33 5.36
1990 2217 4.966787 TTCCAGTGCCGTTGCCCC 62.967 66.667 0.00 0.00 36.33 5.80
2021 2248 3.249687 GGCAACCCTTACCTCACTG 57.750 57.895 0.00 0.00 0.00 3.66
2022 2249 0.322546 GGCAACCCTTACCTCACTGG 60.323 60.000 0.00 0.00 42.93 4.00
2023 2250 0.960861 GCAACCCTTACCTCACTGGC 60.961 60.000 0.00 0.00 40.22 4.85
2024 2251 0.673644 CAACCCTTACCTCACTGGCG 60.674 60.000 0.00 0.00 40.22 5.69
2025 2252 1.838073 AACCCTTACCTCACTGGCGG 61.838 60.000 0.00 0.00 40.22 6.13
2026 2253 1.987855 CCCTTACCTCACTGGCGGA 60.988 63.158 0.00 0.00 40.22 5.54
2027 2254 1.338136 CCCTTACCTCACTGGCGGAT 61.338 60.000 0.00 0.00 40.22 4.18
2028 2255 0.179073 CCTTACCTCACTGGCGGATG 60.179 60.000 0.00 0.00 40.22 3.51
2029 2256 0.811616 CTTACCTCACTGGCGGATGC 60.812 60.000 0.00 0.00 40.22 3.91
2039 2266 4.559502 GCGGATGCCAAGGTATGT 57.440 55.556 0.00 0.00 33.98 2.29
2040 2267 3.698250 GCGGATGCCAAGGTATGTA 57.302 52.632 0.00 0.00 33.98 2.29
2041 2268 2.185004 GCGGATGCCAAGGTATGTAT 57.815 50.000 0.00 0.00 33.98 2.29
2042 2269 1.806542 GCGGATGCCAAGGTATGTATG 59.193 52.381 0.00 0.00 33.98 2.39
2043 2270 2.549992 GCGGATGCCAAGGTATGTATGA 60.550 50.000 0.00 0.00 33.98 2.15
2044 2271 3.738982 CGGATGCCAAGGTATGTATGAA 58.261 45.455 0.00 0.00 0.00 2.57
2045 2272 4.326826 CGGATGCCAAGGTATGTATGAAT 58.673 43.478 0.00 0.00 0.00 2.57
2046 2273 4.154737 CGGATGCCAAGGTATGTATGAATG 59.845 45.833 0.00 0.00 0.00 2.67
2047 2274 5.072741 GGATGCCAAGGTATGTATGAATGT 58.927 41.667 0.00 0.00 0.00 2.71
2048 2275 5.048504 GGATGCCAAGGTATGTATGAATGTG 60.049 44.000 0.00 0.00 0.00 3.21
2049 2276 5.109500 TGCCAAGGTATGTATGAATGTGA 57.891 39.130 0.00 0.00 0.00 3.58
2050 2277 5.504853 TGCCAAGGTATGTATGAATGTGAA 58.495 37.500 0.00 0.00 0.00 3.18
2051 2278 6.128486 TGCCAAGGTATGTATGAATGTGAAT 58.872 36.000 0.00 0.00 0.00 2.57
2052 2279 6.262944 TGCCAAGGTATGTATGAATGTGAATC 59.737 38.462 0.00 0.00 0.00 2.52
2053 2280 6.262944 GCCAAGGTATGTATGAATGTGAATCA 59.737 38.462 0.00 0.00 0.00 2.57
2054 2281 7.040201 GCCAAGGTATGTATGAATGTGAATCAT 60.040 37.037 0.00 0.00 40.49 2.45
2055 2282 8.294577 CCAAGGTATGTATGAATGTGAATCATG 58.705 37.037 0.00 0.00 38.01 3.07
2056 2283 8.843262 CAAGGTATGTATGAATGTGAATCATGT 58.157 33.333 0.00 0.00 38.01 3.21
2057 2284 8.985315 AGGTATGTATGAATGTGAATCATGTT 57.015 30.769 0.00 0.00 38.01 2.71
2058 2285 8.843262 AGGTATGTATGAATGTGAATCATGTTG 58.157 33.333 0.00 0.00 38.01 3.33
2059 2286 8.623903 GGTATGTATGAATGTGAATCATGTTGT 58.376 33.333 0.00 0.00 38.01 3.32
2061 2288 8.920509 ATGTATGAATGTGAATCATGTTGTTG 57.079 30.769 0.00 0.00 38.01 3.33
2062 2289 7.884257 TGTATGAATGTGAATCATGTTGTTGT 58.116 30.769 0.00 0.00 38.01 3.32
2063 2290 8.358895 TGTATGAATGTGAATCATGTTGTTGTT 58.641 29.630 0.00 0.00 38.01 2.83
2064 2291 7.646446 ATGAATGTGAATCATGTTGTTGTTG 57.354 32.000 0.00 0.00 36.21 3.33
2065 2292 6.571605 TGAATGTGAATCATGTTGTTGTTGT 58.428 32.000 0.00 0.00 36.81 3.32
2066 2293 7.040494 TGAATGTGAATCATGTTGTTGTTGTT 58.960 30.769 0.00 0.00 36.81 2.83
2067 2294 6.831727 ATGTGAATCATGTTGTTGTTGTTG 57.168 33.333 0.00 0.00 35.19 3.33
2068 2295 5.718146 TGTGAATCATGTTGTTGTTGTTGT 58.282 33.333 0.00 0.00 0.00 3.32
2069 2296 6.162079 TGTGAATCATGTTGTTGTTGTTGTT 58.838 32.000 0.00 0.00 0.00 2.83
2070 2297 6.090493 TGTGAATCATGTTGTTGTTGTTGTTG 59.910 34.615 0.00 0.00 0.00 3.33
2071 2298 6.090628 GTGAATCATGTTGTTGTTGTTGTTGT 59.909 34.615 0.00 0.00 0.00 3.32
2072 2299 6.309980 TGAATCATGTTGTTGTTGTTGTTGTC 59.690 34.615 0.00 0.00 0.00 3.18
2073 2300 4.162072 TCATGTTGTTGTTGTTGTTGTCG 58.838 39.130 0.00 0.00 0.00 4.35
2074 2301 3.627732 TGTTGTTGTTGTTGTTGTCGT 57.372 38.095 0.00 0.00 0.00 4.34
2075 2302 3.966154 TGTTGTTGTTGTTGTTGTCGTT 58.034 36.364 0.00 0.00 0.00 3.85
2076 2303 3.975670 TGTTGTTGTTGTTGTTGTCGTTC 59.024 39.130 0.00 0.00 0.00 3.95
2077 2304 3.898517 TGTTGTTGTTGTTGTCGTTCA 57.101 38.095 0.00 0.00 0.00 3.18
2078 2305 4.427096 TGTTGTTGTTGTTGTCGTTCAT 57.573 36.364 0.00 0.00 0.00 2.57
2079 2306 5.547181 TGTTGTTGTTGTTGTCGTTCATA 57.453 34.783 0.00 0.00 0.00 2.15
2080 2307 5.939457 TGTTGTTGTTGTTGTCGTTCATAA 58.061 33.333 0.00 0.00 0.00 1.90
2081 2308 6.379386 TGTTGTTGTTGTTGTCGTTCATAAA 58.621 32.000 0.00 0.00 0.00 1.40
2082 2309 6.524933 TGTTGTTGTTGTTGTCGTTCATAAAG 59.475 34.615 0.00 0.00 0.00 1.85
2083 2310 5.031578 TGTTGTTGTTGTCGTTCATAAAGC 58.968 37.500 0.00 0.00 0.00 3.51
2084 2311 5.163703 TGTTGTTGTTGTCGTTCATAAAGCT 60.164 36.000 0.00 0.00 0.00 3.74
2085 2312 6.037281 TGTTGTTGTTGTCGTTCATAAAGCTA 59.963 34.615 0.00 0.00 0.00 3.32
2086 2313 5.981174 TGTTGTTGTCGTTCATAAAGCTAC 58.019 37.500 0.00 0.00 0.00 3.58
2087 2314 5.756347 TGTTGTTGTCGTTCATAAAGCTACT 59.244 36.000 0.00 0.00 0.00 2.57
2088 2315 6.259167 TGTTGTTGTCGTTCATAAAGCTACTT 59.741 34.615 0.00 0.00 0.00 2.24
2089 2316 6.854496 TGTTGTCGTTCATAAAGCTACTTT 57.146 33.333 0.00 0.00 37.46 2.66
2090 2317 6.655062 TGTTGTCGTTCATAAAGCTACTTTG 58.345 36.000 2.88 0.00 35.21 2.77
2091 2318 6.259167 TGTTGTCGTTCATAAAGCTACTTTGT 59.741 34.615 2.88 0.00 35.21 2.83
2092 2319 6.223138 TGTCGTTCATAAAGCTACTTTGTG 57.777 37.500 9.70 9.70 41.63 3.33
2093 2320 5.080068 GTCGTTCATAAAGCTACTTTGTGC 58.920 41.667 10.79 0.15 40.62 4.57
2094 2321 4.994852 TCGTTCATAAAGCTACTTTGTGCT 59.005 37.500 10.79 0.00 40.62 4.40
2095 2322 6.090358 GTCGTTCATAAAGCTACTTTGTGCTA 59.910 38.462 10.79 1.39 40.62 3.49
2096 2323 6.090358 TCGTTCATAAAGCTACTTTGTGCTAC 59.910 38.462 10.79 10.10 40.62 3.58
2097 2324 6.090898 CGTTCATAAAGCTACTTTGTGCTACT 59.909 38.462 10.79 0.00 40.62 2.57
2098 2325 6.968131 TCATAAAGCTACTTTGTGCTACTG 57.032 37.500 10.79 0.00 40.62 2.74
2099 2326 6.464222 TCATAAAGCTACTTTGTGCTACTGT 58.536 36.000 10.79 0.00 40.62 3.55
2100 2327 7.608153 TCATAAAGCTACTTTGTGCTACTGTA 58.392 34.615 10.79 0.00 40.62 2.74
2101 2328 8.092068 TCATAAAGCTACTTTGTGCTACTGTAA 58.908 33.333 10.79 0.00 40.62 2.41
2102 2329 6.787085 AAAGCTACTTTGTGCTACTGTAAG 57.213 37.500 0.00 0.00 38.75 2.34
2103 2330 5.723672 AGCTACTTTGTGCTACTGTAAGA 57.276 39.130 0.00 0.00 37.81 2.10
2104 2331 5.471257 AGCTACTTTGTGCTACTGTAAGAC 58.529 41.667 0.00 0.00 37.81 3.01
2105 2332 5.010719 AGCTACTTTGTGCTACTGTAAGACA 59.989 40.000 0.00 0.00 37.81 3.41
2106 2333 5.869888 GCTACTTTGTGCTACTGTAAGACAT 59.130 40.000 0.00 0.00 37.43 3.06
2107 2334 6.369065 GCTACTTTGTGCTACTGTAAGACATT 59.631 38.462 0.00 0.00 37.43 2.71
2108 2335 6.545504 ACTTTGTGCTACTGTAAGACATTG 57.454 37.500 0.00 0.00 37.43 2.82
2109 2336 5.470098 ACTTTGTGCTACTGTAAGACATTGG 59.530 40.000 0.00 0.00 37.43 3.16
2110 2337 4.882842 TGTGCTACTGTAAGACATTGGA 57.117 40.909 0.00 0.00 37.43 3.53
2111 2338 5.420725 TGTGCTACTGTAAGACATTGGAT 57.579 39.130 0.00 0.00 37.43 3.41
2112 2339 5.804639 TGTGCTACTGTAAGACATTGGATT 58.195 37.500 0.00 0.00 37.43 3.01
2113 2340 6.941857 TGTGCTACTGTAAGACATTGGATTA 58.058 36.000 0.00 0.00 37.43 1.75
2114 2341 6.816640 TGTGCTACTGTAAGACATTGGATTAC 59.183 38.462 6.41 6.41 37.43 1.89
2115 2342 6.816640 GTGCTACTGTAAGACATTGGATTACA 59.183 38.462 12.55 12.55 37.14 2.41
2116 2343 7.495934 GTGCTACTGTAAGACATTGGATTACAT 59.504 37.037 13.20 8.57 38.39 2.29
2117 2344 8.046708 TGCTACTGTAAGACATTGGATTACATT 58.953 33.333 13.20 11.23 38.39 2.71
2118 2345 8.893727 GCTACTGTAAGACATTGGATTACATTT 58.106 33.333 13.20 8.44 38.39 2.32
2121 2348 9.520515 ACTGTAAGACATTGGATTACATTTTCT 57.479 29.630 13.20 0.00 38.39 2.52
2160 2387 9.987726 ATATAGATATCAAGGAGTGTGATCAGA 57.012 33.333 5.32 0.00 37.01 3.27
2161 2388 8.718158 ATAGATATCAAGGAGTGTGATCAGAA 57.282 34.615 5.32 0.00 37.01 3.02
2162 2389 7.429374 AGATATCAAGGAGTGTGATCAGAAA 57.571 36.000 5.32 0.00 37.01 2.52
2163 2390 7.499292 AGATATCAAGGAGTGTGATCAGAAAG 58.501 38.462 5.32 0.00 37.01 2.62
2164 2391 5.752036 ATCAAGGAGTGTGATCAGAAAGA 57.248 39.130 0.00 0.00 29.51 2.52
2165 2392 5.551305 TCAAGGAGTGTGATCAGAAAGAA 57.449 39.130 0.00 0.00 0.00 2.52
2166 2393 5.545588 TCAAGGAGTGTGATCAGAAAGAAG 58.454 41.667 0.00 0.00 0.00 2.85
2167 2394 5.305386 TCAAGGAGTGTGATCAGAAAGAAGA 59.695 40.000 0.00 0.00 0.00 2.87
2247 2474 1.372501 AGGGTTCCATGGCAACTACT 58.627 50.000 19.77 16.36 37.61 2.57
2274 2501 1.796796 GGCGGCTGCTTTAAGTCTG 59.203 57.895 18.85 0.00 42.25 3.51
2302 2531 4.067896 ACAGGTATGCAACAACTGAGAAG 58.932 43.478 20.23 0.00 33.57 2.85
2309 2538 3.316029 TGCAACAACTGAGAAGTTCATGG 59.684 43.478 5.50 0.00 34.68 3.66
2416 2649 4.703093 TCGGGTTTAATCATTGGTCTTTCC 59.297 41.667 0.00 0.00 0.00 3.13
2477 2710 4.546570 CGCACTTCTCATAATCCGTGATA 58.453 43.478 0.00 0.00 0.00 2.15
2501 2734 3.149196 GAGCAACACAAGGGAAAGATGA 58.851 45.455 0.00 0.00 0.00 2.92
2520 2753 9.784531 AAAGATGATGAGACAGAAGTTCTTTAA 57.215 29.630 1.56 0.00 31.23 1.52
2554 2787 5.215160 GGACAATTGTTGAAGCAGTTAGTG 58.785 41.667 13.36 0.00 0.00 2.74
2593 2826 1.208293 GCGGAGAGGATGATAATCCCC 59.792 57.143 5.34 0.00 41.65 4.81
2596 2829 3.055530 CGGAGAGGATGATAATCCCCTTG 60.056 52.174 5.34 0.00 41.65 3.61
2634 2867 3.305335 GCCACCAACAATTTCGATCAAGT 60.305 43.478 0.00 0.00 0.00 3.16
2791 3024 4.900635 ATCGCAAATCAACCATAGGAAC 57.099 40.909 0.00 0.00 0.00 3.62
2856 3089 8.091449 CCCTTTACTAGCCTATGAGTTTATCTG 58.909 40.741 0.00 0.00 0.00 2.90
2914 3147 4.530161 GCACTAGGATCACTATCTTGGGAT 59.470 45.833 0.00 0.00 36.07 3.85
2930 3163 5.246203 TCTTGGGATGATAGGTTAAGGATCG 59.754 44.000 0.00 0.00 0.00 3.69
2955 3188 3.760684 AGTGAAATAGGCAAAGCTCTTGG 59.239 43.478 9.63 0.00 0.00 3.61
2971 3204 4.396478 GCTCTTGGTTACCTTCATTCTTCC 59.604 45.833 2.07 0.00 0.00 3.46
3044 3277 3.755905 TGACGATGCCTTGATAGCAAAAA 59.244 39.130 0.00 0.00 44.83 1.94
3342 3579 4.254492 CAAGTTTTAGAGGAGGCAGGTAC 58.746 47.826 0.00 0.00 0.00 3.34
3539 3777 3.722147 CATCTACCATCGGAGGAACAAG 58.278 50.000 0.93 0.00 0.00 3.16
3545 3783 2.543067 ATCGGAGGAACAAGCCTGCC 62.543 60.000 0.00 0.00 42.81 4.85
3584 3822 7.481642 CGTCATAGCCTAGAAGAAGAGTTTAA 58.518 38.462 0.00 0.00 0.00 1.52
3630 3868 1.723608 TTTGCCGTGCTTGTGACTGG 61.724 55.000 0.00 0.00 0.00 4.00
3631 3869 2.591715 GCCGTGCTTGTGACTGGT 60.592 61.111 0.00 0.00 0.00 4.00
3643 3881 9.040939 GTGCTTGTGACTGGTTTTATTTATTTT 57.959 29.630 0.00 0.00 0.00 1.82
3924 4374 5.560724 TGTGCCTAAGCTTGAAGACTAATT 58.439 37.500 9.86 0.00 40.80 1.40
3949 4399 9.862371 TTCGCACCATTTATATTTTGTATTTGT 57.138 25.926 0.00 0.00 0.00 2.83
3964 4414 4.695455 TGTATTTGTGACAGCCTAAAGAGC 59.305 41.667 0.00 0.00 0.00 4.09
3981 4431 9.912634 CCTAAAGAGCAATGAATTTTTGACTAA 57.087 29.630 6.32 0.00 0.00 2.24
4005 4455 6.689554 AGTCAACTAGGAGCTTAGTTTGTAC 58.310 40.000 7.90 7.31 40.86 2.90
4019 4469 4.369182 AGTTTGTACGTCTGACTTCCTTG 58.631 43.478 6.21 0.00 0.00 3.61
4020 4470 2.433868 TGTACGTCTGACTTCCTTGC 57.566 50.000 6.21 0.00 0.00 4.01
4023 4473 1.040646 ACGTCTGACTTCCTTGCTGA 58.959 50.000 6.21 0.00 0.00 4.26
4040 4490 5.084818 TGCTGACAAAATCGAATCTCCTA 57.915 39.130 0.00 0.00 0.00 2.94
4041 4491 5.487433 TGCTGACAAAATCGAATCTCCTAA 58.513 37.500 0.00 0.00 0.00 2.69
4043 4493 6.429692 TGCTGACAAAATCGAATCTCCTAAAA 59.570 34.615 0.00 0.00 0.00 1.52
4046 4496 9.282247 CTGACAAAATCGAATCTCCTAAAAATG 57.718 33.333 0.00 0.00 0.00 2.32
4047 4497 9.008965 TGACAAAATCGAATCTCCTAAAAATGA 57.991 29.630 0.00 0.00 0.00 2.57
4055 4505 2.017049 CTCCTAAAAATGAGCACCCGG 58.983 52.381 0.00 0.00 0.00 5.73
4070 4520 1.689233 CCGGTCCTTGATCTCCCCA 60.689 63.158 0.00 0.00 0.00 4.96
4073 4523 0.543749 GGTCCTTGATCTCCCCACAG 59.456 60.000 0.00 0.00 0.00 3.66
4103 4553 2.380084 TCTTCTCCATACGCCACAAC 57.620 50.000 0.00 0.00 0.00 3.32
4104 4554 1.066430 TCTTCTCCATACGCCACAACC 60.066 52.381 0.00 0.00 0.00 3.77
4119 4569 3.949754 CCACAACCAGTCTGCATCAATAT 59.050 43.478 0.00 0.00 0.00 1.28
4130 4580 9.053840 CAGTCTGCATCAATATTACAGATTCTT 57.946 33.333 10.86 0.38 39.39 2.52
4142 4592 7.709149 ATTACAGATTCTTTTTGGAGGGAAG 57.291 36.000 0.00 0.00 0.00 3.46
4145 4595 6.318112 ACAGATTCTTTTTGGAGGGAAGATT 58.682 36.000 0.00 0.00 30.26 2.40
4146 4596 7.470192 ACAGATTCTTTTTGGAGGGAAGATTA 58.530 34.615 0.00 0.00 30.26 1.75
4147 4597 7.950124 ACAGATTCTTTTTGGAGGGAAGATTAA 59.050 33.333 0.00 0.00 30.26 1.40
4148 4598 8.246871 CAGATTCTTTTTGGAGGGAAGATTAAC 58.753 37.037 0.00 0.00 30.26 2.01
4149 4599 7.950124 AGATTCTTTTTGGAGGGAAGATTAACA 59.050 33.333 0.00 0.00 30.26 2.41
4150 4600 6.894339 TCTTTTTGGAGGGAAGATTAACAC 57.106 37.500 0.00 0.00 0.00 3.32
4151 4601 6.369629 TCTTTTTGGAGGGAAGATTAACACA 58.630 36.000 0.00 0.00 0.00 3.72
4152 4602 6.836527 TCTTTTTGGAGGGAAGATTAACACAA 59.163 34.615 0.00 0.00 0.00 3.33
4153 4603 6.399639 TTTTGGAGGGAAGATTAACACAAC 57.600 37.500 0.00 0.00 0.00 3.32
4154 4604 4.715534 TGGAGGGAAGATTAACACAACA 57.284 40.909 0.00 0.00 0.00 3.33
4155 4605 5.255397 TGGAGGGAAGATTAACACAACAT 57.745 39.130 0.00 0.00 0.00 2.71
4156 4606 5.640147 TGGAGGGAAGATTAACACAACATT 58.360 37.500 0.00 0.00 0.00 2.71
4157 4607 6.074648 TGGAGGGAAGATTAACACAACATTT 58.925 36.000 0.00 0.00 0.00 2.32
4158 4608 6.208599 TGGAGGGAAGATTAACACAACATTTC 59.791 38.462 0.00 0.00 0.00 2.17
4159 4609 6.434340 GGAGGGAAGATTAACACAACATTTCT 59.566 38.462 0.00 0.00 0.00 2.52
4160 4610 7.362142 GGAGGGAAGATTAACACAACATTTCTC 60.362 40.741 0.00 0.00 0.00 2.87
4161 4611 6.149474 AGGGAAGATTAACACAACATTTCTCG 59.851 38.462 0.00 0.00 0.00 4.04
4162 4612 5.795441 GGAAGATTAACACAACATTTCTCGC 59.205 40.000 0.00 0.00 0.00 5.03
4163 4613 5.296813 AGATTAACACAACATTTCTCGCC 57.703 39.130 0.00 0.00 0.00 5.54
4164 4614 4.759693 AGATTAACACAACATTTCTCGCCA 59.240 37.500 0.00 0.00 0.00 5.69
4165 4615 4.902443 TTAACACAACATTTCTCGCCAA 57.098 36.364 0.00 0.00 0.00 4.52
4166 4616 3.791973 AACACAACATTTCTCGCCAAA 57.208 38.095 0.00 0.00 0.00 3.28
4167 4617 3.791973 ACACAACATTTCTCGCCAAAA 57.208 38.095 0.00 0.00 0.00 2.44
4168 4618 4.116747 ACACAACATTTCTCGCCAAAAA 57.883 36.364 0.00 0.00 0.00 1.94
4193 4643 3.558931 AGATCAACACAACACCTCACA 57.441 42.857 0.00 0.00 0.00 3.58
4236 4686 8.482128 AGGACCAAAAATTCAAAACAAGTATGA 58.518 29.630 0.00 0.00 0.00 2.15
4243 4693 9.934190 AAAATTCAAAACAAGTATGAATGCAAC 57.066 25.926 12.18 0.00 41.58 4.17
4244 4694 6.746104 TTCAAAACAAGTATGAATGCAACG 57.254 33.333 0.00 0.00 0.00 4.10
4270 4721 7.255486 GGCACAAATACTTCTTTTTAGAGGTGT 60.255 37.037 0.00 0.00 30.65 4.16
4291 4743 0.318360 TCACGGTACACTTCACAGCG 60.318 55.000 0.00 0.00 38.99 5.18
4296 4748 1.725164 GGTACACTTCACAGCGCTAAC 59.275 52.381 10.99 0.00 0.00 2.34
4314 4766 2.789409 ACAGTAAGGGCATCTCCAAC 57.211 50.000 0.00 0.00 36.21 3.77
4316 4768 1.066143 CAGTAAGGGCATCTCCAACGT 60.066 52.381 0.00 0.00 36.21 3.99
4321 4773 0.179000 GGGCATCTCCAACGTCATCT 59.821 55.000 0.00 0.00 36.21 2.90
4322 4774 1.576356 GGCATCTCCAACGTCATCTC 58.424 55.000 0.00 0.00 34.01 2.75
4331 4783 5.186992 TCTCCAACGTCATCTCCTAAAATGA 59.813 40.000 0.00 0.00 0.00 2.57
4347 4799 7.721842 TCCTAAAATGAACACACTATTTGTCCA 59.278 33.333 0.00 0.00 35.67 4.02
4348 4800 8.522830 CCTAAAATGAACACACTATTTGTCCAT 58.477 33.333 0.00 0.00 35.67 3.41
4349 4801 9.345517 CTAAAATGAACACACTATTTGTCCATG 57.654 33.333 0.00 0.00 35.67 3.66
4350 4802 5.902613 ATGAACACACTATTTGTCCATGG 57.097 39.130 4.97 4.97 35.67 3.66
4351 4803 4.979335 TGAACACACTATTTGTCCATGGA 58.021 39.130 11.44 11.44 35.67 3.41
4352 4804 4.759693 TGAACACACTATTTGTCCATGGAC 59.240 41.667 33.97 33.97 44.77 4.02
4353 4805 4.640771 ACACACTATTTGTCCATGGACT 57.359 40.909 37.92 24.45 44.80 3.85
4354 4806 4.326826 ACACACTATTTGTCCATGGACTG 58.673 43.478 37.92 29.41 44.80 3.51
4355 4807 4.041567 ACACACTATTTGTCCATGGACTGA 59.958 41.667 37.92 28.02 44.80 3.41
4356 4808 5.188434 CACACTATTTGTCCATGGACTGAT 58.812 41.667 37.92 31.27 44.80 2.90
4357 4809 5.295292 CACACTATTTGTCCATGGACTGATC 59.705 44.000 37.92 17.93 44.80 2.92
4358 4810 5.045651 ACACTATTTGTCCATGGACTGATCA 60.046 40.000 37.92 20.25 44.80 2.92
4359 4811 5.526479 CACTATTTGTCCATGGACTGATCAG 59.474 44.000 37.92 28.75 44.80 2.90
4360 4812 3.354948 TTTGTCCATGGACTGATCAGG 57.645 47.619 37.92 8.82 44.80 3.86
4361 4813 2.252535 TGTCCATGGACTGATCAGGA 57.747 50.000 37.92 18.11 44.80 3.86
4362 4814 1.833630 TGTCCATGGACTGATCAGGAC 59.166 52.381 37.92 21.66 44.80 3.85
4363 4815 1.139853 GTCCATGGACTGATCAGGACC 59.860 57.143 33.47 25.32 41.57 4.46
4364 4816 1.206878 CCATGGACTGATCAGGACCA 58.793 55.000 31.32 31.32 40.85 4.02
4365 4817 1.561076 CCATGGACTGATCAGGACCAA 59.439 52.381 32.19 21.77 40.33 3.67
4366 4818 2.174210 CCATGGACTGATCAGGACCAAT 59.826 50.000 32.19 22.58 40.33 3.16
4367 4819 3.474600 CATGGACTGATCAGGACCAATC 58.525 50.000 32.19 19.16 40.33 2.67
4368 4820 1.839994 TGGACTGATCAGGACCAATCC 59.160 52.381 29.03 23.39 46.69 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.989551 TGTATCACATGGATTGAATCACG 57.010 39.130 7.56 0.00 37.44 4.35
134 135 2.818130 ACCATGTGAAATGTGGTTGC 57.182 45.000 0.00 0.00 43.44 4.17
153 154 1.344438 CCACAGAGACAGCCTGTACAA 59.656 52.381 0.00 0.00 42.44 2.41
231 232 6.648725 CACATGTAACAGGGGGTTAATTTTTG 59.351 38.462 0.00 0.00 43.30 2.44
245 246 3.218453 TGGGGTCAAACACATGTAACAG 58.782 45.455 0.00 0.00 0.00 3.16
272 273 6.558771 TGACTTCAAATACATGGAGTGTTG 57.441 37.500 0.00 0.00 39.30 3.33
342 343 5.801444 AGTGCGTAAAACTTTTTGTACAACC 59.199 36.000 8.07 0.00 0.00 3.77
346 347 7.904461 TGAACTAGTGCGTAAAACTTTTTGTAC 59.096 33.333 0.00 0.00 0.00 2.90
361 362 4.180817 TGTCACCATAATGAACTAGTGCG 58.819 43.478 0.00 0.00 0.00 5.34
397 398 2.907042 CCCATCCATAACTACTCCCCTC 59.093 54.545 0.00 0.00 0.00 4.30
411 412 2.494471 CGTACTAGTGTGTTCCCATCCA 59.506 50.000 5.39 0.00 0.00 3.41
538 539 3.459232 AGAGGCAAGGCAAAAGTTTTC 57.541 42.857 0.00 0.00 0.00 2.29
576 577 0.179215 GCTGCGTCATTTCCGACTTG 60.179 55.000 0.00 0.00 33.54 3.16
578 579 1.005037 TGCTGCGTCATTTCCGACT 60.005 52.632 0.00 0.00 33.54 4.18
591 592 5.055812 AGCTAATAAGATGAGTTCTGCTGC 58.944 41.667 0.00 0.00 33.93 5.25
605 606 8.150945 TGGAGGCTAATACTTCAAGCTAATAAG 58.849 37.037 0.00 0.00 36.48 1.73
685 686 5.991933 TTAACCAATGCATAGCCAAAGAA 57.008 34.783 0.00 0.00 0.00 2.52
876 897 0.823356 GAGCCAACCTGGTGCTTCAA 60.823 55.000 12.37 0.00 40.46 2.69
877 898 1.228245 GAGCCAACCTGGTGCTTCA 60.228 57.895 12.37 0.00 40.46 3.02
878 899 1.973812 GGAGCCAACCTGGTGCTTC 60.974 63.158 12.37 7.34 40.46 3.86
879 900 2.116125 GGAGCCAACCTGGTGCTT 59.884 61.111 12.37 0.00 40.46 3.91
880 901 3.971702 GGGAGCCAACCTGGTGCT 61.972 66.667 11.10 11.10 40.46 4.40
882 903 4.722700 CGGGGAGCCAACCTGGTG 62.723 72.222 0.00 0.00 40.46 4.17
917 938 4.826274 AGAGCTAGCCAATTTCTGTGTA 57.174 40.909 12.13 0.00 0.00 2.90
922 943 3.483808 GCCTAGAGCTAGCCAATTTCT 57.516 47.619 12.13 9.88 38.99 2.52
935 956 4.819105 TCTAGCTAGCTAGAGCCTAGAG 57.181 50.000 38.90 21.19 46.94 2.43
971 996 4.797800 ATATGGAGATGGATCGACTGTG 57.202 45.455 0.00 0.00 0.00 3.66
980 1005 2.046292 TGACGGCAATATGGAGATGGA 58.954 47.619 0.00 0.00 0.00 3.41
1047 1213 4.717629 TCGCTTCCACGGTCGCAG 62.718 66.667 0.00 0.00 0.00 5.18
1121 1287 0.723981 GTTGTTCTCTGGCGAGATGC 59.276 55.000 0.00 7.01 45.27 3.91
1127 1293 0.439985 CATCGTGTTGTTCTCTGGCG 59.560 55.000 0.00 0.00 0.00 5.69
1129 1295 0.439985 CGCATCGTGTTGTTCTCTGG 59.560 55.000 0.00 0.00 0.00 3.86
1130 1296 0.179240 GCGCATCGTGTTGTTCTCTG 60.179 55.000 0.30 0.00 0.00 3.35
1164 1330 1.474879 CTCATGTTCATGGCATGCACA 59.525 47.619 29.80 29.80 42.34 4.57
1224 1390 2.086869 CCCAAGAGTGTGTATGGCAAG 58.913 52.381 0.00 0.00 0.00 4.01
1225 1391 1.271871 CCCCAAGAGTGTGTATGGCAA 60.272 52.381 0.00 0.00 0.00 4.52
1236 1402 0.849094 TTATGCCCCACCCCAAGAGT 60.849 55.000 0.00 0.00 0.00 3.24
1358 1530 1.065928 GCCTCGTACCACTCCATCG 59.934 63.158 0.00 0.00 0.00 3.84
1365 1537 2.953466 TGTCATAAGCCTCGTACCAC 57.047 50.000 0.00 0.00 0.00 4.16
1371 1543 0.807667 AGCGCTTGTCATAAGCCTCG 60.808 55.000 2.64 0.00 40.02 4.63
1374 1546 1.063166 GCAGCGCTTGTCATAAGCC 59.937 57.895 7.50 0.00 40.02 4.35
1381 1553 1.785041 TTGTTGGAGCAGCGCTTGTC 61.785 55.000 7.50 7.28 39.88 3.18
1388 1560 2.980233 AGCCGTTGTTGGAGCAGC 60.980 61.111 0.00 0.00 0.00 5.25
1431 1606 0.456221 CCACTCCGTAGAATGCGTCT 59.544 55.000 0.00 0.00 44.88 4.18
1464 1639 1.920325 CTCTGGAAGGCCCCTGTCA 60.920 63.158 0.00 0.00 0.00 3.58
1540 1718 2.566833 TCTGTGGACAAATCCCTGTG 57.433 50.000 0.00 0.00 45.59 3.66
1543 1721 3.054802 GTCAGATCTGTGGACAAATCCCT 60.055 47.826 21.92 0.00 45.59 4.20
1544 1722 3.274288 GTCAGATCTGTGGACAAATCCC 58.726 50.000 21.92 0.00 45.59 3.85
1548 1726 3.244215 GGTCTGTCAGATCTGTGGACAAA 60.244 47.826 28.02 13.28 40.67 2.83
1558 1736 1.078759 CGCGTTGGGTCTGTCAGATC 61.079 60.000 5.68 4.99 0.00 2.75
1590 1768 2.768834 GACCCGCAGAATGGTCTTC 58.231 57.895 1.51 0.00 46.13 2.87
1621 1799 4.954970 CTGCGGCACCACCCAACT 62.955 66.667 0.00 0.00 33.26 3.16
1644 1822 4.261801 CGGGGTATTTCATATCATGGGAC 58.738 47.826 0.00 0.00 0.00 4.46
1648 1826 4.905429 TCACCGGGGTATTTCATATCATG 58.095 43.478 2.12 0.00 0.00 3.07
1665 1843 4.463879 CTCCAGGCTGCCTCACCG 62.464 72.222 20.49 7.56 0.00 4.94
1719 1897 3.876914 TGCCTCTTACTGGAAAATATGCG 59.123 43.478 0.00 0.00 0.00 4.73
1749 1927 1.218316 GTACCCCTCCTTGCACTCG 59.782 63.158 0.00 0.00 0.00 4.18
1819 1997 5.181056 AGCATTATGAACAACAACGACATGA 59.819 36.000 0.00 0.00 0.00 3.07
1825 2045 7.851822 AAAAGTAGCATTATGAACAACAACG 57.148 32.000 0.00 0.00 0.00 4.10
1933 2160 2.936993 GCAGTCTCCGAAACATCCATGT 60.937 50.000 0.00 0.00 44.20 3.21
1934 2161 1.667724 GCAGTCTCCGAAACATCCATG 59.332 52.381 0.00 0.00 0.00 3.66
1935 2162 1.740380 CGCAGTCTCCGAAACATCCAT 60.740 52.381 0.00 0.00 0.00 3.41
1936 2163 0.389817 CGCAGTCTCCGAAACATCCA 60.390 55.000 0.00 0.00 0.00 3.41
1937 2164 0.108804 TCGCAGTCTCCGAAACATCC 60.109 55.000 0.00 0.00 0.00 3.51
1938 2165 1.272781 CTCGCAGTCTCCGAAACATC 58.727 55.000 0.00 0.00 33.92 3.06
1939 2166 0.108615 CCTCGCAGTCTCCGAAACAT 60.109 55.000 0.00 0.00 33.92 2.71
1940 2167 1.176619 TCCTCGCAGTCTCCGAAACA 61.177 55.000 0.00 0.00 33.92 2.83
1941 2168 0.038526 TTCCTCGCAGTCTCCGAAAC 60.039 55.000 0.00 0.00 33.92 2.78
1942 2169 0.038526 GTTCCTCGCAGTCTCCGAAA 60.039 55.000 0.00 0.00 33.92 3.46
1943 2170 0.894184 AGTTCCTCGCAGTCTCCGAA 60.894 55.000 0.00 0.00 33.92 4.30
1944 2171 0.035725 TAGTTCCTCGCAGTCTCCGA 60.036 55.000 0.00 0.00 0.00 4.55
1945 2172 0.099082 GTAGTTCCTCGCAGTCTCCG 59.901 60.000 0.00 0.00 0.00 4.63
1946 2173 0.456628 GGTAGTTCCTCGCAGTCTCC 59.543 60.000 0.00 0.00 0.00 3.71
1947 2174 0.099082 CGGTAGTTCCTCGCAGTCTC 59.901 60.000 0.00 0.00 0.00 3.36
1948 2175 1.313812 CCGGTAGTTCCTCGCAGTCT 61.314 60.000 0.00 0.00 0.00 3.24
1949 2176 1.139095 CCGGTAGTTCCTCGCAGTC 59.861 63.158 0.00 0.00 0.00 3.51
1950 2177 2.348888 CCCGGTAGTTCCTCGCAGT 61.349 63.158 0.00 0.00 0.00 4.40
1951 2178 2.494918 CCCGGTAGTTCCTCGCAG 59.505 66.667 0.00 0.00 0.00 5.18
1952 2179 3.072468 CCCCGGTAGTTCCTCGCA 61.072 66.667 0.00 0.00 0.00 5.10
1953 2180 2.757099 TCCCCGGTAGTTCCTCGC 60.757 66.667 0.00 0.00 0.00 5.03
1954 2181 2.768492 CGTCCCCGGTAGTTCCTCG 61.768 68.421 0.00 0.00 0.00 4.63
1955 2182 1.253593 AACGTCCCCGGTAGTTCCTC 61.254 60.000 0.00 0.00 38.78 3.71
1956 2183 1.228988 AACGTCCCCGGTAGTTCCT 60.229 57.895 0.00 0.00 38.78 3.36
1957 2184 1.216444 GAACGTCCCCGGTAGTTCC 59.784 63.158 13.97 2.00 37.57 3.62
1958 2185 1.216444 GGAACGTCCCCGGTAGTTC 59.784 63.158 15.65 15.65 41.40 3.01
1959 2186 1.533753 TGGAACGTCCCCGGTAGTT 60.534 57.895 0.00 0.24 35.03 2.24
1960 2187 1.980772 CTGGAACGTCCCCGGTAGT 60.981 63.158 0.00 0.00 35.03 2.73
1961 2188 1.980772 ACTGGAACGTCCCCGGTAG 60.981 63.158 16.95 0.00 41.27 3.18
1962 2189 2.118076 ACTGGAACGTCCCCGGTA 59.882 61.111 16.95 0.00 41.27 4.02
1963 2190 3.622826 CACTGGAACGTCCCCGGT 61.623 66.667 13.78 13.78 43.73 5.28
1967 2194 3.819877 AACGGCACTGGAACGTCCC 62.820 63.158 0.00 0.00 40.31 4.46
1968 2195 2.280592 AACGGCACTGGAACGTCC 60.281 61.111 0.00 0.00 40.31 4.79
1969 2196 2.935955 CAACGGCACTGGAACGTC 59.064 61.111 0.00 0.00 40.31 4.34
1970 2197 3.276846 GCAACGGCACTGGAACGT 61.277 61.111 0.00 0.00 43.43 3.99
1971 2198 4.025401 GGCAACGGCACTGGAACG 62.025 66.667 0.00 0.00 43.71 3.95
1972 2199 3.670377 GGGCAACGGCACTGGAAC 61.670 66.667 0.00 0.00 41.45 3.62
1973 2200 4.966787 GGGGCAACGGCACTGGAA 62.967 66.667 0.00 0.00 45.12 3.53
1989 2216 2.598787 TTGCCCTGGTACCCTTCGG 61.599 63.158 10.07 4.37 0.00 4.30
1990 2217 1.376812 GTTGCCCTGGTACCCTTCG 60.377 63.158 10.07 0.00 0.00 3.79
1991 2218 1.001269 GGTTGCCCTGGTACCCTTC 60.001 63.158 10.07 0.00 0.00 3.46
1992 2219 2.544745 GGGTTGCCCTGGTACCCTT 61.545 63.158 10.07 0.00 46.55 3.95
1993 2220 2.939353 GGGTTGCCCTGGTACCCT 60.939 66.667 10.07 0.00 46.55 4.34
2002 2229 0.322546 CAGTGAGGTAAGGGTTGCCC 60.323 60.000 0.00 0.00 45.90 5.36
2003 2230 0.322546 CCAGTGAGGTAAGGGTTGCC 60.323 60.000 0.00 0.00 35.41 4.52
2004 2231 0.960861 GCCAGTGAGGTAAGGGTTGC 60.961 60.000 0.00 0.00 40.61 4.17
2005 2232 0.673644 CGCCAGTGAGGTAAGGGTTG 60.674 60.000 0.00 0.00 40.61 3.77
2006 2233 1.677552 CGCCAGTGAGGTAAGGGTT 59.322 57.895 0.00 0.00 40.61 4.11
2007 2234 2.291043 CCGCCAGTGAGGTAAGGGT 61.291 63.158 0.00 0.00 40.61 4.34
2008 2235 1.338136 ATCCGCCAGTGAGGTAAGGG 61.338 60.000 0.00 0.00 40.61 3.95
2009 2236 0.179073 CATCCGCCAGTGAGGTAAGG 60.179 60.000 0.00 0.00 40.61 2.69
2010 2237 0.811616 GCATCCGCCAGTGAGGTAAG 60.812 60.000 0.00 0.00 40.61 2.34
2011 2238 1.220749 GCATCCGCCAGTGAGGTAA 59.779 57.895 0.00 0.00 40.61 2.85
2012 2239 2.900273 GCATCCGCCAGTGAGGTA 59.100 61.111 0.00 0.00 40.61 3.08
2022 2249 1.806542 CATACATACCTTGGCATCCGC 59.193 52.381 0.00 0.00 37.44 5.54
2023 2250 3.401033 TCATACATACCTTGGCATCCG 57.599 47.619 0.00 0.00 0.00 4.18
2024 2251 5.048504 CACATTCATACATACCTTGGCATCC 60.049 44.000 0.00 0.00 0.00 3.51
2025 2252 5.764686 TCACATTCATACATACCTTGGCATC 59.235 40.000 0.00 0.00 0.00 3.91
2026 2253 5.693961 TCACATTCATACATACCTTGGCAT 58.306 37.500 0.00 0.00 0.00 4.40
2027 2254 5.109500 TCACATTCATACATACCTTGGCA 57.891 39.130 0.00 0.00 0.00 4.92
2028 2255 6.262944 TGATTCACATTCATACATACCTTGGC 59.737 38.462 0.00 0.00 0.00 4.52
2029 2256 7.806409 TGATTCACATTCATACATACCTTGG 57.194 36.000 0.00 0.00 0.00 3.61
2030 2257 8.843262 ACATGATTCACATTCATACATACCTTG 58.157 33.333 0.00 0.00 37.07 3.61
2031 2258 8.985315 ACATGATTCACATTCATACATACCTT 57.015 30.769 0.00 0.00 37.07 3.50
2032 2259 8.843262 CAACATGATTCACATTCATACATACCT 58.157 33.333 0.00 0.00 37.07 3.08
2033 2260 8.623903 ACAACATGATTCACATTCATACATACC 58.376 33.333 0.00 0.00 37.07 2.73
2036 2263 8.525316 ACAACAACATGATTCACATTCATACAT 58.475 29.630 0.00 0.00 37.07 2.29
2037 2264 7.884257 ACAACAACATGATTCACATTCATACA 58.116 30.769 0.00 0.00 37.07 2.29
2038 2265 8.641155 CAACAACAACATGATTCACATTCATAC 58.359 33.333 0.00 0.00 37.07 2.39
2039 2266 8.358895 ACAACAACAACATGATTCACATTCATA 58.641 29.630 0.00 0.00 37.07 2.15
2040 2267 7.211573 ACAACAACAACATGATTCACATTCAT 58.788 30.769 0.00 0.00 37.07 2.57
2041 2268 6.571605 ACAACAACAACATGATTCACATTCA 58.428 32.000 0.00 0.00 37.07 2.57
2042 2269 7.010367 ACAACAACAACAACATGATTCACATTC 59.990 33.333 0.00 0.00 37.07 2.67
2043 2270 6.817641 ACAACAACAACAACATGATTCACATT 59.182 30.769 0.00 0.00 37.07 2.71
2044 2271 6.339730 ACAACAACAACAACATGATTCACAT 58.660 32.000 0.00 0.00 40.17 3.21
2045 2272 5.718146 ACAACAACAACAACATGATTCACA 58.282 33.333 0.00 0.00 0.00 3.58
2046 2273 6.090628 ACAACAACAACAACAACATGATTCAC 59.909 34.615 0.00 0.00 0.00 3.18
2047 2274 6.162079 ACAACAACAACAACAACATGATTCA 58.838 32.000 0.00 0.00 0.00 2.57
2048 2275 6.506200 CGACAACAACAACAACAACATGATTC 60.506 38.462 0.00 0.00 0.00 2.52
2049 2276 5.288232 CGACAACAACAACAACAACATGATT 59.712 36.000 0.00 0.00 0.00 2.57
2050 2277 4.797868 CGACAACAACAACAACAACATGAT 59.202 37.500 0.00 0.00 0.00 2.45
2051 2278 4.162072 CGACAACAACAACAACAACATGA 58.838 39.130 0.00 0.00 0.00 3.07
2052 2279 3.917380 ACGACAACAACAACAACAACATG 59.083 39.130 0.00 0.00 0.00 3.21
2053 2280 4.167554 ACGACAACAACAACAACAACAT 57.832 36.364 0.00 0.00 0.00 2.71
2054 2281 3.627732 ACGACAACAACAACAACAACA 57.372 38.095 0.00 0.00 0.00 3.33
2055 2282 3.975670 TGAACGACAACAACAACAACAAC 59.024 39.130 0.00 0.00 0.00 3.32
2056 2283 4.224715 TGAACGACAACAACAACAACAA 57.775 36.364 0.00 0.00 0.00 2.83
2057 2284 3.898517 TGAACGACAACAACAACAACA 57.101 38.095 0.00 0.00 0.00 3.33
2058 2285 6.505732 GCTTTATGAACGACAACAACAACAAC 60.506 38.462 0.00 0.00 0.00 3.32
2059 2286 5.513495 GCTTTATGAACGACAACAACAACAA 59.487 36.000 0.00 0.00 0.00 2.83
2060 2287 5.031578 GCTTTATGAACGACAACAACAACA 58.968 37.500 0.00 0.00 0.00 3.33
2061 2288 5.270853 AGCTTTATGAACGACAACAACAAC 58.729 37.500 0.00 0.00 0.00 3.32
2062 2289 5.493133 AGCTTTATGAACGACAACAACAA 57.507 34.783 0.00 0.00 0.00 2.83
2063 2290 5.756347 AGTAGCTTTATGAACGACAACAACA 59.244 36.000 0.00 0.00 0.00 3.33
2064 2291 6.224420 AGTAGCTTTATGAACGACAACAAC 57.776 37.500 0.00 0.00 0.00 3.32
2065 2292 6.854496 AAGTAGCTTTATGAACGACAACAA 57.146 33.333 0.00 0.00 0.00 2.83
2066 2293 6.259167 ACAAAGTAGCTTTATGAACGACAACA 59.741 34.615 0.00 0.00 31.96 3.33
2067 2294 6.573725 CACAAAGTAGCTTTATGAACGACAAC 59.426 38.462 0.00 0.00 30.39 3.32
2068 2295 6.655062 CACAAAGTAGCTTTATGAACGACAA 58.345 36.000 0.00 0.00 30.39 3.18
2069 2296 5.333798 GCACAAAGTAGCTTTATGAACGACA 60.334 40.000 4.33 0.00 30.39 4.35
2070 2297 5.080068 GCACAAAGTAGCTTTATGAACGAC 58.920 41.667 4.33 0.00 30.39 4.34
2071 2298 4.994852 AGCACAAAGTAGCTTTATGAACGA 59.005 37.500 4.33 0.00 38.01 3.85
2072 2299 5.283060 AGCACAAAGTAGCTTTATGAACG 57.717 39.130 4.33 0.00 38.01 3.95
2073 2300 7.095187 ACAGTAGCACAAAGTAGCTTTATGAAC 60.095 37.037 4.33 2.21 42.05 3.18
2074 2301 6.934645 ACAGTAGCACAAAGTAGCTTTATGAA 59.065 34.615 4.33 0.00 42.05 2.57
2075 2302 6.464222 ACAGTAGCACAAAGTAGCTTTATGA 58.536 36.000 4.33 0.00 42.05 2.15
2076 2303 6.727824 ACAGTAGCACAAAGTAGCTTTATG 57.272 37.500 0.00 0.00 42.05 1.90
2077 2304 8.311836 TCTTACAGTAGCACAAAGTAGCTTTAT 58.688 33.333 0.00 0.00 42.05 1.40
2078 2305 7.597743 GTCTTACAGTAGCACAAAGTAGCTTTA 59.402 37.037 0.00 0.00 42.05 1.85
2079 2306 6.424207 GTCTTACAGTAGCACAAAGTAGCTTT 59.576 38.462 0.00 0.00 42.05 3.51
2080 2307 5.927115 GTCTTACAGTAGCACAAAGTAGCTT 59.073 40.000 0.00 0.00 42.05 3.74
2081 2308 5.010719 TGTCTTACAGTAGCACAAAGTAGCT 59.989 40.000 0.00 0.00 44.55 3.32
2082 2309 5.227908 TGTCTTACAGTAGCACAAAGTAGC 58.772 41.667 0.00 0.00 0.00 3.58
2083 2310 7.148573 CCAATGTCTTACAGTAGCACAAAGTAG 60.149 40.741 0.00 0.00 0.00 2.57
2084 2311 6.649141 CCAATGTCTTACAGTAGCACAAAGTA 59.351 38.462 0.00 0.00 0.00 2.24
2085 2312 5.470098 CCAATGTCTTACAGTAGCACAAAGT 59.530 40.000 0.00 0.00 0.00 2.66
2086 2313 5.700832 TCCAATGTCTTACAGTAGCACAAAG 59.299 40.000 0.00 0.00 0.00 2.77
2087 2314 5.616270 TCCAATGTCTTACAGTAGCACAAA 58.384 37.500 0.00 0.00 0.00 2.83
2088 2315 5.222079 TCCAATGTCTTACAGTAGCACAA 57.778 39.130 0.00 0.00 0.00 3.33
2089 2316 4.882842 TCCAATGTCTTACAGTAGCACA 57.117 40.909 0.00 0.00 0.00 4.57
2090 2317 6.816640 TGTAATCCAATGTCTTACAGTAGCAC 59.183 38.462 2.14 0.00 32.09 4.40
2091 2318 6.941857 TGTAATCCAATGTCTTACAGTAGCA 58.058 36.000 2.14 0.00 32.09 3.49
2092 2319 8.438676 AATGTAATCCAATGTCTTACAGTAGC 57.561 34.615 9.60 0.00 38.39 3.58
2095 2322 9.520515 AGAAAATGTAATCCAATGTCTTACAGT 57.479 29.630 9.60 5.59 38.39 3.55
2134 2361 9.987726 TCTGATCACACTCCTTGATATCTATAT 57.012 33.333 3.98 0.00 33.70 0.86
2135 2362 9.813826 TTCTGATCACACTCCTTGATATCTATA 57.186 33.333 3.98 0.00 33.70 1.31
2136 2363 8.718158 TTCTGATCACACTCCTTGATATCTAT 57.282 34.615 3.98 0.00 33.70 1.98
2137 2364 8.539117 TTTCTGATCACACTCCTTGATATCTA 57.461 34.615 3.98 0.00 33.70 1.98
2138 2365 7.344093 TCTTTCTGATCACACTCCTTGATATCT 59.656 37.037 3.98 0.00 33.70 1.98
2139 2366 7.495901 TCTTTCTGATCACACTCCTTGATATC 58.504 38.462 0.00 0.00 33.70 1.63
2140 2367 7.429374 TCTTTCTGATCACACTCCTTGATAT 57.571 36.000 0.00 0.00 33.70 1.63
2141 2368 6.857437 TCTTTCTGATCACACTCCTTGATA 57.143 37.500 0.00 0.00 33.70 2.15
2142 2369 5.752036 TCTTTCTGATCACACTCCTTGAT 57.248 39.130 0.00 0.00 36.37 2.57
2143 2370 5.305386 TCTTCTTTCTGATCACACTCCTTGA 59.695 40.000 0.00 0.00 0.00 3.02
2144 2371 5.545588 TCTTCTTTCTGATCACACTCCTTG 58.454 41.667 0.00 0.00 0.00 3.61
2145 2372 5.815233 TCTTCTTTCTGATCACACTCCTT 57.185 39.130 0.00 0.00 0.00 3.36
2146 2373 5.070981 TGTTCTTCTTTCTGATCACACTCCT 59.929 40.000 0.00 0.00 0.00 3.69
2147 2374 5.300752 TGTTCTTCTTTCTGATCACACTCC 58.699 41.667 0.00 0.00 0.00 3.85
2148 2375 6.128336 CCATGTTCTTCTTTCTGATCACACTC 60.128 42.308 0.00 0.00 0.00 3.51
2149 2376 5.704515 CCATGTTCTTCTTTCTGATCACACT 59.295 40.000 0.00 0.00 0.00 3.55
2150 2377 5.702670 TCCATGTTCTTCTTTCTGATCACAC 59.297 40.000 0.00 0.00 0.00 3.82
2151 2378 5.868454 TCCATGTTCTTCTTTCTGATCACA 58.132 37.500 0.00 0.00 0.00 3.58
2152 2379 6.373774 ACATCCATGTTCTTCTTTCTGATCAC 59.626 38.462 0.00 0.00 37.90 3.06
2153 2380 6.479006 ACATCCATGTTCTTCTTTCTGATCA 58.521 36.000 0.00 0.00 37.90 2.92
2154 2381 6.998968 ACATCCATGTTCTTCTTTCTGATC 57.001 37.500 0.00 0.00 37.90 2.92
2182 2409 0.456628 GGGTAGTTCCTCGCAGTCTC 59.543 60.000 0.00 0.00 36.25 3.36
2247 2474 4.314440 GCAGCCGCCGGATATGGA 62.314 66.667 7.68 0.00 0.00 3.41
2274 2501 5.008217 TCAGTTGTTGCATACCTGTGTTTAC 59.992 40.000 0.00 0.00 0.00 2.01
2302 2531 8.082242 GGTATGCCTGAAATAATTACCATGAAC 58.918 37.037 0.00 0.00 0.00 3.18
2309 2538 7.759489 TGGATGGTATGCCTGAAATAATTAC 57.241 36.000 0.16 0.00 35.27 1.89
2416 2649 2.764314 GCATGGGCCACTAGCAACG 61.764 63.158 9.28 0.00 46.50 4.10
2477 2710 3.565307 TCTTTCCCTTGTGTTGCTCAAT 58.435 40.909 0.00 0.00 0.00 2.57
2520 2753 6.083098 TCAACAATTGTCCACGATTTTGAT 57.917 33.333 12.39 0.00 30.71 2.57
2554 2787 2.216898 GCAATGTCTGCCCTATGAGAC 58.783 52.381 0.00 0.00 46.13 3.36
2593 2826 2.087646 GCCTTTTGTAGCTCCTCCAAG 58.912 52.381 0.00 0.00 0.00 3.61
2596 2829 0.328258 TGGCCTTTTGTAGCTCCTCC 59.672 55.000 3.32 0.00 0.00 4.30
2634 2867 2.050350 CCTCCACCGAGCCTACGAA 61.050 63.158 0.00 0.00 34.49 3.85
2791 3024 5.345702 CAACATCCATGGAGCTTTACAATG 58.654 41.667 21.33 12.26 0.00 2.82
2856 3089 2.092323 GGTCACTAAGGGTTCCATTGC 58.908 52.381 0.00 0.00 0.00 3.56
2914 3147 4.404394 TCACTTGCGATCCTTAACCTATCA 59.596 41.667 0.00 0.00 0.00 2.15
2930 3163 3.192212 AGAGCTTTGCCTATTTCACTTGC 59.808 43.478 0.00 0.00 0.00 4.01
2955 3188 5.930569 ACTGTTACGGAAGAATGAAGGTAAC 59.069 40.000 0.00 5.25 39.84 2.50
2994 3227 4.524802 ATGTTGGAAGGCTTGATATCCA 57.475 40.909 3.46 1.81 40.10 3.41
2995 3228 5.625150 AGTATGTTGGAAGGCTTGATATCC 58.375 41.667 3.46 0.00 0.00 2.59
3044 3277 4.397417 CCTCGAAGCTCCAAAATCTGAAAT 59.603 41.667 0.00 0.00 0.00 2.17
3148 3384 1.226491 CGTTAGGCGTCCCGTGTAG 60.226 63.158 0.00 0.00 35.76 2.74
3170 3406 6.607600 ACTCCAAAGCTATAGACATCACTACA 59.392 38.462 3.21 0.00 0.00 2.74
3342 3579 6.463995 AGATAGCTACTTCTTCCACTTCAG 57.536 41.667 0.00 0.00 0.00 3.02
3584 3822 4.141620 ACCGAGGATATCTTGCAGACAAAT 60.142 41.667 2.05 0.00 34.74 2.32
3630 3868 8.390354 GCAGGATTGCTCCAAAATAAATAAAAC 58.610 33.333 0.00 0.00 46.95 2.43
3631 3869 8.491331 GCAGGATTGCTCCAAAATAAATAAAA 57.509 30.769 0.00 0.00 46.95 1.52
3761 4206 4.641541 TGAAGGTAATGCATGTCCAGAATG 59.358 41.667 18.52 0.00 0.00 2.67
3778 4223 4.098894 AGGGATCAATGCAAATTGAAGGT 58.901 39.130 6.82 0.00 42.95 3.50
3924 4374 9.295214 CACAAATACAAAATATAAATGGTGCGA 57.705 29.630 0.00 0.00 0.00 5.10
3949 4399 3.701205 TCATTGCTCTTTAGGCTGTCA 57.299 42.857 0.00 0.00 0.00 3.58
3958 4408 9.468532 GACTTAGTCAAAAATTCATTGCTCTTT 57.531 29.630 7.59 0.00 32.09 2.52
3981 4431 5.810080 ACAAACTAAGCTCCTAGTTGACT 57.190 39.130 10.81 0.00 40.47 3.41
3990 4440 3.919197 GTCAGACGTACAAACTAAGCTCC 59.081 47.826 0.00 0.00 0.00 4.70
3994 4444 5.770417 AGGAAGTCAGACGTACAAACTAAG 58.230 41.667 1.15 0.00 0.00 2.18
4005 4455 1.269778 TGTCAGCAAGGAAGTCAGACG 60.270 52.381 0.00 0.00 0.00 4.18
4019 4469 6.422776 TTTAGGAGATTCGATTTTGTCAGC 57.577 37.500 0.00 0.00 0.00 4.26
4020 4470 9.282247 CATTTTTAGGAGATTCGATTTTGTCAG 57.718 33.333 0.00 0.00 0.00 3.51
4023 4473 7.970614 GCTCATTTTTAGGAGATTCGATTTTGT 59.029 33.333 0.00 0.00 32.87 2.83
4040 4490 0.112412 AGGACCGGGTGCTCATTTTT 59.888 50.000 16.20 0.00 24.24 1.94
4041 4491 0.112412 AAGGACCGGGTGCTCATTTT 59.888 50.000 22.08 2.56 31.83 1.82
4043 4493 1.002134 CAAGGACCGGGTGCTCATT 60.002 57.895 22.08 3.38 31.83 2.57
4046 4496 1.153349 GATCAAGGACCGGGTGCTC 60.153 63.158 22.08 5.78 31.83 4.26
4047 4497 1.613630 AGATCAAGGACCGGGTGCT 60.614 57.895 16.20 16.20 35.27 4.40
4055 4505 0.543749 CCTGTGGGGAGATCAAGGAC 59.456 60.000 0.00 0.00 37.23 3.85
4070 4520 2.387757 GAGAAGATCTGGCTCTCCTGT 58.612 52.381 15.22 0.00 33.50 4.00
4073 4523 1.786937 TGGAGAAGATCTGGCTCTCC 58.213 55.000 25.80 25.80 45.22 3.71
4078 4528 1.606737 GGCGTATGGAGAAGATCTGGC 60.607 57.143 0.00 0.00 0.00 4.85
4103 4553 7.660617 AGAATCTGTAATATTGATGCAGACTGG 59.339 37.037 4.26 0.00 38.74 4.00
4104 4554 8.604640 AGAATCTGTAATATTGATGCAGACTG 57.395 34.615 12.64 0.00 38.74 3.51
4119 4569 6.848069 TCTTCCCTCCAAAAAGAATCTGTAA 58.152 36.000 0.00 0.00 0.00 2.41
4130 4580 5.894393 TGTTGTGTTAATCTTCCCTCCAAAA 59.106 36.000 0.00 0.00 0.00 2.44
4142 4592 5.041951 TGGCGAGAAATGTTGTGTTAATC 57.958 39.130 0.00 0.00 0.00 1.75
4145 4595 4.902443 TTTGGCGAGAAATGTTGTGTTA 57.098 36.364 0.00 0.00 0.00 2.41
4146 4596 3.791973 TTTGGCGAGAAATGTTGTGTT 57.208 38.095 0.00 0.00 0.00 3.32
4147 4597 3.791973 TTTTGGCGAGAAATGTTGTGT 57.208 38.095 0.00 0.00 0.00 3.72
4166 4616 6.152661 TGAGGTGTTGTGTTGATCTTCTTTTT 59.847 34.615 0.00 0.00 0.00 1.94
4167 4617 5.652014 TGAGGTGTTGTGTTGATCTTCTTTT 59.348 36.000 0.00 0.00 0.00 2.27
4168 4618 5.066505 GTGAGGTGTTGTGTTGATCTTCTTT 59.933 40.000 0.00 0.00 0.00 2.52
4169 4619 4.576463 GTGAGGTGTTGTGTTGATCTTCTT 59.424 41.667 0.00 0.00 0.00 2.52
4170 4620 4.130118 GTGAGGTGTTGTGTTGATCTTCT 58.870 43.478 0.00 0.00 0.00 2.85
4171 4621 3.876914 TGTGAGGTGTTGTGTTGATCTTC 59.123 43.478 0.00 0.00 0.00 2.87
4172 4622 3.627577 GTGTGAGGTGTTGTGTTGATCTT 59.372 43.478 0.00 0.00 0.00 2.40
4173 4623 3.206150 GTGTGAGGTGTTGTGTTGATCT 58.794 45.455 0.00 0.00 0.00 2.75
4174 4624 2.032894 CGTGTGAGGTGTTGTGTTGATC 60.033 50.000 0.00 0.00 0.00 2.92
4175 4625 1.939934 CGTGTGAGGTGTTGTGTTGAT 59.060 47.619 0.00 0.00 0.00 2.57
4176 4626 1.338294 ACGTGTGAGGTGTTGTGTTGA 60.338 47.619 0.00 0.00 0.00 3.18
4187 4637 1.616865 TCCTTACTTCCACGTGTGAGG 59.383 52.381 15.65 13.70 40.13 3.86
4188 4638 3.005472 TCTTCCTTACTTCCACGTGTGAG 59.995 47.826 15.65 13.71 0.00 3.51
4193 4643 2.561858 GTCCTCTTCCTTACTTCCACGT 59.438 50.000 0.00 0.00 0.00 4.49
4243 4693 6.072673 ACCTCTAAAAAGAAGTATTTGTGCCG 60.073 38.462 0.00 0.00 0.00 5.69
4244 4694 7.084486 CACCTCTAAAAAGAAGTATTTGTGCC 58.916 38.462 0.00 0.00 0.00 5.01
4250 4700 8.557029 CGTGAAACACCTCTAAAAAGAAGTATT 58.443 33.333 0.00 0.00 35.74 1.89
4257 4707 5.524646 TGTACCGTGAAACACCTCTAAAAAG 59.475 40.000 0.00 0.00 35.74 2.27
4270 4721 2.206750 GCTGTGAAGTGTACCGTGAAA 58.793 47.619 0.00 0.00 0.00 2.69
4273 4724 1.886861 GCGCTGTGAAGTGTACCGTG 61.887 60.000 0.00 0.00 0.00 4.94
4291 4743 2.170607 TGGAGATGCCCTTACTGTTAGC 59.829 50.000 0.00 0.00 34.97 3.09
4296 4748 1.066143 ACGTTGGAGATGCCCTTACTG 60.066 52.381 0.00 0.00 34.97 2.74
4314 4766 5.639506 AGTGTGTTCATTTTAGGAGATGACG 59.360 40.000 0.00 0.00 32.36 4.35
4316 4768 9.739276 AAATAGTGTGTTCATTTTAGGAGATGA 57.261 29.630 0.00 0.00 0.00 2.92
4321 4773 7.721842 TGGACAAATAGTGTGTTCATTTTAGGA 59.278 33.333 0.00 0.00 41.96 2.94
4322 4774 7.881142 TGGACAAATAGTGTGTTCATTTTAGG 58.119 34.615 0.00 0.00 41.96 2.69
4331 4783 4.761739 CAGTCCATGGACAAATAGTGTGTT 59.238 41.667 39.38 16.86 46.76 3.32
4347 4799 2.441001 GGATTGGTCCTGATCAGTCCAT 59.559 50.000 26.58 19.50 44.82 3.41
4348 4800 1.839994 GGATTGGTCCTGATCAGTCCA 59.160 52.381 24.03 24.03 44.82 4.02
4349 4801 1.202580 CGGATTGGTCCTGATCAGTCC 60.203 57.143 21.11 20.78 42.80 3.85
4350 4802 1.482593 ACGGATTGGTCCTGATCAGTC 59.517 52.381 21.11 13.17 42.73 3.51
4351 4803 1.208052 CACGGATTGGTCCTGATCAGT 59.792 52.381 21.11 1.20 42.73 3.41
4352 4804 1.473965 CCACGGATTGGTCCTGATCAG 60.474 57.143 16.24 16.24 42.73 2.90
4353 4805 0.541392 CCACGGATTGGTCCTGATCA 59.459 55.000 0.00 0.00 42.73 2.92
4354 4806 0.830648 TCCACGGATTGGTCCTGATC 59.169 55.000 0.00 0.00 46.97 2.92
4355 4807 0.541863 GTCCACGGATTGGTCCTGAT 59.458 55.000 0.00 0.00 46.97 2.90
4356 4808 0.834261 TGTCCACGGATTGGTCCTGA 60.834 55.000 0.00 0.00 46.97 3.86
4357 4809 0.673644 GTGTCCACGGATTGGTCCTG 60.674 60.000 0.00 0.00 46.97 3.86
4358 4810 0.836400 AGTGTCCACGGATTGGTCCT 60.836 55.000 0.00 0.00 46.97 3.85
4359 4811 0.673644 CAGTGTCCACGGATTGGTCC 60.674 60.000 0.00 0.00 46.97 4.46
4360 4812 0.320374 TCAGTGTCCACGGATTGGTC 59.680 55.000 0.00 0.00 46.97 4.02
4361 4813 0.984230 ATCAGTGTCCACGGATTGGT 59.016 50.000 7.16 0.00 46.97 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.