Multiple sequence alignment - TraesCS5D01G371800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G371800 chr5D 100.000 3160 0 0 1 3160 445883867 445887026 0.000000e+00 5836.0
1 TraesCS5D01G371800 chr5D 91.277 470 37 4 477 943 23170813 23170345 3.440000e-179 638.0
2 TraesCS5D01G371800 chr7B 92.087 1150 65 11 1809 2949 678568179 678567047 0.000000e+00 1596.0
3 TraesCS5D01G371800 chr7B 92.936 637 36 1 1181 1817 678568981 678568354 0.000000e+00 918.0
4 TraesCS5D01G371800 chr7B 81.322 605 86 15 1342 1940 678342272 678341689 1.720000e-127 466.0
5 TraesCS5D01G371800 chr7B 90.456 241 15 7 952 1189 678570836 678570601 8.510000e-81 311.0
6 TraesCS5D01G371800 chr7B 81.283 374 38 14 993 1347 678342916 678342556 1.120000e-69 274.0
7 TraesCS5D01G371800 chr7B 93.855 179 9 2 2982 3160 678567052 678566876 5.200000e-68 268.0
8 TraesCS5D01G371800 chr7B 88.889 171 10 3 1 163 678571388 678571219 5.340000e-48 202.0
9 TraesCS5D01G371800 chr7B 93.548 93 6 0 177 269 678571133 678571041 4.250000e-29 139.0
10 TraesCS5D01G371800 chr7B 96.364 55 2 0 2827 2881 678567123 678567069 1.210000e-14 91.6
11 TraesCS5D01G371800 chr7B 97.222 36 1 0 1 36 611497193 611497228 9.460000e-06 62.1
12 TraesCS5D01G371800 chr7A 89.331 1181 95 15 960 2128 691290362 691289201 0.000000e+00 1454.0
13 TraesCS5D01G371800 chr7A 82.915 796 114 14 1341 2125 691275607 691274823 0.000000e+00 697.0
14 TraesCS5D01G371800 chr7A 82.031 384 35 19 981 1347 691276062 691275696 2.380000e-76 296.0
15 TraesCS5D01G371800 chr7A 94.340 159 3 4 1 159 55544706 55544554 4.070000e-59 239.0
16 TraesCS5D01G371800 chr7A 84.291 261 23 9 216 476 691290603 691290361 4.070000e-59 239.0
17 TraesCS5D01G371800 chr7A 92.025 163 9 3 1 163 112527766 112527608 3.170000e-55 226.0
18 TraesCS5D01G371800 chr7D 95.372 497 4 2 3 481 599075270 599074775 0.000000e+00 773.0
19 TraesCS5D01G371800 chr7D 94.635 466 22 3 482 944 580654163 580653698 0.000000e+00 719.0
20 TraesCS5D01G371800 chr7D 99.235 392 3 0 944 1335 599074784 599074393 0.000000e+00 708.0
21 TraesCS5D01G371800 chr7D 84.635 397 53 4 1732 2120 598727539 598727143 3.820000e-104 388.0
22 TraesCS5D01G371800 chr7D 84.286 350 53 2 1341 1689 598728477 598728129 1.090000e-89 340.0
23 TraesCS5D01G371800 chr7D 81.818 385 35 20 981 1347 598728930 598728563 1.110000e-74 291.0
24 TraesCS5D01G371800 chr6D 95.259 464 18 3 486 945 428196021 428196484 0.000000e+00 732.0
25 TraesCS5D01G371800 chr3D 95.064 466 20 3 482 944 549765722 549766187 0.000000e+00 730.0
26 TraesCS5D01G371800 chr4D 95.054 465 19 4 482 944 143563829 143564291 0.000000e+00 728.0
27 TraesCS5D01G371800 chr2D 94.421 466 23 3 482 944 169595003 169594538 0.000000e+00 713.0
28 TraesCS5D01G371800 chrUn 94.231 468 21 5 482 943 132012637 132013104 0.000000e+00 710.0
29 TraesCS5D01G371800 chr1B 93.750 464 26 3 482 943 527993492 527993954 0.000000e+00 693.0
30 TraesCS5D01G371800 chr1B 90.184 163 16 0 2521 2683 389596384 389596546 2.470000e-51 213.0
31 TraesCS5D01G371800 chr1B 88.889 162 18 0 2521 2682 201758556 201758395 1.920000e-47 200.0
32 TraesCS5D01G371800 chr4A 93.191 470 24 6 482 948 724120806 724121270 0.000000e+00 684.0
33 TraesCS5D01G371800 chr4A 90.123 162 16 0 2521 2682 669198137 669197976 8.880000e-51 211.0
34 TraesCS5D01G371800 chr1A 89.634 164 17 0 2519 2682 131283457 131283620 3.190000e-50 209.0
35 TraesCS5D01G371800 chr2B 89.506 162 17 0 2521 2682 756672030 756671869 4.130000e-49 206.0
36 TraesCS5D01G371800 chr3B 88.623 167 17 2 2517 2682 776193996 776194161 5.340000e-48 202.0
37 TraesCS5D01G371800 chr5B 86.592 179 23 1 2517 2695 479326961 479327138 2.490000e-46 196.0
38 TraesCS5D01G371800 chr5B 86.782 174 22 1 2519 2691 478474571 478474744 3.220000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G371800 chr5D 445883867 445887026 3159 False 5836.000000 5836 100.000000 1 3160 1 chr5D.!!$F1 3159
1 TraesCS5D01G371800 chr7B 678566876 678571388 4512 True 503.657143 1596 92.590714 1 3160 7 chr7B.!!$R2 3159
2 TraesCS5D01G371800 chr7B 678341689 678342916 1227 True 370.000000 466 81.302500 993 1940 2 chr7B.!!$R1 947
3 TraesCS5D01G371800 chr7A 691289201 691290603 1402 True 846.500000 1454 86.811000 216 2128 2 chr7A.!!$R4 1912
4 TraesCS5D01G371800 chr7A 691274823 691276062 1239 True 496.500000 697 82.473000 981 2125 2 chr7A.!!$R3 1144
5 TraesCS5D01G371800 chr7D 599074393 599075270 877 True 740.500000 773 97.303500 3 1335 2 chr7D.!!$R3 1332
6 TraesCS5D01G371800 chr7D 598727143 598728930 1787 True 339.666667 388 83.579667 981 2120 3 chr7D.!!$R2 1139

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 343 0.516877 CGAAGGAAGTTGATGCGCAA 59.483 50.0 17.11 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 4995 0.104487 ATGGCTCTCATCTGCAGACG 59.896 55.0 20.97 11.99 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 7.826690 TCACTAAAGAAAAGTCATATTTGCCC 58.173 34.615 0.00 0.00 0.00 5.36
262 343 0.516877 CGAAGGAAGTTGATGCGCAA 59.483 50.000 17.11 0.00 0.00 4.85
304 403 2.320805 AGACGAATTCGAACGAACGA 57.679 45.000 33.05 0.00 43.02 3.85
472 575 3.734231 GCAGTATAAAGCGCGAGTAATCA 59.266 43.478 12.10 0.00 0.00 2.57
473 576 4.208460 GCAGTATAAAGCGCGAGTAATCAA 59.792 41.667 12.10 0.00 0.00 2.57
474 577 5.276678 GCAGTATAAAGCGCGAGTAATCAAA 60.277 40.000 12.10 0.00 0.00 2.69
475 578 6.120812 CAGTATAAAGCGCGAGTAATCAAAC 58.879 40.000 12.10 0.00 0.00 2.93
476 579 5.808540 AGTATAAAGCGCGAGTAATCAAACA 59.191 36.000 12.10 0.00 0.00 2.83
477 580 3.889196 AAAGCGCGAGTAATCAAACAA 57.111 38.095 12.10 0.00 0.00 2.83
478 581 4.419522 AAAGCGCGAGTAATCAAACAAT 57.580 36.364 12.10 0.00 0.00 2.71
479 582 5.539582 AAAGCGCGAGTAATCAAACAATA 57.460 34.783 12.10 0.00 0.00 1.90
480 583 5.539582 AAGCGCGAGTAATCAAACAATAA 57.460 34.783 12.10 0.00 0.00 1.40
481 584 5.143916 AGCGCGAGTAATCAAACAATAAG 57.856 39.130 12.10 0.00 0.00 1.73
482 585 4.034048 AGCGCGAGTAATCAAACAATAAGG 59.966 41.667 12.10 0.00 0.00 2.69
483 586 4.201783 GCGCGAGTAATCAAACAATAAGGT 60.202 41.667 12.10 0.00 0.00 3.50
484 587 5.672819 GCGCGAGTAATCAAACAATAAGGTT 60.673 40.000 12.10 0.00 0.00 3.50
485 588 6.455913 GCGCGAGTAATCAAACAATAAGGTTA 60.456 38.462 12.10 0.00 0.00 2.85
486 589 7.457868 CGCGAGTAATCAAACAATAAGGTTAA 58.542 34.615 0.00 0.00 0.00 2.01
487 590 7.424452 CGCGAGTAATCAAACAATAAGGTTAAC 59.576 37.037 0.00 0.00 0.00 2.01
488 591 8.231837 GCGAGTAATCAAACAATAAGGTTAACA 58.768 33.333 8.10 0.00 0.00 2.41
499 602 9.476202 AACAATAAGGTTAACATTTGAGAAAGC 57.524 29.630 11.18 0.00 0.00 3.51
500 603 8.637986 ACAATAAGGTTAACATTTGAGAAAGCA 58.362 29.630 11.18 0.00 0.00 3.91
501 604 9.643693 CAATAAGGTTAACATTTGAGAAAGCAT 57.356 29.630 11.18 0.00 0.00 3.79
504 607 7.396540 AGGTTAACATTTGAGAAAGCATAGG 57.603 36.000 8.10 0.00 0.00 2.57
505 608 6.036470 GGTTAACATTTGAGAAAGCATAGGC 58.964 40.000 8.10 0.00 41.61 3.93
518 621 2.298610 GCATAGGCTTTTCTACACCCC 58.701 52.381 0.00 0.00 36.96 4.95
519 622 2.092375 GCATAGGCTTTTCTACACCCCT 60.092 50.000 0.00 0.00 36.96 4.79
520 623 3.624959 GCATAGGCTTTTCTACACCCCTT 60.625 47.826 0.00 0.00 36.96 3.95
521 624 4.384868 GCATAGGCTTTTCTACACCCCTTA 60.385 45.833 0.00 0.00 36.96 2.69
522 625 5.690364 GCATAGGCTTTTCTACACCCCTTAT 60.690 44.000 0.00 0.00 36.96 1.73
523 626 4.505324 AGGCTTTTCTACACCCCTTATC 57.495 45.455 0.00 0.00 0.00 1.75
524 627 4.112331 AGGCTTTTCTACACCCCTTATCT 58.888 43.478 0.00 0.00 0.00 1.98
525 628 5.286221 AGGCTTTTCTACACCCCTTATCTA 58.714 41.667 0.00 0.00 0.00 1.98
526 629 5.367060 AGGCTTTTCTACACCCCTTATCTAG 59.633 44.000 0.00 0.00 0.00 2.43
527 630 5.057819 GCTTTTCTACACCCCTTATCTAGC 58.942 45.833 0.00 0.00 0.00 3.42
528 631 5.612351 CTTTTCTACACCCCTTATCTAGCC 58.388 45.833 0.00 0.00 0.00 3.93
529 632 3.985553 TCTACACCCCTTATCTAGCCA 57.014 47.619 0.00 0.00 0.00 4.75
530 633 4.487282 TCTACACCCCTTATCTAGCCAT 57.513 45.455 0.00 0.00 0.00 4.40
531 634 4.827789 TCTACACCCCTTATCTAGCCATT 58.172 43.478 0.00 0.00 0.00 3.16
532 635 4.838986 TCTACACCCCTTATCTAGCCATTC 59.161 45.833 0.00 0.00 0.00 2.67
533 636 3.393687 ACACCCCTTATCTAGCCATTCA 58.606 45.455 0.00 0.00 0.00 2.57
534 637 3.983410 ACACCCCTTATCTAGCCATTCAT 59.017 43.478 0.00 0.00 0.00 2.57
535 638 4.416848 ACACCCCTTATCTAGCCATTCATT 59.583 41.667 0.00 0.00 0.00 2.57
536 639 5.103515 ACACCCCTTATCTAGCCATTCATTT 60.104 40.000 0.00 0.00 0.00 2.32
537 640 5.835280 CACCCCTTATCTAGCCATTCATTTT 59.165 40.000 0.00 0.00 0.00 1.82
538 641 6.015940 CACCCCTTATCTAGCCATTCATTTTC 60.016 42.308 0.00 0.00 0.00 2.29
539 642 5.182001 CCCCTTATCTAGCCATTCATTTTCG 59.818 44.000 0.00 0.00 0.00 3.46
540 643 5.335191 CCCTTATCTAGCCATTCATTTTCGC 60.335 44.000 0.00 0.00 0.00 4.70
541 644 5.239306 CCTTATCTAGCCATTCATTTTCGCA 59.761 40.000 0.00 0.00 0.00 5.10
542 645 6.072286 CCTTATCTAGCCATTCATTTTCGCAT 60.072 38.462 0.00 0.00 0.00 4.73
543 646 4.818534 TCTAGCCATTCATTTTCGCATC 57.181 40.909 0.00 0.00 0.00 3.91
544 647 4.198530 TCTAGCCATTCATTTTCGCATCA 58.801 39.130 0.00 0.00 0.00 3.07
545 648 3.155093 AGCCATTCATTTTCGCATCAC 57.845 42.857 0.00 0.00 0.00 3.06
546 649 1.847999 GCCATTCATTTTCGCATCACG 59.152 47.619 0.00 0.00 45.62 4.35
561 664 4.185413 ACGATTCGTGCGAGCAAT 57.815 50.000 11.56 0.00 39.18 3.56
562 665 2.456000 ACGATTCGTGCGAGCAATT 58.544 47.368 11.56 0.00 39.18 2.32
563 666 0.796312 ACGATTCGTGCGAGCAATTT 59.204 45.000 11.56 0.00 39.18 1.82
564 667 1.196808 ACGATTCGTGCGAGCAATTTT 59.803 42.857 11.56 0.00 39.18 1.82
565 668 2.241722 CGATTCGTGCGAGCAATTTTT 58.758 42.857 0.00 0.00 0.00 1.94
566 669 2.025571 CGATTCGTGCGAGCAATTTTTG 59.974 45.455 0.00 0.00 0.00 2.44
567 670 2.483583 TTCGTGCGAGCAATTTTTGT 57.516 40.000 0.00 0.00 0.00 2.83
568 671 1.752753 TCGTGCGAGCAATTTTTGTG 58.247 45.000 0.00 0.00 0.00 3.33
569 672 1.064803 TCGTGCGAGCAATTTTTGTGT 59.935 42.857 0.00 0.00 0.00 3.72
570 673 1.851666 CGTGCGAGCAATTTTTGTGTT 59.148 42.857 0.00 0.00 0.00 3.32
571 674 2.281234 CGTGCGAGCAATTTTTGTGTTT 59.719 40.909 0.00 0.00 0.00 2.83
572 675 3.241932 CGTGCGAGCAATTTTTGTGTTTT 60.242 39.130 0.00 0.00 0.00 2.43
573 676 4.646960 GTGCGAGCAATTTTTGTGTTTTT 58.353 34.783 0.00 0.00 0.00 1.94
624 727 8.740123 TGAACTTGAAACTTTATAGGACAACA 57.260 30.769 0.00 0.00 0.00 3.33
625 728 9.179909 TGAACTTGAAACTTTATAGGACAACAA 57.820 29.630 0.00 0.00 0.00 2.83
628 731 9.797556 ACTTGAAACTTTATAGGACAACAAAAC 57.202 29.630 0.00 0.00 0.00 2.43
629 732 9.796120 CTTGAAACTTTATAGGACAACAAAACA 57.204 29.630 0.00 0.00 0.00 2.83
641 744 8.974060 AGGACAACAAAACATTCTAACTAGAA 57.026 30.769 0.00 1.77 45.43 2.10
736 839 8.094798 TCTCATTTTGTATATTTATGTCGGGC 57.905 34.615 0.00 0.00 0.00 6.13
737 840 7.717436 TCTCATTTTGTATATTTATGTCGGGCA 59.283 33.333 0.00 0.00 0.00 5.36
738 841 8.226819 TCATTTTGTATATTTATGTCGGGCAA 57.773 30.769 0.00 0.00 0.00 4.52
739 842 8.687242 TCATTTTGTATATTTATGTCGGGCAAA 58.313 29.630 0.00 0.00 0.00 3.68
740 843 9.307121 CATTTTGTATATTTATGTCGGGCAAAA 57.693 29.630 0.00 0.00 37.58 2.44
741 844 9.877178 ATTTTGTATATTTATGTCGGGCAAAAA 57.123 25.926 0.00 0.00 37.03 1.94
782 885 9.337396 TCTCACATTGTAGTAAGAATGTTTTGT 57.663 29.630 6.20 0.00 44.72 2.83
783 886 9.950680 CTCACATTGTAGTAAGAATGTTTTGTT 57.049 29.630 6.20 0.00 44.72 2.83
784 887 9.729023 TCACATTGTAGTAAGAATGTTTTGTTG 57.271 29.630 6.20 0.00 44.72 3.33
785 888 9.515020 CACATTGTAGTAAGAATGTTTTGTTGT 57.485 29.630 6.20 0.00 44.72 3.32
786 889 9.730420 ACATTGTAGTAAGAATGTTTTGTTGTC 57.270 29.630 0.00 0.00 44.72 3.18
787 890 9.180678 CATTGTAGTAAGAATGTTTTGTTGTCC 57.819 33.333 0.00 0.00 32.95 4.02
788 891 8.514330 TTGTAGTAAGAATGTTTTGTTGTCCT 57.486 30.769 0.00 0.00 0.00 3.85
789 892 7.925993 TGTAGTAAGAATGTTTTGTTGTCCTG 58.074 34.615 0.00 0.00 0.00 3.86
790 893 5.831997 AGTAAGAATGTTTTGTTGTCCTGC 58.168 37.500 0.00 0.00 0.00 4.85
791 894 4.734398 AAGAATGTTTTGTTGTCCTGCA 57.266 36.364 0.00 0.00 0.00 4.41
792 895 4.734398 AGAATGTTTTGTTGTCCTGCAA 57.266 36.364 0.00 0.00 34.16 4.08
793 896 5.083533 AGAATGTTTTGTTGTCCTGCAAA 57.916 34.783 0.00 0.00 39.03 3.68
794 897 5.111293 AGAATGTTTTGTTGTCCTGCAAAG 58.889 37.500 0.00 0.00 39.03 2.77
795 898 3.951775 TGTTTTGTTGTCCTGCAAAGT 57.048 38.095 0.00 0.00 39.03 2.66
796 899 4.264460 TGTTTTGTTGTCCTGCAAAGTT 57.736 36.364 0.00 0.00 39.03 2.66
797 900 4.636249 TGTTTTGTTGTCCTGCAAAGTTT 58.364 34.783 0.00 0.00 39.03 2.66
798 901 4.450419 TGTTTTGTTGTCCTGCAAAGTTTG 59.550 37.500 11.41 11.41 39.03 2.93
799 902 4.527509 TTTGTTGTCCTGCAAAGTTTGA 57.472 36.364 19.82 3.95 39.03 2.69
800 903 3.781079 TGTTGTCCTGCAAAGTTTGAG 57.219 42.857 19.82 12.62 39.03 3.02
801 904 2.426738 TGTTGTCCTGCAAAGTTTGAGG 59.573 45.455 19.82 19.83 39.03 3.86
802 905 2.427095 GTTGTCCTGCAAAGTTTGAGGT 59.573 45.455 19.82 0.00 39.03 3.85
803 906 2.733956 TGTCCTGCAAAGTTTGAGGTT 58.266 42.857 19.82 0.00 32.93 3.50
804 907 2.687935 TGTCCTGCAAAGTTTGAGGTTC 59.312 45.455 19.82 16.88 32.93 3.62
805 908 2.687935 GTCCTGCAAAGTTTGAGGTTCA 59.312 45.455 19.82 6.27 32.93 3.18
806 909 3.319122 GTCCTGCAAAGTTTGAGGTTCAT 59.681 43.478 19.82 0.00 32.93 2.57
807 910 4.518970 GTCCTGCAAAGTTTGAGGTTCATA 59.481 41.667 19.82 4.56 32.93 2.15
808 911 5.183904 GTCCTGCAAAGTTTGAGGTTCATAT 59.816 40.000 19.82 0.00 32.93 1.78
809 912 5.183713 TCCTGCAAAGTTTGAGGTTCATATG 59.816 40.000 19.82 0.00 32.93 1.78
810 913 5.047802 CCTGCAAAGTTTGAGGTTCATATGT 60.048 40.000 19.82 0.00 0.00 2.29
811 914 6.012658 TGCAAAGTTTGAGGTTCATATGTC 57.987 37.500 19.82 0.00 0.00 3.06
812 915 5.088739 GCAAAGTTTGAGGTTCATATGTCG 58.911 41.667 19.82 0.00 0.00 4.35
813 916 5.334879 GCAAAGTTTGAGGTTCATATGTCGT 60.335 40.000 19.82 0.00 0.00 4.34
814 917 6.668323 CAAAGTTTGAGGTTCATATGTCGTT 58.332 36.000 10.19 0.00 0.00 3.85
815 918 6.877611 AAGTTTGAGGTTCATATGTCGTTT 57.122 33.333 1.90 0.00 0.00 3.60
816 919 6.877611 AGTTTGAGGTTCATATGTCGTTTT 57.122 33.333 1.90 0.00 0.00 2.43
817 920 6.668323 AGTTTGAGGTTCATATGTCGTTTTG 58.332 36.000 1.90 0.00 0.00 2.44
818 921 6.262273 AGTTTGAGGTTCATATGTCGTTTTGT 59.738 34.615 1.90 0.00 0.00 2.83
819 922 6.627395 TTGAGGTTCATATGTCGTTTTGTT 57.373 33.333 1.90 0.00 0.00 2.83
820 923 6.627395 TGAGGTTCATATGTCGTTTTGTTT 57.373 33.333 1.90 0.00 0.00 2.83
821 924 7.033530 TGAGGTTCATATGTCGTTTTGTTTT 57.966 32.000 1.90 0.00 0.00 2.43
822 925 6.915300 TGAGGTTCATATGTCGTTTTGTTTTG 59.085 34.615 1.90 0.00 0.00 2.44
823 926 7.033530 AGGTTCATATGTCGTTTTGTTTTGA 57.966 32.000 1.90 0.00 0.00 2.69
824 927 7.484975 AGGTTCATATGTCGTTTTGTTTTGAA 58.515 30.769 1.90 0.00 0.00 2.69
825 928 7.647715 AGGTTCATATGTCGTTTTGTTTTGAAG 59.352 33.333 1.90 0.00 0.00 3.02
826 929 7.096230 GGTTCATATGTCGTTTTGTTTTGAAGG 60.096 37.037 1.90 0.00 0.00 3.46
827 930 7.265647 TCATATGTCGTTTTGTTTTGAAGGA 57.734 32.000 1.90 0.00 0.00 3.36
828 931 7.708051 TCATATGTCGTTTTGTTTTGAAGGAA 58.292 30.769 1.90 0.00 0.00 3.36
829 932 7.646130 TCATATGTCGTTTTGTTTTGAAGGAAC 59.354 33.333 1.90 0.00 0.00 3.62
830 933 5.122512 TGTCGTTTTGTTTTGAAGGAACA 57.877 34.783 0.00 0.00 35.36 3.18
831 934 5.529791 TGTCGTTTTGTTTTGAAGGAACAA 58.470 33.333 0.00 0.00 43.16 2.83
869 972 8.770850 TTTATGTTTTAAGTTAGTTGTGTCGC 57.229 30.769 0.00 0.00 0.00 5.19
870 973 5.798015 TGTTTTAAGTTAGTTGTGTCGCA 57.202 34.783 0.00 0.00 0.00 5.10
871 974 5.561993 TGTTTTAAGTTAGTTGTGTCGCAC 58.438 37.500 3.44 3.44 34.56 5.34
872 975 4.440851 TTTAAGTTAGTTGTGTCGCACG 57.559 40.909 5.69 0.00 37.14 5.34
873 976 2.212869 AAGTTAGTTGTGTCGCACGA 57.787 45.000 0.00 0.00 37.14 4.35
874 977 2.212869 AGTTAGTTGTGTCGCACGAA 57.787 45.000 0.00 0.00 37.14 3.85
875 978 2.750948 AGTTAGTTGTGTCGCACGAAT 58.249 42.857 0.00 5.70 37.14 3.34
876 979 2.729882 AGTTAGTTGTGTCGCACGAATC 59.270 45.455 0.00 0.00 37.14 2.52
877 980 2.717580 TAGTTGTGTCGCACGAATCT 57.282 45.000 0.00 1.30 37.14 2.40
878 981 1.865865 AGTTGTGTCGCACGAATCTT 58.134 45.000 0.00 0.00 37.14 2.40
879 982 3.021269 AGTTGTGTCGCACGAATCTTA 57.979 42.857 0.00 0.00 37.14 2.10
880 983 3.386486 AGTTGTGTCGCACGAATCTTAA 58.614 40.909 0.00 0.00 37.14 1.85
881 984 3.805422 AGTTGTGTCGCACGAATCTTAAA 59.195 39.130 0.00 0.00 37.14 1.52
882 985 4.084537 AGTTGTGTCGCACGAATCTTAAAG 60.085 41.667 0.00 0.00 37.14 1.85
883 986 2.156891 TGTGTCGCACGAATCTTAAAGC 59.843 45.455 0.00 0.00 37.14 3.51
884 987 1.388768 TGTCGCACGAATCTTAAAGCG 59.611 47.619 0.00 0.00 45.79 4.68
885 988 0.996462 TCGCACGAATCTTAAAGCGG 59.004 50.000 0.00 0.00 44.67 5.52
886 989 0.719465 CGCACGAATCTTAAAGCGGT 59.281 50.000 0.00 0.00 41.30 5.68
887 990 1.921887 CGCACGAATCTTAAAGCGGTA 59.078 47.619 0.00 0.00 41.30 4.02
888 991 2.538449 CGCACGAATCTTAAAGCGGTAT 59.462 45.455 0.00 0.00 41.30 2.73
889 992 3.000925 CGCACGAATCTTAAAGCGGTATT 59.999 43.478 0.00 0.00 41.30 1.89
890 993 4.271687 GCACGAATCTTAAAGCGGTATTG 58.728 43.478 0.00 0.00 0.00 1.90
891 994 4.033587 GCACGAATCTTAAAGCGGTATTGA 59.966 41.667 0.00 0.00 0.00 2.57
892 995 5.446741 GCACGAATCTTAAAGCGGTATTGAA 60.447 40.000 0.00 0.00 0.00 2.69
893 996 6.185399 CACGAATCTTAAAGCGGTATTGAAG 58.815 40.000 0.00 0.00 0.00 3.02
894 997 5.293569 ACGAATCTTAAAGCGGTATTGAAGG 59.706 40.000 0.00 0.00 0.00 3.46
895 998 5.277345 CGAATCTTAAAGCGGTATTGAAGGG 60.277 44.000 0.00 0.00 0.00 3.95
896 999 4.563140 TCTTAAAGCGGTATTGAAGGGT 57.437 40.909 0.00 0.00 0.00 4.34
897 1000 5.680594 TCTTAAAGCGGTATTGAAGGGTA 57.319 39.130 0.00 0.00 0.00 3.69
898 1001 6.243216 TCTTAAAGCGGTATTGAAGGGTAT 57.757 37.500 0.00 0.00 0.00 2.73
899 1002 6.053005 TCTTAAAGCGGTATTGAAGGGTATG 58.947 40.000 0.00 0.00 0.00 2.39
900 1003 4.497291 AAAGCGGTATTGAAGGGTATGA 57.503 40.909 0.00 0.00 0.00 2.15
901 1004 4.497291 AAGCGGTATTGAAGGGTATGAA 57.503 40.909 0.00 0.00 0.00 2.57
902 1005 4.706842 AGCGGTATTGAAGGGTATGAAT 57.293 40.909 0.00 0.00 0.00 2.57
903 1006 5.818678 AGCGGTATTGAAGGGTATGAATA 57.181 39.130 0.00 0.00 0.00 1.75
904 1007 6.182507 AGCGGTATTGAAGGGTATGAATAA 57.817 37.500 0.00 0.00 0.00 1.40
905 1008 6.231211 AGCGGTATTGAAGGGTATGAATAAG 58.769 40.000 0.00 0.00 0.00 1.73
906 1009 6.042781 AGCGGTATTGAAGGGTATGAATAAGA 59.957 38.462 0.00 0.00 0.00 2.10
907 1010 6.369065 GCGGTATTGAAGGGTATGAATAAGAG 59.631 42.308 0.00 0.00 0.00 2.85
908 1011 6.874134 CGGTATTGAAGGGTATGAATAAGAGG 59.126 42.308 0.00 0.00 0.00 3.69
909 1012 7.472945 CGGTATTGAAGGGTATGAATAAGAGGT 60.473 40.741 0.00 0.00 0.00 3.85
910 1013 7.661847 GGTATTGAAGGGTATGAATAAGAGGTG 59.338 40.741 0.00 0.00 0.00 4.00
911 1014 6.636454 TTGAAGGGTATGAATAAGAGGTGT 57.364 37.500 0.00 0.00 0.00 4.16
912 1015 6.235231 TGAAGGGTATGAATAAGAGGTGTC 57.765 41.667 0.00 0.00 0.00 3.67
913 1016 5.130477 TGAAGGGTATGAATAAGAGGTGTCC 59.870 44.000 0.00 0.00 0.00 4.02
914 1017 4.631234 AGGGTATGAATAAGAGGTGTCCA 58.369 43.478 0.00 0.00 0.00 4.02
915 1018 4.656112 AGGGTATGAATAAGAGGTGTCCAG 59.344 45.833 0.00 0.00 0.00 3.86
916 1019 4.654262 GGGTATGAATAAGAGGTGTCCAGA 59.346 45.833 0.00 0.00 0.00 3.86
917 1020 5.130477 GGGTATGAATAAGAGGTGTCCAGAA 59.870 44.000 0.00 0.00 0.00 3.02
918 1021 6.352737 GGGTATGAATAAGAGGTGTCCAGAAA 60.353 42.308 0.00 0.00 0.00 2.52
919 1022 6.539103 GGTATGAATAAGAGGTGTCCAGAAAC 59.461 42.308 0.00 0.00 0.00 2.78
920 1023 4.906618 TGAATAAGAGGTGTCCAGAAACC 58.093 43.478 0.00 0.00 36.66 3.27
922 1025 5.783360 TGAATAAGAGGTGTCCAGAAACCTA 59.217 40.000 9.59 0.00 46.97 3.08
923 1026 6.443849 TGAATAAGAGGTGTCCAGAAACCTAT 59.556 38.462 9.59 3.81 46.97 2.57
924 1027 4.559862 AAGAGGTGTCCAGAAACCTATG 57.440 45.455 9.59 0.00 46.97 2.23
925 1028 2.237392 AGAGGTGTCCAGAAACCTATGC 59.763 50.000 9.59 0.00 46.97 3.14
926 1029 2.237392 GAGGTGTCCAGAAACCTATGCT 59.763 50.000 9.59 0.00 46.97 3.79
927 1030 2.644798 AGGTGTCCAGAAACCTATGCTT 59.355 45.455 7.81 0.00 45.15 3.91
928 1031 3.074538 AGGTGTCCAGAAACCTATGCTTT 59.925 43.478 7.81 0.00 45.15 3.51
929 1032 4.288626 AGGTGTCCAGAAACCTATGCTTTA 59.711 41.667 7.81 0.00 45.15 1.85
930 1033 5.044846 AGGTGTCCAGAAACCTATGCTTTAT 60.045 40.000 7.81 0.00 45.15 1.40
931 1034 6.157994 AGGTGTCCAGAAACCTATGCTTTATA 59.842 38.462 7.81 0.00 45.15 0.98
932 1035 6.826741 GGTGTCCAGAAACCTATGCTTTATAA 59.173 38.462 0.00 0.00 33.40 0.98
933 1036 7.338449 GGTGTCCAGAAACCTATGCTTTATAAA 59.662 37.037 0.00 0.00 33.40 1.40
934 1037 8.903820 GTGTCCAGAAACCTATGCTTTATAAAT 58.096 33.333 0.00 0.00 0.00 1.40
935 1038 9.120538 TGTCCAGAAACCTATGCTTTATAAATC 57.879 33.333 0.00 0.00 0.00 2.17
936 1039 8.568794 GTCCAGAAACCTATGCTTTATAAATCC 58.431 37.037 0.00 0.00 0.00 3.01
937 1040 7.444183 TCCAGAAACCTATGCTTTATAAATCCG 59.556 37.037 0.00 0.00 0.00 4.18
938 1041 7.078228 CAGAAACCTATGCTTTATAAATCCGC 58.922 38.462 0.00 0.00 0.00 5.54
939 1042 5.607119 AACCTATGCTTTATAAATCCGCG 57.393 39.130 0.00 0.00 0.00 6.46
940 1043 4.638304 ACCTATGCTTTATAAATCCGCGT 58.362 39.130 4.92 3.44 0.00 6.01
941 1044 5.061179 ACCTATGCTTTATAAATCCGCGTT 58.939 37.500 4.92 0.00 0.00 4.84
942 1045 5.178809 ACCTATGCTTTATAAATCCGCGTTC 59.821 40.000 4.92 0.00 0.00 3.95
943 1046 3.955771 TGCTTTATAAATCCGCGTTCC 57.044 42.857 4.92 0.00 0.00 3.62
1558 3627 2.132996 CCAGCTCTGGCGGATCTCT 61.133 63.158 2.59 0.00 44.73 3.10
1621 3690 0.179073 AGTGCAACAACGAGCTGAGT 60.179 50.000 0.00 0.00 41.43 3.41
1681 3750 1.371758 CCTGGACGACGACACACAG 60.372 63.158 0.00 0.00 0.00 3.66
1763 4381 2.732500 CACGGCGTGTTGTTATCACTTA 59.267 45.455 30.56 0.00 34.14 2.24
1771 4391 7.174082 GCGTGTTGTTATCACTTATCTTCTTC 58.826 38.462 0.00 0.00 34.14 2.87
1857 4660 1.522806 TTCGCGCTGGTGAACAAGT 60.523 52.632 5.56 0.00 37.73 3.16
1978 4782 0.393448 GGCGATCTTAGGGAAGGGTC 59.607 60.000 0.00 0.00 33.09 4.46
2128 4938 1.080298 CGACGCCGTTTCCTTACCT 60.080 57.895 0.00 0.00 0.00 3.08
2129 4939 1.349259 CGACGCCGTTTCCTTACCTG 61.349 60.000 0.00 0.00 0.00 4.00
2131 4941 2.396157 CGCCGTTTCCTTACCTGGC 61.396 63.158 0.00 0.00 39.10 4.85
2132 4942 1.002502 GCCGTTTCCTTACCTGGCT 60.003 57.895 0.00 0.00 39.38 4.75
2180 4995 2.331132 GCTGCCTTGCCTGTGTCTC 61.331 63.158 0.00 0.00 0.00 3.36
2297 5112 7.770897 AGTATTGTCTCAGATCACAAATAACCC 59.229 37.037 0.00 0.00 36.14 4.11
2341 5156 7.318141 AGCTTTGACCATGAATTTGAGTTATG 58.682 34.615 0.00 0.00 0.00 1.90
2346 5161 8.175925 TGACCATGAATTTGAGTTATGAAACA 57.824 30.769 0.00 0.00 38.12 2.83
2466 5282 1.780503 ATATCTGGCTGGCCCAAAAC 58.219 50.000 9.28 0.00 44.81 2.43
2476 5292 1.182385 GGCCCAAAACGACCCATTCA 61.182 55.000 0.00 0.00 0.00 2.57
2477 5293 0.038618 GCCCAAAACGACCCATTCAC 60.039 55.000 0.00 0.00 0.00 3.18
2497 5313 1.674651 GCCAACGAGGGGAGAAACC 60.675 63.158 0.00 0.00 38.09 3.27
2508 5324 2.574824 GGGGAGAAACCAGCTAACCTTA 59.425 50.000 0.00 0.00 41.20 2.69
2515 5331 5.817816 AGAAACCAGCTAACCTTATCATTCG 59.182 40.000 0.00 0.00 0.00 3.34
2524 5340 6.802834 GCTAACCTTATCATTCGCTAGTACTC 59.197 42.308 0.00 0.00 0.00 2.59
2525 5341 6.710597 AACCTTATCATTCGCTAGTACTCA 57.289 37.500 0.00 0.00 0.00 3.41
2528 5344 6.016943 ACCTTATCATTCGCTAGTACTCACTC 60.017 42.308 0.00 0.00 36.14 3.51
2601 5417 7.734942 TGGATGTATGTAGATGCATTGTAGAA 58.265 34.615 0.00 0.00 35.26 2.10
2604 5420 9.212641 GATGTATGTAGATGCATTGTAGAATGT 57.787 33.333 13.58 0.00 41.09 2.71
2624 5440 8.800332 AGAATGTAGATTCACTCATTTTGCTTT 58.200 29.630 14.46 0.00 40.59 3.51
2629 5445 9.282247 GTAGATTCACTCATTTTGCTTTGTATG 57.718 33.333 0.00 0.00 0.00 2.39
2632 5448 9.282247 GATTCACTCATTTTGCTTTGTATGTAG 57.718 33.333 0.00 0.00 0.00 2.74
2639 5455 9.237187 TCATTTTGCTTTGTATGTAGTCCATAA 57.763 29.630 0.00 0.00 37.77 1.90
2738 5555 4.543689 AGATGCAATGATGAGGGAACATT 58.456 39.130 0.00 0.00 35.10 2.71
2743 5560 4.467769 CAATGATGAGGGAACATTAGGCT 58.532 43.478 0.00 0.00 33.73 4.58
2746 5563 4.934356 TGATGAGGGAACATTAGGCTTTT 58.066 39.130 0.00 0.00 0.00 2.27
2751 5568 7.604657 TGAGGGAACATTAGGCTTTTAAAAA 57.395 32.000 1.66 0.00 0.00 1.94
2782 5599 0.537371 AAAGCCTCGTTTCAGGTGGG 60.537 55.000 0.00 0.00 35.72 4.61
2783 5600 2.359975 GCCTCGTTTCAGGTGGGG 60.360 66.667 0.00 0.00 35.72 4.96
2791 5609 2.894765 CGTTTCAGGTGGGGGTAAAAAT 59.105 45.455 0.00 0.00 0.00 1.82
2795 5613 5.342361 TTCAGGTGGGGGTAAAAATTACT 57.658 39.130 0.80 0.00 0.00 2.24
2806 5624 9.532494 GGGGGTAAAAATTACTAGGACTTAAAA 57.468 33.333 0.00 0.00 0.00 1.52
2820 5638 4.330347 GGACTTAAAAGAGATGCCGAGAAC 59.670 45.833 0.00 0.00 0.00 3.01
2821 5639 3.927142 ACTTAAAAGAGATGCCGAGAACG 59.073 43.478 0.00 0.00 39.43 3.95
2942 5761 3.731652 TCCAAAAACTGCCATGTGAAG 57.268 42.857 0.00 0.00 0.00 3.02
2949 5768 4.568152 AACTGCCATGTGAAGTACAAAC 57.432 40.909 0.00 0.00 43.77 2.93
2950 5769 3.550820 ACTGCCATGTGAAGTACAAACA 58.449 40.909 0.00 0.00 43.77 2.83
2951 5770 3.565482 ACTGCCATGTGAAGTACAAACAG 59.435 43.478 0.00 0.00 43.77 3.16
2952 5771 2.293122 TGCCATGTGAAGTACAAACAGC 59.707 45.455 0.00 0.00 43.77 4.40
2953 5772 2.554032 GCCATGTGAAGTACAAACAGCT 59.446 45.455 0.00 0.00 43.77 4.24
2954 5773 3.365364 GCCATGTGAAGTACAAACAGCTC 60.365 47.826 0.00 0.00 43.77 4.09
2955 5774 4.067896 CCATGTGAAGTACAAACAGCTCT 58.932 43.478 0.00 0.00 43.77 4.09
2956 5775 4.153117 CCATGTGAAGTACAAACAGCTCTC 59.847 45.833 0.00 0.00 43.77 3.20
2957 5776 4.672587 TGTGAAGTACAAACAGCTCTCT 57.327 40.909 0.00 0.00 36.06 3.10
2958 5777 4.371786 TGTGAAGTACAAACAGCTCTCTG 58.628 43.478 0.00 0.00 40.27 3.35
2959 5778 4.141937 TGTGAAGTACAAACAGCTCTCTGT 60.142 41.667 0.00 0.00 44.14 3.41
2960 5779 5.068591 TGTGAAGTACAAACAGCTCTCTGTA 59.931 40.000 0.00 0.00 43.17 2.74
2961 5780 6.406512 TGTGAAGTACAAACAGCTCTCTGTAA 60.407 38.462 0.00 0.00 43.17 2.41
2962 5781 7.846593 TGTGAAGTACAAACAGCTCTCTGTAAA 60.847 37.037 0.00 0.00 43.17 2.01
2971 5790 5.608676 CAGCTCTCTGTAAATATGCCATG 57.391 43.478 0.00 0.00 35.61 3.66
2972 5791 5.061853 CAGCTCTCTGTAAATATGCCATGT 58.938 41.667 0.00 0.00 35.61 3.21
2973 5792 5.049612 CAGCTCTCTGTAAATATGCCATGTG 60.050 44.000 0.00 0.00 35.61 3.21
2974 5793 4.818546 GCTCTCTGTAAATATGCCATGTGT 59.181 41.667 0.00 0.00 0.00 3.72
2975 5794 5.991606 GCTCTCTGTAAATATGCCATGTGTA 59.008 40.000 0.00 0.00 0.00 2.90
2976 5795 6.146837 GCTCTCTGTAAATATGCCATGTGTAG 59.853 42.308 0.00 0.00 0.00 2.74
2977 5796 7.124573 TCTCTGTAAATATGCCATGTGTAGT 57.875 36.000 0.00 0.00 0.00 2.73
2978 5797 8.245195 TCTCTGTAAATATGCCATGTGTAGTA 57.755 34.615 0.00 0.00 0.00 1.82
2979 5798 8.700973 TCTCTGTAAATATGCCATGTGTAGTAA 58.299 33.333 0.00 0.00 0.00 2.24
2980 5799 8.887036 TCTGTAAATATGCCATGTGTAGTAAG 57.113 34.615 0.00 0.00 0.00 2.34
2981 5800 8.482943 TCTGTAAATATGCCATGTGTAGTAAGT 58.517 33.333 0.00 0.00 0.00 2.24
2982 5801 9.758651 CTGTAAATATGCCATGTGTAGTAAGTA 57.241 33.333 0.00 0.00 0.00 2.24
2983 5802 9.537192 TGTAAATATGCCATGTGTAGTAAGTAC 57.463 33.333 0.00 0.00 0.00 2.73
2984 5803 9.537192 GTAAATATGCCATGTGTAGTAAGTACA 57.463 33.333 0.00 0.00 39.47 2.90
2986 5805 9.456147 AAATATGCCATGTGTAGTAAGTACAAA 57.544 29.630 0.00 0.00 43.49 2.83
2987 5806 9.627123 AATATGCCATGTGTAGTAAGTACAAAT 57.373 29.630 0.00 0.00 43.49 2.32
2988 5807 7.938140 ATGCCATGTGTAGTAAGTACAAATT 57.062 32.000 0.00 0.00 43.49 1.82
2999 5818 9.550811 GTAGTAAGTACAAATTCCGAAAAATGG 57.449 33.333 0.00 0.00 0.00 3.16
3022 5841 6.208402 TGGCATGAGAACTAATAAGTGCAAAA 59.792 34.615 0.00 0.00 35.62 2.44
3023 5842 6.749118 GGCATGAGAACTAATAAGTGCAAAAG 59.251 38.462 0.00 0.00 35.62 2.27
3072 5891 9.772973 TTGAGTAGTACATAAAATTGTGTGACT 57.227 29.630 2.52 6.37 34.29 3.41
3086 5905 5.528043 TGTGTGACTTTTTGCCATGTAAT 57.472 34.783 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 1.041437 GAACCCGGGTCTCTATCCAG 58.959 60.000 30.40 0.00 0.00 3.86
262 343 2.657237 GTAGTGCCTGTCCGCTGT 59.343 61.111 0.00 0.00 0.00 4.40
304 403 2.478722 GAAGGGAGGGAGGGAGGTGT 62.479 65.000 0.00 0.00 0.00 4.16
473 576 9.476202 GCTTTCTCAAATGTTAACCTTATTGTT 57.524 29.630 2.48 0.00 0.00 2.83
474 577 8.637986 TGCTTTCTCAAATGTTAACCTTATTGT 58.362 29.630 2.48 0.00 0.00 2.71
475 578 9.643693 ATGCTTTCTCAAATGTTAACCTTATTG 57.356 29.630 2.48 3.67 0.00 1.90
478 581 8.956426 CCTATGCTTTCTCAAATGTTAACCTTA 58.044 33.333 2.48 0.00 0.00 2.69
479 582 7.577616 GCCTATGCTTTCTCAAATGTTAACCTT 60.578 37.037 2.48 0.00 33.53 3.50
480 583 6.127619 GCCTATGCTTTCTCAAATGTTAACCT 60.128 38.462 2.48 0.00 33.53 3.50
481 584 6.036470 GCCTATGCTTTCTCAAATGTTAACC 58.964 40.000 2.48 0.00 33.53 2.85
498 601 2.092375 AGGGGTGTAGAAAAGCCTATGC 60.092 50.000 0.00 0.00 35.47 3.14
499 602 3.933861 AGGGGTGTAGAAAAGCCTATG 57.066 47.619 0.00 0.00 35.47 2.23
500 603 5.911766 AGATAAGGGGTGTAGAAAAGCCTAT 59.088 40.000 0.00 0.00 35.47 2.57
501 604 5.286221 AGATAAGGGGTGTAGAAAAGCCTA 58.714 41.667 0.00 0.00 35.47 3.93
502 605 4.112331 AGATAAGGGGTGTAGAAAAGCCT 58.888 43.478 0.00 0.00 35.47 4.58
503 606 4.505324 AGATAAGGGGTGTAGAAAAGCC 57.495 45.455 0.00 0.00 34.32 4.35
504 607 5.057819 GCTAGATAAGGGGTGTAGAAAAGC 58.942 45.833 0.00 0.00 0.00 3.51
505 608 5.130477 TGGCTAGATAAGGGGTGTAGAAAAG 59.870 44.000 0.00 0.00 0.00 2.27
506 609 5.034200 TGGCTAGATAAGGGGTGTAGAAAA 58.966 41.667 0.00 0.00 0.00 2.29
507 610 4.627015 TGGCTAGATAAGGGGTGTAGAAA 58.373 43.478 0.00 0.00 0.00 2.52
508 611 4.274794 TGGCTAGATAAGGGGTGTAGAA 57.725 45.455 0.00 0.00 0.00 2.10
509 612 3.985553 TGGCTAGATAAGGGGTGTAGA 57.014 47.619 0.00 0.00 0.00 2.59
510 613 4.593206 TGAATGGCTAGATAAGGGGTGTAG 59.407 45.833 0.00 0.00 0.00 2.74
511 614 4.562767 TGAATGGCTAGATAAGGGGTGTA 58.437 43.478 0.00 0.00 0.00 2.90
512 615 3.393687 TGAATGGCTAGATAAGGGGTGT 58.606 45.455 0.00 0.00 0.00 4.16
513 616 4.647564 ATGAATGGCTAGATAAGGGGTG 57.352 45.455 0.00 0.00 0.00 4.61
514 617 5.669798 AAATGAATGGCTAGATAAGGGGT 57.330 39.130 0.00 0.00 0.00 4.95
515 618 5.182001 CGAAAATGAATGGCTAGATAAGGGG 59.818 44.000 0.00 0.00 0.00 4.79
516 619 5.335191 GCGAAAATGAATGGCTAGATAAGGG 60.335 44.000 0.00 0.00 0.00 3.95
517 620 5.239306 TGCGAAAATGAATGGCTAGATAAGG 59.761 40.000 0.00 0.00 0.00 2.69
518 621 6.304356 TGCGAAAATGAATGGCTAGATAAG 57.696 37.500 0.00 0.00 0.00 1.73
519 622 6.486320 TGATGCGAAAATGAATGGCTAGATAA 59.514 34.615 0.00 0.00 0.00 1.75
520 623 5.997129 TGATGCGAAAATGAATGGCTAGATA 59.003 36.000 0.00 0.00 0.00 1.98
521 624 4.823442 TGATGCGAAAATGAATGGCTAGAT 59.177 37.500 0.00 0.00 0.00 1.98
522 625 4.035558 GTGATGCGAAAATGAATGGCTAGA 59.964 41.667 0.00 0.00 0.00 2.43
523 626 4.285292 GTGATGCGAAAATGAATGGCTAG 58.715 43.478 0.00 0.00 0.00 3.42
524 627 3.242706 CGTGATGCGAAAATGAATGGCTA 60.243 43.478 0.00 0.00 44.77 3.93
525 628 2.478370 CGTGATGCGAAAATGAATGGCT 60.478 45.455 0.00 0.00 44.77 4.75
526 629 1.847999 CGTGATGCGAAAATGAATGGC 59.152 47.619 0.00 0.00 44.77 4.40
544 647 0.796312 AAATTGCTCGCACGAATCGT 59.204 45.000 0.96 0.96 42.36 3.73
545 648 1.882198 AAAATTGCTCGCACGAATCG 58.118 45.000 0.00 0.00 0.00 3.34
546 649 2.979813 ACAAAAATTGCTCGCACGAATC 59.020 40.909 0.00 0.00 0.00 2.52
547 650 2.725723 CACAAAAATTGCTCGCACGAAT 59.274 40.909 0.00 0.00 0.00 3.34
548 651 2.115595 CACAAAAATTGCTCGCACGAA 58.884 42.857 0.00 0.00 0.00 3.85
549 652 1.064803 ACACAAAAATTGCTCGCACGA 59.935 42.857 0.00 0.00 0.00 4.35
550 653 1.476074 ACACAAAAATTGCTCGCACG 58.524 45.000 0.00 0.00 0.00 5.34
551 654 3.923827 AAACACAAAAATTGCTCGCAC 57.076 38.095 0.00 0.00 0.00 5.34
552 655 4.935885 AAAAACACAAAAATTGCTCGCA 57.064 31.818 0.00 0.00 0.00 5.10
598 701 9.349713 TGTTGTCCTATAAAGTTTCAAGTTCAT 57.650 29.630 0.00 0.00 0.00 2.57
599 702 8.740123 TGTTGTCCTATAAAGTTTCAAGTTCA 57.260 30.769 0.00 0.00 0.00 3.18
602 705 9.797556 GTTTTGTTGTCCTATAAAGTTTCAAGT 57.202 29.630 0.00 0.00 0.00 3.16
603 706 9.796120 TGTTTTGTTGTCCTATAAAGTTTCAAG 57.204 29.630 0.00 0.00 0.00 3.02
616 719 8.974060 TTCTAGTTAGAATGTTTTGTTGTCCT 57.026 30.769 0.00 0.00 37.40 3.85
710 813 8.730680 GCCCGACATAAATATACAAAATGAGAT 58.269 33.333 0.00 0.00 0.00 2.75
711 814 7.717436 TGCCCGACATAAATATACAAAATGAGA 59.283 33.333 0.00 0.00 0.00 3.27
712 815 7.870826 TGCCCGACATAAATATACAAAATGAG 58.129 34.615 0.00 0.00 0.00 2.90
713 816 7.809546 TGCCCGACATAAATATACAAAATGA 57.190 32.000 0.00 0.00 0.00 2.57
714 817 8.864069 TTTGCCCGACATAAATATACAAAATG 57.136 30.769 0.00 0.00 0.00 2.32
715 818 9.877178 TTTTTGCCCGACATAAATATACAAAAT 57.123 25.926 0.00 0.00 35.25 1.82
756 859 9.337396 ACAAAACATTCTTACTACAATGTGAGA 57.663 29.630 0.00 0.00 41.42 3.27
757 860 9.950680 AACAAAACATTCTTACTACAATGTGAG 57.049 29.630 0.00 0.00 41.42 3.51
758 861 9.729023 CAACAAAACATTCTTACTACAATGTGA 57.271 29.630 0.00 0.00 41.42 3.58
759 862 9.515020 ACAACAAAACATTCTTACTACAATGTG 57.485 29.630 0.00 0.00 41.42 3.21
760 863 9.730420 GACAACAAAACATTCTTACTACAATGT 57.270 29.630 0.00 0.00 43.61 2.71
761 864 9.180678 GGACAACAAAACATTCTTACTACAATG 57.819 33.333 0.00 0.00 36.28 2.82
762 865 9.131791 AGGACAACAAAACATTCTTACTACAAT 57.868 29.630 0.00 0.00 0.00 2.71
763 866 8.402472 CAGGACAACAAAACATTCTTACTACAA 58.598 33.333 0.00 0.00 0.00 2.41
764 867 7.468084 GCAGGACAACAAAACATTCTTACTACA 60.468 37.037 0.00 0.00 0.00 2.74
765 868 6.856426 GCAGGACAACAAAACATTCTTACTAC 59.144 38.462 0.00 0.00 0.00 2.73
766 869 6.544197 TGCAGGACAACAAAACATTCTTACTA 59.456 34.615 0.00 0.00 0.00 1.82
767 870 5.359576 TGCAGGACAACAAAACATTCTTACT 59.640 36.000 0.00 0.00 0.00 2.24
768 871 5.587289 TGCAGGACAACAAAACATTCTTAC 58.413 37.500 0.00 0.00 0.00 2.34
769 872 5.843673 TGCAGGACAACAAAACATTCTTA 57.156 34.783 0.00 0.00 0.00 2.10
770 873 4.734398 TGCAGGACAACAAAACATTCTT 57.266 36.364 0.00 0.00 0.00 2.52
771 874 4.734398 TTGCAGGACAACAAAACATTCT 57.266 36.364 0.00 0.00 31.73 2.40
772 875 4.869861 ACTTTGCAGGACAACAAAACATTC 59.130 37.500 0.00 0.00 38.23 2.67
773 876 4.831107 ACTTTGCAGGACAACAAAACATT 58.169 34.783 0.00 0.00 38.23 2.71
774 877 4.470334 ACTTTGCAGGACAACAAAACAT 57.530 36.364 0.00 0.00 38.23 2.71
775 878 3.951775 ACTTTGCAGGACAACAAAACA 57.048 38.095 0.00 0.00 38.23 2.83
776 879 4.688413 TCAAACTTTGCAGGACAACAAAAC 59.312 37.500 0.00 0.00 38.23 2.43
777 880 4.887748 TCAAACTTTGCAGGACAACAAAA 58.112 34.783 0.00 0.00 38.23 2.44
778 881 4.493547 CTCAAACTTTGCAGGACAACAAA 58.506 39.130 0.00 0.00 38.23 2.83
779 882 3.119173 CCTCAAACTTTGCAGGACAACAA 60.119 43.478 11.65 0.00 38.23 2.83
780 883 2.426738 CCTCAAACTTTGCAGGACAACA 59.573 45.455 11.65 0.00 38.23 3.33
781 884 2.427095 ACCTCAAACTTTGCAGGACAAC 59.573 45.455 19.03 0.00 38.23 3.32
782 885 2.733956 ACCTCAAACTTTGCAGGACAA 58.266 42.857 19.03 0.00 34.30 3.18
783 886 2.435372 ACCTCAAACTTTGCAGGACA 57.565 45.000 19.03 0.00 34.30 4.02
784 887 2.687935 TGAACCTCAAACTTTGCAGGAC 59.312 45.455 19.03 14.38 34.30 3.85
785 888 3.011566 TGAACCTCAAACTTTGCAGGA 57.988 42.857 19.03 3.22 34.30 3.86
786 889 5.047802 ACATATGAACCTCAAACTTTGCAGG 60.048 40.000 10.38 13.97 35.46 4.85
787 890 6.017400 ACATATGAACCTCAAACTTTGCAG 57.983 37.500 10.38 0.00 0.00 4.41
788 891 5.334802 CGACATATGAACCTCAAACTTTGCA 60.335 40.000 10.38 0.00 0.00 4.08
789 892 5.088739 CGACATATGAACCTCAAACTTTGC 58.911 41.667 10.38 0.00 0.00 3.68
790 893 6.241207 ACGACATATGAACCTCAAACTTTG 57.759 37.500 10.38 0.00 0.00 2.77
791 894 6.877611 AACGACATATGAACCTCAAACTTT 57.122 33.333 10.38 0.00 0.00 2.66
792 895 6.877611 AAACGACATATGAACCTCAAACTT 57.122 33.333 10.38 0.00 0.00 2.66
793 896 6.262273 ACAAAACGACATATGAACCTCAAACT 59.738 34.615 10.38 0.00 0.00 2.66
794 897 6.435428 ACAAAACGACATATGAACCTCAAAC 58.565 36.000 10.38 0.00 0.00 2.93
795 898 6.627395 ACAAAACGACATATGAACCTCAAA 57.373 33.333 10.38 0.00 0.00 2.69
796 899 6.627395 AACAAAACGACATATGAACCTCAA 57.373 33.333 10.38 0.00 0.00 3.02
797 900 6.627395 AAACAAAACGACATATGAACCTCA 57.373 33.333 10.38 0.00 0.00 3.86
798 901 7.136119 TCAAAACAAAACGACATATGAACCTC 58.864 34.615 10.38 0.00 0.00 3.85
799 902 7.033530 TCAAAACAAAACGACATATGAACCT 57.966 32.000 10.38 0.00 0.00 3.50
800 903 7.096230 CCTTCAAAACAAAACGACATATGAACC 60.096 37.037 10.38 0.00 0.00 3.62
801 904 7.646130 TCCTTCAAAACAAAACGACATATGAAC 59.354 33.333 10.38 2.28 0.00 3.18
802 905 7.708051 TCCTTCAAAACAAAACGACATATGAA 58.292 30.769 10.38 0.00 0.00 2.57
803 906 7.265647 TCCTTCAAAACAAAACGACATATGA 57.734 32.000 10.38 0.00 0.00 2.15
804 907 7.433719 TGTTCCTTCAAAACAAAACGACATATG 59.566 33.333 0.00 0.00 33.86 1.78
805 908 7.484975 TGTTCCTTCAAAACAAAACGACATAT 58.515 30.769 0.00 0.00 33.86 1.78
806 909 6.853720 TGTTCCTTCAAAACAAAACGACATA 58.146 32.000 0.00 0.00 33.86 2.29
807 910 5.715070 TGTTCCTTCAAAACAAAACGACAT 58.285 33.333 0.00 0.00 33.86 3.06
808 911 5.122512 TGTTCCTTCAAAACAAAACGACA 57.877 34.783 0.00 0.00 33.86 4.35
843 946 9.389570 GCGACACAACTAACTTAAAACATAAAT 57.610 29.630 0.00 0.00 0.00 1.40
844 947 8.396390 TGCGACACAACTAACTTAAAACATAAA 58.604 29.630 0.00 0.00 0.00 1.40
845 948 7.851963 GTGCGACACAACTAACTTAAAACATAA 59.148 33.333 5.30 0.00 34.08 1.90
846 949 7.346695 GTGCGACACAACTAACTTAAAACATA 58.653 34.615 5.30 0.00 34.08 2.29
847 950 6.196571 GTGCGACACAACTAACTTAAAACAT 58.803 36.000 5.30 0.00 34.08 2.71
848 951 5.561993 GTGCGACACAACTAACTTAAAACA 58.438 37.500 5.30 0.00 34.08 2.83
849 952 4.663091 CGTGCGACACAACTAACTTAAAAC 59.337 41.667 9.95 0.00 33.40 2.43
850 953 4.565962 TCGTGCGACACAACTAACTTAAAA 59.434 37.500 9.95 0.00 33.40 1.52
851 954 4.111198 TCGTGCGACACAACTAACTTAAA 58.889 39.130 9.95 0.00 33.40 1.52
852 955 3.704512 TCGTGCGACACAACTAACTTAA 58.295 40.909 9.95 0.00 33.40 1.85
853 956 3.352554 TCGTGCGACACAACTAACTTA 57.647 42.857 9.95 0.00 33.40 2.24
854 957 2.212869 TCGTGCGACACAACTAACTT 57.787 45.000 9.95 0.00 33.40 2.66
855 958 2.212869 TTCGTGCGACACAACTAACT 57.787 45.000 9.95 0.00 33.40 2.24
856 959 2.729882 AGATTCGTGCGACACAACTAAC 59.270 45.455 9.95 0.00 33.40 2.34
857 960 3.021269 AGATTCGTGCGACACAACTAA 57.979 42.857 9.95 0.72 33.40 2.24
858 961 2.717580 AGATTCGTGCGACACAACTA 57.282 45.000 9.95 0.00 33.40 2.24
859 962 1.865865 AAGATTCGTGCGACACAACT 58.134 45.000 9.95 1.90 33.40 3.16
860 963 3.781341 TTAAGATTCGTGCGACACAAC 57.219 42.857 9.95 0.07 33.40 3.32
861 964 3.363575 GCTTTAAGATTCGTGCGACACAA 60.364 43.478 9.95 4.76 33.40 3.33
862 965 2.156891 GCTTTAAGATTCGTGCGACACA 59.843 45.455 9.95 0.00 33.40 3.72
863 966 2.759038 GCTTTAAGATTCGTGCGACAC 58.241 47.619 0.00 0.00 0.00 3.67
864 967 1.388768 CGCTTTAAGATTCGTGCGACA 59.611 47.619 0.00 0.00 45.15 4.35
865 968 1.266891 CCGCTTTAAGATTCGTGCGAC 60.267 52.381 6.74 0.00 45.15 5.19
866 969 0.996462 CCGCTTTAAGATTCGTGCGA 59.004 50.000 6.74 0.00 45.15 5.10
867 970 0.719465 ACCGCTTTAAGATTCGTGCG 59.281 50.000 0.00 0.00 42.52 5.34
868 971 4.033587 TCAATACCGCTTTAAGATTCGTGC 59.966 41.667 0.00 0.00 0.00 5.34
869 972 5.712217 TCAATACCGCTTTAAGATTCGTG 57.288 39.130 0.00 0.00 0.00 4.35
870 973 5.293569 CCTTCAATACCGCTTTAAGATTCGT 59.706 40.000 0.00 0.00 0.00 3.85
871 974 5.277345 CCCTTCAATACCGCTTTAAGATTCG 60.277 44.000 0.00 0.00 0.00 3.34
872 975 5.589050 ACCCTTCAATACCGCTTTAAGATTC 59.411 40.000 0.00 0.00 0.00 2.52
873 976 5.506708 ACCCTTCAATACCGCTTTAAGATT 58.493 37.500 0.00 0.00 0.00 2.40
874 977 5.112129 ACCCTTCAATACCGCTTTAAGAT 57.888 39.130 0.00 0.00 0.00 2.40
875 978 4.563140 ACCCTTCAATACCGCTTTAAGA 57.437 40.909 0.00 0.00 0.00 2.10
876 979 6.053005 TCATACCCTTCAATACCGCTTTAAG 58.947 40.000 0.00 0.00 0.00 1.85
877 980 5.991861 TCATACCCTTCAATACCGCTTTAA 58.008 37.500 0.00 0.00 0.00 1.52
878 981 5.617528 TCATACCCTTCAATACCGCTTTA 57.382 39.130 0.00 0.00 0.00 1.85
879 982 4.497291 TCATACCCTTCAATACCGCTTT 57.503 40.909 0.00 0.00 0.00 3.51
880 983 4.497291 TTCATACCCTTCAATACCGCTT 57.503 40.909 0.00 0.00 0.00 4.68
881 984 4.706842 ATTCATACCCTTCAATACCGCT 57.293 40.909 0.00 0.00 0.00 5.52
882 985 6.228258 TCTTATTCATACCCTTCAATACCGC 58.772 40.000 0.00 0.00 0.00 5.68
883 986 6.874134 CCTCTTATTCATACCCTTCAATACCG 59.126 42.308 0.00 0.00 0.00 4.02
884 987 7.661847 CACCTCTTATTCATACCCTTCAATACC 59.338 40.741 0.00 0.00 0.00 2.73
885 988 8.211629 ACACCTCTTATTCATACCCTTCAATAC 58.788 37.037 0.00 0.00 0.00 1.89
886 989 8.331931 ACACCTCTTATTCATACCCTTCAATA 57.668 34.615 0.00 0.00 0.00 1.90
887 990 7.213178 ACACCTCTTATTCATACCCTTCAAT 57.787 36.000 0.00 0.00 0.00 2.57
888 991 6.352737 GGACACCTCTTATTCATACCCTTCAA 60.353 42.308 0.00 0.00 0.00 2.69
889 992 5.130477 GGACACCTCTTATTCATACCCTTCA 59.870 44.000 0.00 0.00 0.00 3.02
890 993 5.130477 TGGACACCTCTTATTCATACCCTTC 59.870 44.000 0.00 0.00 0.00 3.46
891 994 5.036916 TGGACACCTCTTATTCATACCCTT 58.963 41.667 0.00 0.00 0.00 3.95
892 995 4.631234 TGGACACCTCTTATTCATACCCT 58.369 43.478 0.00 0.00 0.00 4.34
893 996 4.654262 TCTGGACACCTCTTATTCATACCC 59.346 45.833 0.00 0.00 0.00 3.69
894 997 5.871396 TCTGGACACCTCTTATTCATACC 57.129 43.478 0.00 0.00 0.00 2.73
895 998 6.539103 GGTTTCTGGACACCTCTTATTCATAC 59.461 42.308 0.00 0.00 0.00 2.39
896 999 6.443849 AGGTTTCTGGACACCTCTTATTCATA 59.556 38.462 2.89 0.00 39.37 2.15
897 1000 5.251700 AGGTTTCTGGACACCTCTTATTCAT 59.748 40.000 2.89 0.00 39.37 2.57
898 1001 4.597507 AGGTTTCTGGACACCTCTTATTCA 59.402 41.667 2.89 0.00 39.37 2.57
899 1002 5.167303 AGGTTTCTGGACACCTCTTATTC 57.833 43.478 2.89 0.00 39.37 1.75
900 1003 6.653989 CATAGGTTTCTGGACACCTCTTATT 58.346 40.000 11.17 0.00 42.81 1.40
901 1004 5.396884 GCATAGGTTTCTGGACACCTCTTAT 60.397 44.000 11.17 0.00 42.81 1.73
902 1005 4.081087 GCATAGGTTTCTGGACACCTCTTA 60.081 45.833 11.17 0.00 42.81 2.10
903 1006 3.307762 GCATAGGTTTCTGGACACCTCTT 60.308 47.826 11.17 0.00 42.81 2.85
904 1007 2.237392 GCATAGGTTTCTGGACACCTCT 59.763 50.000 11.17 0.59 42.81 3.69
905 1008 2.237392 AGCATAGGTTTCTGGACACCTC 59.763 50.000 11.17 0.00 42.81 3.85
906 1009 2.269940 AGCATAGGTTTCTGGACACCT 58.730 47.619 12.29 12.29 45.85 4.00
907 1010 2.789409 AGCATAGGTTTCTGGACACC 57.211 50.000 0.00 0.00 0.00 4.16
908 1011 7.859325 TTATAAAGCATAGGTTTCTGGACAC 57.141 36.000 0.00 0.00 34.94 3.67
909 1012 9.120538 GATTTATAAAGCATAGGTTTCTGGACA 57.879 33.333 8.56 0.00 34.94 4.02
910 1013 8.568794 GGATTTATAAAGCATAGGTTTCTGGAC 58.431 37.037 14.91 0.00 34.94 4.02
911 1014 7.444183 CGGATTTATAAAGCATAGGTTTCTGGA 59.556 37.037 14.91 0.00 34.94 3.86
912 1015 7.584987 CGGATTTATAAAGCATAGGTTTCTGG 58.415 38.462 14.91 0.00 34.94 3.86
913 1016 7.078228 GCGGATTTATAAAGCATAGGTTTCTG 58.922 38.462 14.91 5.25 34.94 3.02
914 1017 6.073222 CGCGGATTTATAAAGCATAGGTTTCT 60.073 38.462 14.91 0.00 34.94 2.52
915 1018 6.077838 CGCGGATTTATAAAGCATAGGTTTC 58.922 40.000 14.91 0.00 34.94 2.78
916 1019 5.529800 ACGCGGATTTATAAAGCATAGGTTT 59.470 36.000 12.47 0.00 37.09 3.27
917 1020 5.061179 ACGCGGATTTATAAAGCATAGGTT 58.939 37.500 12.47 0.00 0.00 3.50
918 1021 4.638304 ACGCGGATTTATAAAGCATAGGT 58.362 39.130 12.47 4.72 0.00 3.08
919 1022 5.390567 GGAACGCGGATTTATAAAGCATAGG 60.391 44.000 12.47 4.17 0.00 2.57
920 1023 5.178623 TGGAACGCGGATTTATAAAGCATAG 59.821 40.000 12.47 7.55 0.00 2.23
921 1024 5.057819 TGGAACGCGGATTTATAAAGCATA 58.942 37.500 12.47 0.00 0.00 3.14
922 1025 3.880490 TGGAACGCGGATTTATAAAGCAT 59.120 39.130 12.47 0.47 0.00 3.79
923 1026 3.271729 TGGAACGCGGATTTATAAAGCA 58.728 40.909 12.47 0.00 0.00 3.91
924 1027 3.955771 TGGAACGCGGATTTATAAAGC 57.044 42.857 12.47 4.86 0.00 3.51
925 1028 5.632959 TGTTTGGAACGCGGATTTATAAAG 58.367 37.500 12.47 0.00 0.00 1.85
926 1029 5.624344 TGTTTGGAACGCGGATTTATAAA 57.376 34.783 12.47 0.00 0.00 1.40
927 1030 5.624344 TTGTTTGGAACGCGGATTTATAA 57.376 34.783 12.47 0.00 0.00 0.98
928 1031 5.821516 ATTGTTTGGAACGCGGATTTATA 57.178 34.783 12.47 0.00 0.00 0.98
929 1032 4.712122 ATTGTTTGGAACGCGGATTTAT 57.288 36.364 12.47 0.00 0.00 1.40
930 1033 5.624344 TTATTGTTTGGAACGCGGATTTA 57.376 34.783 12.47 0.00 0.00 1.40
931 1034 4.506886 TTATTGTTTGGAACGCGGATTT 57.493 36.364 12.47 0.00 0.00 2.17
932 1035 4.439563 GGATTATTGTTTGGAACGCGGATT 60.440 41.667 12.47 0.00 0.00 3.01
933 1036 3.066203 GGATTATTGTTTGGAACGCGGAT 59.934 43.478 12.47 0.00 0.00 4.18
934 1037 2.420722 GGATTATTGTTTGGAACGCGGA 59.579 45.455 12.47 0.00 0.00 5.54
935 1038 2.478879 GGGATTATTGTTTGGAACGCGG 60.479 50.000 12.47 0.00 0.00 6.46
936 1039 2.162608 TGGGATTATTGTTTGGAACGCG 59.837 45.455 3.53 3.53 0.00 6.01
937 1040 3.057174 TGTGGGATTATTGTTTGGAACGC 60.057 43.478 0.00 0.00 0.00 4.84
938 1041 4.481463 GTGTGGGATTATTGTTTGGAACG 58.519 43.478 0.00 0.00 0.00 3.95
939 1042 4.322424 GGGTGTGGGATTATTGTTTGGAAC 60.322 45.833 0.00 0.00 0.00 3.62
940 1043 3.835395 GGGTGTGGGATTATTGTTTGGAA 59.165 43.478 0.00 0.00 0.00 3.53
941 1044 3.436243 GGGTGTGGGATTATTGTTTGGA 58.564 45.455 0.00 0.00 0.00 3.53
942 1045 2.499693 GGGGTGTGGGATTATTGTTTGG 59.500 50.000 0.00 0.00 0.00 3.28
943 1046 3.056179 GTGGGGTGTGGGATTATTGTTTG 60.056 47.826 0.00 0.00 0.00 2.93
978 1081 2.418197 GGCTACGAATTACTGCTGTCCA 60.418 50.000 0.00 0.00 0.00 4.02
1763 4381 3.385111 CCCAAGCCTACGTAGAAGAAGAT 59.615 47.826 24.15 2.30 0.00 2.40
1771 4391 0.460284 CTGCACCCAAGCCTACGTAG 60.460 60.000 15.92 15.92 0.00 3.51
2071 4881 2.738521 CGCTGTGGGACTGGAACG 60.739 66.667 0.00 0.00 0.00 3.95
2125 4935 1.209747 GAACGGATAGGAAAGCCAGGT 59.790 52.381 0.00 0.00 36.29 4.00
2126 4936 1.486726 AGAACGGATAGGAAAGCCAGG 59.513 52.381 0.00 0.00 36.29 4.45
2128 4938 1.136305 CGAGAACGGATAGGAAAGCCA 59.864 52.381 0.00 0.00 34.34 4.75
2129 4939 1.854227 CGAGAACGGATAGGAAAGCC 58.146 55.000 0.00 0.00 35.72 4.35
2180 4995 0.104487 ATGGCTCTCATCTGCAGACG 59.896 55.000 20.97 11.99 0.00 4.18
2341 5156 9.750125 AAAGTAAGATGAGGTGATTTTTGTTTC 57.250 29.630 0.00 0.00 0.00 2.78
2346 5161 7.288810 TGCAAAGTAAGATGAGGTGATTTTT 57.711 32.000 0.00 0.00 0.00 1.94
2438 5253 2.806745 GCCAGCCAGATATTGCGTCTTA 60.807 50.000 0.00 0.00 0.00 2.10
2444 5259 0.756442 TTGGGCCAGCCAGATATTGC 60.756 55.000 6.23 0.00 37.98 3.56
2466 5282 2.359354 TTGGCGGTGAATGGGTCG 60.359 61.111 0.00 0.00 0.00 4.79
2477 5293 3.248446 TTTCTCCCCTCGTTGGCGG 62.248 63.158 0.00 0.00 38.89 6.13
2497 5313 5.533482 ACTAGCGAATGATAAGGTTAGCTG 58.467 41.667 0.00 0.00 35.23 4.24
2508 5324 3.251245 CGGAGTGAGTACTAGCGAATGAT 59.749 47.826 0.00 0.00 37.25 2.45
2515 5331 5.557891 TTAGAAACGGAGTGAGTACTAGC 57.442 43.478 0.00 0.00 45.00 3.42
2576 5392 7.301868 TCTACAATGCATCTACATACATCCA 57.698 36.000 0.00 0.00 0.00 3.41
2596 5412 8.887717 AGCAAAATGAGTGAATCTACATTCTAC 58.112 33.333 0.00 0.00 39.49 2.59
2601 5417 7.889469 ACAAAGCAAAATGAGTGAATCTACAT 58.111 30.769 0.00 0.00 0.00 2.29
2604 5420 9.013229 ACATACAAAGCAAAATGAGTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
2650 5466 9.387257 CCTCCGTACCTAAATATAAGTTTTTGT 57.613 33.333 0.00 0.00 0.00 2.83
2651 5467 8.833493 CCCTCCGTACCTAAATATAAGTTTTTG 58.167 37.037 0.00 0.00 0.00 2.44
2657 5473 8.641498 TTACTCCCTCCGTACCTAAATATAAG 57.359 38.462 0.00 0.00 0.00 1.73
2667 5483 2.627221 GAGGAATTACTCCCTCCGTACC 59.373 54.545 6.39 0.00 46.81 3.34
2668 5484 3.067883 GTGAGGAATTACTCCCTCCGTAC 59.932 52.174 15.31 0.89 46.81 3.67
2669 5485 3.294214 GTGAGGAATTACTCCCTCCGTA 58.706 50.000 15.31 0.00 46.81 4.02
2705 5521 1.999735 CATTGCATCTTCCGTACGTGT 59.000 47.619 15.21 0.00 0.00 4.49
2743 5560 5.340439 TTTTCCGGTCTGGCTTTTTAAAA 57.660 34.783 0.00 0.00 37.80 1.52
2746 5563 2.295070 GCTTTTCCGGTCTGGCTTTTTA 59.705 45.455 0.00 0.00 37.80 1.52
2751 5568 2.034221 GGCTTTTCCGGTCTGGCT 59.966 61.111 0.00 0.00 37.80 4.75
2791 5609 6.379133 TCGGCATCTCTTTTAAGTCCTAGTAA 59.621 38.462 0.00 0.00 0.00 2.24
2795 5613 4.954202 TCTCGGCATCTCTTTTAAGTCCTA 59.046 41.667 0.00 0.00 0.00 2.94
2820 5638 1.340889 CATCATGGCCATTTTACCCCG 59.659 52.381 17.92 1.73 0.00 5.73
2821 5639 2.676748 TCATCATGGCCATTTTACCCC 58.323 47.619 17.92 0.00 0.00 4.95
2918 5737 4.836825 TCACATGGCAGTTTTTGGAAAAA 58.163 34.783 0.00 0.00 35.67 1.94
2919 5738 4.478206 TCACATGGCAGTTTTTGGAAAA 57.522 36.364 0.00 0.00 0.00 2.29
2920 5739 4.081198 ACTTCACATGGCAGTTTTTGGAAA 60.081 37.500 0.00 0.00 0.00 3.13
2925 5744 5.590530 TTGTACTTCACATGGCAGTTTTT 57.409 34.783 0.00 0.00 36.90 1.94
2950 5769 5.061853 CACATGGCATATTTACAGAGAGCT 58.938 41.667 0.00 0.00 0.00 4.09
2951 5770 4.818546 ACACATGGCATATTTACAGAGAGC 59.181 41.667 0.00 0.00 0.00 4.09
2952 5771 7.212976 ACTACACATGGCATATTTACAGAGAG 58.787 38.462 0.00 0.00 0.00 3.20
2953 5772 7.124573 ACTACACATGGCATATTTACAGAGA 57.875 36.000 0.00 0.00 0.00 3.10
2954 5773 8.887036 TTACTACACATGGCATATTTACAGAG 57.113 34.615 0.00 0.00 0.00 3.35
2955 5774 8.482943 ACTTACTACACATGGCATATTTACAGA 58.517 33.333 0.00 0.00 0.00 3.41
2956 5775 8.662781 ACTTACTACACATGGCATATTTACAG 57.337 34.615 0.00 0.00 0.00 2.74
2957 5776 9.537192 GTACTTACTACACATGGCATATTTACA 57.463 33.333 0.00 0.00 0.00 2.41
2958 5777 9.537192 TGTACTTACTACACATGGCATATTTAC 57.463 33.333 0.00 0.00 29.73 2.01
2960 5779 9.456147 TTTGTACTTACTACACATGGCATATTT 57.544 29.630 0.00 0.00 34.91 1.40
2961 5780 9.627123 ATTTGTACTTACTACACATGGCATATT 57.373 29.630 0.00 0.00 34.91 1.28
2962 5781 9.627123 AATTTGTACTTACTACACATGGCATAT 57.373 29.630 0.00 0.00 34.91 1.78
2963 5782 9.104965 GAATTTGTACTTACTACACATGGCATA 57.895 33.333 0.00 0.00 34.91 3.14
2964 5783 7.067008 GGAATTTGTACTTACTACACATGGCAT 59.933 37.037 0.00 0.00 34.91 4.40
2965 5784 6.373216 GGAATTTGTACTTACTACACATGGCA 59.627 38.462 0.00 0.00 34.91 4.92
2966 5785 6.456449 CGGAATTTGTACTTACTACACATGGC 60.456 42.308 0.00 0.00 34.91 4.40
2967 5786 6.814644 TCGGAATTTGTACTTACTACACATGG 59.185 38.462 0.00 0.00 34.91 3.66
2968 5787 7.821595 TCGGAATTTGTACTTACTACACATG 57.178 36.000 0.00 0.00 34.91 3.21
2969 5788 8.836268 TTTCGGAATTTGTACTTACTACACAT 57.164 30.769 0.00 0.00 34.91 3.21
2970 5789 8.659925 TTTTCGGAATTTGTACTTACTACACA 57.340 30.769 0.00 0.00 34.91 3.72
2973 5792 9.550811 CCATTTTTCGGAATTTGTACTTACTAC 57.449 33.333 0.00 0.00 0.00 2.73
2974 5793 8.238631 GCCATTTTTCGGAATTTGTACTTACTA 58.761 33.333 0.00 0.00 0.00 1.82
2975 5794 7.088272 GCCATTTTTCGGAATTTGTACTTACT 58.912 34.615 0.00 0.00 0.00 2.24
2976 5795 6.864165 TGCCATTTTTCGGAATTTGTACTTAC 59.136 34.615 0.00 0.00 0.00 2.34
2977 5796 6.982852 TGCCATTTTTCGGAATTTGTACTTA 58.017 32.000 0.00 0.00 0.00 2.24
2978 5797 5.848406 TGCCATTTTTCGGAATTTGTACTT 58.152 33.333 0.00 0.00 0.00 2.24
2979 5798 5.461032 TGCCATTTTTCGGAATTTGTACT 57.539 34.783 0.00 0.00 0.00 2.73
2980 5799 5.866633 TCATGCCATTTTTCGGAATTTGTAC 59.133 36.000 0.00 0.00 0.00 2.90
2981 5800 6.030548 TCATGCCATTTTTCGGAATTTGTA 57.969 33.333 0.00 0.00 0.00 2.41
2982 5801 4.892433 TCATGCCATTTTTCGGAATTTGT 58.108 34.783 0.00 0.00 0.00 2.83
2983 5802 5.170021 TCTCATGCCATTTTTCGGAATTTG 58.830 37.500 0.00 0.00 0.00 2.32
2984 5803 5.404466 TCTCATGCCATTTTTCGGAATTT 57.596 34.783 0.00 0.00 0.00 1.82
2985 5804 5.047092 AGTTCTCATGCCATTTTTCGGAATT 60.047 36.000 0.00 0.00 0.00 2.17
2986 5805 4.463891 AGTTCTCATGCCATTTTTCGGAAT 59.536 37.500 0.00 0.00 0.00 3.01
2987 5806 3.826157 AGTTCTCATGCCATTTTTCGGAA 59.174 39.130 0.00 0.00 0.00 4.30
2988 5807 3.420893 AGTTCTCATGCCATTTTTCGGA 58.579 40.909 0.00 0.00 0.00 4.55
2999 5818 7.308435 ACTTTTGCACTTATTAGTTCTCATGC 58.692 34.615 0.00 0.00 30.26 4.06
3072 5891 9.995003 AGAAAATGTTCTATTACATGGCAAAAA 57.005 25.926 0.00 0.00 42.53 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.