Multiple sequence alignment - TraesCS5D01G373000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G373000 chr5D 100.000 3959 0 0 1 3959 446517664 446521622 0.000000e+00 7312.0
1 TraesCS5D01G373000 chr5D 86.070 402 44 9 3410 3800 554516961 554517361 4.730000e-114 422.0
2 TraesCS5D01G373000 chr5D 87.879 99 9 3 2 99 469517160 469517064 3.230000e-21 113.0
3 TraesCS5D01G373000 chr5B 91.910 1817 116 17 31 1836 544607948 544609744 0.000000e+00 2512.0
4 TraesCS5D01G373000 chr5B 91.778 1350 97 7 2040 3377 544610018 544611365 0.000000e+00 1866.0
5 TraesCS5D01G373000 chr5B 93.396 212 12 2 1627 1836 663246446 663246235 2.970000e-81 313.0
6 TraesCS5D01G373000 chr5B 91.429 210 17 1 1829 2038 544609773 544609981 1.800000e-73 287.0
7 TraesCS5D01G373000 chr5A 93.266 1396 63 22 2040 3407 564496975 564498367 0.000000e+00 2028.0
8 TraesCS5D01G373000 chr5A 91.637 1124 63 20 720 1830 564495579 564496684 0.000000e+00 1526.0
9 TraesCS5D01G373000 chr5A 93.213 221 13 2 1618 1836 149694669 149694449 1.370000e-84 324.0
10 TraesCS5D01G373000 chr5A 92.377 223 15 2 1616 1836 522676122 522675900 2.300000e-82 316.0
11 TraesCS5D01G373000 chr5A 87.143 210 18 4 1837 2038 564496727 564496935 3.080000e-56 230.0
12 TraesCS5D01G373000 chr2B 87.775 409 37 7 3410 3809 137261121 137261525 2.150000e-127 466.0
13 TraesCS5D01G373000 chr2D 85.227 440 52 9 3371 3800 344347804 344348240 1.310000e-119 440.0
14 TraesCS5D01G373000 chr1B 86.902 397 42 6 3411 3800 596945189 596944796 1.690000e-118 436.0
15 TraesCS5D01G373000 chr1B 92.925 212 13 2 1627 1836 37921144 37920933 1.380000e-79 307.0
16 TraesCS5D01G373000 chr1B 89.362 94 9 1 2496 2588 664057714 664057807 2.500000e-22 117.0
17 TraesCS5D01G373000 chr1D 87.402 381 43 4 3412 3789 10046789 10047167 2.190000e-117 433.0
18 TraesCS5D01G373000 chr1D 87.139 381 43 5 3412 3789 9914202 9913825 1.020000e-115 427.0
19 TraesCS5D01G373000 chr1D 85.437 412 48 7 3409 3809 315642570 315642160 6.120000e-113 418.0
20 TraesCS5D01G373000 chr7A 87.240 384 41 7 3412 3790 715126477 715126097 7.860000e-117 431.0
21 TraesCS5D01G373000 chr7A 90.667 75 5 2 23 96 725736777 725736704 9.050000e-17 99.0
22 TraesCS5D01G373000 chr7A 87.500 64 8 0 2529 2592 615344613 615344676 1.530000e-09 75.0
23 TraesCS5D01G373000 chr3D 85.542 415 45 11 3410 3809 25967601 25967187 1.700000e-113 420.0
24 TraesCS5D01G373000 chr6B 93.396 212 12 2 1627 1836 49680604 49680393 2.970000e-81 313.0
25 TraesCS5D01G373000 chr6B 92.453 212 14 2 1627 1836 522435340 522435129 6.430000e-78 302.0
26 TraesCS5D01G373000 chr1A 91.928 223 16 2 1616 1836 565925398 565925620 1.070000e-80 311.0
27 TraesCS5D01G373000 chr6D 90.123 81 7 1 2492 2572 449267993 449268072 1.950000e-18 104.0
28 TraesCS5D01G373000 chr4A 85.149 101 10 5 3 100 695108444 695108542 9.050000e-17 99.0
29 TraesCS5D01G373000 chr2A 88.462 78 4 2 2495 2572 537461492 537461420 5.450000e-14 89.8
30 TraesCS5D01G373000 chr7D 91.935 62 5 0 2495 2556 594074079 594074140 1.960000e-13 87.9
31 TraesCS5D01G373000 chr7D 83.607 61 10 0 2495 2555 156863094 156863034 1.540000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G373000 chr5D 446517664 446521622 3958 False 7312.000000 7312 100.000000 1 3959 1 chr5D.!!$F1 3958
1 TraesCS5D01G373000 chr5B 544607948 544611365 3417 False 1555.000000 2512 91.705667 31 3377 3 chr5B.!!$F1 3346
2 TraesCS5D01G373000 chr5A 564495579 564498367 2788 False 1261.333333 2028 90.682000 720 3407 3 chr5A.!!$F1 2687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 602 0.179001 GGTTACGGGAATGGGGATGG 60.179 60.0 0.0 0.0 0.0 3.51 F
1109 1126 0.036952 AGAAGGTGTGGAGCATGACG 60.037 55.0 0.0 0.0 0.0 4.35 F
1514 1534 0.683973 ATCGATGATCTCAGTGGGCC 59.316 55.0 0.0 0.0 0.0 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 2060 0.033781 GCAAAAAGCAGATGCCCACA 59.966 50.0 0.14 0.00 44.79 4.17 R
2343 2447 1.246056 GCATTCAGCTGGCCAGAACA 61.246 55.0 37.21 16.48 41.15 3.18 R
3307 3445 0.034616 AGTCCTGCAGCTCACAAGTC 59.965 55.0 8.66 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.537049 TGGTTTCAATATTCATTTCTGCTTTG 57.463 30.769 0.00 0.00 0.00 2.77
26 27 7.118101 TGGTTTCAATATTCATTTCTGCTTTGC 59.882 33.333 0.00 0.00 0.00 3.68
27 28 7.118101 GGTTTCAATATTCATTTCTGCTTTGCA 59.882 33.333 0.00 0.00 36.92 4.08
28 29 8.497554 GTTTCAATATTCATTTCTGCTTTGCAA 58.502 29.630 0.00 0.00 38.41 4.08
29 30 8.604640 TTCAATATTCATTTCTGCTTTGCAAA 57.395 26.923 12.14 12.14 38.41 3.68
59 60 6.559810 TGAAAACAAAATATGATAGCACCCG 58.440 36.000 0.00 0.00 0.00 5.28
60 61 6.375736 TGAAAACAAAATATGATAGCACCCGA 59.624 34.615 0.00 0.00 0.00 5.14
97 98 3.873910 CTCCGTTTTCATCCCTACATGT 58.126 45.455 2.69 2.69 0.00 3.21
101 102 4.033587 CCGTTTTCATCCCTACATGTAACG 59.966 45.833 14.62 14.62 39.63 3.18
129 130 9.853177 AGGTTTCTATCTAACATCCCAAAATAG 57.147 33.333 0.00 0.00 0.00 1.73
150 151 4.220724 AGGATGATGTTGCAAATGCCTAT 58.779 39.130 0.00 0.00 41.18 2.57
193 194 5.794687 TTGCTTTGACAATATGTAGACGG 57.205 39.130 0.00 0.00 0.00 4.79
329 330 9.474920 TTTTGTGTCATGTTTATCTGATTTTCC 57.525 29.630 0.00 0.00 0.00 3.13
341 342 5.432885 TCTGATTTTCCGACTTTTGGTTC 57.567 39.130 0.00 0.00 0.00 3.62
358 359 2.327568 GTTCGACATGTGCATTTTGGG 58.672 47.619 1.15 0.00 0.00 4.12
364 365 2.433604 ACATGTGCATTTTGGGTGTTGA 59.566 40.909 0.00 0.00 0.00 3.18
418 419 2.352651 CTGCTTGGGACATATTGTGACG 59.647 50.000 0.00 0.00 39.30 4.35
422 423 3.686916 TGGGACATATTGTGACGTTCA 57.313 42.857 0.00 0.00 0.00 3.18
438 439 5.522460 TGACGTTCACTTCTTTCTCGATTTT 59.478 36.000 0.00 0.00 0.00 1.82
503 504 1.146544 ATAGTTTGGTGGGGCCTGGT 61.147 55.000 0.84 0.00 38.35 4.00
514 515 2.856231 TGGGGCCTGGTTAATTATCTGT 59.144 45.455 0.84 0.00 0.00 3.41
516 517 3.889538 GGGGCCTGGTTAATTATCTGTTC 59.110 47.826 0.84 0.00 0.00 3.18
517 518 4.532834 GGGCCTGGTTAATTATCTGTTCA 58.467 43.478 0.84 0.00 0.00 3.18
541 542 7.277760 TCAACTTCCGATACATGTTAGATGTTG 59.722 37.037 22.80 22.80 39.14 3.33
592 593 1.065998 CCAAGAATCGGGTTACGGGAA 60.066 52.381 0.00 0.00 44.45 3.97
594 595 2.612212 CAAGAATCGGGTTACGGGAATG 59.388 50.000 0.00 0.00 44.45 2.67
598 599 2.368821 CGGGTTACGGGAATGGGGA 61.369 63.158 0.00 0.00 39.42 4.81
601 602 0.179001 GGTTACGGGAATGGGGATGG 60.179 60.000 0.00 0.00 0.00 3.51
644 645 1.467920 GGCCTCATGGAGAAACAAGG 58.532 55.000 0.00 0.00 34.57 3.61
661 668 1.417288 AGGAGACCATGCATCGATCA 58.583 50.000 0.00 0.00 0.00 2.92
665 672 3.243873 GGAGACCATGCATCGATCACTTA 60.244 47.826 0.00 0.00 0.00 2.24
696 703 5.239525 GGCCTCGTCATAGAGCATAAAAATT 59.760 40.000 0.00 0.00 36.95 1.82
697 704 6.366630 GCCTCGTCATAGAGCATAAAAATTC 58.633 40.000 0.00 0.00 36.95 2.17
703 710 7.466455 CGTCATAGAGCATAAAAATTCAGCAGT 60.466 37.037 0.00 0.00 0.00 4.40
714 721 5.429957 AAATTCAGCAGTGAGAGTTGAAC 57.570 39.130 0.00 0.00 38.67 3.18
795 803 8.677148 ACAGTCTTAATTCTCTTTTGCAACTA 57.323 30.769 0.00 0.00 0.00 2.24
809 817 3.779759 TGCAACTACAAAAGCCAAAGTG 58.220 40.909 0.00 0.00 0.00 3.16
815 823 5.137551 ACTACAAAAGCCAAAGTGTACCAT 58.862 37.500 0.00 0.00 0.00 3.55
836 844 5.536161 CCATGGAGGTTAAATTGGAGTATGG 59.464 44.000 5.56 0.00 0.00 2.74
894 909 1.895020 TTAGCACGGGTAGCAGGGTG 61.895 60.000 0.00 1.28 0.00 4.61
920 936 2.840572 AAAACCGCCAACCCCACC 60.841 61.111 0.00 0.00 0.00 4.61
921 937 4.926162 AAACCGCCAACCCCACCC 62.926 66.667 0.00 0.00 0.00 4.61
941 958 2.242926 CCCACACTCTCTTCTCACAGA 58.757 52.381 0.00 0.00 0.00 3.41
1109 1126 0.036952 AGAAGGTGTGGAGCATGACG 60.037 55.000 0.00 0.00 0.00 4.35
1220 1237 3.769369 ATCCGCCGAGCTCGAGGTA 62.769 63.158 36.59 24.57 43.02 3.08
1224 1241 1.504647 CGCCGAGCTCGAGGTATGTA 61.505 60.000 36.59 0.00 43.02 2.29
1233 1250 1.784593 TCGAGGTATGTATCCCCCTGA 59.215 52.381 0.00 0.00 0.00 3.86
1241 1258 3.731886 TATCCCCCTGACCTGCCCC 62.732 68.421 0.00 0.00 0.00 5.80
1281 1299 3.332385 GCCCGAACCAACCCCCTA 61.332 66.667 0.00 0.00 0.00 3.53
1282 1300 2.995547 CCCGAACCAACCCCCTAG 59.004 66.667 0.00 0.00 0.00 3.02
1286 1304 2.944954 AACCAACCCCCTAGCCCC 60.945 66.667 0.00 0.00 0.00 5.80
1306 1324 2.279918 CCGTCGCCCCTTAATCCG 60.280 66.667 0.00 0.00 0.00 4.18
1316 1334 1.093496 CCTTAATCCGGCGTTGACCC 61.093 60.000 6.01 0.00 0.00 4.46
1317 1335 1.426041 CTTAATCCGGCGTTGACCCG 61.426 60.000 6.01 0.00 45.17 5.28
1331 1349 3.450115 CCCGACGACCTCTGACCC 61.450 72.222 0.00 0.00 0.00 4.46
1375 1394 2.224185 GGGAATTTTTGGCGGAAGTGTT 60.224 45.455 0.00 0.00 0.00 3.32
1378 1397 3.934457 ATTTTTGGCGGAAGTGTTAGG 57.066 42.857 0.00 0.00 0.00 2.69
1394 1413 3.245443 TGTTAGGCATGGTTGGTTGGTAT 60.245 43.478 0.00 0.00 0.00 2.73
1402 1421 6.351796 GGCATGGTTGGTTGGTATAGATTTTT 60.352 38.462 0.00 0.00 0.00 1.94
1441 1460 1.648467 GCAGGGACAGGTCGAAATGC 61.648 60.000 0.00 0.00 0.00 3.56
1452 1471 1.154225 CGAAATGCGGAAGTGGTGC 60.154 57.895 0.00 0.00 36.03 5.01
1472 1492 2.919228 CCCAATACTAGGTGGTTCTGC 58.081 52.381 8.16 0.00 32.60 4.26
1502 1522 4.260907 GCATTTAGCTGCAGAAATCGATGA 60.261 41.667 20.43 0.00 41.87 2.92
1506 1526 3.391965 AGCTGCAGAAATCGATGATCTC 58.608 45.455 20.43 7.22 0.00 2.75
1511 1531 3.493877 GCAGAAATCGATGATCTCAGTGG 59.506 47.826 10.23 2.49 0.00 4.00
1514 1534 0.683973 ATCGATGATCTCAGTGGGCC 59.316 55.000 0.00 0.00 0.00 5.80
1555 1576 2.614481 GGATTCAGTGTGGGCTACGAAA 60.614 50.000 0.00 0.00 0.00 3.46
1652 1673 8.988934 GTTGTATTGTGTTGAACTCTAGAATGA 58.011 33.333 0.00 0.00 0.00 2.57
1832 1853 7.597386 AGAACAGAGCAATGTTTCCTTTATTC 58.403 34.615 7.84 0.00 43.32 1.75
1836 1857 6.092670 CAGAGCAATGTTTCCTTTATTCGAGA 59.907 38.462 0.00 0.00 0.00 4.04
1837 1858 6.655003 AGAGCAATGTTTCCTTTATTCGAGAA 59.345 34.615 0.00 0.00 0.00 2.87
1839 1860 7.253422 AGCAATGTTTCCTTTATTCGAGAATG 58.747 34.615 8.46 0.00 32.50 2.67
1888 1945 9.575868 TTGACTGTTTATTGTATACTTTTGGGA 57.424 29.630 4.17 0.00 0.00 4.37
1910 1967 3.883830 TTCACCACACAGCATTTTGTT 57.116 38.095 0.00 0.00 0.00 2.83
1914 1971 1.688197 CCACACAGCATTTTGTTCCCT 59.312 47.619 0.00 0.00 0.00 4.20
1930 1995 1.218316 CCTCGGTACTGGTTCTGCC 59.782 63.158 0.85 0.00 37.90 4.85
1936 2001 1.405661 GGTACTGGTTCTGCCACTAGC 60.406 57.143 0.00 0.00 43.61 3.42
1979 2044 6.647067 GGTGTACCTGCATAATAGAATCAGAC 59.353 42.308 0.00 0.00 0.00 3.51
2028 2093 9.709495 ATCTGCTTTTTGCTAAATAAATTGTGA 57.291 25.926 0.00 0.00 43.37 3.58
2038 2103 8.252417 TGCTAAATAAATTGTGAATCATGCACT 58.748 29.630 0.00 0.00 37.18 4.40
2046 2149 6.762702 TTGTGAATCATGCACTGTTATGAT 57.237 33.333 0.00 10.08 43.79 2.45
2343 2447 9.638176 AAATATCTGATTTTCCTGCTAGATGTT 57.362 29.630 0.00 0.00 30.61 2.71
2350 2454 3.616956 TCCTGCTAGATGTTGTTCTGG 57.383 47.619 0.00 0.00 0.00 3.86
2415 2520 6.463995 TGTTCAGAACAAAATTAACTGGCT 57.536 33.333 13.90 0.00 38.72 4.75
2458 2563 6.127810 AGCAATACAAGTGCATATGAACAG 57.872 37.500 16.42 10.24 44.74 3.16
2460 2565 6.544931 AGCAATACAAGTGCATATGAACAGAT 59.455 34.615 16.42 3.09 44.74 2.90
2521 2626 4.929808 CCCTCCTATCCGAATTAATTGACG 59.070 45.833 5.17 3.90 0.00 4.35
2524 2629 4.748102 TCCTATCCGAATTAATTGACGCAC 59.252 41.667 5.17 0.00 0.00 5.34
2633 2760 7.282585 TCTCCTTCTGTTTTTCTTCTGATTGA 58.717 34.615 0.00 0.00 0.00 2.57
2862 2994 1.464997 GAAGGATGTGCCGACTTTCAC 59.535 52.381 0.00 0.00 43.43 3.18
2863 2995 0.396435 AGGATGTGCCGACTTTCACA 59.604 50.000 0.00 0.00 45.81 3.58
2941 3076 0.992802 GAAGCTGGAAGAAGTACGCG 59.007 55.000 3.53 3.53 34.07 6.01
2995 3130 7.217200 TCTTATTATCACATACAAGGAGTGCC 58.783 38.462 0.00 0.00 33.44 5.01
3084 3219 8.647796 TCAAATCCTATGGTTATAGACATCGTT 58.352 33.333 0.00 0.00 38.88 3.85
3129 3264 5.510690 CCTTGTGTGTGGATGTTAGTACTGA 60.511 44.000 5.39 0.00 0.00 3.41
3203 3338 4.557496 GCTGGTTGTGTTCTTTGGAAGATC 60.557 45.833 0.00 0.00 37.38 2.75
3210 3345 7.111247 TGTGTTCTTTGGAAGATCAAAATGT 57.889 32.000 0.00 0.00 38.54 2.71
3240 3375 3.193263 GTCATGTGATGTCAGCCTGTAG 58.807 50.000 0.00 0.00 0.00 2.74
3252 3387 0.761802 GCCTGTAGCTTATCCCTGCT 59.238 55.000 0.00 0.00 42.67 4.24
3268 3403 6.284891 TCCCTGCTATCCTTTGAATTTTTG 57.715 37.500 0.00 0.00 0.00 2.44
3285 3423 7.332926 TGAATTTTTGCACTTCTGCTTTTTGTA 59.667 29.630 0.00 0.00 44.57 2.41
3286 3424 7.608308 ATTTTTGCACTTCTGCTTTTTGTAA 57.392 28.000 0.00 0.00 44.57 2.41
3307 3445 3.374220 TGCCTTCTGTCATTTGCTTTG 57.626 42.857 0.00 0.00 0.00 2.77
3363 3501 9.311916 TGGTGTTTTCTTTTGATACAAAATGAG 57.688 29.630 9.52 0.52 0.00 2.90
3377 3515 3.328382 AAATGAGGCGCACTTACTGTA 57.672 42.857 10.83 0.00 0.00 2.74
3399 3537 8.317891 TGTACATTTGAAAAGAAAGATAGCGA 57.682 30.769 0.00 0.00 0.00 4.93
3407 3545 8.731275 TGAAAAGAAAGATAGCGATATTTGGA 57.269 30.769 4.06 0.00 0.00 3.53
3408 3546 8.612619 TGAAAAGAAAGATAGCGATATTTGGAC 58.387 33.333 4.06 0.00 0.00 4.02
3409 3547 7.497925 AAAGAAAGATAGCGATATTTGGACC 57.502 36.000 4.06 0.00 0.00 4.46
3410 3548 5.230942 AGAAAGATAGCGATATTTGGACCG 58.769 41.667 4.06 0.00 0.00 4.79
3411 3549 3.594603 AGATAGCGATATTTGGACCGG 57.405 47.619 0.00 0.00 0.00 5.28
3412 3550 3.162666 AGATAGCGATATTTGGACCGGA 58.837 45.455 9.46 0.00 0.00 5.14
3413 3551 3.576982 AGATAGCGATATTTGGACCGGAA 59.423 43.478 9.46 0.00 0.00 4.30
3414 3552 2.702592 AGCGATATTTGGACCGGAAA 57.297 45.000 9.46 0.00 0.00 3.13
3415 3553 3.208747 AGCGATATTTGGACCGGAAAT 57.791 42.857 9.46 6.65 0.00 2.17
3416 3554 3.139077 AGCGATATTTGGACCGGAAATC 58.861 45.455 9.46 0.00 0.00 2.17
3417 3555 2.225727 GCGATATTTGGACCGGAAATCC 59.774 50.000 9.46 5.31 36.70 3.01
3418 3556 3.472652 CGATATTTGGACCGGAAATCCA 58.527 45.455 9.46 8.67 44.74 3.41
3422 3560 3.948735 TGGACCGGAAATCCAACTC 57.051 52.632 9.46 0.00 43.43 3.01
3423 3561 0.036765 TGGACCGGAAATCCAACTCG 60.037 55.000 9.46 0.00 43.43 4.18
3424 3562 0.743345 GGACCGGAAATCCAACTCGG 60.743 60.000 9.46 0.00 45.42 4.63
3426 3564 2.466867 CCGGAAATCCAACTCGGTG 58.533 57.895 0.00 0.00 36.38 4.94
3427 3565 0.321298 CCGGAAATCCAACTCGGTGT 60.321 55.000 0.00 0.00 36.38 4.16
3428 3566 1.076332 CGGAAATCCAACTCGGTGTC 58.924 55.000 0.00 0.00 35.57 3.67
3429 3567 1.450025 GGAAATCCAACTCGGTGTCC 58.550 55.000 0.00 0.00 35.57 4.02
3430 3568 1.271163 GGAAATCCAACTCGGTGTCCA 60.271 52.381 0.00 0.00 35.57 4.02
3431 3569 2.076863 GAAATCCAACTCGGTGTCCAG 58.923 52.381 0.00 0.00 35.57 3.86
3432 3570 0.324943 AATCCAACTCGGTGTCCAGG 59.675 55.000 0.00 0.00 35.57 4.45
3433 3571 2.185310 ATCCAACTCGGTGTCCAGGC 62.185 60.000 0.00 0.00 35.57 4.85
3434 3572 2.743718 CAACTCGGTGTCCAGGCT 59.256 61.111 0.00 0.00 0.00 4.58
3435 3573 1.374758 CAACTCGGTGTCCAGGCTC 60.375 63.158 0.00 0.00 0.00 4.70
3436 3574 1.837051 AACTCGGTGTCCAGGCTCA 60.837 57.895 0.00 0.00 0.00 4.26
3437 3575 1.194781 AACTCGGTGTCCAGGCTCAT 61.195 55.000 0.00 0.00 0.00 2.90
3438 3576 1.142748 CTCGGTGTCCAGGCTCATC 59.857 63.158 0.00 0.00 0.00 2.92
3439 3577 1.305297 TCGGTGTCCAGGCTCATCT 60.305 57.895 0.00 0.00 0.00 2.90
3440 3578 1.153489 CGGTGTCCAGGCTCATCTG 60.153 63.158 0.00 0.00 34.70 2.90
3441 3579 1.451028 GGTGTCCAGGCTCATCTGC 60.451 63.158 0.00 0.00 33.64 4.26
3442 3580 1.601171 GTGTCCAGGCTCATCTGCT 59.399 57.895 0.00 0.00 33.64 4.24
3443 3581 0.461693 GTGTCCAGGCTCATCTGCTC 60.462 60.000 0.00 0.00 33.64 4.26
3444 3582 1.145819 GTCCAGGCTCATCTGCTCC 59.854 63.158 0.00 0.00 33.64 4.70
3445 3583 2.068821 TCCAGGCTCATCTGCTCCC 61.069 63.158 0.00 0.00 33.64 4.30
3446 3584 2.372890 CCAGGCTCATCTGCTCCCA 61.373 63.158 0.00 0.00 33.64 4.37
3447 3585 1.153208 CAGGCTCATCTGCTCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
3448 3586 1.306825 AGGCTCATCTGCTCCCACT 60.307 57.895 0.00 0.00 0.00 4.00
3449 3587 1.145819 GGCTCATCTGCTCCCACTC 59.854 63.158 0.00 0.00 0.00 3.51
3450 3588 1.620739 GGCTCATCTGCTCCCACTCA 61.621 60.000 0.00 0.00 0.00 3.41
3451 3589 0.179078 GCTCATCTGCTCCCACTCAG 60.179 60.000 0.00 0.00 0.00 3.35
3452 3590 1.482954 CTCATCTGCTCCCACTCAGA 58.517 55.000 0.00 0.00 42.72 3.27
3453 3591 1.829849 CTCATCTGCTCCCACTCAGAA 59.170 52.381 0.00 0.00 41.96 3.02
3454 3592 2.235650 CTCATCTGCTCCCACTCAGAAA 59.764 50.000 0.00 0.00 41.96 2.52
3455 3593 2.639347 TCATCTGCTCCCACTCAGAAAA 59.361 45.455 0.00 0.00 41.96 2.29
3456 3594 3.072915 TCATCTGCTCCCACTCAGAAAAA 59.927 43.478 0.00 0.00 41.96 1.94
3524 3662 9.447157 TTGTGTGATAGATAATTTGATGTGTGA 57.553 29.630 0.00 0.00 0.00 3.58
3525 3663 9.101655 TGTGTGATAGATAATTTGATGTGTGAG 57.898 33.333 0.00 0.00 0.00 3.51
3526 3664 8.554528 GTGTGATAGATAATTTGATGTGTGAGG 58.445 37.037 0.00 0.00 0.00 3.86
3527 3665 8.267183 TGTGATAGATAATTTGATGTGTGAGGT 58.733 33.333 0.00 0.00 0.00 3.85
3528 3666 8.768955 GTGATAGATAATTTGATGTGTGAGGTC 58.231 37.037 0.00 0.00 0.00 3.85
3529 3667 7.933577 TGATAGATAATTTGATGTGTGAGGTCC 59.066 37.037 0.00 0.00 0.00 4.46
3530 3668 5.118990 AGATAATTTGATGTGTGAGGTCCG 58.881 41.667 0.00 0.00 0.00 4.79
3531 3669 2.859165 ATTTGATGTGTGAGGTCCGT 57.141 45.000 0.00 0.00 0.00 4.69
3532 3670 2.631160 TTTGATGTGTGAGGTCCGTT 57.369 45.000 0.00 0.00 0.00 4.44
3533 3671 2.163818 TTGATGTGTGAGGTCCGTTC 57.836 50.000 0.00 0.00 0.00 3.95
3534 3672 0.320374 TGATGTGTGAGGTCCGTTCC 59.680 55.000 0.00 0.00 0.00 3.62
3535 3673 0.320374 GATGTGTGAGGTCCGTTCCA 59.680 55.000 0.00 0.00 0.00 3.53
3536 3674 0.762418 ATGTGTGAGGTCCGTTCCAA 59.238 50.000 0.00 0.00 0.00 3.53
3537 3675 0.542333 TGTGTGAGGTCCGTTCCAAA 59.458 50.000 0.00 0.00 0.00 3.28
3538 3676 1.142060 TGTGTGAGGTCCGTTCCAAAT 59.858 47.619 0.00 0.00 0.00 2.32
3539 3677 2.227194 GTGTGAGGTCCGTTCCAAATT 58.773 47.619 0.00 0.00 0.00 1.82
3540 3678 2.621526 GTGTGAGGTCCGTTCCAAATTT 59.378 45.455 0.00 0.00 0.00 1.82
3541 3679 3.067601 GTGTGAGGTCCGTTCCAAATTTT 59.932 43.478 0.00 0.00 0.00 1.82
3542 3680 3.067461 TGTGAGGTCCGTTCCAAATTTTG 59.933 43.478 1.99 1.99 0.00 2.44
3543 3681 3.316868 GTGAGGTCCGTTCCAAATTTTGA 59.683 43.478 10.72 0.00 0.00 2.69
3544 3682 4.022329 GTGAGGTCCGTTCCAAATTTTGAT 60.022 41.667 10.72 0.00 0.00 2.57
3545 3683 4.586841 TGAGGTCCGTTCCAAATTTTGATT 59.413 37.500 10.72 0.00 0.00 2.57
3546 3684 5.134202 AGGTCCGTTCCAAATTTTGATTC 57.866 39.130 10.72 0.22 0.00 2.52
3547 3685 4.586841 AGGTCCGTTCCAAATTTTGATTCA 59.413 37.500 10.72 0.00 0.00 2.57
3548 3686 5.245977 AGGTCCGTTCCAAATTTTGATTCAT 59.754 36.000 10.72 0.00 0.00 2.57
3549 3687 5.931724 GGTCCGTTCCAAATTTTGATTCATT 59.068 36.000 10.72 0.00 0.00 2.57
3550 3688 6.426633 GGTCCGTTCCAAATTTTGATTCATTT 59.573 34.615 10.72 0.00 0.00 2.32
3551 3689 7.290118 GTCCGTTCCAAATTTTGATTCATTTG 58.710 34.615 10.72 4.83 39.25 2.32
3560 3698 9.263538 CAAATTTTGATTCATTTGGACTTCTGA 57.736 29.630 2.88 0.00 36.93 3.27
3561 3699 9.485206 AAATTTTGATTCATTTGGACTTCTGAG 57.515 29.630 0.00 0.00 0.00 3.35
3562 3700 5.633830 TTGATTCATTTGGACTTCTGAGC 57.366 39.130 0.00 0.00 0.00 4.26
3563 3701 4.654915 TGATTCATTTGGACTTCTGAGCA 58.345 39.130 0.00 0.00 0.00 4.26
3564 3702 4.698780 TGATTCATTTGGACTTCTGAGCAG 59.301 41.667 0.00 0.00 0.00 4.24
3565 3703 2.430465 TCATTTGGACTTCTGAGCAGC 58.570 47.619 0.00 0.00 0.00 5.25
3566 3704 2.039480 TCATTTGGACTTCTGAGCAGCT 59.961 45.455 0.00 0.00 0.00 4.24
3567 3705 2.175878 TTTGGACTTCTGAGCAGCTC 57.824 50.000 16.21 16.21 0.00 4.09
3568 3706 1.346062 TTGGACTTCTGAGCAGCTCT 58.654 50.000 23.15 2.04 0.00 4.09
3569 3707 0.894141 TGGACTTCTGAGCAGCTCTC 59.106 55.000 23.15 11.57 42.23 3.20
3570 3708 0.179140 GGACTTCTGAGCAGCTCTCG 60.179 60.000 23.15 13.93 44.86 4.04
3572 3710 1.519013 CTTCTGAGCAGCTCTCGGC 60.519 63.158 23.15 0.00 45.76 5.54
3573 3711 2.223200 CTTCTGAGCAGCTCTCGGCA 62.223 60.000 23.15 2.15 45.76 5.69
3574 3712 1.820010 TTCTGAGCAGCTCTCGGCAA 61.820 55.000 23.15 6.06 45.76 4.52
3575 3713 1.375140 CTGAGCAGCTCTCGGCAAA 60.375 57.895 23.15 0.00 44.86 3.68
3576 3714 0.952497 CTGAGCAGCTCTCGGCAAAA 60.952 55.000 23.15 0.00 44.86 2.44
3577 3715 0.534877 TGAGCAGCTCTCGGCAAAAA 60.535 50.000 23.15 0.00 44.86 1.94
3597 3735 5.930837 AAAAGACAAATTGGGTCAGAACA 57.069 34.783 11.72 0.00 37.74 3.18
3598 3736 5.520376 AAAGACAAATTGGGTCAGAACAG 57.480 39.130 11.72 0.00 37.74 3.16
3599 3737 4.170468 AGACAAATTGGGTCAGAACAGT 57.830 40.909 11.72 0.00 37.74 3.55
3600 3738 3.885297 AGACAAATTGGGTCAGAACAGTG 59.115 43.478 11.72 0.00 37.74 3.66
3601 3739 2.362077 ACAAATTGGGTCAGAACAGTGC 59.638 45.455 0.00 0.00 0.00 4.40
3602 3740 1.238439 AATTGGGTCAGAACAGTGCG 58.762 50.000 0.00 0.00 0.00 5.34
3603 3741 0.108585 ATTGGGTCAGAACAGTGCGT 59.891 50.000 0.00 0.00 0.00 5.24
3604 3742 0.813610 TTGGGTCAGAACAGTGCGTG 60.814 55.000 0.00 0.00 0.00 5.34
3605 3743 1.069090 GGGTCAGAACAGTGCGTGA 59.931 57.895 0.00 0.00 0.00 4.35
3606 3744 0.531974 GGGTCAGAACAGTGCGTGAA 60.532 55.000 0.00 0.00 0.00 3.18
3607 3745 1.512926 GGTCAGAACAGTGCGTGAAT 58.487 50.000 0.00 0.00 0.00 2.57
3608 3746 2.611971 GGGTCAGAACAGTGCGTGAATA 60.612 50.000 0.00 0.00 0.00 1.75
3609 3747 2.668457 GGTCAGAACAGTGCGTGAATAG 59.332 50.000 0.00 0.00 0.00 1.73
3610 3748 3.318017 GTCAGAACAGTGCGTGAATAGT 58.682 45.455 0.00 0.00 0.00 2.12
3611 3749 4.482386 GTCAGAACAGTGCGTGAATAGTA 58.518 43.478 0.00 0.00 0.00 1.82
3612 3750 4.921515 GTCAGAACAGTGCGTGAATAGTAA 59.078 41.667 0.00 0.00 0.00 2.24
3613 3751 5.404366 GTCAGAACAGTGCGTGAATAGTAAA 59.596 40.000 0.00 0.00 0.00 2.01
3614 3752 5.404366 TCAGAACAGTGCGTGAATAGTAAAC 59.596 40.000 0.00 0.00 0.00 2.01
3615 3753 5.405571 CAGAACAGTGCGTGAATAGTAAACT 59.594 40.000 0.00 0.00 0.00 2.66
3616 3754 5.405571 AGAACAGTGCGTGAATAGTAAACTG 59.594 40.000 0.00 0.00 39.49 3.16
3617 3755 4.628074 ACAGTGCGTGAATAGTAAACTGT 58.372 39.130 0.00 0.00 41.31 3.55
3618 3756 5.054477 ACAGTGCGTGAATAGTAAACTGTT 58.946 37.500 0.00 0.00 42.98 3.16
3619 3757 5.526111 ACAGTGCGTGAATAGTAAACTGTTT 59.474 36.000 10.98 10.98 42.98 2.83
3620 3758 6.037830 ACAGTGCGTGAATAGTAAACTGTTTT 59.962 34.615 11.48 0.00 42.98 2.43
3621 3759 7.225145 ACAGTGCGTGAATAGTAAACTGTTTTA 59.775 33.333 11.48 0.00 42.98 1.52
3622 3760 8.227791 CAGTGCGTGAATAGTAAACTGTTTTAT 58.772 33.333 11.48 1.60 29.82 1.40
3623 3761 9.426837 AGTGCGTGAATAGTAAACTGTTTTATA 57.573 29.630 11.48 5.48 29.82 0.98
3624 3762 9.685005 GTGCGTGAATAGTAAACTGTTTTATAG 57.315 33.333 11.48 0.12 29.82 1.31
3625 3763 9.642327 TGCGTGAATAGTAAACTGTTTTATAGA 57.358 29.630 11.48 0.00 29.82 1.98
3626 3764 9.897349 GCGTGAATAGTAAACTGTTTTATAGAC 57.103 33.333 11.48 3.18 29.82 2.59
3637 3775 8.706322 AACTGTTTTATAGACCCTGAATTTGT 57.294 30.769 0.00 0.00 0.00 2.83
3638 3776 8.336801 ACTGTTTTATAGACCCTGAATTTGTC 57.663 34.615 0.00 0.00 0.00 3.18
3639 3777 8.164070 ACTGTTTTATAGACCCTGAATTTGTCT 58.836 33.333 0.00 0.00 41.88 3.41
3640 3778 8.934023 TGTTTTATAGACCCTGAATTTGTCTT 57.066 30.769 0.00 0.00 39.84 3.01
3641 3779 9.362151 TGTTTTATAGACCCTGAATTTGTCTTT 57.638 29.630 0.00 0.00 39.84 2.52
3663 3801 5.633830 TTTTGCCAAGAGCTTCTTAGATG 57.366 39.130 0.00 0.00 44.23 2.90
3664 3802 3.988976 TGCCAAGAGCTTCTTAGATGT 57.011 42.857 0.00 0.00 44.23 3.06
3665 3803 5.420725 TTGCCAAGAGCTTCTTAGATGTA 57.579 39.130 0.00 0.00 44.23 2.29
3666 3804 4.759782 TGCCAAGAGCTTCTTAGATGTAC 58.240 43.478 0.00 0.00 44.23 2.90
3667 3805 4.222810 TGCCAAGAGCTTCTTAGATGTACA 59.777 41.667 0.00 0.00 44.23 2.90
3668 3806 5.178797 GCCAAGAGCTTCTTAGATGTACAA 58.821 41.667 0.00 0.00 33.78 2.41
3669 3807 5.643777 GCCAAGAGCTTCTTAGATGTACAAA 59.356 40.000 0.00 0.00 33.78 2.83
3670 3808 6.317391 GCCAAGAGCTTCTTAGATGTACAAAT 59.683 38.462 0.00 0.00 33.78 2.32
3671 3809 7.678218 GCCAAGAGCTTCTTAGATGTACAAATG 60.678 40.741 0.00 0.00 33.78 2.32
3672 3810 7.550551 CCAAGAGCTTCTTAGATGTACAAATGA 59.449 37.037 0.00 0.00 33.78 2.57
3673 3811 8.602328 CAAGAGCTTCTTAGATGTACAAATGAG 58.398 37.037 0.00 0.00 33.78 2.90
3674 3812 7.846066 AGAGCTTCTTAGATGTACAAATGAGT 58.154 34.615 0.00 0.00 0.00 3.41
3675 3813 8.317679 AGAGCTTCTTAGATGTACAAATGAGTT 58.682 33.333 0.00 0.00 0.00 3.01
3676 3814 8.261492 AGCTTCTTAGATGTACAAATGAGTTG 57.739 34.615 0.00 0.00 43.43 3.16
3677 3815 8.097038 AGCTTCTTAGATGTACAAATGAGTTGA 58.903 33.333 0.00 0.00 39.87 3.18
3678 3816 8.721478 GCTTCTTAGATGTACAAATGAGTTGAA 58.279 33.333 0.00 0.00 39.87 2.69
3685 3823 8.859090 AGATGTACAAATGAGTTGAAATTTGGA 58.141 29.630 0.00 1.72 44.45 3.53
3686 3824 9.132521 GATGTACAAATGAGTTGAAATTTGGAG 57.867 33.333 0.00 0.00 44.45 3.86
3687 3825 6.922957 TGTACAAATGAGTTGAAATTTGGAGC 59.077 34.615 0.00 3.72 44.45 4.70
3688 3826 4.984161 ACAAATGAGTTGAAATTTGGAGCG 59.016 37.500 0.00 0.00 44.45 5.03
3689 3827 3.855689 ATGAGTTGAAATTTGGAGCGG 57.144 42.857 0.00 0.00 0.00 5.52
3690 3828 2.857483 TGAGTTGAAATTTGGAGCGGA 58.143 42.857 0.00 0.00 0.00 5.54
3691 3829 2.552315 TGAGTTGAAATTTGGAGCGGAC 59.448 45.455 0.00 0.00 0.00 4.79
3692 3830 1.886542 AGTTGAAATTTGGAGCGGACC 59.113 47.619 0.00 0.00 0.00 4.46
3693 3831 1.886542 GTTGAAATTTGGAGCGGACCT 59.113 47.619 0.00 0.00 0.00 3.85
3694 3832 1.821216 TGAAATTTGGAGCGGACCTC 58.179 50.000 0.00 0.00 39.98 3.85
3695 3833 1.073125 TGAAATTTGGAGCGGACCTCA 59.927 47.619 0.00 0.00 42.62 3.86
3696 3834 1.468914 GAAATTTGGAGCGGACCTCAC 59.531 52.381 0.00 0.00 42.62 3.51
3697 3835 0.673644 AATTTGGAGCGGACCTCACG 60.674 55.000 0.00 0.00 42.62 4.35
3704 3842 4.277239 CGGACCTCACGCATCAAA 57.723 55.556 0.00 0.00 0.00 2.69
3705 3843 2.767536 CGGACCTCACGCATCAAAT 58.232 52.632 0.00 0.00 0.00 2.32
3706 3844 0.652592 CGGACCTCACGCATCAAATC 59.347 55.000 0.00 0.00 0.00 2.17
3707 3845 1.737838 GGACCTCACGCATCAAATCA 58.262 50.000 0.00 0.00 0.00 2.57
3708 3846 2.292267 GGACCTCACGCATCAAATCAT 58.708 47.619 0.00 0.00 0.00 2.45
3709 3847 2.289002 GGACCTCACGCATCAAATCATC 59.711 50.000 0.00 0.00 0.00 2.92
3710 3848 3.201290 GACCTCACGCATCAAATCATCT 58.799 45.455 0.00 0.00 0.00 2.90
3711 3849 4.371786 GACCTCACGCATCAAATCATCTA 58.628 43.478 0.00 0.00 0.00 1.98
3712 3850 4.965814 ACCTCACGCATCAAATCATCTAT 58.034 39.130 0.00 0.00 0.00 1.98
3713 3851 4.993584 ACCTCACGCATCAAATCATCTATC 59.006 41.667 0.00 0.00 0.00 2.08
3714 3852 4.992951 CCTCACGCATCAAATCATCTATCA 59.007 41.667 0.00 0.00 0.00 2.15
3715 3853 5.107182 CCTCACGCATCAAATCATCTATCAC 60.107 44.000 0.00 0.00 0.00 3.06
3716 3854 5.358922 TCACGCATCAAATCATCTATCACA 58.641 37.500 0.00 0.00 0.00 3.58
3717 3855 5.816777 TCACGCATCAAATCATCTATCACAA 59.183 36.000 0.00 0.00 0.00 3.33
3718 3856 6.315891 TCACGCATCAAATCATCTATCACAAA 59.684 34.615 0.00 0.00 0.00 2.83
3719 3857 6.968335 CACGCATCAAATCATCTATCACAAAA 59.032 34.615 0.00 0.00 0.00 2.44
3720 3858 7.485595 CACGCATCAAATCATCTATCACAAAAA 59.514 33.333 0.00 0.00 0.00 1.94
3780 3918 1.357334 TTTTTCTGAACGCGGGTGC 59.643 52.632 12.47 4.28 37.91 5.01
3781 3919 1.377366 TTTTTCTGAACGCGGGTGCA 61.377 50.000 13.38 13.38 42.97 4.57
3785 3923 2.741985 TGAACGCGGGTGCAGATG 60.742 61.111 9.64 0.00 42.97 2.90
3786 3924 2.434185 GAACGCGGGTGCAGATGA 60.434 61.111 12.47 0.00 42.97 2.92
3787 3925 2.434884 AACGCGGGTGCAGATGAG 60.435 61.111 12.47 0.00 42.97 2.90
3790 3928 3.200593 GCGGGTGCAGATGAGCAG 61.201 66.667 0.00 0.00 46.69 4.24
3791 3929 2.580815 CGGGTGCAGATGAGCAGA 59.419 61.111 0.00 0.00 46.69 4.26
3792 3930 1.521010 CGGGTGCAGATGAGCAGAG 60.521 63.158 0.00 0.00 46.69 3.35
3793 3931 1.818785 GGGTGCAGATGAGCAGAGC 60.819 63.158 0.00 0.00 46.69 4.09
3794 3932 1.078637 GGTGCAGATGAGCAGAGCA 60.079 57.895 0.00 0.00 46.69 4.26
3795 3933 1.090625 GGTGCAGATGAGCAGAGCAG 61.091 60.000 0.00 0.00 46.69 4.24
3796 3934 0.108281 GTGCAGATGAGCAGAGCAGA 60.108 55.000 0.00 0.00 46.69 4.26
3797 3935 0.611714 TGCAGATGAGCAGAGCAGAA 59.388 50.000 0.00 0.00 40.11 3.02
3798 3936 1.002773 TGCAGATGAGCAGAGCAGAAA 59.997 47.619 0.00 0.00 40.11 2.52
3799 3937 1.397692 GCAGATGAGCAGAGCAGAAAC 59.602 52.381 0.00 0.00 0.00 2.78
3800 3938 2.008329 CAGATGAGCAGAGCAGAAACC 58.992 52.381 0.00 0.00 0.00 3.27
3801 3939 1.065564 AGATGAGCAGAGCAGAAACCC 60.066 52.381 0.00 0.00 0.00 4.11
3802 3940 0.990374 ATGAGCAGAGCAGAAACCCT 59.010 50.000 0.00 0.00 0.00 4.34
3803 3941 0.035881 TGAGCAGAGCAGAAACCCTG 59.964 55.000 0.00 0.00 45.67 4.45
3804 3942 0.036022 GAGCAGAGCAGAAACCCTGT 59.964 55.000 0.00 0.00 44.71 4.00
3805 3943 0.250640 AGCAGAGCAGAAACCCTGTG 60.251 55.000 0.00 0.00 44.71 3.66
3806 3944 0.536006 GCAGAGCAGAAACCCTGTGT 60.536 55.000 0.00 0.00 44.71 3.72
3807 3945 1.517242 CAGAGCAGAAACCCTGTGTC 58.483 55.000 0.00 0.00 44.71 3.67
3808 3946 0.398318 AGAGCAGAAACCCTGTGTCC 59.602 55.000 0.00 0.00 44.71 4.02
3809 3947 0.398318 GAGCAGAAACCCTGTGTCCT 59.602 55.000 0.00 0.00 44.71 3.85
3810 3948 1.623811 GAGCAGAAACCCTGTGTCCTA 59.376 52.381 0.00 0.00 44.71 2.94
3811 3949 2.237392 GAGCAGAAACCCTGTGTCCTAT 59.763 50.000 0.00 0.00 44.71 2.57
3812 3950 2.644798 AGCAGAAACCCTGTGTCCTATT 59.355 45.455 0.00 0.00 44.71 1.73
3813 3951 3.074538 AGCAGAAACCCTGTGTCCTATTT 59.925 43.478 0.00 0.00 44.71 1.40
3814 3952 3.191371 GCAGAAACCCTGTGTCCTATTTG 59.809 47.826 0.00 0.00 44.71 2.32
3815 3953 3.758554 CAGAAACCCTGTGTCCTATTTGG 59.241 47.826 0.00 0.00 38.10 3.28
3816 3954 3.655777 AGAAACCCTGTGTCCTATTTGGA 59.344 43.478 0.00 0.00 43.86 3.53
3846 3984 1.674359 TGTGCAACAGGTAACCAGTG 58.326 50.000 0.00 0.00 45.67 3.66
3847 3985 0.310854 GTGCAACAGGTAACCAGTGC 59.689 55.000 0.00 0.00 36.32 4.40
3848 3986 0.182537 TGCAACAGGTAACCAGTGCT 59.817 50.000 0.00 0.00 37.17 4.40
3849 3987 1.318576 GCAACAGGTAACCAGTGCTT 58.681 50.000 0.00 0.00 37.17 3.91
3850 3988 1.001378 GCAACAGGTAACCAGTGCTTG 60.001 52.381 0.00 0.00 37.17 4.01
3851 3989 2.571212 CAACAGGTAACCAGTGCTTGA 58.429 47.619 0.00 0.00 37.17 3.02
3852 3990 2.549754 CAACAGGTAACCAGTGCTTGAG 59.450 50.000 0.00 0.00 37.17 3.02
3853 3991 1.072331 ACAGGTAACCAGTGCTTGAGG 59.928 52.381 0.00 0.00 37.17 3.86
3854 3992 0.036875 AGGTAACCAGTGCTTGAGGC 59.963 55.000 0.00 0.00 38.56 4.70
3855 3993 2.662357 AGGTAACCAGTGCTTGAGGCA 61.662 52.381 0.00 0.00 44.27 4.75
3865 4003 2.838386 GCTTGAGGCATATGTGTGTG 57.162 50.000 4.29 0.00 41.35 3.82
3866 4004 2.086869 GCTTGAGGCATATGTGTGTGT 58.913 47.619 4.29 0.00 41.35 3.72
3867 4005 2.489329 GCTTGAGGCATATGTGTGTGTT 59.511 45.455 4.29 0.00 41.35 3.32
3868 4006 3.689161 GCTTGAGGCATATGTGTGTGTTA 59.311 43.478 4.29 0.00 41.35 2.41
3869 4007 4.155826 GCTTGAGGCATATGTGTGTGTTAA 59.844 41.667 4.29 0.00 41.35 2.01
3870 4008 5.335583 GCTTGAGGCATATGTGTGTGTTAAA 60.336 40.000 4.29 0.00 41.35 1.52
3871 4009 5.878332 TGAGGCATATGTGTGTGTTAAAG 57.122 39.130 4.29 0.00 0.00 1.85
3872 4010 5.555966 TGAGGCATATGTGTGTGTTAAAGA 58.444 37.500 4.29 0.00 0.00 2.52
3873 4011 6.000840 TGAGGCATATGTGTGTGTTAAAGAA 58.999 36.000 4.29 0.00 0.00 2.52
3874 4012 6.488344 TGAGGCATATGTGTGTGTTAAAGAAA 59.512 34.615 4.29 0.00 0.00 2.52
3875 4013 6.913170 AGGCATATGTGTGTGTTAAAGAAAG 58.087 36.000 4.29 0.00 0.00 2.62
3876 4014 6.490040 AGGCATATGTGTGTGTTAAAGAAAGT 59.510 34.615 4.29 0.00 0.00 2.66
3877 4015 6.582295 GGCATATGTGTGTGTTAAAGAAAGTG 59.418 38.462 4.29 0.00 0.00 3.16
3878 4016 7.138736 GCATATGTGTGTGTTAAAGAAAGTGT 58.861 34.615 4.29 0.00 0.00 3.55
3879 4017 7.113404 GCATATGTGTGTGTTAAAGAAAGTGTG 59.887 37.037 4.29 0.00 0.00 3.82
3880 4018 6.751514 ATGTGTGTGTTAAAGAAAGTGTGA 57.248 33.333 0.00 0.00 0.00 3.58
3881 4019 6.176975 TGTGTGTGTTAAAGAAAGTGTGAG 57.823 37.500 0.00 0.00 0.00 3.51
3882 4020 5.123186 TGTGTGTGTTAAAGAAAGTGTGAGG 59.877 40.000 0.00 0.00 0.00 3.86
3883 4021 4.095782 TGTGTGTTAAAGAAAGTGTGAGGC 59.904 41.667 0.00 0.00 0.00 4.70
3884 4022 4.095782 GTGTGTTAAAGAAAGTGTGAGGCA 59.904 41.667 0.00 0.00 0.00 4.75
3885 4023 4.702612 TGTGTTAAAGAAAGTGTGAGGCAA 59.297 37.500 0.00 0.00 0.00 4.52
3886 4024 5.184096 TGTGTTAAAGAAAGTGTGAGGCAAA 59.816 36.000 0.00 0.00 0.00 3.68
3887 4025 6.096695 GTGTTAAAGAAAGTGTGAGGCAAAA 58.903 36.000 0.00 0.00 0.00 2.44
3888 4026 6.588373 GTGTTAAAGAAAGTGTGAGGCAAAAA 59.412 34.615 0.00 0.00 0.00 1.94
3889 4027 7.277760 GTGTTAAAGAAAGTGTGAGGCAAAAAT 59.722 33.333 0.00 0.00 0.00 1.82
3890 4028 7.277539 TGTTAAAGAAAGTGTGAGGCAAAAATG 59.722 33.333 0.00 0.00 0.00 2.32
3891 4029 5.343307 AAGAAAGTGTGAGGCAAAAATGT 57.657 34.783 0.00 0.00 0.00 2.71
3892 4030 4.685924 AGAAAGTGTGAGGCAAAAATGTG 58.314 39.130 0.00 0.00 0.00 3.21
3893 4031 4.160252 AGAAAGTGTGAGGCAAAAATGTGT 59.840 37.500 0.00 0.00 0.00 3.72
3894 4032 3.441496 AGTGTGAGGCAAAAATGTGTG 57.559 42.857 0.00 0.00 0.00 3.82
3895 4033 2.760092 AGTGTGAGGCAAAAATGTGTGT 59.240 40.909 0.00 0.00 0.00 3.72
3896 4034 3.195396 AGTGTGAGGCAAAAATGTGTGTT 59.805 39.130 0.00 0.00 0.00 3.32
3897 4035 4.400884 AGTGTGAGGCAAAAATGTGTGTTA 59.599 37.500 0.00 0.00 0.00 2.41
3898 4036 5.105554 AGTGTGAGGCAAAAATGTGTGTTAA 60.106 36.000 0.00 0.00 0.00 2.01
3899 4037 5.578727 GTGTGAGGCAAAAATGTGTGTTAAA 59.421 36.000 0.00 0.00 0.00 1.52
3900 4038 5.578727 TGTGAGGCAAAAATGTGTGTTAAAC 59.421 36.000 0.00 0.00 0.00 2.01
3901 4039 4.800993 TGAGGCAAAAATGTGTGTTAAACG 59.199 37.500 0.00 0.00 0.00 3.60
3902 4040 5.000012 AGGCAAAAATGTGTGTTAAACGA 58.000 34.783 0.00 0.00 0.00 3.85
3903 4041 5.411781 AGGCAAAAATGTGTGTTAAACGAA 58.588 33.333 0.00 0.00 0.00 3.85
3904 4042 5.869888 AGGCAAAAATGTGTGTTAAACGAAA 59.130 32.000 0.00 0.00 0.00 3.46
3905 4043 6.369065 AGGCAAAAATGTGTGTTAAACGAAAA 59.631 30.769 0.00 0.00 0.00 2.29
3906 4044 6.463262 GGCAAAAATGTGTGTTAAACGAAAAC 59.537 34.615 0.00 0.00 0.00 2.43
3907 4045 7.010023 GCAAAAATGTGTGTTAAACGAAAACA 58.990 30.769 0.00 0.00 34.56 2.83
3908 4046 7.530861 GCAAAAATGTGTGTTAAACGAAAACAA 59.469 29.630 0.00 0.00 38.50 2.83
3909 4047 9.035338 CAAAAATGTGTGTTAAACGAAAACAAG 57.965 29.630 0.00 0.00 38.50 3.16
3910 4048 8.522178 AAAATGTGTGTTAAACGAAAACAAGA 57.478 26.923 0.00 0.00 38.50 3.02
3911 4049 8.522178 AAATGTGTGTTAAACGAAAACAAGAA 57.478 26.923 0.00 0.00 38.50 2.52
3912 4050 8.522178 AATGTGTGTTAAACGAAAACAAGAAA 57.478 26.923 0.00 0.00 38.50 2.52
3913 4051 7.925703 TGTGTGTTAAACGAAAACAAGAAAA 57.074 28.000 0.00 0.00 38.50 2.29
3914 4052 7.775504 TGTGTGTTAAACGAAAACAAGAAAAC 58.224 30.769 0.00 0.00 38.50 2.43
3915 4053 6.938436 GTGTGTTAAACGAAAACAAGAAAACG 59.062 34.615 0.00 0.00 38.50 3.60
3916 4054 6.636044 TGTGTTAAACGAAAACAAGAAAACGT 59.364 30.769 0.00 0.00 38.50 3.99
3917 4055 7.167136 TGTGTTAAACGAAAACAAGAAAACGTT 59.833 29.630 0.00 0.00 43.76 3.99
3918 4056 8.625726 GTGTTAAACGAAAACAAGAAAACGTTA 58.374 29.630 0.00 0.00 41.72 3.18
3919 4057 8.625726 TGTTAAACGAAAACAAGAAAACGTTAC 58.374 29.630 0.00 0.00 41.72 2.50
3920 4058 8.625726 GTTAAACGAAAACAAGAAAACGTTACA 58.374 29.630 0.00 0.00 41.72 2.41
3921 4059 7.620397 AAACGAAAACAAGAAAACGTTACAA 57.380 28.000 0.00 0.00 41.72 2.41
3922 4060 6.842081 ACGAAAACAAGAAAACGTTACAAG 57.158 33.333 0.00 0.00 0.00 3.16
3923 4061 5.796437 ACGAAAACAAGAAAACGTTACAAGG 59.204 36.000 0.00 0.00 0.00 3.61
3924 4062 5.796437 CGAAAACAAGAAAACGTTACAAGGT 59.204 36.000 0.00 0.00 0.00 3.50
3925 4063 6.306117 CGAAAACAAGAAAACGTTACAAGGTT 59.694 34.615 0.00 1.40 38.51 3.50
3926 4064 7.148934 CGAAAACAAGAAAACGTTACAAGGTTT 60.149 33.333 0.00 7.76 45.60 3.27
3948 4086 6.994421 TTTTTGGGAGCCTTCTCTTATTTT 57.006 33.333 0.00 0.00 39.31 1.82
3949 4087 6.590234 TTTTGGGAGCCTTCTCTTATTTTC 57.410 37.500 0.00 0.00 39.31 2.29
3950 4088 4.927267 TGGGAGCCTTCTCTTATTTTCA 57.073 40.909 0.00 0.00 39.31 2.69
3951 4089 5.255397 TGGGAGCCTTCTCTTATTTTCAA 57.745 39.130 0.00 0.00 39.31 2.69
3952 4090 5.640147 TGGGAGCCTTCTCTTATTTTCAAA 58.360 37.500 0.00 0.00 39.31 2.69
3953 4091 6.256053 TGGGAGCCTTCTCTTATTTTCAAAT 58.744 36.000 0.00 0.00 39.31 2.32
3954 4092 6.725834 TGGGAGCCTTCTCTTATTTTCAAATT 59.274 34.615 0.00 0.00 39.31 1.82
3955 4093 7.093771 TGGGAGCCTTCTCTTATTTTCAAATTC 60.094 37.037 0.00 0.00 39.31 2.17
3956 4094 6.969473 GGAGCCTTCTCTTATTTTCAAATTCG 59.031 38.462 0.00 0.00 39.31 3.34
3957 4095 6.325596 AGCCTTCTCTTATTTTCAAATTCGC 58.674 36.000 0.00 0.00 0.00 4.70
3958 4096 6.151817 AGCCTTCTCTTATTTTCAAATTCGCT 59.848 34.615 0.00 0.00 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.118101 GCAAAGCAGAAATGAATATTGAAACCA 59.882 33.333 0.00 0.00 0.00 3.67
1 2 7.118101 TGCAAAGCAGAAATGAATATTGAAACC 59.882 33.333 0.00 0.00 33.32 3.27
2 3 8.020861 TGCAAAGCAGAAATGAATATTGAAAC 57.979 30.769 0.00 0.00 33.32 2.78
3 4 8.604640 TTGCAAAGCAGAAATGAATATTGAAA 57.395 26.923 0.00 0.00 40.61 2.69
4 5 8.604640 TTTGCAAAGCAGAAATGAATATTGAA 57.395 26.923 8.05 0.00 40.61 2.69
5 6 8.604640 TTTTGCAAAGCAGAAATGAATATTGA 57.395 26.923 12.41 0.00 40.61 2.57
43 44 5.869579 ACAGAATCGGGTGCTATCATATTT 58.130 37.500 0.00 0.00 0.00 1.40
44 45 5.489792 ACAGAATCGGGTGCTATCATATT 57.510 39.130 0.00 0.00 0.00 1.28
49 50 2.034305 ACGTACAGAATCGGGTGCTATC 59.966 50.000 0.00 0.00 0.00 2.08
59 60 2.027688 CGGAGCGAAAACGTACAGAATC 59.972 50.000 0.00 0.00 0.00 2.52
60 61 1.990563 CGGAGCGAAAACGTACAGAAT 59.009 47.619 0.00 0.00 0.00 2.40
97 98 7.560991 TGGGATGTTAGATAGAAACCTACGTTA 59.439 37.037 0.00 0.00 0.00 3.18
101 102 9.628500 ATTTTGGGATGTTAGATAGAAACCTAC 57.372 33.333 0.00 0.00 0.00 3.18
129 130 2.973694 AGGCATTTGCAACATCATCC 57.026 45.000 0.00 0.00 44.36 3.51
170 171 5.703592 ACCGTCTACATATTGTCAAAGCAAA 59.296 36.000 0.00 0.00 31.63 3.68
173 174 4.494199 GCACCGTCTACATATTGTCAAAGC 60.494 45.833 0.00 0.00 0.00 3.51
306 307 6.652900 TCGGAAAATCAGATAAACATGACACA 59.347 34.615 0.00 0.00 0.00 3.72
315 316 7.519032 ACCAAAAGTCGGAAAATCAGATAAA 57.481 32.000 0.00 0.00 0.00 1.40
329 330 2.903678 CACATGTCGAACCAAAAGTCG 58.096 47.619 0.00 0.00 0.00 4.18
341 342 1.000385 ACACCCAAAATGCACATGTCG 60.000 47.619 0.00 0.00 0.00 4.35
382 383 6.705825 GTCCCAAGCAGAATTTTAAACACAAT 59.294 34.615 0.00 0.00 0.00 2.71
418 419 6.546972 AGGAAAATCGAGAAAGAAGTGAAC 57.453 37.500 0.00 0.00 0.00 3.18
422 423 4.021368 TCCGAGGAAAATCGAGAAAGAAGT 60.021 41.667 0.00 0.00 45.56 3.01
432 433 0.373716 CCGCTTTCCGAGGAAAATCG 59.626 55.000 21.44 21.44 42.61 3.34
438 439 3.385749 GATGGCCGCTTTCCGAGGA 62.386 63.158 0.00 0.00 40.02 3.71
495 496 4.532834 TGAACAGATAATTAACCAGGCCC 58.467 43.478 0.00 0.00 0.00 5.80
498 499 7.414098 CGGAAGTTGAACAGATAATTAACCAGG 60.414 40.741 0.00 0.00 0.00 4.45
503 504 9.878667 TGTATCGGAAGTTGAACAGATAATTAA 57.121 29.630 0.00 0.00 0.00 1.40
514 515 7.327975 ACATCTAACATGTATCGGAAGTTGAA 58.672 34.615 0.00 0.00 0.00 2.69
516 517 7.401860 CAACATCTAACATGTATCGGAAGTTG 58.598 38.462 16.15 16.15 0.00 3.16
517 518 6.037172 GCAACATCTAACATGTATCGGAAGTT 59.963 38.462 0.00 2.39 0.00 2.66
562 563 3.517901 ACCCGATTCTTGGTCTCATGTAA 59.482 43.478 0.00 0.00 0.00 2.41
592 593 3.533068 TCTTCCTTCATTTCCATCCCCAT 59.467 43.478 0.00 0.00 0.00 4.00
594 595 3.669939 TCTTCCTTCATTTCCATCCCC 57.330 47.619 0.00 0.00 0.00 4.81
598 599 6.966751 TCATCTCTTCTTCCTTCATTTCCAT 58.033 36.000 0.00 0.00 0.00 3.41
601 602 6.262720 CCCATCATCTCTTCTTCCTTCATTTC 59.737 42.308 0.00 0.00 0.00 2.17
644 645 2.522836 AGTGATCGATGCATGGTCTC 57.477 50.000 2.46 5.54 0.00 3.36
661 668 0.889306 GACGAGGCCACTCAGTAAGT 59.111 55.000 5.01 0.00 44.17 2.24
665 672 1.107114 CTATGACGAGGCCACTCAGT 58.893 55.000 5.01 0.00 44.17 3.41
696 703 2.695147 TCTGTTCAACTCTCACTGCTGA 59.305 45.455 0.00 0.00 0.00 4.26
697 704 3.103447 TCTGTTCAACTCTCACTGCTG 57.897 47.619 0.00 0.00 0.00 4.41
815 823 6.395780 TTCCATACTCCAATTTAACCTCCA 57.604 37.500 0.00 0.00 0.00 3.86
848 863 6.000219 ACTGCATCTGTTCATACAAGTCTTT 59.000 36.000 0.00 0.00 32.92 2.52
849 864 5.555017 ACTGCATCTGTTCATACAAGTCTT 58.445 37.500 0.00 0.00 32.92 3.01
850 865 5.157940 ACTGCATCTGTTCATACAAGTCT 57.842 39.130 0.00 0.00 32.92 3.24
863 878 2.545526 CCCGTGCTAATTACTGCATCTG 59.454 50.000 3.05 0.00 41.45 2.90
864 879 2.170607 ACCCGTGCTAATTACTGCATCT 59.829 45.455 3.05 0.00 41.45 2.90
894 909 2.202479 GGCGGTTTTGCATCGAGC 60.202 61.111 0.00 0.00 45.96 5.03
920 936 1.274728 CTGTGAGAAGAGAGTGTGGGG 59.725 57.143 0.00 0.00 0.00 4.96
921 937 2.242926 TCTGTGAGAAGAGAGTGTGGG 58.757 52.381 0.00 0.00 0.00 4.61
983 1000 1.571919 GACGGATTCAACCAGATCGG 58.428 55.000 2.55 2.55 42.50 4.18
984 1001 1.134818 TGGACGGATTCAACCAGATCG 60.135 52.381 0.00 0.00 0.00 3.69
1220 1237 1.062488 GGCAGGTCAGGGGGATACAT 61.062 60.000 0.00 0.00 39.74 2.29
1286 1304 4.540735 ATTAAGGGGCGACGGCGG 62.541 66.667 15.06 0.00 41.24 6.13
1287 1305 2.965462 GATTAAGGGGCGACGGCG 60.965 66.667 6.12 6.12 41.24 6.46
1299 1317 1.448189 CGGGTCAACGCCGGATTAA 60.448 57.895 5.05 0.00 0.00 1.40
1301 1319 3.697747 TCGGGTCAACGCCGGATT 61.698 61.111 5.05 0.00 33.71 3.01
1302 1320 4.446413 GTCGGGTCAACGCCGGAT 62.446 66.667 5.05 0.00 39.51 4.18
1310 1328 1.228337 TCAGAGGTCGTCGGGTCAA 60.228 57.895 0.00 0.00 0.00 3.18
1316 1334 3.812019 CCGGGTCAGAGGTCGTCG 61.812 72.222 0.00 0.00 0.00 5.12
1317 1335 3.450115 CCCGGGTCAGAGGTCGTC 61.450 72.222 14.18 0.00 0.00 4.20
1331 1349 4.933064 GCGCAGATCTCGTCCCCG 62.933 72.222 0.30 3.36 0.00 5.73
1375 1394 4.041464 TCTATACCAACCAACCATGCCTA 58.959 43.478 0.00 0.00 0.00 3.93
1378 1397 5.852282 AAATCTATACCAACCAACCATGC 57.148 39.130 0.00 0.00 0.00 4.06
1452 1471 2.505819 AGCAGAACCACCTAGTATTGGG 59.494 50.000 7.10 0.00 37.18 4.12
1497 1517 2.131405 AGGCCCACTGAGATCATCG 58.869 57.895 0.00 0.00 0.00 3.84
1511 1531 0.251787 ACCAAGGATCAAACCAGGCC 60.252 55.000 0.00 0.00 32.93 5.19
1555 1576 4.774124 TCCGAGAATTCAGAAGAATGCAT 58.226 39.130 8.44 0.00 43.52 3.96
1652 1673 6.594788 ACAAAGTTCCATACATTTGCATCT 57.405 33.333 0.00 0.00 36.36 2.90
1793 1814 2.698274 TCTGTTCTTGCTGAGTACCACA 59.302 45.455 0.00 0.00 0.00 4.17
1795 1816 2.289072 GCTCTGTTCTTGCTGAGTACCA 60.289 50.000 0.00 0.00 36.97 3.25
1832 1853 8.715998 CATGAGATTAAATCTAACCCATTCTCG 58.284 37.037 0.00 0.00 40.38 4.04
1836 1857 9.927081 AGAACATGAGATTAAATCTAACCCATT 57.073 29.630 0.00 0.00 40.38 3.16
1837 1858 9.927081 AAGAACATGAGATTAAATCTAACCCAT 57.073 29.630 0.00 0.00 40.38 4.00
1839 1860 9.396022 TCAAGAACATGAGATTAAATCTAACCC 57.604 33.333 0.00 0.00 40.38 4.11
1882 1939 1.686052 GCTGTGTGGTGAATTCCCAAA 59.314 47.619 14.85 8.91 32.72 3.28
1888 1945 4.405116 ACAAAATGCTGTGTGGTGAATT 57.595 36.364 0.00 0.00 0.00 2.17
1910 1967 1.255667 GCAGAACCAGTACCGAGGGA 61.256 60.000 0.00 0.00 0.00 4.20
1914 1971 4.201523 TGGCAGAACCAGTACCGA 57.798 55.556 0.00 0.00 46.36 4.69
1930 1995 1.819632 GGAATGGGTGCCGCTAGTG 60.820 63.158 0.00 0.00 0.00 2.74
1936 2001 1.351017 ACCTATATGGAATGGGTGCCG 59.649 52.381 0.00 0.00 39.71 5.69
1943 2008 5.227569 TGCAGGTACACCTATATGGAATG 57.772 43.478 0.00 0.00 46.65 2.67
1995 2060 0.033781 GCAAAAAGCAGATGCCCACA 59.966 50.000 0.14 0.00 44.79 4.17
1996 2061 2.831597 GCAAAAAGCAGATGCCCAC 58.168 52.632 0.14 0.00 44.79 4.61
2038 2103 7.906327 TGGAGCATTAGCACTATATCATAACA 58.094 34.615 0.00 0.00 45.49 2.41
2046 2149 6.591001 TCAAACATGGAGCATTAGCACTATA 58.409 36.000 0.00 0.00 45.49 1.31
2295 2399 2.500229 ACACATACACCAGGAAAACCG 58.500 47.619 0.00 0.00 0.00 4.44
2343 2447 1.246056 GCATTCAGCTGGCCAGAACA 61.246 55.000 37.21 16.48 41.15 3.18
2521 2626 8.989980 GTAAAATAGACATTGTATAGAGGGTGC 58.010 37.037 0.00 0.00 0.00 5.01
2572 2698 2.101582 CAGTACTTCCTCCGATCCAAGG 59.898 54.545 0.00 2.21 0.00 3.61
2573 2699 2.761208 ACAGTACTTCCTCCGATCCAAG 59.239 50.000 0.00 0.00 0.00 3.61
2633 2760 5.369699 TCCGAAGATTGAGATAGGGGAAAAT 59.630 40.000 0.00 0.00 0.00 1.82
2673 2804 6.942576 CCATAACCTAGTCCTATGGAAATTGG 59.057 42.308 13.21 0.00 43.23 3.16
2862 2994 8.624776 ACAAAGGTAAAAGAATGACTTTCTCTG 58.375 33.333 4.22 0.00 46.55 3.35
2863 2995 8.624776 CACAAAGGTAAAAGAATGACTTTCTCT 58.375 33.333 4.22 0.00 46.55 3.10
2941 3076 6.019801 CACAAGAGTTACATAACGCTATGGTC 60.020 42.308 10.41 2.26 43.84 4.02
3156 3291 5.822519 CGGATATTTGAGATGAACCCAAAGA 59.177 40.000 0.00 0.00 33.91 2.52
3203 3338 5.473162 TCACATGACAGGAGGTAACATTTTG 59.527 40.000 0.00 0.00 41.41 2.44
3210 3345 3.837731 TGACATCACATGACAGGAGGTAA 59.162 43.478 0.00 0.00 31.66 2.85
3240 3375 4.357918 TCAAAGGATAGCAGGGATAAGC 57.642 45.455 0.00 0.00 0.00 3.09
3285 3423 4.039488 TCAAAGCAAATGACAGAAGGCATT 59.961 37.500 0.00 0.00 36.35 3.56
3286 3424 3.575256 TCAAAGCAAATGACAGAAGGCAT 59.425 39.130 0.00 0.00 0.00 4.40
3307 3445 0.034616 AGTCCTGCAGCTCACAAGTC 59.965 55.000 8.66 0.00 0.00 3.01
3363 3501 2.739913 TCAAATGTACAGTAAGTGCGCC 59.260 45.455 4.18 0.00 35.35 6.53
3408 3546 0.321298 ACACCGAGTTGGATTTCCGG 60.321 55.000 2.42 0.00 45.09 5.14
3409 3547 1.076332 GACACCGAGTTGGATTTCCG 58.924 55.000 2.42 0.00 42.00 4.30
3410 3548 1.271163 TGGACACCGAGTTGGATTTCC 60.271 52.381 2.42 6.13 42.00 3.13
3411 3549 2.076863 CTGGACACCGAGTTGGATTTC 58.923 52.381 2.42 0.00 42.00 2.17
3412 3550 1.271379 CCTGGACACCGAGTTGGATTT 60.271 52.381 2.42 0.00 42.00 2.17
3413 3551 0.324943 CCTGGACACCGAGTTGGATT 59.675 55.000 2.42 0.00 42.00 3.01
3414 3552 1.983224 CCTGGACACCGAGTTGGAT 59.017 57.895 2.42 0.00 42.00 3.41
3415 3553 2.879233 GCCTGGACACCGAGTTGGA 61.879 63.158 2.42 0.00 42.00 3.53
3416 3554 2.358737 GCCTGGACACCGAGTTGG 60.359 66.667 0.00 0.00 46.41 3.77
3417 3555 1.374758 GAGCCTGGACACCGAGTTG 60.375 63.158 0.00 0.00 0.00 3.16
3418 3556 1.194781 ATGAGCCTGGACACCGAGTT 61.195 55.000 0.00 0.00 0.00 3.01
3419 3557 1.608717 GATGAGCCTGGACACCGAGT 61.609 60.000 0.00 0.00 0.00 4.18
3420 3558 1.142748 GATGAGCCTGGACACCGAG 59.857 63.158 0.00 0.00 0.00 4.63
3421 3559 1.305297 AGATGAGCCTGGACACCGA 60.305 57.895 0.00 0.00 0.00 4.69
3422 3560 1.153489 CAGATGAGCCTGGACACCG 60.153 63.158 0.00 0.00 0.00 4.94
3423 3561 1.451028 GCAGATGAGCCTGGACACC 60.451 63.158 0.00 0.00 34.82 4.16
3424 3562 0.461693 GAGCAGATGAGCCTGGACAC 60.462 60.000 0.00 0.00 34.82 3.67
3425 3563 1.620739 GGAGCAGATGAGCCTGGACA 61.621 60.000 0.00 0.00 34.82 4.02
3426 3564 1.145819 GGAGCAGATGAGCCTGGAC 59.854 63.158 0.00 0.00 34.82 4.02
3427 3565 2.068821 GGGAGCAGATGAGCCTGGA 61.069 63.158 0.00 0.00 34.82 3.86
3428 3566 2.372890 TGGGAGCAGATGAGCCTGG 61.373 63.158 0.00 0.00 34.82 4.45
3429 3567 1.153208 GTGGGAGCAGATGAGCCTG 60.153 63.158 0.00 0.00 37.23 4.85
3430 3568 1.306825 AGTGGGAGCAGATGAGCCT 60.307 57.895 0.00 0.00 34.23 4.58
3431 3569 1.145819 GAGTGGGAGCAGATGAGCC 59.854 63.158 0.00 0.00 34.23 4.70
3432 3570 0.179078 CTGAGTGGGAGCAGATGAGC 60.179 60.000 0.00 0.00 34.06 4.26
3433 3571 1.482954 TCTGAGTGGGAGCAGATGAG 58.517 55.000 0.00 0.00 36.31 2.90
3434 3572 1.942776 TTCTGAGTGGGAGCAGATGA 58.057 50.000 0.00 0.00 40.51 2.92
3435 3573 2.775911 TTTCTGAGTGGGAGCAGATG 57.224 50.000 0.00 0.00 40.51 2.90
3436 3574 3.795688 TTTTTCTGAGTGGGAGCAGAT 57.204 42.857 0.00 0.00 40.51 2.90
3498 3636 9.447157 TCACACATCAAATTATCTATCACACAA 57.553 29.630 0.00 0.00 0.00 3.33
3499 3637 9.101655 CTCACACATCAAATTATCTATCACACA 57.898 33.333 0.00 0.00 0.00 3.72
3500 3638 8.554528 CCTCACACATCAAATTATCTATCACAC 58.445 37.037 0.00 0.00 0.00 3.82
3501 3639 8.267183 ACCTCACACATCAAATTATCTATCACA 58.733 33.333 0.00 0.00 0.00 3.58
3502 3640 8.668510 ACCTCACACATCAAATTATCTATCAC 57.331 34.615 0.00 0.00 0.00 3.06
3503 3641 7.933577 GGACCTCACACATCAAATTATCTATCA 59.066 37.037 0.00 0.00 0.00 2.15
3504 3642 7.116948 CGGACCTCACACATCAAATTATCTATC 59.883 40.741 0.00 0.00 0.00 2.08
3505 3643 6.931281 CGGACCTCACACATCAAATTATCTAT 59.069 38.462 0.00 0.00 0.00 1.98
3506 3644 6.127168 ACGGACCTCACACATCAAATTATCTA 60.127 38.462 0.00 0.00 0.00 1.98
3507 3645 5.118990 CGGACCTCACACATCAAATTATCT 58.881 41.667 0.00 0.00 0.00 1.98
3508 3646 4.876107 ACGGACCTCACACATCAAATTATC 59.124 41.667 0.00 0.00 0.00 1.75
3509 3647 4.843728 ACGGACCTCACACATCAAATTAT 58.156 39.130 0.00 0.00 0.00 1.28
3510 3648 4.280436 ACGGACCTCACACATCAAATTA 57.720 40.909 0.00 0.00 0.00 1.40
3511 3649 3.140325 ACGGACCTCACACATCAAATT 57.860 42.857 0.00 0.00 0.00 1.82
3512 3650 2.859165 ACGGACCTCACACATCAAAT 57.141 45.000 0.00 0.00 0.00 2.32
3513 3651 2.489971 GAACGGACCTCACACATCAAA 58.510 47.619 0.00 0.00 0.00 2.69
3514 3652 1.270625 GGAACGGACCTCACACATCAA 60.271 52.381 0.00 0.00 0.00 2.57
3515 3653 0.320374 GGAACGGACCTCACACATCA 59.680 55.000 0.00 0.00 0.00 3.07
3516 3654 0.320374 TGGAACGGACCTCACACATC 59.680 55.000 2.17 0.00 0.00 3.06
3517 3655 0.762418 TTGGAACGGACCTCACACAT 59.238 50.000 2.17 0.00 0.00 3.21
3518 3656 0.542333 TTTGGAACGGACCTCACACA 59.458 50.000 2.17 0.00 0.00 3.72
3519 3657 1.892209 ATTTGGAACGGACCTCACAC 58.108 50.000 2.17 0.00 0.00 3.82
3520 3658 2.649531 AATTTGGAACGGACCTCACA 57.350 45.000 2.17 0.00 0.00 3.58
3521 3659 3.316868 TCAAAATTTGGAACGGACCTCAC 59.683 43.478 5.83 0.00 0.00 3.51
3522 3660 3.556999 TCAAAATTTGGAACGGACCTCA 58.443 40.909 5.83 0.00 0.00 3.86
3523 3661 4.783764 ATCAAAATTTGGAACGGACCTC 57.216 40.909 5.83 0.00 0.00 3.85
3524 3662 4.586841 TGAATCAAAATTTGGAACGGACCT 59.413 37.500 5.83 0.00 0.00 3.85
3525 3663 4.877282 TGAATCAAAATTTGGAACGGACC 58.123 39.130 5.83 0.00 0.00 4.46
3526 3664 7.290118 CAAATGAATCAAAATTTGGAACGGAC 58.710 34.615 5.83 0.00 39.19 4.79
3527 3665 7.418840 CAAATGAATCAAAATTTGGAACGGA 57.581 32.000 5.83 0.00 39.19 4.69
3534 3672 9.263538 TCAGAAGTCCAAATGAATCAAAATTTG 57.736 29.630 0.00 0.00 41.41 2.32
3535 3673 9.485206 CTCAGAAGTCCAAATGAATCAAAATTT 57.515 29.630 0.00 0.00 0.00 1.82
3536 3674 7.601508 GCTCAGAAGTCCAAATGAATCAAAATT 59.398 33.333 0.00 0.00 0.00 1.82
3537 3675 7.095270 GCTCAGAAGTCCAAATGAATCAAAAT 58.905 34.615 0.00 0.00 0.00 1.82
3538 3676 6.040729 TGCTCAGAAGTCCAAATGAATCAAAA 59.959 34.615 0.00 0.00 0.00 2.44
3539 3677 5.535783 TGCTCAGAAGTCCAAATGAATCAAA 59.464 36.000 0.00 0.00 0.00 2.69
3540 3678 5.072055 TGCTCAGAAGTCCAAATGAATCAA 58.928 37.500 0.00 0.00 0.00 2.57
3541 3679 4.654915 TGCTCAGAAGTCCAAATGAATCA 58.345 39.130 0.00 0.00 0.00 2.57
3542 3680 4.438472 GCTGCTCAGAAGTCCAAATGAATC 60.438 45.833 0.29 0.00 0.00 2.52
3543 3681 3.442977 GCTGCTCAGAAGTCCAAATGAAT 59.557 43.478 0.29 0.00 0.00 2.57
3544 3682 2.816087 GCTGCTCAGAAGTCCAAATGAA 59.184 45.455 0.29 0.00 0.00 2.57
3545 3683 2.039480 AGCTGCTCAGAAGTCCAAATGA 59.961 45.455 0.00 0.00 0.00 2.57
3546 3684 2.419324 GAGCTGCTCAGAAGTCCAAATG 59.581 50.000 24.02 0.00 0.00 2.32
3547 3685 2.305343 AGAGCTGCTCAGAAGTCCAAAT 59.695 45.455 29.49 3.19 32.06 2.32
3548 3686 1.696336 AGAGCTGCTCAGAAGTCCAAA 59.304 47.619 29.49 0.00 32.06 3.28
3549 3687 1.274728 GAGAGCTGCTCAGAAGTCCAA 59.725 52.381 29.49 0.00 43.38 3.53
3550 3688 0.894141 GAGAGCTGCTCAGAAGTCCA 59.106 55.000 29.49 0.00 43.38 4.02
3551 3689 0.179140 CGAGAGCTGCTCAGAAGTCC 60.179 60.000 29.49 9.58 44.15 3.85
3552 3690 0.179140 CCGAGAGCTGCTCAGAAGTC 60.179 60.000 29.49 17.18 44.15 3.01
3553 3691 1.889454 CCGAGAGCTGCTCAGAAGT 59.111 57.895 29.49 10.20 44.15 3.01
3554 3692 1.519013 GCCGAGAGCTGCTCAGAAG 60.519 63.158 29.49 16.41 44.15 2.85
3555 3693 1.820010 TTGCCGAGAGCTGCTCAGAA 61.820 55.000 29.49 11.25 44.15 3.02
3556 3694 1.820010 TTTGCCGAGAGCTGCTCAGA 61.820 55.000 29.49 7.15 44.15 3.27
3557 3695 0.952497 TTTTGCCGAGAGCTGCTCAG 60.952 55.000 29.49 21.79 44.15 3.35
3558 3696 0.534877 TTTTTGCCGAGAGCTGCTCA 60.535 50.000 29.49 8.15 44.15 4.26
3559 3697 2.247790 TTTTTGCCGAGAGCTGCTC 58.752 52.632 21.72 21.72 44.23 4.26
3560 3698 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
3574 3712 6.070824 ACTGTTCTGACCCAATTTGTCTTTTT 60.071 34.615 6.47 0.00 33.83 1.94
3575 3713 5.422012 ACTGTTCTGACCCAATTTGTCTTTT 59.578 36.000 6.47 0.00 33.83 2.27
3576 3714 4.956075 ACTGTTCTGACCCAATTTGTCTTT 59.044 37.500 6.47 0.00 33.83 2.52
3577 3715 4.339247 CACTGTTCTGACCCAATTTGTCTT 59.661 41.667 6.47 0.00 33.83 3.01
3578 3716 3.885297 CACTGTTCTGACCCAATTTGTCT 59.115 43.478 6.47 0.00 33.83 3.41
3579 3717 3.550842 GCACTGTTCTGACCCAATTTGTC 60.551 47.826 0.00 0.00 0.00 3.18
3580 3718 2.362077 GCACTGTTCTGACCCAATTTGT 59.638 45.455 0.00 0.00 0.00 2.83
3581 3719 2.605338 CGCACTGTTCTGACCCAATTTG 60.605 50.000 0.00 0.00 0.00 2.32
3582 3720 1.608590 CGCACTGTTCTGACCCAATTT 59.391 47.619 0.00 0.00 0.00 1.82
3583 3721 1.238439 CGCACTGTTCTGACCCAATT 58.762 50.000 0.00 0.00 0.00 2.32
3584 3722 0.108585 ACGCACTGTTCTGACCCAAT 59.891 50.000 0.00 0.00 0.00 3.16
3585 3723 0.813610 CACGCACTGTTCTGACCCAA 60.814 55.000 0.00 0.00 0.00 4.12
3586 3724 1.227527 CACGCACTGTTCTGACCCA 60.228 57.895 0.00 0.00 0.00 4.51
3587 3725 0.531974 TTCACGCACTGTTCTGACCC 60.532 55.000 0.00 0.00 0.00 4.46
3588 3726 1.512926 ATTCACGCACTGTTCTGACC 58.487 50.000 0.00 0.00 0.00 4.02
3589 3727 3.318017 ACTATTCACGCACTGTTCTGAC 58.682 45.455 0.00 0.00 0.00 3.51
3590 3728 3.660501 ACTATTCACGCACTGTTCTGA 57.339 42.857 0.00 0.00 0.00 3.27
3591 3729 5.405571 AGTTTACTATTCACGCACTGTTCTG 59.594 40.000 0.00 0.00 0.00 3.02
3592 3730 5.405571 CAGTTTACTATTCACGCACTGTTCT 59.594 40.000 0.00 0.00 0.00 3.01
3593 3731 5.176958 ACAGTTTACTATTCACGCACTGTTC 59.823 40.000 0.00 0.00 40.30 3.18
3594 3732 5.054477 ACAGTTTACTATTCACGCACTGTT 58.946 37.500 0.00 0.00 40.30 3.16
3595 3733 4.628074 ACAGTTTACTATTCACGCACTGT 58.372 39.130 0.00 0.00 38.80 3.55
3596 3734 5.591643 AACAGTTTACTATTCACGCACTG 57.408 39.130 0.00 0.00 36.93 3.66
3597 3735 6.613755 AAAACAGTTTACTATTCACGCACT 57.386 33.333 0.00 0.00 0.00 4.40
3598 3736 9.685005 CTATAAAACAGTTTACTATTCACGCAC 57.315 33.333 0.00 0.00 32.04 5.34
3599 3737 9.642327 TCTATAAAACAGTTTACTATTCACGCA 57.358 29.630 0.00 0.00 32.04 5.24
3600 3738 9.897349 GTCTATAAAACAGTTTACTATTCACGC 57.103 33.333 0.00 0.00 32.04 5.34
3611 3749 9.143155 ACAAATTCAGGGTCTATAAAACAGTTT 57.857 29.630 0.00 0.00 0.00 2.66
3612 3750 8.706322 ACAAATTCAGGGTCTATAAAACAGTT 57.294 30.769 0.00 0.00 0.00 3.16
3613 3751 8.164070 AGACAAATTCAGGGTCTATAAAACAGT 58.836 33.333 0.00 0.00 39.95 3.55
3614 3752 8.567285 AGACAAATTCAGGGTCTATAAAACAG 57.433 34.615 0.00 0.00 39.95 3.16
3615 3753 8.934023 AAGACAAATTCAGGGTCTATAAAACA 57.066 30.769 0.00 0.00 40.80 2.83
3640 3778 5.536161 ACATCTAAGAAGCTCTTGGCAAAAA 59.464 36.000 0.00 0.00 44.79 1.94
3641 3779 5.072741 ACATCTAAGAAGCTCTTGGCAAAA 58.927 37.500 0.00 0.00 44.79 2.44
3642 3780 4.655963 ACATCTAAGAAGCTCTTGGCAAA 58.344 39.130 0.00 0.00 44.79 3.68
3643 3781 4.292186 ACATCTAAGAAGCTCTTGGCAA 57.708 40.909 0.00 0.00 44.79 4.52
3644 3782 3.988976 ACATCTAAGAAGCTCTTGGCA 57.011 42.857 8.21 0.00 44.79 4.92
3645 3783 4.759782 TGTACATCTAAGAAGCTCTTGGC 58.240 43.478 0.00 0.00 37.29 4.52
3646 3784 7.550551 TCATTTGTACATCTAAGAAGCTCTTGG 59.449 37.037 0.00 6.00 37.29 3.61
3647 3785 8.484641 TCATTTGTACATCTAAGAAGCTCTTG 57.515 34.615 0.00 0.00 37.29 3.02
3648 3786 8.317679 ACTCATTTGTACATCTAAGAAGCTCTT 58.682 33.333 0.00 0.00 40.35 2.85
3649 3787 7.846066 ACTCATTTGTACATCTAAGAAGCTCT 58.154 34.615 0.00 0.00 0.00 4.09
3650 3788 8.386606 CAACTCATTTGTACATCTAAGAAGCTC 58.613 37.037 0.00 0.00 0.00 4.09
3651 3789 8.097038 TCAACTCATTTGTACATCTAAGAAGCT 58.903 33.333 0.00 0.00 36.49 3.74
3652 3790 8.256611 TCAACTCATTTGTACATCTAAGAAGC 57.743 34.615 0.00 0.00 36.49 3.86
3659 3797 8.859090 TCCAAATTTCAACTCATTTGTACATCT 58.141 29.630 0.00 0.00 38.29 2.90
3660 3798 9.132521 CTCCAAATTTCAACTCATTTGTACATC 57.867 33.333 0.00 0.00 38.29 3.06
3661 3799 7.599998 GCTCCAAATTTCAACTCATTTGTACAT 59.400 33.333 0.00 0.00 38.29 2.29
3662 3800 6.922957 GCTCCAAATTTCAACTCATTTGTACA 59.077 34.615 0.00 0.00 38.29 2.90
3663 3801 6.088085 CGCTCCAAATTTCAACTCATTTGTAC 59.912 38.462 0.00 0.00 38.29 2.90
3664 3802 6.148948 CGCTCCAAATTTCAACTCATTTGTA 58.851 36.000 0.00 0.00 38.29 2.41
3665 3803 4.984161 CGCTCCAAATTTCAACTCATTTGT 59.016 37.500 0.00 0.00 38.29 2.83
3666 3804 4.386652 CCGCTCCAAATTTCAACTCATTTG 59.613 41.667 0.00 0.00 39.25 2.32
3667 3805 4.280677 TCCGCTCCAAATTTCAACTCATTT 59.719 37.500 0.00 0.00 0.00 2.32
3668 3806 3.826157 TCCGCTCCAAATTTCAACTCATT 59.174 39.130 0.00 0.00 0.00 2.57
3669 3807 3.191371 GTCCGCTCCAAATTTCAACTCAT 59.809 43.478 0.00 0.00 0.00 2.90
3670 3808 2.552315 GTCCGCTCCAAATTTCAACTCA 59.448 45.455 0.00 0.00 0.00 3.41
3671 3809 2.095212 GGTCCGCTCCAAATTTCAACTC 60.095 50.000 0.00 0.00 0.00 3.01
3672 3810 1.886542 GGTCCGCTCCAAATTTCAACT 59.113 47.619 0.00 0.00 0.00 3.16
3673 3811 1.886542 AGGTCCGCTCCAAATTTCAAC 59.113 47.619 0.00 0.00 0.00 3.18
3674 3812 2.159382 GAGGTCCGCTCCAAATTTCAA 58.841 47.619 0.00 0.00 0.00 2.69
3675 3813 1.073125 TGAGGTCCGCTCCAAATTTCA 59.927 47.619 0.00 0.00 0.00 2.69
3676 3814 1.468914 GTGAGGTCCGCTCCAAATTTC 59.531 52.381 0.00 0.00 0.00 2.17
3677 3815 1.534729 GTGAGGTCCGCTCCAAATTT 58.465 50.000 0.00 0.00 0.00 1.82
3678 3816 0.673644 CGTGAGGTCCGCTCCAAATT 60.674 55.000 0.00 0.00 0.00 1.82
3679 3817 1.079127 CGTGAGGTCCGCTCCAAAT 60.079 57.895 0.00 0.00 0.00 2.32
3680 3818 2.342279 CGTGAGGTCCGCTCCAAA 59.658 61.111 0.00 0.00 0.00 3.28
3687 3825 0.652592 GATTTGATGCGTGAGGTCCG 59.347 55.000 0.00 0.00 0.00 4.79
3688 3826 1.737838 TGATTTGATGCGTGAGGTCC 58.262 50.000 0.00 0.00 0.00 4.46
3689 3827 3.201290 AGATGATTTGATGCGTGAGGTC 58.799 45.455 0.00 0.00 0.00 3.85
3690 3828 3.272574 AGATGATTTGATGCGTGAGGT 57.727 42.857 0.00 0.00 0.00 3.85
3691 3829 4.992951 TGATAGATGATTTGATGCGTGAGG 59.007 41.667 0.00 0.00 0.00 3.86
3692 3830 5.464389 TGTGATAGATGATTTGATGCGTGAG 59.536 40.000 0.00 0.00 0.00 3.51
3693 3831 5.358922 TGTGATAGATGATTTGATGCGTGA 58.641 37.500 0.00 0.00 0.00 4.35
3694 3832 5.662211 TGTGATAGATGATTTGATGCGTG 57.338 39.130 0.00 0.00 0.00 5.34
3695 3833 6.682423 TTTGTGATAGATGATTTGATGCGT 57.318 33.333 0.00 0.00 0.00 5.24
3696 3834 7.974243 TTTTTGTGATAGATGATTTGATGCG 57.026 32.000 0.00 0.00 0.00 4.73
3762 3900 1.357334 GCACCCGCGTTCAGAAAAA 59.643 52.632 4.92 0.00 0.00 1.94
3763 3901 1.781025 CTGCACCCGCGTTCAGAAAA 61.781 55.000 4.92 0.00 42.97 2.29
3764 3902 2.203084 TGCACCCGCGTTCAGAAA 60.203 55.556 4.92 0.00 42.97 2.52
3765 3903 2.449031 ATCTGCACCCGCGTTCAGAA 62.449 55.000 16.61 5.42 43.95 3.02
3766 3904 2.942796 ATCTGCACCCGCGTTCAGA 61.943 57.895 15.53 15.53 44.68 3.27
3767 3905 2.434884 ATCTGCACCCGCGTTCAG 60.435 61.111 4.92 6.59 42.97 3.02
3768 3906 2.741985 CATCTGCACCCGCGTTCA 60.742 61.111 4.92 0.00 42.97 3.18
3769 3907 2.434185 TCATCTGCACCCGCGTTC 60.434 61.111 4.92 0.00 42.97 3.95
3770 3908 2.434884 CTCATCTGCACCCGCGTT 60.435 61.111 4.92 0.00 42.97 4.84
3773 3911 3.200593 CTGCTCATCTGCACCCGC 61.201 66.667 0.00 0.00 38.12 6.13
3774 3912 1.521010 CTCTGCTCATCTGCACCCG 60.521 63.158 0.00 0.00 38.12 5.28
3775 3913 1.818785 GCTCTGCTCATCTGCACCC 60.819 63.158 0.00 0.00 38.12 4.61
3776 3914 1.078637 TGCTCTGCTCATCTGCACC 60.079 57.895 0.00 0.00 38.12 5.01
3777 3915 0.108281 TCTGCTCTGCTCATCTGCAC 60.108 55.000 0.00 0.00 38.12 4.57
3778 3916 0.611714 TTCTGCTCTGCTCATCTGCA 59.388 50.000 0.00 0.00 41.05 4.41
3779 3917 1.397692 GTTTCTGCTCTGCTCATCTGC 59.602 52.381 0.00 0.00 0.00 4.26
3780 3918 2.008329 GGTTTCTGCTCTGCTCATCTG 58.992 52.381 0.00 0.00 0.00 2.90
3781 3919 1.065564 GGGTTTCTGCTCTGCTCATCT 60.066 52.381 0.00 0.00 0.00 2.90
3782 3920 1.065564 AGGGTTTCTGCTCTGCTCATC 60.066 52.381 0.00 0.00 0.00 2.92
3783 3921 0.990374 AGGGTTTCTGCTCTGCTCAT 59.010 50.000 0.00 0.00 0.00 2.90
3784 3922 0.035881 CAGGGTTTCTGCTCTGCTCA 59.964 55.000 0.00 0.00 36.60 4.26
3785 3923 2.851798 CAGGGTTTCTGCTCTGCTC 58.148 57.895 0.00 0.00 36.60 4.26
3792 3930 5.877842 CCAAATAGGACACAGGGTTTCTGC 61.878 50.000 0.00 0.00 43.29 4.26
3793 3931 3.758554 CCAAATAGGACACAGGGTTTCTG 59.241 47.826 0.00 0.00 44.38 3.02
3794 3932 3.655777 TCCAAATAGGACACAGGGTTTCT 59.344 43.478 0.00 0.00 43.07 2.52
3795 3933 4.028993 TCCAAATAGGACACAGGGTTTC 57.971 45.455 0.00 0.00 43.07 2.78
3823 3961 3.511934 ACTGGTTACCTGTTGCACAAAAA 59.488 39.130 8.14 0.00 31.67 1.94
3824 3962 3.093057 ACTGGTTACCTGTTGCACAAAA 58.907 40.909 8.14 0.00 31.67 2.44
3825 3963 2.425312 CACTGGTTACCTGTTGCACAAA 59.575 45.455 11.27 0.00 33.44 2.83
3826 3964 2.020720 CACTGGTTACCTGTTGCACAA 58.979 47.619 11.27 0.00 33.44 3.33
3827 3965 1.674359 CACTGGTTACCTGTTGCACA 58.326 50.000 11.27 0.00 33.44 4.57
3828 3966 0.310854 GCACTGGTTACCTGTTGCAC 59.689 55.000 21.02 7.46 33.44 4.57
3829 3967 0.182537 AGCACTGGTTACCTGTTGCA 59.817 50.000 24.63 0.00 33.44 4.08
3830 3968 1.001378 CAAGCACTGGTTACCTGTTGC 60.001 52.381 19.52 19.52 33.44 4.17
3831 3969 2.549754 CTCAAGCACTGGTTACCTGTTG 59.450 50.000 11.27 8.02 33.44 3.33
3832 3970 2.487265 CCTCAAGCACTGGTTACCTGTT 60.487 50.000 11.27 0.00 33.44 3.16
3833 3971 1.072331 CCTCAAGCACTGGTTACCTGT 59.928 52.381 8.14 8.14 36.11 4.00
3834 3972 1.813513 CCTCAAGCACTGGTTACCTG 58.186 55.000 6.74 6.74 0.00 4.00
3835 3973 0.036875 GCCTCAAGCACTGGTTACCT 59.963 55.000 2.07 0.00 42.97 3.08
3836 3974 2.556286 GCCTCAAGCACTGGTTACC 58.444 57.895 0.00 0.00 42.97 2.85
3846 3984 2.086869 ACACACACATATGCCTCAAGC 58.913 47.619 1.58 0.00 44.14 4.01
3847 3985 5.878332 TTAACACACACATATGCCTCAAG 57.122 39.130 1.58 0.00 0.00 3.02
3848 3986 6.000840 TCTTTAACACACACATATGCCTCAA 58.999 36.000 1.58 0.00 0.00 3.02
3849 3987 5.555966 TCTTTAACACACACATATGCCTCA 58.444 37.500 1.58 0.00 0.00 3.86
3850 3988 6.494893 TTCTTTAACACACACATATGCCTC 57.505 37.500 1.58 0.00 0.00 4.70
3851 3989 6.490040 ACTTTCTTTAACACACACATATGCCT 59.510 34.615 1.58 0.00 0.00 4.75
3852 3990 6.582295 CACTTTCTTTAACACACACATATGCC 59.418 38.462 1.58 0.00 0.00 4.40
3853 3991 7.113404 CACACTTTCTTTAACACACACATATGC 59.887 37.037 1.58 0.00 0.00 3.14
3854 3992 8.341903 TCACACTTTCTTTAACACACACATATG 58.658 33.333 0.00 0.00 0.00 1.78
3855 3993 8.445275 TCACACTTTCTTTAACACACACATAT 57.555 30.769 0.00 0.00 0.00 1.78
3856 3994 7.011950 CCTCACACTTTCTTTAACACACACATA 59.988 37.037 0.00 0.00 0.00 2.29
3857 3995 6.183360 CCTCACACTTTCTTTAACACACACAT 60.183 38.462 0.00 0.00 0.00 3.21
3858 3996 5.123186 CCTCACACTTTCTTTAACACACACA 59.877 40.000 0.00 0.00 0.00 3.72
3859 3997 5.569413 CCTCACACTTTCTTTAACACACAC 58.431 41.667 0.00 0.00 0.00 3.82
3860 3998 4.095782 GCCTCACACTTTCTTTAACACACA 59.904 41.667 0.00 0.00 0.00 3.72
3861 3999 4.095782 TGCCTCACACTTTCTTTAACACAC 59.904 41.667 0.00 0.00 0.00 3.82
3862 4000 4.265893 TGCCTCACACTTTCTTTAACACA 58.734 39.130 0.00 0.00 0.00 3.72
3863 4001 4.893424 TGCCTCACACTTTCTTTAACAC 57.107 40.909 0.00 0.00 0.00 3.32
3864 4002 5.906113 TTTGCCTCACACTTTCTTTAACA 57.094 34.783 0.00 0.00 0.00 2.41
3865 4003 7.277760 ACATTTTTGCCTCACACTTTCTTTAAC 59.722 33.333 0.00 0.00 0.00 2.01
3866 4004 7.277539 CACATTTTTGCCTCACACTTTCTTTAA 59.722 33.333 0.00 0.00 0.00 1.52
3867 4005 6.756074 CACATTTTTGCCTCACACTTTCTTTA 59.244 34.615 0.00 0.00 0.00 1.85
3868 4006 5.581874 CACATTTTTGCCTCACACTTTCTTT 59.418 36.000 0.00 0.00 0.00 2.52
3869 4007 5.111293 CACATTTTTGCCTCACACTTTCTT 58.889 37.500 0.00 0.00 0.00 2.52
3870 4008 4.160252 ACACATTTTTGCCTCACACTTTCT 59.840 37.500 0.00 0.00 0.00 2.52
3871 4009 4.268405 CACACATTTTTGCCTCACACTTTC 59.732 41.667 0.00 0.00 0.00 2.62
3872 4010 4.183101 CACACATTTTTGCCTCACACTTT 58.817 39.130 0.00 0.00 0.00 2.66
3873 4011 3.195396 ACACACATTTTTGCCTCACACTT 59.805 39.130 0.00 0.00 0.00 3.16
3874 4012 2.760092 ACACACATTTTTGCCTCACACT 59.240 40.909 0.00 0.00 0.00 3.55
3875 4013 3.163630 ACACACATTTTTGCCTCACAC 57.836 42.857 0.00 0.00 0.00 3.82
3876 4014 3.883830 AACACACATTTTTGCCTCACA 57.116 38.095 0.00 0.00 0.00 3.58
3877 4015 5.276161 CGTTTAACACACATTTTTGCCTCAC 60.276 40.000 0.00 0.00 0.00 3.51
3878 4016 4.800993 CGTTTAACACACATTTTTGCCTCA 59.199 37.500 0.00 0.00 0.00 3.86
3879 4017 5.038033 TCGTTTAACACACATTTTTGCCTC 58.962 37.500 0.00 0.00 0.00 4.70
3880 4018 5.000012 TCGTTTAACACACATTTTTGCCT 58.000 34.783 0.00 0.00 0.00 4.75
3881 4019 5.704217 TTCGTTTAACACACATTTTTGCC 57.296 34.783 0.00 0.00 0.00 4.52
3882 4020 7.010023 TGTTTTCGTTTAACACACATTTTTGC 58.990 30.769 0.00 0.00 30.96 3.68
3883 4021 8.919695 TTGTTTTCGTTTAACACACATTTTTG 57.080 26.923 0.00 0.00 35.39 2.44
3884 4022 8.979574 TCTTGTTTTCGTTTAACACACATTTTT 58.020 25.926 0.00 0.00 35.39 1.94
3885 4023 8.522178 TCTTGTTTTCGTTTAACACACATTTT 57.478 26.923 0.00 0.00 35.39 1.82
3886 4024 8.522178 TTCTTGTTTTCGTTTAACACACATTT 57.478 26.923 0.00 0.00 35.39 2.32
3887 4025 8.522178 TTTCTTGTTTTCGTTTAACACACATT 57.478 26.923 0.00 0.00 35.39 2.71
3888 4026 8.429299 GTTTTCTTGTTTTCGTTTAACACACAT 58.571 29.630 0.00 0.00 35.39 3.21
3889 4027 7.357368 CGTTTTCTTGTTTTCGTTTAACACACA 60.357 33.333 0.00 0.00 35.39 3.72
3890 4028 6.938436 CGTTTTCTTGTTTTCGTTTAACACAC 59.062 34.615 0.00 0.00 35.39 3.82
3891 4029 6.636044 ACGTTTTCTTGTTTTCGTTTAACACA 59.364 30.769 0.00 0.00 35.39 3.72
3892 4030 7.025452 ACGTTTTCTTGTTTTCGTTTAACAC 57.975 32.000 0.00 0.00 35.39 3.32
3893 4031 7.620397 AACGTTTTCTTGTTTTCGTTTAACA 57.380 28.000 0.00 0.00 38.09 2.41
3894 4032 8.625726 TGTAACGTTTTCTTGTTTTCGTTTAAC 58.374 29.630 5.91 0.00 40.82 2.01
3895 4033 8.719478 TGTAACGTTTTCTTGTTTTCGTTTAA 57.281 26.923 5.91 0.00 40.82 1.52
3896 4034 8.719478 TTGTAACGTTTTCTTGTTTTCGTTTA 57.281 26.923 5.91 0.00 40.82 2.01
3897 4035 7.148934 CCTTGTAACGTTTTCTTGTTTTCGTTT 60.149 33.333 5.91 0.00 40.82 3.60
3898 4036 6.306117 CCTTGTAACGTTTTCTTGTTTTCGTT 59.694 34.615 5.91 0.00 42.51 3.85
3899 4037 5.796437 CCTTGTAACGTTTTCTTGTTTTCGT 59.204 36.000 5.91 0.00 0.00 3.85
3900 4038 5.796437 ACCTTGTAACGTTTTCTTGTTTTCG 59.204 36.000 5.91 0.00 0.00 3.46
3901 4039 7.571089 AACCTTGTAACGTTTTCTTGTTTTC 57.429 32.000 5.91 0.00 0.00 2.29
3902 4040 7.949903 AAACCTTGTAACGTTTTCTTGTTTT 57.050 28.000 5.91 0.00 0.00 2.43
3903 4041 7.949903 AAAACCTTGTAACGTTTTCTTGTTT 57.050 28.000 5.91 8.88 37.58 2.83
3904 4042 7.949903 AAAAACCTTGTAACGTTTTCTTGTT 57.050 28.000 5.91 2.75 40.39 2.83
3925 4063 6.553100 TGAAAATAAGAGAAGGCTCCCAAAAA 59.447 34.615 0.00 0.00 42.30 1.94
3926 4064 6.074648 TGAAAATAAGAGAAGGCTCCCAAAA 58.925 36.000 0.00 0.00 42.30 2.44
3927 4065 5.640147 TGAAAATAAGAGAAGGCTCCCAAA 58.360 37.500 0.00 0.00 42.30 3.28
3928 4066 5.255397 TGAAAATAAGAGAAGGCTCCCAA 57.745 39.130 0.00 0.00 42.30 4.12
3929 4067 4.927267 TGAAAATAAGAGAAGGCTCCCA 57.073 40.909 0.00 0.00 42.30 4.37
3930 4068 6.782082 ATTTGAAAATAAGAGAAGGCTCCC 57.218 37.500 0.00 0.00 42.30 4.30
3931 4069 6.969473 CGAATTTGAAAATAAGAGAAGGCTCC 59.031 38.462 0.00 0.00 42.30 4.70
3932 4070 6.470556 GCGAATTTGAAAATAAGAGAAGGCTC 59.529 38.462 0.00 0.00 41.62 4.70
3933 4071 6.151817 AGCGAATTTGAAAATAAGAGAAGGCT 59.848 34.615 0.00 0.00 0.00 4.58
3934 4072 6.325596 AGCGAATTTGAAAATAAGAGAAGGC 58.674 36.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.