Multiple sequence alignment - TraesCS5D01G373300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G373300 chr5D 100.000 6089 0 0 1 6089 446758394 446764482 0.000000e+00 11245.0
1 TraesCS5D01G373300 chr5D 99.119 227 2 0 4087 4313 367670272 367670046 5.680000e-110 409.0
2 TraesCS5D01G373300 chr5D 99.115 226 2 0 4088 4313 412323524 412323299 2.040000e-109 407.0
3 TraesCS5D01G373300 chr5D 97.835 231 3 2 4080 4310 393806750 393806978 1.230000e-106 398.0
4 TraesCS5D01G373300 chr5B 93.372 3576 155 33 560 4090 544909292 544912830 0.000000e+00 5216.0
5 TraesCS5D01G373300 chr5B 90.252 1826 81 33 4306 6089 544912823 544914593 0.000000e+00 2296.0
6 TraesCS5D01G373300 chr5B 94.168 703 30 4 4306 5007 544985206 544985898 0.000000e+00 1061.0
7 TraesCS5D01G373300 chr5B 90.470 787 59 9 5071 5847 544989334 544990114 0.000000e+00 1024.0
8 TraesCS5D01G373300 chr5B 94.286 35 1 1 3865 3899 544985079 544985112 1.100000e-02 52.8
9 TraesCS5D01G373300 chr5A 91.582 2269 110 26 7 2255 564599535 564601742 0.000000e+00 3057.0
10 TraesCS5D01G373300 chr5A 95.066 1824 45 15 4306 6089 564603904 564605722 0.000000e+00 2828.0
11 TraesCS5D01G373300 chr5A 90.696 1838 100 28 4306 6089 564664872 564666692 0.000000e+00 2381.0
12 TraesCS5D01G373300 chr5A 93.791 1079 50 9 2734 3808 564602470 564603535 0.000000e+00 1605.0
13 TraesCS5D01G373300 chr5A 96.466 283 10 0 3808 4090 564603629 564603911 9.240000e-128 468.0
14 TraesCS5D01G373300 chr5A 90.141 284 21 3 2251 2527 564601997 564602280 4.490000e-96 363.0
15 TraesCS5D01G373300 chr5A 80.864 486 49 20 3622 4090 564664421 564664879 5.840000e-90 342.0
16 TraesCS5D01G373300 chr5A 96.842 95 3 0 2588 2682 564602374 564602468 6.320000e-35 159.0
17 TraesCS5D01G373300 chr7D 98.690 229 3 0 4085 4313 575192209 575192437 2.040000e-109 407.0
18 TraesCS5D01G373300 chr6D 99.115 226 2 0 4087 4312 91770335 91770560 2.040000e-109 407.0
19 TraesCS5D01G373300 chr6D 98.643 221 3 0 4090 4310 312766374 312766154 5.720000e-105 392.0
20 TraesCS5D01G373300 chr6D 97.778 225 5 0 4088 4312 453446593 453446817 7.400000e-104 388.0
21 TraesCS5D01G373300 chr4D 99.095 221 2 0 4090 4310 497017061 497016841 1.230000e-106 398.0
22 TraesCS5D01G373300 chr2D 98.230 226 3 1 4087 4312 314209974 314209750 1.590000e-105 394.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G373300 chr5D 446758394 446764482 6088 False 11245.000000 11245 100.000000 1 6089 1 chr5D.!!$F2 6088
1 TraesCS5D01G373300 chr5B 544909292 544914593 5301 False 3756.000000 5216 91.812000 560 6089 2 chr5B.!!$F1 5529
2 TraesCS5D01G373300 chr5B 544985079 544990114 5035 False 712.600000 1061 92.974667 3865 5847 3 chr5B.!!$F2 1982
3 TraesCS5D01G373300 chr5A 564599535 564605722 6187 False 1413.333333 3057 93.981333 7 6089 6 chr5A.!!$F1 6082
4 TraesCS5D01G373300 chr5A 564664421 564666692 2271 False 1361.500000 2381 85.780000 3622 6089 2 chr5A.!!$F2 2467

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
870 882 0.800239 TCCTTTCTCCCCCTCTTCCT 59.200 55.0 0.00 0.0 0.00 3.36 F
1728 1752 0.035176 TGGGGCACTACGTTTACCAC 59.965 55.0 0.00 0.0 0.00 4.16 F
2186 2221 0.823356 GTGGCTTCTTCACCCTTGCA 60.823 55.0 0.00 0.0 0.00 4.08 F
4108 4599 0.469892 AGGGCCAGTTCTTTTGGTGG 60.470 55.0 6.18 0.0 38.02 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 2769 0.108041 ACCCACGTAACTTATGCCCG 60.108 55.0 0.0 0.0 0.00 6.13 R
3674 4065 0.251297 ATGTCATGTGGTGGTGGTGG 60.251 55.0 0.0 0.0 0.00 4.61 R
4123 4614 0.106719 GTAGGGGGCAGCTTATTGCA 60.107 55.0 0.0 0.0 45.86 4.08 R
5098 9005 0.765135 TGAAAGGGGGAGTGACCGAA 60.765 55.0 0.0 0.0 40.11 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.629079 ATTTAGCTTATGCGGCCTTTATC 57.371 39.130 0.00 0.00 45.42 1.75
41 42 6.037610 GCGGCCTTTATCATAATTATCTGGAG 59.962 42.308 0.00 0.00 0.00 3.86
43 44 7.406104 GGCCTTTATCATAATTATCTGGAGGT 58.594 38.462 0.00 0.00 0.00 3.85
44 45 7.890655 GGCCTTTATCATAATTATCTGGAGGTT 59.109 37.037 0.00 0.00 0.00 3.50
45 46 8.951243 GCCTTTATCATAATTATCTGGAGGTTC 58.049 37.037 0.00 0.00 0.00 3.62
48 49 9.929180 TTTATCATAATTATCTGGAGGTTCTCG 57.071 33.333 0.00 0.00 0.00 4.04
49 50 6.978674 TCATAATTATCTGGAGGTTCTCGT 57.021 37.500 0.00 0.00 0.00 4.18
68 69 2.034558 CGTTCTTCATGCCAACCAAACT 59.965 45.455 0.00 0.00 0.00 2.66
85 86 5.192927 CCAAACTTGGCTGGAACATATAGA 58.807 41.667 0.00 0.00 42.21 1.98
86 87 5.297776 CCAAACTTGGCTGGAACATATAGAG 59.702 44.000 0.00 0.00 42.21 2.43
89 90 7.380423 AACTTGGCTGGAACATATAGAGTAT 57.620 36.000 0.00 0.00 38.20 2.12
90 91 8.492415 AACTTGGCTGGAACATATAGAGTATA 57.508 34.615 0.00 0.00 38.20 1.47
91 92 8.492415 ACTTGGCTGGAACATATAGAGTATAA 57.508 34.615 0.00 0.00 38.20 0.98
92 93 8.934697 ACTTGGCTGGAACATATAGAGTATAAA 58.065 33.333 0.00 0.00 38.20 1.40
93 94 9.778741 CTTGGCTGGAACATATAGAGTATAAAA 57.221 33.333 0.00 0.00 38.20 1.52
146 154 9.093970 GTTTGCTTCCTTTTAAACTAACAACAT 57.906 29.630 0.00 0.00 32.00 2.71
157 165 8.829514 TTAAACTAACAACATCACAAGTTTCG 57.170 30.769 1.86 0.00 38.00 3.46
158 166 6.671614 AACTAACAACATCACAAGTTTCGA 57.328 33.333 0.00 0.00 0.00 3.71
159 167 6.044512 ACTAACAACATCACAAGTTTCGAC 57.955 37.500 0.00 0.00 0.00 4.20
160 168 4.955925 AACAACATCACAAGTTTCGACA 57.044 36.364 0.00 0.00 0.00 4.35
161 169 5.499139 AACAACATCACAAGTTTCGACAT 57.501 34.783 0.00 0.00 0.00 3.06
162 170 6.612247 AACAACATCACAAGTTTCGACATA 57.388 33.333 0.00 0.00 0.00 2.29
222 231 1.339151 GGGCACTAGAGGTTCTGGTTG 60.339 57.143 0.00 0.00 35.96 3.77
234 243 3.151554 GTTCTGGTTGGGACGGTAAATT 58.848 45.455 0.00 0.00 0.00 1.82
256 265 4.385825 TCTGACTCAAAATGCCTACGTTT 58.614 39.130 0.00 0.00 36.55 3.60
260 269 3.317993 ACTCAAAATGCCTACGTTTGCTT 59.682 39.130 0.00 0.00 35.18 3.91
273 282 4.060205 ACGTTTGCTTACAACGGACTAAT 58.940 39.130 9.74 0.00 34.87 1.73
275 284 4.843984 CGTTTGCTTACAACGGACTAATTG 59.156 41.667 0.00 0.00 34.87 2.32
276 285 5.559417 CGTTTGCTTACAACGGACTAATTGT 60.559 40.000 0.00 0.00 41.77 2.71
277 286 5.351233 TTGCTTACAACGGACTAATTGTG 57.649 39.130 0.00 0.00 39.36 3.33
278 287 4.633175 TGCTTACAACGGACTAATTGTGA 58.367 39.130 0.00 0.00 39.36 3.58
279 288 5.242434 TGCTTACAACGGACTAATTGTGAT 58.758 37.500 0.00 0.00 39.36 3.06
281 290 5.581085 GCTTACAACGGACTAATTGTGATCT 59.419 40.000 0.00 0.00 39.36 2.75
284 293 6.481954 ACAACGGACTAATTGTGATCTTTC 57.518 37.500 0.00 0.00 37.64 2.62
285 294 6.231211 ACAACGGACTAATTGTGATCTTTCT 58.769 36.000 0.00 0.00 37.64 2.52
286 295 6.369065 ACAACGGACTAATTGTGATCTTTCTC 59.631 38.462 0.00 0.00 37.64 2.87
291 301 9.098355 CGGACTAATTGTGATCTTTCTCATAAA 57.902 33.333 0.00 0.00 31.30 1.40
326 336 2.416893 GGGCTCGAATGTTCTTCTGTTC 59.583 50.000 0.00 0.00 0.00 3.18
327 337 2.416893 GGCTCGAATGTTCTTCTGTTCC 59.583 50.000 0.00 0.00 0.00 3.62
328 338 3.067106 GCTCGAATGTTCTTCTGTTCCA 58.933 45.455 0.00 0.00 0.00 3.53
329 339 3.498397 GCTCGAATGTTCTTCTGTTCCAA 59.502 43.478 0.00 0.00 0.00 3.53
330 340 4.611581 GCTCGAATGTTCTTCTGTTCCAAC 60.612 45.833 0.00 0.00 0.00 3.77
331 341 3.813166 TCGAATGTTCTTCTGTTCCAACC 59.187 43.478 0.00 0.00 0.00 3.77
332 342 3.363970 CGAATGTTCTTCTGTTCCAACCG 60.364 47.826 0.00 0.00 0.00 4.44
333 343 2.992124 TGTTCTTCTGTTCCAACCGA 57.008 45.000 0.00 0.00 0.00 4.69
334 344 3.269538 TGTTCTTCTGTTCCAACCGAA 57.730 42.857 0.00 0.00 32.44 4.30
335 345 3.611970 TGTTCTTCTGTTCCAACCGAAA 58.388 40.909 0.00 0.00 32.90 3.46
336 346 4.204012 TGTTCTTCTGTTCCAACCGAAAT 58.796 39.130 0.00 0.00 32.90 2.17
337 347 4.642885 TGTTCTTCTGTTCCAACCGAAATT 59.357 37.500 0.00 0.00 32.90 1.82
338 348 5.823570 TGTTCTTCTGTTCCAACCGAAATTA 59.176 36.000 0.00 0.00 32.90 1.40
339 349 6.319152 TGTTCTTCTGTTCCAACCGAAATTAA 59.681 34.615 0.00 0.00 32.90 1.40
356 366 6.605471 AAATTAACCAAGATCCCAACCTTC 57.395 37.500 0.00 0.00 0.00 3.46
370 380 1.418334 ACCTTCTCTCAGCACACACT 58.582 50.000 0.00 0.00 0.00 3.55
415 426 3.491342 TGGCTAGGAGCTAGTACATCTG 58.509 50.000 0.00 0.00 41.99 2.90
473 484 2.960384 CAGCCCCAGCATAATCAATCAA 59.040 45.455 0.00 0.00 43.56 2.57
474 485 3.576982 CAGCCCCAGCATAATCAATCAAT 59.423 43.478 0.00 0.00 43.56 2.57
475 486 3.830755 AGCCCCAGCATAATCAATCAATC 59.169 43.478 0.00 0.00 43.56 2.67
476 487 3.575256 GCCCCAGCATAATCAATCAATCA 59.425 43.478 0.00 0.00 39.53 2.57
477 488 4.039488 GCCCCAGCATAATCAATCAATCAA 59.961 41.667 0.00 0.00 39.53 2.57
482 493 7.713507 CCCAGCATAATCAATCAATCAATGTTT 59.286 33.333 0.00 0.00 0.00 2.83
514 525 7.728083 TCCCAAGATCCATTTTGTTTTCTCTTA 59.272 33.333 0.00 0.00 0.00 2.10
522 533 8.802267 TCCATTTTGTTTTCTCTTAATAGGGTG 58.198 33.333 0.00 0.00 0.00 4.61
523 534 8.034804 CCATTTTGTTTTCTCTTAATAGGGTGG 58.965 37.037 0.00 0.00 0.00 4.61
524 535 7.533289 TTTTGTTTTCTCTTAATAGGGTGGG 57.467 36.000 0.00 0.00 0.00 4.61
525 536 5.853572 TGTTTTCTCTTAATAGGGTGGGT 57.146 39.130 0.00 0.00 0.00 4.51
557 568 4.329545 TGTGGAGAACCGGCTGGC 62.330 66.667 12.89 0.00 39.70 4.85
558 569 4.021925 GTGGAGAACCGGCTGGCT 62.022 66.667 12.89 0.00 39.70 4.75
562 573 3.249189 AGAACCGGCTGGCTGGAA 61.249 61.111 25.13 0.00 45.10 3.53
566 577 4.033776 CCGGCTGGCTGGAAGGAA 62.034 66.667 14.76 0.00 45.10 3.36
567 578 2.437359 CGGCTGGCTGGAAGGAAG 60.437 66.667 0.00 0.00 0.00 3.46
568 579 2.044551 GGCTGGCTGGAAGGAAGG 60.045 66.667 0.00 0.00 0.00 3.46
569 580 2.606587 GGCTGGCTGGAAGGAAGGA 61.607 63.158 0.00 0.00 0.00 3.36
866 878 1.307430 GCCTCCTTTCTCCCCCTCT 60.307 63.158 0.00 0.00 0.00 3.69
867 879 0.916845 GCCTCCTTTCTCCCCCTCTT 60.917 60.000 0.00 0.00 0.00 2.85
868 880 1.208706 CCTCCTTTCTCCCCCTCTTC 58.791 60.000 0.00 0.00 0.00 2.87
869 881 1.208706 CTCCTTTCTCCCCCTCTTCC 58.791 60.000 0.00 0.00 0.00 3.46
870 882 0.800239 TCCTTTCTCCCCCTCTTCCT 59.200 55.000 0.00 0.00 0.00 3.36
871 883 1.208706 CCTTTCTCCCCCTCTTCCTC 58.791 60.000 0.00 0.00 0.00 3.71
893 905 2.036098 TCCTTCCGTGCCGGTAGA 59.964 61.111 17.56 9.24 45.08 2.59
1010 1026 2.112297 GGTTGACAGCCGAACCCA 59.888 61.111 0.00 0.00 36.39 4.51
1011 1027 1.966451 GGTTGACAGCCGAACCCAG 60.966 63.158 0.00 0.00 36.39 4.45
1012 1028 2.281484 TTGACAGCCGAACCCAGC 60.281 61.111 0.00 0.00 0.00 4.85
1013 1029 3.842925 TTGACAGCCGAACCCAGCC 62.843 63.158 0.00 0.00 0.00 4.85
1082 1105 3.827898 GCTGCTACTCCGCCTCGT 61.828 66.667 0.00 0.00 0.00 4.18
1084 1107 2.045242 TGCTACTCCGCCTCGTCT 60.045 61.111 0.00 0.00 0.00 4.18
1453 1476 4.660938 GCCAACCCCAACCTCGCT 62.661 66.667 0.00 0.00 0.00 4.93
1541 1564 2.357517 GGTGAGGACACGGCACTG 60.358 66.667 0.00 0.00 46.77 3.66
1587 1610 8.698486 TGAAAATTTCACTGACGATCAGATGCT 61.698 37.037 17.99 0.00 46.84 3.79
1595 1618 3.070590 TGACGATCAGATGCTGGATGAAT 59.929 43.478 0.00 0.00 31.51 2.57
1628 1652 1.937278 TGTGCTGCATTTTGGTTGTG 58.063 45.000 5.27 0.00 0.00 3.33
1679 1703 6.659668 TGCATCACTCAGTTTACTCTAGTAGT 59.340 38.462 0.00 0.00 42.62 2.73
1681 1705 7.680113 GCATCACTCAGTTTACTCTAGTAGTCC 60.680 44.444 0.00 0.00 39.80 3.85
1728 1752 0.035176 TGGGGCACTACGTTTACCAC 59.965 55.000 0.00 0.00 0.00 4.16
1818 1842 3.437845 GCATACTGCGGCAATTACG 57.562 52.632 3.44 0.00 31.71 3.18
1840 1864 5.358725 ACGGAATCAGGTTGTTTGTAACTTT 59.641 36.000 0.00 0.00 0.00 2.66
1842 1866 6.416750 CGGAATCAGGTTGTTTGTAACTTTTC 59.583 38.462 0.00 0.00 0.00 2.29
1843 1867 7.489160 GGAATCAGGTTGTTTGTAACTTTTCT 58.511 34.615 0.00 0.00 0.00 2.52
1850 1874 6.316319 GTTGTTTGTAACTTTTCTTCCACGA 58.684 36.000 0.00 0.00 0.00 4.35
1858 1882 5.796350 ACTTTTCTTCCACGATTAATCCG 57.204 39.130 9.87 7.65 0.00 4.18
1861 1885 3.447918 TCTTCCACGATTAATCCGGAC 57.552 47.619 6.12 0.00 0.00 4.79
1873 1897 6.905076 CGATTAATCCGGACATACACTTTTTG 59.095 38.462 6.12 0.00 0.00 2.44
1876 1900 6.399639 AATCCGGACATACACTTTTTGTTT 57.600 33.333 6.12 0.00 39.91 2.83
1882 1906 8.026607 CCGGACATACACTTTTTGTTTATCATT 58.973 33.333 0.00 0.00 39.91 2.57
1883 1907 8.849490 CGGACATACACTTTTTGTTTATCATTG 58.151 33.333 0.00 0.00 39.91 2.82
1904 1928 2.864343 GGTTACTATACTGCCTTGTGCG 59.136 50.000 0.00 0.00 45.60 5.34
1920 1944 3.261580 TGTGCGAATGAATAGTGTGAGG 58.738 45.455 0.00 0.00 0.00 3.86
1928 1952 6.368791 CGAATGAATAGTGTGAGGAAGTGAAA 59.631 38.462 0.00 0.00 0.00 2.69
1929 1953 7.412346 CGAATGAATAGTGTGAGGAAGTGAAAG 60.412 40.741 0.00 0.00 0.00 2.62
1930 1954 6.419484 TGAATAGTGTGAGGAAGTGAAAGA 57.581 37.500 0.00 0.00 0.00 2.52
1936 1964 7.736447 AGTGTGAGGAAGTGAAAGAAATTAG 57.264 36.000 0.00 0.00 0.00 1.73
1945 1973 8.755941 GGAAGTGAAAGAAATTAGAACTTTTGC 58.244 33.333 0.00 0.00 34.63 3.68
1947 1975 8.862550 AGTGAAAGAAATTAGAACTTTTGCTG 57.137 30.769 0.00 0.00 34.63 4.41
1955 1983 8.947055 AAATTAGAACTTTTGCTGTTGTCATT 57.053 26.923 0.00 0.00 0.00 2.57
1967 1995 8.659925 TTGCTGTTGTCATTTTGAAATATTGT 57.340 26.923 0.00 0.00 0.00 2.71
1974 2002 9.829507 TTGTCATTTTGAAATATTGTCCTTGTT 57.170 25.926 0.00 0.00 0.00 2.83
1991 2026 4.884164 CCTTGTTATCATCAAACTCCCTCC 59.116 45.833 0.00 0.00 0.00 4.30
2013 2048 4.401519 CCACTCTGATCCTTGCATTTTGAT 59.598 41.667 0.00 0.00 0.00 2.57
2015 2050 5.124936 CACTCTGATCCTTGCATTTTGATGA 59.875 40.000 0.00 0.00 0.00 2.92
2033 2068 5.680619 TGATGACTTGTAACAGGTGAACTT 58.319 37.500 0.00 0.00 0.00 2.66
2131 2166 2.158813 TCAGTGTTCCTTCCAAGGTGAC 60.159 50.000 5.24 6.49 46.54 3.67
2186 2221 0.823356 GTGGCTTCTTCACCCTTGCA 60.823 55.000 0.00 0.00 0.00 4.08
2189 2224 0.877743 GCTTCTTCACCCTTGCACTC 59.122 55.000 0.00 0.00 0.00 3.51
2195 2230 1.053835 TCACCCTTGCACTCACCTCA 61.054 55.000 0.00 0.00 0.00 3.86
2383 2681 7.327761 GCACTTCATATTAAGCTGCAATTATGG 59.672 37.037 1.02 0.00 35.46 2.74
2392 2690 8.925161 TTAAGCTGCAATTATGGATTTACAAC 57.075 30.769 1.02 0.00 0.00 3.32
2398 2696 7.598278 TGCAATTATGGATTTACAACGTTCTT 58.402 30.769 0.00 0.00 0.00 2.52
2471 2769 4.340381 CCCAGACCTTTCATTTCATCCATC 59.660 45.833 0.00 0.00 0.00 3.51
2485 2783 2.519377 TCCATCGGGCATAAGTTACG 57.481 50.000 0.00 0.00 0.00 3.18
2543 2847 7.550906 AGCTTCCTTATCAACATCTTAACAGTC 59.449 37.037 0.00 0.00 0.00 3.51
2596 2901 7.011763 TCTCAATGATCTTGCTTAGTACATTGC 59.988 37.037 20.52 0.00 41.75 3.56
2683 3063 9.740239 TTTAATTTGAAATGCATCTCATCTAGC 57.260 29.630 2.98 0.00 33.40 3.42
2684 3064 7.584122 AATTTGAAATGCATCTCATCTAGCT 57.416 32.000 2.98 0.00 33.40 3.32
2686 3066 7.400599 TTTGAAATGCATCTCATCTAGCTTT 57.599 32.000 2.98 0.00 33.40 3.51
2687 3067 6.373186 TGAAATGCATCTCATCTAGCTTTG 57.627 37.500 0.00 0.00 33.40 2.77
2688 3068 5.884232 TGAAATGCATCTCATCTAGCTTTGT 59.116 36.000 0.00 0.00 33.40 2.83
2690 3070 7.553760 TGAAATGCATCTCATCTAGCTTTGTAA 59.446 33.333 0.00 0.00 33.40 2.41
2691 3071 6.857777 ATGCATCTCATCTAGCTTTGTAAC 57.142 37.500 0.00 0.00 0.00 2.50
2692 3072 5.982356 TGCATCTCATCTAGCTTTGTAACT 58.018 37.500 0.00 0.00 0.00 2.24
2693 3073 7.112452 TGCATCTCATCTAGCTTTGTAACTA 57.888 36.000 0.00 0.00 0.00 2.24
2694 3074 7.730084 TGCATCTCATCTAGCTTTGTAACTAT 58.270 34.615 0.00 0.00 0.00 2.12
2726 3106 4.858692 CGTTCAACTTTCCAATGCCTATTG 59.141 41.667 0.00 0.00 42.66 1.90
2755 3135 7.908453 ACTTATGGCTTTACTGAGTTTCTACT 58.092 34.615 0.00 0.00 37.31 2.57
2981 3361 9.565213 CAACTTTTGTGATCTCCTATCAAAATC 57.435 33.333 0.00 0.00 37.36 2.17
2984 3364 7.870509 TTTGTGATCTCCTATCAAAATCTGG 57.129 36.000 0.00 0.00 0.00 3.86
2988 3368 8.717717 TGTGATCTCCTATCAAAATCTGGTAAT 58.282 33.333 0.00 0.00 0.00 1.89
3020 3401 7.329226 ACATTGGAAAAATTAGAACTGCAATCG 59.671 33.333 0.00 0.00 0.00 3.34
3059 3441 8.463930 AAAACATTCAGACAGGAGTGATAAAA 57.536 30.769 0.00 0.00 0.00 1.52
3606 3997 1.474330 ACCTTCCATTCGCCATTTCC 58.526 50.000 0.00 0.00 0.00 3.13
3672 4063 2.525368 AGGAAAGGGTAAACATGCACC 58.475 47.619 0.00 0.00 0.00 5.01
3673 4064 2.158385 AGGAAAGGGTAAACATGCACCA 60.158 45.455 12.36 0.00 36.48 4.17
3674 4065 2.029380 GGAAAGGGTAAACATGCACCAC 60.029 50.000 12.36 4.03 36.48 4.16
3675 4066 1.627864 AAGGGTAAACATGCACCACC 58.372 50.000 12.36 6.07 36.48 4.61
3676 4067 0.480690 AGGGTAAACATGCACCACCA 59.519 50.000 12.36 0.00 36.48 4.17
3677 4068 0.601057 GGGTAAACATGCACCACCAC 59.399 55.000 12.36 0.00 36.48 4.16
3828 4314 8.316497 ACTGGAGATATGAGAGAGAAAATTCA 57.684 34.615 0.00 0.00 0.00 2.57
3980 4470 7.478520 ACTAGTTTTGTAGCACACACTTTAG 57.521 36.000 0.00 0.00 36.69 1.85
4084 4575 6.226052 CAGATATATTGCCACTGTAAGAGCA 58.774 40.000 0.00 0.00 43.02 4.26
4086 4577 7.064371 CAGATATATTGCCACTGTAAGAGCATC 59.936 40.741 0.00 0.00 43.83 3.91
4099 4590 1.960417 GAGCATCTTAGGGCCAGTTC 58.040 55.000 6.18 0.00 0.00 3.01
4100 4591 1.488393 GAGCATCTTAGGGCCAGTTCT 59.512 52.381 6.18 0.00 0.00 3.01
4101 4592 1.918957 AGCATCTTAGGGCCAGTTCTT 59.081 47.619 6.18 0.00 0.00 2.52
4102 4593 2.310052 AGCATCTTAGGGCCAGTTCTTT 59.690 45.455 6.18 0.00 0.00 2.52
4103 4594 3.092301 GCATCTTAGGGCCAGTTCTTTT 58.908 45.455 6.18 0.00 0.00 2.27
4104 4595 3.119352 GCATCTTAGGGCCAGTTCTTTTG 60.119 47.826 6.18 0.00 0.00 2.44
4105 4596 3.154827 TCTTAGGGCCAGTTCTTTTGG 57.845 47.619 6.18 0.00 38.78 3.28
4106 4597 2.445525 TCTTAGGGCCAGTTCTTTTGGT 59.554 45.455 6.18 0.00 38.02 3.67
4107 4598 2.286365 TAGGGCCAGTTCTTTTGGTG 57.714 50.000 6.18 0.00 38.02 4.17
4108 4599 0.469892 AGGGCCAGTTCTTTTGGTGG 60.470 55.000 6.18 0.00 38.02 4.61
4113 4604 3.541996 CCAGTTCTTTTGGTGGCTTTT 57.458 42.857 0.00 0.00 0.00 2.27
4114 4605 4.664150 CCAGTTCTTTTGGTGGCTTTTA 57.336 40.909 0.00 0.00 0.00 1.52
4115 4606 4.620982 CCAGTTCTTTTGGTGGCTTTTAG 58.379 43.478 0.00 0.00 0.00 1.85
4116 4607 4.340950 CCAGTTCTTTTGGTGGCTTTTAGA 59.659 41.667 0.00 0.00 0.00 2.10
4117 4608 5.163457 CCAGTTCTTTTGGTGGCTTTTAGAA 60.163 40.000 0.00 0.00 0.00 2.10
4118 4609 6.462909 CCAGTTCTTTTGGTGGCTTTTAGAAT 60.463 38.462 0.00 0.00 0.00 2.40
4119 4610 7.255801 CCAGTTCTTTTGGTGGCTTTTAGAATA 60.256 37.037 0.00 0.00 0.00 1.75
4120 4611 8.141268 CAGTTCTTTTGGTGGCTTTTAGAATAA 58.859 33.333 0.00 0.00 0.00 1.40
4121 4612 8.360390 AGTTCTTTTGGTGGCTTTTAGAATAAG 58.640 33.333 0.00 0.00 0.00 1.73
4122 4613 6.687604 TCTTTTGGTGGCTTTTAGAATAAGC 58.312 36.000 0.00 0.00 45.61 3.09
4123 4614 6.493458 TCTTTTGGTGGCTTTTAGAATAAGCT 59.507 34.615 7.43 0.00 45.62 3.74
4124 4615 5.643379 TTGGTGGCTTTTAGAATAAGCTG 57.357 39.130 7.43 0.00 45.62 4.24
4125 4616 3.443681 TGGTGGCTTTTAGAATAAGCTGC 59.556 43.478 7.43 0.00 45.62 5.25
4126 4617 3.443681 GGTGGCTTTTAGAATAAGCTGCA 59.556 43.478 1.02 0.00 45.62 4.41
4127 4618 4.082245 GGTGGCTTTTAGAATAAGCTGCAA 60.082 41.667 1.02 0.00 45.62 4.08
4128 4619 5.394553 GGTGGCTTTTAGAATAAGCTGCAAT 60.395 40.000 1.02 0.00 45.62 3.56
4129 4620 6.183360 GGTGGCTTTTAGAATAAGCTGCAATA 60.183 38.462 1.02 0.00 45.62 1.90
4130 4621 7.257722 GTGGCTTTTAGAATAAGCTGCAATAA 58.742 34.615 1.02 0.00 45.62 1.40
4131 4622 7.433425 GTGGCTTTTAGAATAAGCTGCAATAAG 59.567 37.037 1.02 0.00 45.62 1.73
4132 4623 6.419116 GGCTTTTAGAATAAGCTGCAATAAGC 59.581 38.462 1.02 6.65 45.62 3.09
4139 4630 3.530067 CTGCAATAAGCTGCCCCC 58.470 61.111 0.00 0.00 45.94 5.40
4140 4631 1.076485 CTGCAATAAGCTGCCCCCT 60.076 57.895 0.00 0.00 45.94 4.79
4141 4632 0.183492 CTGCAATAAGCTGCCCCCTA 59.817 55.000 0.00 0.00 45.94 3.53
4142 4633 0.106719 TGCAATAAGCTGCCCCCTAC 60.107 55.000 0.00 0.00 45.94 3.18
4143 4634 0.823769 GCAATAAGCTGCCCCCTACC 60.824 60.000 0.00 0.00 41.15 3.18
4144 4635 0.846693 CAATAAGCTGCCCCCTACCT 59.153 55.000 0.00 0.00 0.00 3.08
4145 4636 2.054799 CAATAAGCTGCCCCCTACCTA 58.945 52.381 0.00 0.00 0.00 3.08
4146 4637 2.031495 ATAAGCTGCCCCCTACCTAG 57.969 55.000 0.00 0.00 0.00 3.02
4147 4638 0.763223 TAAGCTGCCCCCTACCTAGC 60.763 60.000 0.00 0.00 34.71 3.42
4148 4639 2.446802 GCTGCCCCCTACCTAGCT 60.447 66.667 0.00 0.00 0.00 3.32
4149 4640 2.073101 GCTGCCCCCTACCTAGCTT 61.073 63.158 0.00 0.00 0.00 3.74
4150 4641 0.763223 GCTGCCCCCTACCTAGCTTA 60.763 60.000 0.00 0.00 0.00 3.09
4151 4642 2.031495 CTGCCCCCTACCTAGCTTAT 57.969 55.000 0.00 0.00 0.00 1.73
4152 4643 2.339769 CTGCCCCCTACCTAGCTTATT 58.660 52.381 0.00 0.00 0.00 1.40
4153 4644 2.303311 CTGCCCCCTACCTAGCTTATTC 59.697 54.545 0.00 0.00 0.00 1.75
4154 4645 2.090153 TGCCCCCTACCTAGCTTATTCT 60.090 50.000 0.00 0.00 0.00 2.40
4155 4646 3.143359 TGCCCCCTACCTAGCTTATTCTA 59.857 47.826 0.00 0.00 0.00 2.10
4156 4647 3.770388 GCCCCCTACCTAGCTTATTCTAG 59.230 52.174 0.00 0.00 36.63 2.43
4157 4648 4.510567 GCCCCCTACCTAGCTTATTCTAGA 60.511 50.000 0.00 0.00 38.61 2.43
4158 4649 5.652324 CCCCCTACCTAGCTTATTCTAGAA 58.348 45.833 7.82 7.82 38.61 2.10
4159 4650 5.717654 CCCCCTACCTAGCTTATTCTAGAAG 59.282 48.000 11.53 0.00 38.61 2.85
4167 4658 3.886123 GCTTATTCTAGAAGCCCAACCA 58.114 45.455 11.53 0.00 42.90 3.67
4168 4659 4.270008 GCTTATTCTAGAAGCCCAACCAA 58.730 43.478 11.53 0.00 42.90 3.67
4169 4660 4.705023 GCTTATTCTAGAAGCCCAACCAAA 59.295 41.667 11.53 0.00 42.90 3.28
4170 4661 5.360999 GCTTATTCTAGAAGCCCAACCAAAT 59.639 40.000 11.53 0.00 42.90 2.32
4171 4662 6.127338 GCTTATTCTAGAAGCCCAACCAAATT 60.127 38.462 11.53 0.00 42.90 1.82
4172 4663 7.579531 GCTTATTCTAGAAGCCCAACCAAATTT 60.580 37.037 11.53 0.00 42.90 1.82
4173 4664 8.887264 TTATTCTAGAAGCCCAACCAAATTTA 57.113 30.769 11.53 0.00 0.00 1.40
4174 4665 7.978099 ATTCTAGAAGCCCAACCAAATTTAT 57.022 32.000 11.53 0.00 0.00 1.40
4175 4666 6.773976 TCTAGAAGCCCAACCAAATTTATG 57.226 37.500 0.00 0.00 0.00 1.90
4176 4667 6.252995 TCTAGAAGCCCAACCAAATTTATGT 58.747 36.000 0.00 0.00 0.00 2.29
4177 4668 5.823861 AGAAGCCCAACCAAATTTATGTT 57.176 34.783 0.00 0.00 0.00 2.71
4178 4669 6.186420 AGAAGCCCAACCAAATTTATGTTT 57.814 33.333 3.25 0.00 0.00 2.83
4179 4670 6.600388 AGAAGCCCAACCAAATTTATGTTTT 58.400 32.000 3.25 0.00 0.00 2.43
4180 4671 7.059788 AGAAGCCCAACCAAATTTATGTTTTT 58.940 30.769 3.25 0.00 0.00 1.94
4181 4672 8.214364 AGAAGCCCAACCAAATTTATGTTTTTA 58.786 29.630 3.25 0.00 0.00 1.52
4182 4673 7.977789 AGCCCAACCAAATTTATGTTTTTAG 57.022 32.000 3.25 0.00 0.00 1.85
4183 4674 7.740805 AGCCCAACCAAATTTATGTTTTTAGA 58.259 30.769 3.25 0.00 0.00 2.10
4184 4675 8.214364 AGCCCAACCAAATTTATGTTTTTAGAA 58.786 29.630 3.25 0.00 0.00 2.10
4185 4676 8.503196 GCCCAACCAAATTTATGTTTTTAGAAG 58.497 33.333 3.25 0.00 0.00 2.85
4186 4677 8.503196 CCCAACCAAATTTATGTTTTTAGAAGC 58.497 33.333 3.25 0.00 0.00 3.86
4187 4678 8.503196 CCAACCAAATTTATGTTTTTAGAAGCC 58.497 33.333 3.25 0.00 0.00 4.35
4188 4679 9.271828 CAACCAAATTTATGTTTTTAGAAGCCT 57.728 29.630 3.25 0.00 0.00 4.58
4200 4691 9.702494 TGTTTTTAGAAGCCTAGTAGTTAAGAC 57.298 33.333 0.00 0.00 0.00 3.01
4201 4692 9.926158 GTTTTTAGAAGCCTAGTAGTTAAGACT 57.074 33.333 0.00 0.00 39.97 3.24
4203 4694 9.924650 TTTTAGAAGCCTAGTAGTTAAGACTTG 57.075 33.333 0.00 0.00 37.33 3.16
4204 4695 8.874744 TTAGAAGCCTAGTAGTTAAGACTTGA 57.125 34.615 0.00 0.00 37.33 3.02
4205 4696 7.160547 AGAAGCCTAGTAGTTAAGACTTGAC 57.839 40.000 1.94 1.94 37.33 3.18
4206 4697 6.949463 AGAAGCCTAGTAGTTAAGACTTGACT 59.051 38.462 16.02 16.02 37.33 3.41
4207 4698 8.108364 AGAAGCCTAGTAGTTAAGACTTGACTA 58.892 37.037 14.15 14.15 37.33 2.59
4208 4699 8.647256 AAGCCTAGTAGTTAAGACTTGACTAA 57.353 34.615 18.46 6.43 34.13 2.24
4209 4700 8.826293 AGCCTAGTAGTTAAGACTTGACTAAT 57.174 34.615 19.74 19.74 34.13 1.73
4210 4701 9.917887 AGCCTAGTAGTTAAGACTTGACTAATA 57.082 33.333 18.46 19.22 34.13 0.98
4214 4705 8.826293 AGTAGTTAAGACTTGACTAATAGGCT 57.174 34.615 18.46 10.18 34.13 4.58
4215 4706 9.257428 AGTAGTTAAGACTTGACTAATAGGCTT 57.743 33.333 18.46 0.00 42.30 4.35
4243 4734 7.701539 AAAAGAAAATTTTGTTTGGGCTTCT 57.298 28.000 22.37 6.37 34.41 2.85
4244 4735 8.800370 AAAAGAAAATTTTGTTTGGGCTTCTA 57.200 26.923 22.37 0.00 34.41 2.10
4245 4736 8.437360 AAAGAAAATTTTGTTTGGGCTTCTAG 57.563 30.769 21.37 0.00 33.13 2.43
4246 4737 7.360113 AGAAAATTTTGTTTGGGCTTCTAGA 57.640 32.000 8.47 0.00 0.00 2.43
4247 4738 7.791029 AGAAAATTTTGTTTGGGCTTCTAGAA 58.209 30.769 8.47 4.81 0.00 2.10
4248 4739 8.432013 AGAAAATTTTGTTTGGGCTTCTAGAAT 58.568 29.630 8.47 0.00 0.00 2.40
4249 4740 9.705290 GAAAATTTTGTTTGGGCTTCTAGAATA 57.295 29.630 8.47 0.00 0.00 1.75
4251 4742 9.710900 AAATTTTGTTTGGGCTTCTAGAATAAG 57.289 29.630 5.44 0.00 0.00 1.73
4252 4743 5.897377 TTGTTTGGGCTTCTAGAATAAGC 57.103 39.130 5.44 5.98 46.90 3.09
4253 4744 5.179452 TGTTTGGGCTTCTAGAATAAGCT 57.821 39.130 13.28 0.00 46.81 3.74
4254 4745 4.943705 TGTTTGGGCTTCTAGAATAAGCTG 59.056 41.667 13.28 0.00 46.81 4.24
4255 4746 3.845781 TGGGCTTCTAGAATAAGCTGG 57.154 47.619 13.28 0.00 46.81 4.85
4256 4747 2.439507 TGGGCTTCTAGAATAAGCTGGG 59.560 50.000 13.28 0.00 46.81 4.45
4257 4748 2.439880 GGGCTTCTAGAATAAGCTGGGT 59.560 50.000 13.28 0.00 46.81 4.51
4258 4749 3.646637 GGGCTTCTAGAATAAGCTGGGTA 59.353 47.826 13.28 0.00 46.81 3.69
4259 4750 4.262678 GGGCTTCTAGAATAAGCTGGGTAG 60.263 50.000 13.28 0.00 46.81 3.18
4260 4751 4.262678 GGCTTCTAGAATAAGCTGGGTAGG 60.263 50.000 13.28 0.00 46.81 3.18
4261 4752 4.262678 GCTTCTAGAATAAGCTGGGTAGGG 60.263 50.000 5.44 0.00 44.75 3.53
4262 4753 3.858135 TCTAGAATAAGCTGGGTAGGGG 58.142 50.000 0.00 0.00 0.00 4.79
4263 4754 1.821088 AGAATAAGCTGGGTAGGGGG 58.179 55.000 0.00 0.00 0.00 5.40
4264 4755 0.110678 GAATAAGCTGGGTAGGGGGC 59.889 60.000 0.00 0.00 0.00 5.80
4265 4756 0.626277 AATAAGCTGGGTAGGGGGCA 60.626 55.000 0.00 0.00 0.00 5.36
4266 4757 1.062488 ATAAGCTGGGTAGGGGGCAG 61.062 60.000 0.00 0.00 0.00 4.85
4269 4760 3.017581 CTGGGTAGGGGGCAGCTT 61.018 66.667 0.00 0.00 0.00 3.74
4270 4761 1.692749 CTGGGTAGGGGGCAGCTTA 60.693 63.158 0.00 0.00 0.00 3.09
4271 4762 1.005556 TGGGTAGGGGGCAGCTTAT 59.994 57.895 0.00 0.00 0.00 1.73
4272 4763 0.626277 TGGGTAGGGGGCAGCTTATT 60.626 55.000 0.00 0.00 0.00 1.40
4273 4764 0.110678 GGGTAGGGGGCAGCTTATTC 59.889 60.000 0.00 0.00 0.00 1.75
4274 4765 1.141185 GGTAGGGGGCAGCTTATTCT 58.859 55.000 0.00 0.00 0.00 2.40
4275 4766 1.202818 GGTAGGGGGCAGCTTATTCTG 60.203 57.143 0.00 0.00 37.15 3.02
4276 4767 1.140312 TAGGGGGCAGCTTATTCTGG 58.860 55.000 0.00 0.00 34.74 3.86
4277 4768 0.624500 AGGGGGCAGCTTATTCTGGA 60.625 55.000 0.00 0.00 34.74 3.86
4278 4769 0.258774 GGGGGCAGCTTATTCTGGAA 59.741 55.000 0.00 0.00 34.74 3.53
4279 4770 1.685148 GGGGCAGCTTATTCTGGAAG 58.315 55.000 0.00 0.00 34.74 3.46
4287 4778 4.535526 GCTTATTCTGGAAGCCCAAAAA 57.464 40.909 0.00 0.00 42.90 1.94
4306 4797 3.650070 AAAGCTAGCAAAAGAACTGGC 57.350 42.857 18.83 0.00 40.38 4.85
4307 4798 1.539157 AGCTAGCAAAAGAACTGGCC 58.461 50.000 18.83 0.00 40.92 5.36
4384 4876 6.876257 AGTTATGTTGCCTTCTTCTAGTTCTG 59.124 38.462 0.00 0.00 0.00 3.02
4385 4877 4.689612 TGTTGCCTTCTTCTAGTTCTGT 57.310 40.909 0.00 0.00 0.00 3.41
4386 4878 5.801531 TGTTGCCTTCTTCTAGTTCTGTA 57.198 39.130 0.00 0.00 0.00 2.74
4388 4880 6.223852 TGTTGCCTTCTTCTAGTTCTGTAAG 58.776 40.000 0.00 0.00 0.00 2.34
4389 4881 6.041637 TGTTGCCTTCTTCTAGTTCTGTAAGA 59.958 38.462 0.00 0.00 44.68 2.10
4404 4913 4.684242 TCTGTAAGACTGTAACACATTGCG 59.316 41.667 0.00 0.00 38.67 4.85
4436 4945 7.953710 GCTAAATGCAAGCAACTAAAATTTCAG 59.046 33.333 3.97 0.00 42.31 3.02
4464 4973 9.685828 CTATGAGTAGCTTACCTGAATTTACTC 57.314 37.037 0.00 0.00 35.47 2.59
4604 5113 1.482593 GACGGTGATGAGGATCCAAGT 59.517 52.381 15.82 0.00 0.00 3.16
4744 5253 1.005687 ACCTCCTAACCTGCGAGTACT 59.994 52.381 0.00 0.00 0.00 2.73
4809 5318 0.465460 AGTTGGCGAAAACTCCTGCA 60.465 50.000 0.00 0.00 35.44 4.41
4810 5319 0.598065 GTTGGCGAAAACTCCTGCAT 59.402 50.000 0.00 0.00 0.00 3.96
4906 5415 9.909644 GGAAGTTCTGTTAATTAGCGATAGATA 57.090 33.333 2.25 0.00 39.76 1.98
5098 9005 1.661480 TGCTTGCGCATTTGCTTCT 59.339 47.368 23.83 0.00 42.25 2.85
5131 9038 3.245622 CCCCTTTCAGTTACCTGGGATTT 60.246 47.826 0.00 0.00 39.31 2.17
5364 9276 2.571653 TCCCAGTTGGTCAATCGATTCT 59.428 45.455 7.92 0.00 34.77 2.40
5585 9501 4.472833 ACAAGGAAATATGTCAGGAGCTCT 59.527 41.667 14.64 0.00 0.00 4.09
5586 9502 4.953940 AGGAAATATGTCAGGAGCTCTC 57.046 45.455 14.64 3.76 0.00 3.20
5599 9515 4.915298 CTCTCCACTGAGCTGCTG 57.085 61.111 7.01 0.00 38.58 4.41
5611 9539 1.001860 GAGCTGCTGAGTGGAAAGTCT 59.998 52.381 7.01 0.00 0.00 3.24
5734 9671 4.276926 TGTTTTTGTTGCATAATTTGGCCC 59.723 37.500 0.00 0.00 0.00 5.80
5983 9948 6.855914 CAGCGTAAGTATTTTTCTTTTGCAGA 59.144 34.615 0.00 0.00 41.68 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.677319 AGGCCGCATAAGCTAAATAGATA 57.323 39.130 0.00 0.00 39.10 1.98
1 2 4.559862 AGGCCGCATAAGCTAAATAGAT 57.440 40.909 0.00 0.00 39.10 1.98
2 3 4.351874 AAGGCCGCATAAGCTAAATAGA 57.648 40.909 0.00 0.00 39.10 1.98
3 4 6.371548 TGATAAAGGCCGCATAAGCTAAATAG 59.628 38.462 0.00 0.00 39.10 1.73
4 5 6.234920 TGATAAAGGCCGCATAAGCTAAATA 58.765 36.000 0.00 0.00 39.10 1.40
5 6 5.070001 TGATAAAGGCCGCATAAGCTAAAT 58.930 37.500 0.00 0.00 39.10 1.40
13 14 7.498900 CCAGATAATTATGATAAAGGCCGCATA 59.501 37.037 1.78 0.00 0.00 3.14
18 19 7.406104 ACCTCCAGATAATTATGATAAAGGCC 58.594 38.462 1.78 0.00 0.00 5.19
27 28 7.437748 AGAACGAGAACCTCCAGATAATTATG 58.562 38.462 1.78 0.00 0.00 1.90
41 42 1.808411 TGGCATGAAGAACGAGAACC 58.192 50.000 0.00 0.00 0.00 3.62
43 44 2.151202 GGTTGGCATGAAGAACGAGAA 58.849 47.619 0.00 0.00 0.00 2.87
44 45 1.071542 TGGTTGGCATGAAGAACGAGA 59.928 47.619 0.00 0.00 0.00 4.04
45 46 1.522668 TGGTTGGCATGAAGAACGAG 58.477 50.000 0.00 0.00 0.00 4.18
46 47 1.974265 TTGGTTGGCATGAAGAACGA 58.026 45.000 0.00 0.00 0.00 3.85
47 48 2.034558 AGTTTGGTTGGCATGAAGAACG 59.965 45.455 0.00 0.00 0.00 3.95
48 49 3.733443 AGTTTGGTTGGCATGAAGAAC 57.267 42.857 0.00 0.00 0.00 3.01
49 50 3.181467 CCAAGTTTGGTTGGCATGAAGAA 60.181 43.478 0.00 0.00 43.43 2.52
68 69 9.778741 CTTTTATACTCTATATGTTCCAGCCAA 57.221 33.333 0.00 0.00 0.00 4.52
89 90 6.606796 TGCCCATGAATCTGCTAAATCTTTTA 59.393 34.615 0.00 0.00 0.00 1.52
90 91 5.422970 TGCCCATGAATCTGCTAAATCTTTT 59.577 36.000 0.00 0.00 0.00 2.27
91 92 4.957954 TGCCCATGAATCTGCTAAATCTTT 59.042 37.500 0.00 0.00 0.00 2.52
92 93 4.539726 TGCCCATGAATCTGCTAAATCTT 58.460 39.130 0.00 0.00 0.00 2.40
93 94 4.142790 CTGCCCATGAATCTGCTAAATCT 58.857 43.478 0.00 0.00 0.00 2.40
98 99 0.547553 TGCTGCCCATGAATCTGCTA 59.452 50.000 0.00 0.00 0.00 3.49
101 102 1.309950 CTCTGCTGCCCATGAATCTG 58.690 55.000 0.00 0.00 0.00 2.90
102 103 0.917533 ACTCTGCTGCCCATGAATCT 59.082 50.000 0.00 0.00 0.00 2.40
103 104 1.760192 AACTCTGCTGCCCATGAATC 58.240 50.000 0.00 0.00 0.00 2.52
157 165 4.748102 TCCAGTTTGACAGTTTCGTATGTC 59.252 41.667 0.00 0.00 44.88 3.06
158 166 4.699637 TCCAGTTTGACAGTTTCGTATGT 58.300 39.130 0.00 0.00 0.00 2.29
159 167 5.007234 TGTTCCAGTTTGACAGTTTCGTATG 59.993 40.000 0.00 0.00 0.00 2.39
160 168 5.120399 TGTTCCAGTTTGACAGTTTCGTAT 58.880 37.500 0.00 0.00 0.00 3.06
161 169 4.505808 TGTTCCAGTTTGACAGTTTCGTA 58.494 39.130 0.00 0.00 0.00 3.43
162 170 3.340034 TGTTCCAGTTTGACAGTTTCGT 58.660 40.909 0.00 0.00 0.00 3.85
222 231 3.604875 TGAGTCAGAATTTACCGTCCC 57.395 47.619 0.00 0.00 0.00 4.46
234 243 3.678056 ACGTAGGCATTTTGAGTCAGA 57.322 42.857 0.00 0.00 0.00 3.27
256 265 4.633175 TCACAATTAGTCCGTTGTAAGCA 58.367 39.130 0.00 0.00 36.48 3.91
260 269 7.383687 AGAAAGATCACAATTAGTCCGTTGTA 58.616 34.615 0.00 0.00 36.48 2.41
273 282 7.201644 GCTCCGAATTTATGAGAAAGATCACAA 60.202 37.037 0.00 0.00 29.78 3.33
275 284 6.258727 TGCTCCGAATTTATGAGAAAGATCAC 59.741 38.462 0.00 0.00 30.46 3.06
276 285 6.348498 TGCTCCGAATTTATGAGAAAGATCA 58.652 36.000 0.00 0.00 0.00 2.92
277 286 6.851222 TGCTCCGAATTTATGAGAAAGATC 57.149 37.500 4.55 0.00 0.00 2.75
278 287 7.630242 TTTGCTCCGAATTTATGAGAAAGAT 57.370 32.000 4.55 0.00 0.00 2.40
279 288 7.447374 TTTTGCTCCGAATTTATGAGAAAGA 57.553 32.000 4.55 0.00 0.00 2.52
281 290 7.090173 CCTTTTTGCTCCGAATTTATGAGAAA 58.910 34.615 4.55 0.00 0.00 2.52
284 293 5.343249 CCCTTTTTGCTCCGAATTTATGAG 58.657 41.667 0.00 0.00 0.00 2.90
285 294 4.381505 GCCCTTTTTGCTCCGAATTTATGA 60.382 41.667 0.00 0.00 0.00 2.15
286 295 3.865164 GCCCTTTTTGCTCCGAATTTATG 59.135 43.478 0.00 0.00 0.00 1.90
291 301 3.363787 AGCCCTTTTTGCTCCGAAT 57.636 47.368 0.00 0.00 32.41 3.34
313 323 3.485463 TCGGTTGGAACAGAAGAACAT 57.515 42.857 0.00 0.00 42.39 2.71
326 336 4.142249 GGGATCTTGGTTAATTTCGGTTGG 60.142 45.833 0.00 0.00 0.00 3.77
327 337 4.461081 TGGGATCTTGGTTAATTTCGGTTG 59.539 41.667 0.00 0.00 0.00 3.77
328 338 4.668636 TGGGATCTTGGTTAATTTCGGTT 58.331 39.130 0.00 0.00 0.00 4.44
329 339 4.310022 TGGGATCTTGGTTAATTTCGGT 57.690 40.909 0.00 0.00 0.00 4.69
330 340 4.142249 GGTTGGGATCTTGGTTAATTTCGG 60.142 45.833 0.00 0.00 0.00 4.30
331 341 4.705023 AGGTTGGGATCTTGGTTAATTTCG 59.295 41.667 0.00 0.00 0.00 3.46
332 342 6.437477 AGAAGGTTGGGATCTTGGTTAATTTC 59.563 38.462 0.00 0.00 0.00 2.17
333 343 6.322931 AGAAGGTTGGGATCTTGGTTAATTT 58.677 36.000 0.00 0.00 0.00 1.82
334 344 5.903923 AGAAGGTTGGGATCTTGGTTAATT 58.096 37.500 0.00 0.00 0.00 1.40
335 345 5.254032 AGAGAAGGTTGGGATCTTGGTTAAT 59.746 40.000 0.00 0.00 0.00 1.40
336 346 4.601857 AGAGAAGGTTGGGATCTTGGTTAA 59.398 41.667 0.00 0.00 0.00 2.01
337 347 4.175962 AGAGAAGGTTGGGATCTTGGTTA 58.824 43.478 0.00 0.00 0.00 2.85
338 348 2.989571 AGAGAAGGTTGGGATCTTGGTT 59.010 45.455 0.00 0.00 0.00 3.67
339 349 2.573915 GAGAGAAGGTTGGGATCTTGGT 59.426 50.000 0.00 0.00 0.00 3.67
356 366 1.506493 GTTGGAGTGTGTGCTGAGAG 58.494 55.000 0.00 0.00 0.00 3.20
370 380 2.159014 CGATCCGAGTTATTGGGTTGGA 60.159 50.000 0.00 0.00 0.00 3.53
403 413 3.119245 TCCGTTGGTTCAGATGTACTAGC 60.119 47.826 0.00 0.00 0.00 3.42
415 426 2.487762 TGCTCATTGATTCCGTTGGTTC 59.512 45.455 0.00 0.00 0.00 3.62
473 484 5.197224 TCTTGGGAGGATGAAACATTGAT 57.803 39.130 0.00 0.00 0.00 2.57
474 485 4.656100 TCTTGGGAGGATGAAACATTGA 57.344 40.909 0.00 0.00 0.00 2.57
475 486 4.340381 GGATCTTGGGAGGATGAAACATTG 59.660 45.833 0.00 0.00 0.00 2.82
476 487 4.017222 TGGATCTTGGGAGGATGAAACATT 60.017 41.667 0.00 0.00 0.00 2.71
477 488 3.528905 TGGATCTTGGGAGGATGAAACAT 59.471 43.478 0.00 0.00 0.00 2.71
482 493 4.017222 ACAAAATGGATCTTGGGAGGATGA 60.017 41.667 0.00 0.00 0.00 2.92
514 525 1.933812 CCCACCCACCCACCCTATT 60.934 63.158 0.00 0.00 0.00 1.73
518 529 2.219449 GATTACCCACCCACCCACCC 62.219 65.000 0.00 0.00 0.00 4.61
540 551 4.329545 GCCAGCCGGTTCTCCACA 62.330 66.667 1.90 0.00 33.28 4.17
557 568 1.836802 CCTCTCCTTCCTTCCTTCCAG 59.163 57.143 0.00 0.00 0.00 3.86
558 569 1.555765 CCCTCTCCTTCCTTCCTTCCA 60.556 57.143 0.00 0.00 0.00 3.53
562 573 0.341609 CTCCCCTCTCCTTCCTTCCT 59.658 60.000 0.00 0.00 0.00 3.36
566 577 2.652113 CCCCTCCCCTCTCCTTCCT 61.652 68.421 0.00 0.00 0.00 3.36
567 578 2.040359 CCCCTCCCCTCTCCTTCC 60.040 72.222 0.00 0.00 0.00 3.46
568 579 2.770475 GCCCCTCCCCTCTCCTTC 60.770 72.222 0.00 0.00 0.00 3.46
569 580 4.806339 CGCCCCTCCCCTCTCCTT 62.806 72.222 0.00 0.00 0.00 3.36
866 878 0.614979 CACGGAAGGAGGAGGAGGAA 60.615 60.000 0.00 0.00 0.00 3.36
867 879 1.000486 CACGGAAGGAGGAGGAGGA 60.000 63.158 0.00 0.00 0.00 3.71
868 880 2.726351 GCACGGAAGGAGGAGGAGG 61.726 68.421 0.00 0.00 0.00 4.30
869 881 2.726351 GGCACGGAAGGAGGAGGAG 61.726 68.421 0.00 0.00 0.00 3.69
870 882 2.683933 GGCACGGAAGGAGGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
893 905 1.675552 CAACCCAACAACTCTCCGTT 58.324 50.000 0.00 0.00 35.88 4.44
1082 1105 3.138798 GGCGGCACTCGAGGTAGA 61.139 66.667 18.41 0.00 42.43 2.59
1438 1461 2.672996 CCAGCGAGGTTGGGGTTG 60.673 66.667 0.00 0.00 30.12 3.77
1541 1564 0.248377 GAATGAGCGAGCAATGTGGC 60.248 55.000 0.00 0.00 0.00 5.01
1587 1610 2.572290 TCTACTCTCGCGATTCATCCA 58.428 47.619 10.36 0.00 0.00 3.41
1595 1618 1.095600 AGCACATTCTACTCTCGCGA 58.904 50.000 9.26 9.26 0.00 5.87
1628 1652 1.203052 CAGCCACAACCATCAACCATC 59.797 52.381 0.00 0.00 0.00 3.51
1679 1703 2.070039 CCTCCATAACCCCTGCGGA 61.070 63.158 0.00 0.00 34.64 5.54
1681 1705 0.474184 AATCCTCCATAACCCCTGCG 59.526 55.000 0.00 0.00 0.00 5.18
1695 1719 1.931007 GCCCCAGAGCTCCAAATCCT 61.931 60.000 10.93 0.00 0.00 3.24
1728 1752 1.447489 CCTCGGCAACAGCTCTCTG 60.447 63.158 0.00 0.00 45.71 3.35
1766 1790 2.416431 GCAATGTGCACAATCTTCCCTC 60.416 50.000 25.72 2.11 44.26 4.30
1812 1836 7.229907 AGTTACAAACAACCTGATTCCGTAATT 59.770 33.333 0.00 0.00 0.00 1.40
1815 1839 5.613329 AGTTACAAACAACCTGATTCCGTA 58.387 37.500 0.00 0.00 0.00 4.02
1818 1842 7.489160 AGAAAAGTTACAAACAACCTGATTCC 58.511 34.615 0.00 0.00 0.00 3.01
1840 1864 3.196039 TGTCCGGATTAATCGTGGAAGAA 59.804 43.478 22.58 12.83 34.94 2.52
1842 1866 3.173668 TGTCCGGATTAATCGTGGAAG 57.826 47.619 22.58 6.29 34.94 3.46
1843 1867 3.830744 ATGTCCGGATTAATCGTGGAA 57.169 42.857 22.58 15.67 34.94 3.53
1850 1874 7.696992 ACAAAAAGTGTATGTCCGGATTAAT 57.303 32.000 7.81 4.86 39.29 1.40
1858 1882 9.139174 CCAATGATAAACAAAAAGTGTATGTCC 57.861 33.333 0.00 0.00 40.60 4.02
1873 1897 8.904099 AGGCAGTATAGTAACCAATGATAAAC 57.096 34.615 2.51 0.00 0.00 2.01
1876 1900 7.931407 CACAAGGCAGTATAGTAACCAATGATA 59.069 37.037 9.67 0.00 0.00 2.15
1882 1906 3.677700 CGCACAAGGCAGTATAGTAACCA 60.678 47.826 2.51 0.00 45.17 3.67
1883 1907 2.864343 CGCACAAGGCAGTATAGTAACC 59.136 50.000 0.00 0.00 45.17 2.85
1887 1911 3.118775 TCATTCGCACAAGGCAGTATAGT 60.119 43.478 0.00 0.00 45.17 2.12
1888 1912 3.457234 TCATTCGCACAAGGCAGTATAG 58.543 45.455 0.00 0.00 45.17 1.31
1889 1913 3.535280 TCATTCGCACAAGGCAGTATA 57.465 42.857 0.00 0.00 45.17 1.47
1890 1914 2.401583 TCATTCGCACAAGGCAGTAT 57.598 45.000 0.00 0.00 45.17 2.12
1891 1915 2.177394 TTCATTCGCACAAGGCAGTA 57.823 45.000 0.00 0.00 45.17 2.74
1892 1916 1.538047 ATTCATTCGCACAAGGCAGT 58.462 45.000 0.00 0.00 45.17 4.40
1904 1928 7.604164 TCTTTCACTTCCTCACACTATTCATTC 59.396 37.037 0.00 0.00 0.00 2.67
1920 1944 9.521503 AGCAAAAGTTCTAATTTCTTTCACTTC 57.478 29.630 0.00 0.00 32.09 3.01
1928 1952 7.771183 TGACAACAGCAAAAGTTCTAATTTCT 58.229 30.769 0.00 0.00 0.00 2.52
1929 1953 7.985634 TGACAACAGCAAAAGTTCTAATTTC 57.014 32.000 0.00 0.00 0.00 2.17
1930 1954 8.947055 AATGACAACAGCAAAAGTTCTAATTT 57.053 26.923 0.00 0.00 0.00 1.82
1936 1964 6.645700 TCAAAATGACAACAGCAAAAGTTC 57.354 33.333 0.00 0.00 0.00 3.01
1945 1973 9.480053 AAGGACAATATTTCAAAATGACAACAG 57.520 29.630 0.00 0.00 0.00 3.16
1947 1975 9.260002 ACAAGGACAATATTTCAAAATGACAAC 57.740 29.630 0.00 0.00 0.00 3.32
1967 1995 5.339200 GGAGGGAGTTTGATGATAACAAGGA 60.339 44.000 0.00 0.00 0.00 3.36
1974 2002 4.406972 CAGAGTGGAGGGAGTTTGATGATA 59.593 45.833 0.00 0.00 0.00 2.15
1985 2020 1.871418 CAAGGATCAGAGTGGAGGGA 58.129 55.000 0.00 0.00 0.00 4.20
1991 2026 5.124936 TCATCAAAATGCAAGGATCAGAGTG 59.875 40.000 0.00 0.00 32.58 3.51
2013 2048 6.314400 GTGTAAAGTTCACCTGTTACAAGTCA 59.686 38.462 0.00 0.00 37.98 3.41
2015 2050 6.412214 AGTGTAAAGTTCACCTGTTACAAGT 58.588 36.000 0.00 0.00 37.98 3.16
2033 2068 1.972075 TCATCACGACCCCAAGTGTAA 59.028 47.619 0.00 0.00 39.25 2.41
2186 2221 1.908340 GCTGCCCATCTGAGGTGAGT 61.908 60.000 0.00 0.00 0.00 3.41
2189 2224 0.763652 ATAGCTGCCCATCTGAGGTG 59.236 55.000 0.00 0.00 0.00 4.00
2195 2230 1.142465 CAACTCCATAGCTGCCCATCT 59.858 52.381 0.00 0.00 0.00 2.90
2292 2589 6.304624 ACCTTTTCCCTAGTTTTGTAGAAGG 58.695 40.000 0.00 0.00 36.78 3.46
2383 2681 7.295201 TCACATTAGCAAGAACGTTGTAAATC 58.705 34.615 5.00 0.00 0.00 2.17
2392 2690 5.914635 ACAACATTTCACATTAGCAAGAACG 59.085 36.000 0.00 0.00 0.00 3.95
2398 2696 3.320256 TGCCACAACATTTCACATTAGCA 59.680 39.130 0.00 0.00 0.00 3.49
2471 2769 0.108041 ACCCACGTAACTTATGCCCG 60.108 55.000 0.00 0.00 0.00 6.13
2485 2783 9.516314 GCATTTTAGAAAACTATCATAACCCAC 57.484 33.333 0.00 0.00 0.00 4.61
2694 3074 9.944663 GCATTGGAAAGTTGAACGATATAATAA 57.055 29.630 0.00 0.00 0.00 1.40
2726 3106 4.010349 ACTCAGTAAAGCCATAAGTTGCC 58.990 43.478 0.00 0.00 0.00 4.52
2732 3112 9.032624 AGTAGTAGAAACTCAGTAAAGCCATAA 57.967 33.333 0.00 0.00 37.15 1.90
2755 3135 7.615403 AGTTTGCTGAAGATCATAGACAAGTA 58.385 34.615 0.00 0.00 0.00 2.24
3059 3441 7.067494 GGTGAGACAAAGGCAAATGTATATTCT 59.933 37.037 0.00 0.00 0.00 2.40
3106 3488 6.457355 TCATTATTGCAGTCAAAACAAGCAT 58.543 32.000 0.00 0.00 38.13 3.79
3198 3580 8.928448 ACATCTCTATGAATACAGTGGTGTTAT 58.072 33.333 0.00 0.00 35.98 1.89
3658 4049 0.601057 GTGGTGGTGCATGTTTACCC 59.399 55.000 11.65 0.98 36.10 3.69
3672 4063 1.150308 TCATGTGGTGGTGGTGGTG 59.850 57.895 0.00 0.00 0.00 4.17
3673 4064 1.150536 GTCATGTGGTGGTGGTGGT 59.849 57.895 0.00 0.00 0.00 4.16
3674 4065 0.251297 ATGTCATGTGGTGGTGGTGG 60.251 55.000 0.00 0.00 0.00 4.61
3675 4066 1.270274 CAATGTCATGTGGTGGTGGTG 59.730 52.381 0.00 0.00 0.00 4.17
3676 4067 1.144708 TCAATGTCATGTGGTGGTGGT 59.855 47.619 0.00 0.00 0.00 4.16
3677 4068 1.814394 CTCAATGTCATGTGGTGGTGG 59.186 52.381 0.00 0.00 0.00 4.61
3710 4101 5.668558 ATGGTTTTCAACGTAGACAGTTC 57.331 39.130 0.00 0.00 0.00 3.01
3763 4155 3.010250 AGTCCCCAGTATTTTCTTGGACC 59.990 47.826 0.00 0.00 37.43 4.46
3828 4314 5.499004 TCTGCCTGACTGGTTAACTTTAT 57.501 39.130 5.42 0.00 38.35 1.40
4084 4575 3.076032 ACCAAAAGAACTGGCCCTAAGAT 59.924 43.478 0.00 0.00 37.48 2.40
4086 4577 2.558359 CACCAAAAGAACTGGCCCTAAG 59.442 50.000 0.00 0.00 37.48 2.18
4087 4578 2.593026 CACCAAAAGAACTGGCCCTAA 58.407 47.619 0.00 0.00 37.48 2.69
4088 4579 1.203001 CCACCAAAAGAACTGGCCCTA 60.203 52.381 0.00 0.00 37.48 3.53
4089 4580 0.469892 CCACCAAAAGAACTGGCCCT 60.470 55.000 0.00 0.00 37.48 5.19
4090 4581 2.049435 CCACCAAAAGAACTGGCCC 58.951 57.895 0.00 0.00 37.48 5.80
4091 4582 1.367471 GCCACCAAAAGAACTGGCC 59.633 57.895 0.00 0.00 43.01 5.36
4093 4584 3.541996 AAAAGCCACCAAAAGAACTGG 57.458 42.857 0.00 0.00 40.05 4.00
4094 4585 5.514274 TCTAAAAGCCACCAAAAGAACTG 57.486 39.130 0.00 0.00 0.00 3.16
4095 4586 6.731292 ATTCTAAAAGCCACCAAAAGAACT 57.269 33.333 0.00 0.00 0.00 3.01
4096 4587 7.116376 GCTTATTCTAAAAGCCACCAAAAGAAC 59.884 37.037 0.00 0.00 42.85 3.01
4097 4588 7.151976 GCTTATTCTAAAAGCCACCAAAAGAA 58.848 34.615 0.00 0.00 42.85 2.52
4098 4589 6.687604 GCTTATTCTAAAAGCCACCAAAAGA 58.312 36.000 0.00 0.00 42.85 2.52
4099 4590 6.951256 GCTTATTCTAAAAGCCACCAAAAG 57.049 37.500 0.00 0.00 42.85 2.27
4122 4613 0.183492 TAGGGGGCAGCTTATTGCAG 59.817 55.000 0.00 0.00 45.86 4.41
4123 4614 0.106719 GTAGGGGGCAGCTTATTGCA 60.107 55.000 0.00 0.00 45.86 4.08
4124 4615 0.823769 GGTAGGGGGCAGCTTATTGC 60.824 60.000 0.00 0.00 43.34 3.56
4125 4616 0.846693 AGGTAGGGGGCAGCTTATTG 59.153 55.000 0.00 0.00 0.00 1.90
4126 4617 2.339769 CTAGGTAGGGGGCAGCTTATT 58.660 52.381 0.00 0.00 0.00 1.40
4127 4618 2.031495 CTAGGTAGGGGGCAGCTTAT 57.969 55.000 0.00 0.00 0.00 1.73
4128 4619 0.763223 GCTAGGTAGGGGGCAGCTTA 60.763 60.000 0.00 0.00 0.00 3.09
4129 4620 2.073101 GCTAGGTAGGGGGCAGCTT 61.073 63.158 0.00 0.00 0.00 3.74
4130 4621 2.446802 GCTAGGTAGGGGGCAGCT 60.447 66.667 0.00 0.00 0.00 4.24
4131 4622 0.763223 TAAGCTAGGTAGGGGGCAGC 60.763 60.000 0.00 0.00 0.00 5.25
4132 4623 2.031495 ATAAGCTAGGTAGGGGGCAG 57.969 55.000 0.00 0.00 0.00 4.85
4133 4624 2.090153 AGAATAAGCTAGGTAGGGGGCA 60.090 50.000 0.00 0.00 0.00 5.36
4134 4625 2.622210 AGAATAAGCTAGGTAGGGGGC 58.378 52.381 0.00 0.00 0.00 5.80
4135 4626 5.272405 TCTAGAATAAGCTAGGTAGGGGG 57.728 47.826 0.00 0.00 38.68 5.40
4136 4627 5.186215 GCTTCTAGAATAAGCTAGGTAGGGG 59.814 48.000 5.44 0.00 44.75 4.79
4137 4628 5.186215 GGCTTCTAGAATAAGCTAGGTAGGG 59.814 48.000 13.28 0.00 46.81 3.53
4138 4629 5.186215 GGGCTTCTAGAATAAGCTAGGTAGG 59.814 48.000 13.28 0.00 46.81 3.18
4139 4630 5.775701 TGGGCTTCTAGAATAAGCTAGGTAG 59.224 44.000 13.28 0.00 46.81 3.18
4140 4631 5.712752 TGGGCTTCTAGAATAAGCTAGGTA 58.287 41.667 13.28 0.00 46.81 3.08
4141 4632 4.557705 TGGGCTTCTAGAATAAGCTAGGT 58.442 43.478 13.28 0.00 46.81 3.08
4142 4633 5.301555 GTTGGGCTTCTAGAATAAGCTAGG 58.698 45.833 13.28 0.00 46.81 3.02
4143 4634 5.163301 TGGTTGGGCTTCTAGAATAAGCTAG 60.163 44.000 13.28 0.00 46.81 3.42
4144 4635 4.719773 TGGTTGGGCTTCTAGAATAAGCTA 59.280 41.667 13.28 2.66 46.81 3.32
4145 4636 3.523564 TGGTTGGGCTTCTAGAATAAGCT 59.476 43.478 13.28 0.00 46.81 3.74
4146 4637 3.886123 TGGTTGGGCTTCTAGAATAAGC 58.114 45.455 5.44 5.98 46.90 3.09
4147 4638 7.410120 AATTTGGTTGGGCTTCTAGAATAAG 57.590 36.000 5.44 0.00 0.00 1.73
4148 4639 7.790782 AAATTTGGTTGGGCTTCTAGAATAA 57.209 32.000 5.44 0.00 0.00 1.40
4149 4640 8.912988 CATAAATTTGGTTGGGCTTCTAGAATA 58.087 33.333 5.44 0.00 0.00 1.75
4150 4641 7.400052 ACATAAATTTGGTTGGGCTTCTAGAAT 59.600 33.333 5.44 0.00 0.00 2.40
4151 4642 6.723977 ACATAAATTTGGTTGGGCTTCTAGAA 59.276 34.615 4.81 4.81 0.00 2.10
4152 4643 6.252995 ACATAAATTTGGTTGGGCTTCTAGA 58.747 36.000 0.00 0.00 0.00 2.43
4153 4644 6.530019 ACATAAATTTGGTTGGGCTTCTAG 57.470 37.500 0.00 0.00 0.00 2.43
4154 4645 6.926630 AACATAAATTTGGTTGGGCTTCTA 57.073 33.333 0.00 0.00 0.00 2.10
4155 4646 5.823861 AACATAAATTTGGTTGGGCTTCT 57.176 34.783 0.00 0.00 0.00 2.85
4156 4647 6.875948 AAAACATAAATTTGGTTGGGCTTC 57.124 33.333 0.00 0.00 0.00 3.86
4157 4648 8.214364 TCTAAAAACATAAATTTGGTTGGGCTT 58.786 29.630 0.00 1.84 0.00 4.35
4158 4649 7.740805 TCTAAAAACATAAATTTGGTTGGGCT 58.259 30.769 0.00 0.00 0.00 5.19
4159 4650 7.971183 TCTAAAAACATAAATTTGGTTGGGC 57.029 32.000 0.00 0.00 0.00 5.36
4160 4651 8.503196 GCTTCTAAAAACATAAATTTGGTTGGG 58.497 33.333 0.00 0.00 0.00 4.12
4161 4652 8.503196 GGCTTCTAAAAACATAAATTTGGTTGG 58.497 33.333 0.00 0.00 0.00 3.77
4162 4653 9.271828 AGGCTTCTAAAAACATAAATTTGGTTG 57.728 29.630 0.00 0.00 0.00 3.77
4174 4665 9.702494 GTCTTAACTACTAGGCTTCTAAAAACA 57.298 33.333 0.00 0.00 0.00 2.83
4175 4666 9.926158 AGTCTTAACTACTAGGCTTCTAAAAAC 57.074 33.333 0.00 0.00 32.59 2.43
4177 4668 9.924650 CAAGTCTTAACTACTAGGCTTCTAAAA 57.075 33.333 0.00 0.00 34.27 1.52
4178 4669 9.305555 TCAAGTCTTAACTACTAGGCTTCTAAA 57.694 33.333 0.00 0.00 34.27 1.85
4179 4670 8.738106 GTCAAGTCTTAACTACTAGGCTTCTAA 58.262 37.037 0.00 0.00 34.27 2.10
4180 4671 8.108364 AGTCAAGTCTTAACTACTAGGCTTCTA 58.892 37.037 0.00 0.00 34.27 2.10
4181 4672 6.949463 AGTCAAGTCTTAACTACTAGGCTTCT 59.051 38.462 0.00 0.00 34.27 2.85
4182 4673 7.160547 AGTCAAGTCTTAACTACTAGGCTTC 57.839 40.000 0.00 0.00 34.27 3.86
4183 4674 8.647256 TTAGTCAAGTCTTAACTACTAGGCTT 57.353 34.615 0.00 0.00 36.80 4.35
4184 4675 8.826293 ATTAGTCAAGTCTTAACTACTAGGCT 57.174 34.615 0.00 0.00 33.48 4.58
4188 4679 9.917887 AGCCTATTAGTCAAGTCTTAACTACTA 57.082 33.333 0.00 0.00 33.48 1.82
4189 4680 8.826293 AGCCTATTAGTCAAGTCTTAACTACT 57.174 34.615 0.00 0.00 33.48 2.57
4217 4708 9.237187 AGAAGCCCAAACAAAATTTTCTTTTTA 57.763 25.926 0.00 0.00 0.00 1.52
4218 4709 8.121305 AGAAGCCCAAACAAAATTTTCTTTTT 57.879 26.923 0.00 0.00 0.00 1.94
4219 4710 7.701539 AGAAGCCCAAACAAAATTTTCTTTT 57.298 28.000 0.00 1.12 0.00 2.27
4220 4711 8.264347 TCTAGAAGCCCAAACAAAATTTTCTTT 58.736 29.630 0.00 0.00 0.00 2.52
4221 4712 7.791029 TCTAGAAGCCCAAACAAAATTTTCTT 58.209 30.769 0.00 0.00 0.00 2.52
4222 4713 7.360113 TCTAGAAGCCCAAACAAAATTTTCT 57.640 32.000 0.00 0.00 0.00 2.52
4223 4714 8.607441 ATTCTAGAAGCCCAAACAAAATTTTC 57.393 30.769 11.53 0.00 0.00 2.29
4225 4716 9.710900 CTTATTCTAGAAGCCCAAACAAAATTT 57.289 29.630 11.53 0.00 0.00 1.82
4226 4717 7.819415 GCTTATTCTAGAAGCCCAAACAAAATT 59.181 33.333 11.53 0.00 42.90 1.82
4227 4718 7.323420 GCTTATTCTAGAAGCCCAAACAAAAT 58.677 34.615 11.53 0.00 42.90 1.82
4228 4719 6.687604 GCTTATTCTAGAAGCCCAAACAAAA 58.312 36.000 11.53 0.00 42.90 2.44
4229 4720 6.267496 GCTTATTCTAGAAGCCCAAACAAA 57.733 37.500 11.53 0.00 42.90 2.83
4230 4721 5.897377 GCTTATTCTAGAAGCCCAAACAA 57.103 39.130 11.53 0.00 42.90 2.83
4239 4730 4.284746 CCCCTACCCAGCTTATTCTAGAAG 59.715 50.000 11.53 0.00 0.00 2.85
4240 4731 4.232091 CCCCTACCCAGCTTATTCTAGAA 58.768 47.826 7.82 7.82 0.00 2.10
4241 4732 3.439558 CCCCCTACCCAGCTTATTCTAGA 60.440 52.174 0.00 0.00 0.00 2.43
4242 4733 2.907042 CCCCCTACCCAGCTTATTCTAG 59.093 54.545 0.00 0.00 0.00 2.43
4243 4734 2.986050 CCCCCTACCCAGCTTATTCTA 58.014 52.381 0.00 0.00 0.00 2.10
4244 4735 1.821088 CCCCCTACCCAGCTTATTCT 58.179 55.000 0.00 0.00 0.00 2.40
4245 4736 0.110678 GCCCCCTACCCAGCTTATTC 59.889 60.000 0.00 0.00 0.00 1.75
4246 4737 0.626277 TGCCCCCTACCCAGCTTATT 60.626 55.000 0.00 0.00 0.00 1.40
4247 4738 1.005556 TGCCCCCTACCCAGCTTAT 59.994 57.895 0.00 0.00 0.00 1.73
4248 4739 1.692749 CTGCCCCCTACCCAGCTTA 60.693 63.158 0.00 0.00 0.00 3.09
4249 4740 3.017581 CTGCCCCCTACCCAGCTT 61.018 66.667 0.00 0.00 0.00 3.74
4252 4743 1.062488 ATAAGCTGCCCCCTACCCAG 61.062 60.000 0.00 0.00 0.00 4.45
4253 4744 0.626277 AATAAGCTGCCCCCTACCCA 60.626 55.000 0.00 0.00 0.00 4.51
4254 4745 0.110678 GAATAAGCTGCCCCCTACCC 59.889 60.000 0.00 0.00 0.00 3.69
4255 4746 1.141185 AGAATAAGCTGCCCCCTACC 58.859 55.000 0.00 0.00 0.00 3.18
4256 4747 1.202818 CCAGAATAAGCTGCCCCCTAC 60.203 57.143 0.00 0.00 34.56 3.18
4257 4748 1.140312 CCAGAATAAGCTGCCCCCTA 58.860 55.000 0.00 0.00 34.56 3.53
4258 4749 0.624500 TCCAGAATAAGCTGCCCCCT 60.625 55.000 0.00 0.00 34.56 4.79
4259 4750 0.258774 TTCCAGAATAAGCTGCCCCC 59.741 55.000 0.00 0.00 34.56 5.40
4260 4751 1.685148 CTTCCAGAATAAGCTGCCCC 58.315 55.000 0.00 0.00 34.56 5.80
4261 4752 1.028130 GCTTCCAGAATAAGCTGCCC 58.972 55.000 0.00 0.00 44.75 5.36
4262 4753 1.028130 GGCTTCCAGAATAAGCTGCC 58.972 55.000 7.65 0.00 46.81 4.85
4263 4754 1.028130 GGGCTTCCAGAATAAGCTGC 58.972 55.000 7.65 0.00 46.81 5.25
4264 4755 2.425143 TGGGCTTCCAGAATAAGCTG 57.575 50.000 7.65 0.00 46.81 4.24
4265 4756 3.456380 TTTGGGCTTCCAGAATAAGCT 57.544 42.857 7.65 0.00 46.81 3.74
4266 4757 4.535526 TTTTTGGGCTTCCAGAATAAGC 57.464 40.909 0.00 0.00 46.90 3.09
4284 4775 4.371786 GCCAGTTCTTTTGCTAGCTTTTT 58.628 39.130 17.23 0.00 0.00 1.94
4285 4776 3.243873 GGCCAGTTCTTTTGCTAGCTTTT 60.244 43.478 17.23 0.00 0.00 2.27
4286 4777 2.297315 GGCCAGTTCTTTTGCTAGCTTT 59.703 45.455 17.23 0.00 0.00 3.51
4287 4778 1.889170 GGCCAGTTCTTTTGCTAGCTT 59.111 47.619 17.23 0.00 0.00 3.74
4288 4779 1.539157 GGCCAGTTCTTTTGCTAGCT 58.461 50.000 17.23 0.00 0.00 3.32
4289 4780 0.528017 GGGCCAGTTCTTTTGCTAGC 59.472 55.000 8.10 8.10 0.00 3.42
4290 4781 2.206576 AGGGCCAGTTCTTTTGCTAG 57.793 50.000 6.18 0.00 0.00 3.42
4291 4782 2.675658 AAGGGCCAGTTCTTTTGCTA 57.324 45.000 6.18 0.00 0.00 3.49
4292 4783 2.675658 TAAGGGCCAGTTCTTTTGCT 57.324 45.000 6.18 0.00 0.00 3.91
4293 4784 3.673323 CGAATAAGGGCCAGTTCTTTTGC 60.673 47.826 6.18 0.00 0.00 3.68
4294 4785 3.506067 ACGAATAAGGGCCAGTTCTTTTG 59.494 43.478 6.18 2.25 0.00 2.44
4295 4786 3.763057 ACGAATAAGGGCCAGTTCTTTT 58.237 40.909 6.18 0.00 0.00 2.27
4296 4787 3.434940 ACGAATAAGGGCCAGTTCTTT 57.565 42.857 6.18 0.00 0.00 2.52
4297 4788 3.434940 AACGAATAAGGGCCAGTTCTT 57.565 42.857 6.18 0.29 0.00 2.52
4298 4789 3.244770 TGAAACGAATAAGGGCCAGTTCT 60.245 43.478 6.18 0.00 0.00 3.01
4299 4790 3.078837 TGAAACGAATAAGGGCCAGTTC 58.921 45.455 6.18 5.89 0.00 3.01
4300 4791 3.149005 TGAAACGAATAAGGGCCAGTT 57.851 42.857 6.18 0.00 0.00 3.16
4301 4792 2.871096 TGAAACGAATAAGGGCCAGT 57.129 45.000 6.18 0.00 0.00 4.00
4302 4793 5.123227 TCTTATGAAACGAATAAGGGCCAG 58.877 41.667 6.18 0.00 37.92 4.85
4303 4794 5.105567 TCTTATGAAACGAATAAGGGCCA 57.894 39.130 6.18 0.00 37.92 5.36
4304 4795 5.531287 ACATCTTATGAAACGAATAAGGGCC 59.469 40.000 0.00 0.00 37.92 5.80
4305 4796 6.483640 AGACATCTTATGAAACGAATAAGGGC 59.516 38.462 0.00 0.00 37.92 5.19
4306 4797 7.928706 AGAGACATCTTATGAAACGAATAAGGG 59.071 37.037 0.00 0.00 37.92 3.95
4307 4798 8.879342 AGAGACATCTTATGAAACGAATAAGG 57.121 34.615 0.00 0.00 37.92 2.69
4384 4876 4.698276 CACGCAATGTGTTACAGTCTTAC 58.302 43.478 0.00 0.00 43.88 2.34
4385 4877 4.983215 CACGCAATGTGTTACAGTCTTA 57.017 40.909 0.00 0.00 43.88 2.10
4386 4878 3.878086 CACGCAATGTGTTACAGTCTT 57.122 42.857 0.00 0.00 43.88 3.01
4404 4913 2.982470 GTTGCTTGCATTTAGCTGACAC 59.018 45.455 10.10 0.00 45.94 3.67
4436 4945 9.465985 GTAAATTCAGGTAAGCTACTCATAGTC 57.534 37.037 0.00 0.00 0.00 2.59
4464 4973 2.260844 TTCTCTGGCCACACAAAGAG 57.739 50.000 0.00 6.16 37.99 2.85
4604 5113 0.748367 CCGAGATGACACGAGGAGGA 60.748 60.000 0.00 0.00 32.29 3.71
4744 5253 3.645212 GAGAACATGATCCTCTCCATGGA 59.355 47.826 15.27 15.27 43.16 3.41
4926 5435 9.099454 GTCGGTTTTATCTCTAATTTCACATCT 57.901 33.333 0.00 0.00 0.00 2.90
4936 5445 6.381994 AGGTACATGGTCGGTTTTATCTCTAA 59.618 38.462 0.00 0.00 0.00 2.10
4937 5446 5.895534 AGGTACATGGTCGGTTTTATCTCTA 59.104 40.000 0.00 0.00 0.00 2.43
5098 9005 0.765135 TGAAAGGGGGAGTGACCGAA 60.765 55.000 0.00 0.00 40.11 4.30
5131 9038 4.761739 CCTACCAAAGAGCAAGACATGAAA 59.238 41.667 0.00 0.00 0.00 2.69
5364 9276 5.043055 ACAGCTGGGGGATATATATCTCTCA 60.043 44.000 21.59 21.59 41.25 3.27
5585 9501 1.670015 CACTCAGCAGCTCAGTGGA 59.330 57.895 18.41 0.00 34.96 4.02
5586 9502 4.280676 CACTCAGCAGCTCAGTGG 57.719 61.111 18.41 0.14 34.96 4.00
5599 9515 4.073293 TCAACCTCAAGACTTTCCACTC 57.927 45.455 0.00 0.00 0.00 3.51
5611 9539 5.728471 TGCAAACAAATCTTTCAACCTCAA 58.272 33.333 0.00 0.00 0.00 3.02
5734 9671 4.946157 ACTGTTATCCTGGCAGAAAAGATG 59.054 41.667 17.94 3.85 34.60 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.