Multiple sequence alignment - TraesCS5D01G370700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G370700 chr5D 100.000 2837 0 0 1 2837 445383733 445380897 0.000000e+00 5240.0
1 TraesCS5D01G370700 chr5B 93.481 1534 81 8 539 2055 542987192 542985661 0.000000e+00 2261.0
2 TraesCS5D01G370700 chr5B 88.866 485 23 11 72 552 542987754 542987297 4.100000e-158 568.0
3 TraesCS5D01G370700 chr5B 85.326 184 16 6 2119 2301 542985492 542985319 2.250000e-41 180.0
4 TraesCS5D01G370700 chr5B 76.498 217 34 9 2538 2743 542984883 542984673 5.000000e-18 102.0
5 TraesCS5D01G370700 chr5B 88.889 72 4 3 1040 1107 681044038 681044109 5.040000e-13 86.1
6 TraesCS5D01G370700 chr3D 81.623 1257 191 25 999 2241 597398064 597399294 0.000000e+00 1005.0
7 TraesCS5D01G370700 chr4B 82.126 1091 173 13 999 2074 650601682 650600599 0.000000e+00 915.0
8 TraesCS5D01G370700 chr4A 81.975 1104 176 9 999 2083 729114054 729115153 0.000000e+00 915.0
9 TraesCS5D01G370700 chr4A 81.471 1101 173 19 1005 2083 728728981 728727890 0.000000e+00 874.0
10 TraesCS5D01G370700 chr5A 90.818 697 40 12 72 754 563006419 563005733 0.000000e+00 911.0
11 TraesCS5D01G370700 chr5A 82.016 1101 165 21 999 2074 688666231 688665139 0.000000e+00 905.0
12 TraesCS5D01G370700 chr5A 91.883 579 41 3 769 1346 562999816 562999243 0.000000e+00 804.0
13 TraesCS5D01G370700 chr5A 93.519 540 29 2 1351 1885 562999154 562998616 0.000000e+00 798.0
14 TraesCS5D01G370700 chr5A 91.115 529 34 10 1883 2408 562996181 562995663 0.000000e+00 704.0
15 TraesCS5D01G370700 chr4D 85.132 491 63 6 1584 2067 504068721 504068234 7.060000e-136 494.0
16 TraesCS5D01G370700 chr4D 77.469 648 109 24 999 1617 503967877 503967238 1.250000e-93 353.0
17 TraesCS5D01G370700 chr2B 75.174 431 89 12 1483 1900 692129039 692129464 1.340000e-43 187.0
18 TraesCS5D01G370700 chr2D 72.250 591 141 15 1475 2047 575831697 575832282 8.130000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G370700 chr5D 445380897 445383733 2836 True 5240.000000 5240 100.000000 1 2837 1 chr5D.!!$R1 2836
1 TraesCS5D01G370700 chr5B 542984673 542987754 3081 True 777.750000 2261 86.042750 72 2743 4 chr5B.!!$R1 2671
2 TraesCS5D01G370700 chr3D 597398064 597399294 1230 False 1005.000000 1005 81.623000 999 2241 1 chr3D.!!$F1 1242
3 TraesCS5D01G370700 chr4B 650600599 650601682 1083 True 915.000000 915 82.126000 999 2074 1 chr4B.!!$R1 1075
4 TraesCS5D01G370700 chr4A 729114054 729115153 1099 False 915.000000 915 81.975000 999 2083 1 chr4A.!!$F1 1084
5 TraesCS5D01G370700 chr4A 728727890 728728981 1091 True 874.000000 874 81.471000 1005 2083 1 chr4A.!!$R1 1078
6 TraesCS5D01G370700 chr5A 563005733 563006419 686 True 911.000000 911 90.818000 72 754 1 chr5A.!!$R1 682
7 TraesCS5D01G370700 chr5A 688665139 688666231 1092 True 905.000000 905 82.016000 999 2074 1 chr5A.!!$R2 1075
8 TraesCS5D01G370700 chr5A 562995663 562999816 4153 True 768.666667 804 92.172333 769 2408 3 chr5A.!!$R3 1639
9 TraesCS5D01G370700 chr4D 503967238 503967877 639 True 353.000000 353 77.469000 999 1617 1 chr4D.!!$R1 618


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.110238 CCCATGACAAAACAGTCGCG 60.110 55.0 0.0 0.0 41.41 5.87 F
1377 1627 0.035343 GTACTTGGGGCTGGGAGAAC 60.035 60.0 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1414 1664 0.867746 GTGAAGCAGTCGTCATTGCA 59.132 50.0 0.0 0.0 42.67 4.08 R
2519 5504 0.044855 AGAGACCCCCAACCTAGCAT 59.955 55.0 0.0 0.0 0.00 3.79 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.798596 AAGAACTATACGAATACCTTCTCGA 57.201 36.000 0.00 0.00 38.43 4.04
26 27 7.798596 AGAACTATACGAATACCTTCTCGAA 57.201 36.000 0.00 0.00 38.43 3.71
27 28 7.863666 AGAACTATACGAATACCTTCTCGAAG 58.136 38.462 0.00 0.00 38.43 3.79
28 29 7.714377 AGAACTATACGAATACCTTCTCGAAGA 59.286 37.037 8.19 0.00 40.79 2.87
29 30 7.798596 ACTATACGAATACCTTCTCGAAGAA 57.201 36.000 8.19 0.00 40.79 2.52
30 31 8.218338 ACTATACGAATACCTTCTCGAAGAAA 57.782 34.615 8.19 0.00 40.79 2.52
31 32 8.127954 ACTATACGAATACCTTCTCGAAGAAAC 58.872 37.037 8.19 0.00 40.79 2.78
32 33 5.388408 ACGAATACCTTCTCGAAGAAACT 57.612 39.130 8.19 0.00 40.79 2.66
33 34 5.162075 ACGAATACCTTCTCGAAGAAACTG 58.838 41.667 8.19 0.00 40.79 3.16
34 35 5.162075 CGAATACCTTCTCGAAGAAACTGT 58.838 41.667 8.19 0.48 40.79 3.55
35 36 6.072286 ACGAATACCTTCTCGAAGAAACTGTA 60.072 38.462 8.19 2.53 40.79 2.74
36 37 6.469595 CGAATACCTTCTCGAAGAAACTGTAG 59.530 42.308 8.19 0.00 40.79 2.74
37 38 4.522722 ACCTTCTCGAAGAAACTGTAGG 57.477 45.455 8.19 0.00 40.79 3.18
38 39 3.896272 ACCTTCTCGAAGAAACTGTAGGT 59.104 43.478 8.19 0.00 40.79 3.08
39 40 5.075493 ACCTTCTCGAAGAAACTGTAGGTA 58.925 41.667 8.19 0.00 40.79 3.08
40 41 5.715753 ACCTTCTCGAAGAAACTGTAGGTAT 59.284 40.000 8.19 0.00 40.79 2.73
41 42 6.210984 ACCTTCTCGAAGAAACTGTAGGTATT 59.789 38.462 8.19 0.00 40.79 1.89
42 43 6.752815 CCTTCTCGAAGAAACTGTAGGTATTC 59.247 42.308 8.19 0.00 40.79 1.75
43 44 6.829229 TCTCGAAGAAACTGTAGGTATTCA 57.171 37.500 0.00 0.00 34.09 2.57
44 45 6.853720 TCTCGAAGAAACTGTAGGTATTCAG 58.146 40.000 0.00 0.00 34.09 3.02
45 46 5.408356 TCGAAGAAACTGTAGGTATTCAGC 58.592 41.667 0.00 0.00 35.37 4.26
46 47 4.567159 CGAAGAAACTGTAGGTATTCAGCC 59.433 45.833 0.00 0.00 35.37 4.85
47 48 4.489306 AGAAACTGTAGGTATTCAGCCC 57.511 45.455 0.00 0.00 35.37 5.19
48 49 3.844211 AGAAACTGTAGGTATTCAGCCCA 59.156 43.478 0.00 0.00 35.37 5.36
49 50 4.475016 AGAAACTGTAGGTATTCAGCCCAT 59.525 41.667 0.00 0.00 35.37 4.00
50 51 3.845781 ACTGTAGGTATTCAGCCCATG 57.154 47.619 0.00 0.00 35.37 3.66
51 52 3.384168 ACTGTAGGTATTCAGCCCATGA 58.616 45.455 0.00 0.00 35.37 3.07
52 53 3.134804 ACTGTAGGTATTCAGCCCATGAC 59.865 47.826 0.00 0.00 37.77 3.06
53 54 3.111484 TGTAGGTATTCAGCCCATGACA 58.889 45.455 0.00 0.00 37.77 3.58
54 55 3.521531 TGTAGGTATTCAGCCCATGACAA 59.478 43.478 0.00 0.00 37.77 3.18
55 56 3.737559 AGGTATTCAGCCCATGACAAA 57.262 42.857 0.00 0.00 37.77 2.83
56 57 4.046286 AGGTATTCAGCCCATGACAAAA 57.954 40.909 0.00 0.00 37.77 2.44
57 58 3.763897 AGGTATTCAGCCCATGACAAAAC 59.236 43.478 0.00 0.00 37.77 2.43
58 59 3.509575 GGTATTCAGCCCATGACAAAACA 59.490 43.478 0.00 0.00 37.77 2.83
59 60 3.947910 ATTCAGCCCATGACAAAACAG 57.052 42.857 0.00 0.00 37.77 3.16
60 61 2.363306 TCAGCCCATGACAAAACAGT 57.637 45.000 0.00 0.00 31.12 3.55
61 62 2.229792 TCAGCCCATGACAAAACAGTC 58.770 47.619 0.00 0.00 38.99 3.51
62 63 1.069022 CAGCCCATGACAAAACAGTCG 60.069 52.381 0.00 0.00 41.41 4.18
63 64 0.387239 GCCCATGACAAAACAGTCGC 60.387 55.000 0.00 0.00 41.41 5.19
64 65 0.110238 CCCATGACAAAACAGTCGCG 60.110 55.000 0.00 0.00 41.41 5.87
65 66 0.586319 CCATGACAAAACAGTCGCGT 59.414 50.000 5.77 0.00 41.41 6.01
66 67 1.660052 CCATGACAAAACAGTCGCGTG 60.660 52.381 5.77 0.00 41.41 5.34
67 68 0.586319 ATGACAAAACAGTCGCGTGG 59.414 50.000 5.77 0.00 41.41 4.94
68 69 1.278637 GACAAAACAGTCGCGTGGG 59.721 57.895 5.77 0.00 0.00 4.61
69 70 1.153329 ACAAAACAGTCGCGTGGGA 60.153 52.632 5.77 0.00 0.00 4.37
70 71 1.157870 ACAAAACAGTCGCGTGGGAG 61.158 55.000 5.77 0.00 0.00 4.30
184 185 1.519455 GAATCACCTCGTCGGCCAG 60.519 63.158 2.24 0.00 35.61 4.85
232 233 3.213402 CTCTCCTCCGTCCGCTCC 61.213 72.222 0.00 0.00 0.00 4.70
263 266 2.203832 TCTGCTCTCACCTGCCCA 60.204 61.111 0.00 0.00 0.00 5.36
413 425 1.001378 CTGGTTTTCCTTGGCTTCGTG 60.001 52.381 0.00 0.00 41.38 4.35
414 426 0.313987 GGTTTTCCTTGGCTTCGTGG 59.686 55.000 0.00 0.00 36.94 4.94
415 427 1.029681 GTTTTCCTTGGCTTCGTGGT 58.970 50.000 0.00 0.00 0.00 4.16
416 428 2.223745 GTTTTCCTTGGCTTCGTGGTA 58.776 47.619 0.00 0.00 0.00 3.25
417 429 1.886886 TTTCCTTGGCTTCGTGGTAC 58.113 50.000 0.00 0.00 0.00 3.34
418 430 1.053424 TTCCTTGGCTTCGTGGTACT 58.947 50.000 0.00 0.00 0.00 2.73
479 491 8.737168 AGCAGTACTATGATATGCAAGAAAAA 57.263 30.769 0.00 0.00 39.34 1.94
517 534 1.346479 TTTTCCTGGTCCGGTGGTGA 61.346 55.000 0.00 0.00 0.00 4.02
573 708 0.881796 CGGTTCCCCTTTTCTTCTGC 59.118 55.000 0.00 0.00 0.00 4.26
574 709 1.545651 CGGTTCCCCTTTTCTTCTGCT 60.546 52.381 0.00 0.00 0.00 4.24
580 715 3.515901 TCCCCTTTTCTTCTGCTAGTCTC 59.484 47.826 0.00 0.00 0.00 3.36
678 819 4.201910 CCAAGTGTTTCGCTTACCCATATG 60.202 45.833 0.00 0.00 32.60 1.78
714 855 4.264253 ACTTCCTTCGCATGAATCATTCA 58.736 39.130 1.59 1.59 45.01 2.57
720 861 4.556942 TCGCATGAATCATTCAATGACC 57.443 40.909 3.63 0.00 43.95 4.02
730 871 9.300681 TGAATCATTCAATGACCTACTTTCTTT 57.699 29.630 0.98 0.00 43.01 2.52
739 880 9.667107 CAATGACCTACTTTCTTTGATTAGGTA 57.333 33.333 0.00 0.00 42.15 3.08
784 926 2.125106 CACTCCCAGGTTAGCGCC 60.125 66.667 2.29 0.00 0.00 6.53
785 927 2.606519 ACTCCCAGGTTAGCGCCA 60.607 61.111 2.29 0.00 0.00 5.69
852 994 6.999950 TGCTAAAAGTATTGGTCAGTACTCA 58.000 36.000 6.61 0.00 33.49 3.41
897 1043 2.685388 TGGATGCTTGTTGAACGTGAAA 59.315 40.909 0.00 0.00 0.00 2.69
959 1105 7.923878 ACACATTGAGTATATATGCACGTACAA 59.076 33.333 3.52 2.81 0.00 2.41
974 1120 4.327357 CACGTACAAGAGCATTCAGGTTAG 59.673 45.833 0.00 0.00 0.00 2.34
996 1142 1.199097 GCAACACCCATAACTTCCGTG 59.801 52.381 0.00 0.00 0.00 4.94
997 1143 2.500229 CAACACCCATAACTTCCGTGT 58.500 47.619 0.00 0.00 39.27 4.49
1161 1307 7.889469 AGTTCATTAGCTCAAACACATTCAAT 58.111 30.769 0.00 0.00 0.00 2.57
1214 1360 2.130193 TCCTGATGGATTGAAGGAGGG 58.870 52.381 0.00 0.00 37.46 4.30
1220 1369 3.199442 TGGATTGAAGGAGGGTACAGA 57.801 47.619 0.00 0.00 0.00 3.41
1377 1627 0.035343 GTACTTGGGGCTGGGAGAAC 60.035 60.000 0.00 0.00 0.00 3.01
1385 1635 1.751351 GGGCTGGGAGAACTTTATTGC 59.249 52.381 0.00 0.00 0.00 3.56
1390 1640 3.745799 TGGGAGAACTTTATTGCGAACA 58.254 40.909 0.00 0.00 0.00 3.18
1391 1641 4.138290 TGGGAGAACTTTATTGCGAACAA 58.862 39.130 0.00 0.00 40.87 2.83
1395 1645 5.974751 GGAGAACTTTATTGCGAACAACAAA 59.025 36.000 0.00 0.00 38.99 2.83
1413 1663 6.998673 ACAACAAACTTAAGGAACTGCTATCT 59.001 34.615 7.53 0.00 40.86 1.98
1414 1664 7.502561 ACAACAAACTTAAGGAACTGCTATCTT 59.497 33.333 7.53 0.00 40.86 2.40
1651 1905 1.302832 AAGGCCGAGCTCTTTGGTG 60.303 57.895 12.85 0.00 32.26 4.17
1806 2060 1.008538 CTTGTTGGTTGCCGCAGAC 60.009 57.895 0.00 0.00 0.00 3.51
1850 2109 4.701956 ATTTGTGAAGGGAAACTATGCG 57.298 40.909 0.00 0.00 0.00 4.73
1954 4650 4.168101 TCAGATACCTTTCTTCACAGGGT 58.832 43.478 0.00 0.00 34.02 4.34
1999 4695 2.743664 TGATGAATTCAAGCACCTCACG 59.256 45.455 13.09 0.00 0.00 4.35
2099 4930 6.273825 AGTATTTAGCAGTATCCGACTTGTG 58.726 40.000 0.00 0.00 35.64 3.33
2101 4932 0.608130 AGCAGTATCCGACTTGTGCA 59.392 50.000 0.00 0.00 35.64 4.57
2133 4964 5.802956 GCTGTCAAGTGTGAAGATCTAGTAC 59.197 44.000 0.00 0.00 34.87 2.73
2136 4967 8.270080 TGTCAAGTGTGAAGATCTAGTACTAG 57.730 38.462 21.87 21.87 34.87 2.57
2139 4970 9.381033 TCAAGTGTGAAGATCTAGTACTAGTAC 57.619 37.037 25.58 23.03 34.84 2.73
2141 4972 9.603921 AAGTGTGAAGATCTAGTACTAGTACTC 57.396 37.037 33.47 21.36 44.58 2.59
2190 5039 6.929606 GTGTATCCACTGTAAGACTGAACTTT 59.070 38.462 0.00 0.00 38.61 2.66
2246 5095 8.947115 ACTTATTGGCACTGAAAATTCTACTAC 58.053 33.333 0.00 0.00 0.00 2.73
2249 5098 8.723942 ATTGGCACTGAAAATTCTACTACTAG 57.276 34.615 0.00 0.00 0.00 2.57
2300 5150 5.358160 GGCTTATTGGCACTGAAAATCTACT 59.642 40.000 0.00 0.00 41.37 2.57
2388 5327 3.206150 CAGTTACAAGGTGCACAGAACT 58.794 45.455 20.43 15.53 0.00 3.01
2405 5361 4.331168 CAGAACTACAAGAGGCTAATGTGC 59.669 45.833 13.29 2.87 0.00 4.57
2413 5369 4.399004 AGAGGCTAATGTGCTACTTCTG 57.601 45.455 0.00 0.00 0.00 3.02
2414 5370 3.772025 AGAGGCTAATGTGCTACTTCTGT 59.228 43.478 0.00 0.00 0.00 3.41
2421 5377 7.040340 GGCTAATGTGCTACTTCTGTATAGAGA 60.040 40.741 0.00 0.00 33.70 3.10
2422 5378 8.020819 GCTAATGTGCTACTTCTGTATAGAGAG 58.979 40.741 0.00 0.00 33.70 3.20
2423 5379 6.892658 ATGTGCTACTTCTGTATAGAGAGG 57.107 41.667 7.39 7.39 33.70 3.69
2424 5380 5.133941 TGTGCTACTTCTGTATAGAGAGGG 58.866 45.833 12.78 7.06 33.70 4.30
2425 5381 4.022676 GTGCTACTTCTGTATAGAGAGGGC 60.023 50.000 12.78 8.19 33.70 5.19
2426 5382 3.508402 GCTACTTCTGTATAGAGAGGGCC 59.492 52.174 12.78 0.00 33.70 5.80
2454 5410 3.252701 CCAGATGCTGATGTTATTGAGCC 59.747 47.826 0.00 0.00 32.44 4.70
2455 5411 3.059120 CAGATGCTGATGTTATTGAGCCG 60.059 47.826 0.00 0.00 32.44 5.52
2457 5413 1.209261 TGCTGATGTTATTGAGCCGGA 59.791 47.619 5.05 0.00 0.00 5.14
2458 5414 1.869767 GCTGATGTTATTGAGCCGGAG 59.130 52.381 5.05 0.00 0.00 4.63
2459 5415 2.743183 GCTGATGTTATTGAGCCGGAGT 60.743 50.000 5.05 0.00 0.00 3.85
2461 5417 2.128035 GATGTTATTGAGCCGGAGTCG 58.872 52.381 5.05 0.00 0.00 4.18
2462 5418 0.459585 TGTTATTGAGCCGGAGTCGC 60.460 55.000 5.05 0.00 34.56 5.19
2464 5420 0.535335 TTATTGAGCCGGAGTCGCTT 59.465 50.000 5.05 0.00 34.56 4.68
2465 5421 0.179111 TATTGAGCCGGAGTCGCTTG 60.179 55.000 5.05 0.00 34.56 4.01
2466 5422 1.888436 ATTGAGCCGGAGTCGCTTGA 61.888 55.000 5.05 0.00 34.56 3.02
2467 5423 2.094757 TTGAGCCGGAGTCGCTTGAA 62.095 55.000 5.05 0.00 34.56 2.69
2468 5424 2.048127 AGCCGGAGTCGCTTGAAC 60.048 61.111 5.05 0.00 34.56 3.18
2481 5466 2.614057 CGCTTGAACATCTGATTACCCC 59.386 50.000 0.00 0.00 0.00 4.95
2483 5468 3.873910 CTTGAACATCTGATTACCCCGT 58.126 45.455 0.00 0.00 0.00 5.28
2487 5472 3.543680 ACATCTGATTACCCCGTTGAG 57.456 47.619 0.00 0.00 0.00 3.02
2490 5475 3.104519 TCTGATTACCCCGTTGAGGTA 57.895 47.619 0.00 0.00 38.89 3.08
2493 5478 2.436542 TGATTACCCCGTTGAGGTATGG 59.563 50.000 0.00 0.00 39.58 2.74
2494 5479 2.250921 TTACCCCGTTGAGGTATGGA 57.749 50.000 0.00 0.00 39.58 3.41
2497 5482 0.535102 CCCCGTTGAGGTATGGATGC 60.535 60.000 0.00 0.00 38.74 3.91
2500 5485 1.202806 CCGTTGAGGTATGGATGCCAT 60.203 52.381 4.18 4.18 46.99 4.40
2501 5486 2.575532 CGTTGAGGTATGGATGCCATT 58.424 47.619 4.03 0.00 42.23 3.16
2502 5487 2.951642 CGTTGAGGTATGGATGCCATTT 59.048 45.455 4.03 0.00 42.23 2.32
2503 5488 3.003689 CGTTGAGGTATGGATGCCATTTC 59.996 47.826 4.03 2.14 42.23 2.17
2504 5489 4.210331 GTTGAGGTATGGATGCCATTTCT 58.790 43.478 4.03 3.04 42.23 2.52
2505 5490 4.090761 TGAGGTATGGATGCCATTTCTC 57.909 45.455 4.03 11.54 42.23 2.87
2506 5491 3.181440 TGAGGTATGGATGCCATTTCTCC 60.181 47.826 17.81 11.04 42.23 3.71
2507 5492 2.108952 AGGTATGGATGCCATTTCTCCC 59.891 50.000 4.03 0.00 42.23 4.30
2508 5493 2.154462 GTATGGATGCCATTTCTCCCG 58.846 52.381 4.03 0.00 42.23 5.14
2509 5494 0.552848 ATGGATGCCATTTCTCCCGT 59.447 50.000 0.00 0.00 42.23 5.28
2510 5495 0.394216 TGGATGCCATTTCTCCCGTG 60.394 55.000 0.00 0.00 0.00 4.94
2511 5496 0.394352 GGATGCCATTTCTCCCGTGT 60.394 55.000 0.00 0.00 0.00 4.49
2512 5497 1.463674 GATGCCATTTCTCCCGTGTT 58.536 50.000 0.00 0.00 0.00 3.32
2514 5499 0.958091 TGCCATTTCTCCCGTGTTTG 59.042 50.000 0.00 0.00 0.00 2.93
2515 5500 1.243902 GCCATTTCTCCCGTGTTTGA 58.756 50.000 0.00 0.00 0.00 2.69
2516 5501 1.068541 GCCATTTCTCCCGTGTTTGAC 60.069 52.381 0.00 0.00 0.00 3.18
2518 5503 2.226437 CCATTTCTCCCGTGTTTGACAG 59.774 50.000 0.00 0.00 0.00 3.51
2519 5504 2.992124 TTTCTCCCGTGTTTGACAGA 57.008 45.000 0.00 0.00 0.00 3.41
2520 5505 3.485463 TTTCTCCCGTGTTTGACAGAT 57.515 42.857 0.00 0.00 0.00 2.90
2523 5508 0.396435 TCCCGTGTTTGACAGATGCT 59.604 50.000 0.00 0.00 0.00 3.79
2524 5509 1.621317 TCCCGTGTTTGACAGATGCTA 59.379 47.619 0.00 0.00 0.00 3.49
2525 5510 2.002586 CCCGTGTTTGACAGATGCTAG 58.997 52.381 0.00 0.00 0.00 3.42
2526 5511 2.002586 CCGTGTTTGACAGATGCTAGG 58.997 52.381 0.00 0.00 0.00 3.02
2527 5512 2.612972 CCGTGTTTGACAGATGCTAGGT 60.613 50.000 0.00 0.00 0.00 3.08
2530 5515 3.189287 GTGTTTGACAGATGCTAGGTTGG 59.811 47.826 0.00 0.00 0.00 3.77
2531 5516 2.749621 GTTTGACAGATGCTAGGTTGGG 59.250 50.000 0.00 0.00 0.00 4.12
2532 5517 0.911769 TGACAGATGCTAGGTTGGGG 59.088 55.000 0.00 0.00 0.00 4.96
2535 5520 0.181350 CAGATGCTAGGTTGGGGGTC 59.819 60.000 0.00 0.00 0.00 4.46
2565 5621 4.492791 TGTGTTTGACAGATGATGCTTG 57.507 40.909 0.00 0.00 0.00 4.01
2566 5622 3.884693 TGTGTTTGACAGATGATGCTTGT 59.115 39.130 0.00 0.00 0.00 3.16
2567 5623 4.224433 GTGTTTGACAGATGATGCTTGTG 58.776 43.478 0.00 0.00 0.00 3.33
2568 5624 3.884693 TGTTTGACAGATGATGCTTGTGT 59.115 39.130 0.00 0.00 0.00 3.72
2578 5634 2.300433 GATGCTTGTGTATGGATGCCA 58.700 47.619 0.00 0.00 38.19 4.92
2582 5638 3.130869 TGCTTGTGTATGGATGCCATTTC 59.869 43.478 4.03 0.18 42.23 2.17
2584 5640 4.735578 GCTTGTGTATGGATGCCATTTCTG 60.736 45.833 4.03 0.00 42.23 3.02
2592 5648 0.527565 ATGCCATTTCTGCCGTGTTC 59.472 50.000 0.00 0.00 0.00 3.18
2593 5649 0.537143 TGCCATTTCTGCCGTGTTCT 60.537 50.000 0.00 0.00 0.00 3.01
2605 5661 0.234884 CGTGTTCTCGGCTTTCAACC 59.765 55.000 0.00 0.00 0.00 3.77
2606 5662 1.594331 GTGTTCTCGGCTTTCAACCT 58.406 50.000 0.00 0.00 0.00 3.50
2623 5679 5.701029 CAACCTTAGTTGTTGTTTGCTTG 57.299 39.130 0.00 0.00 46.88 4.01
2624 5680 4.385358 ACCTTAGTTGTTGTTTGCTTGG 57.615 40.909 0.00 0.00 0.00 3.61
2625 5681 3.767131 ACCTTAGTTGTTGTTTGCTTGGT 59.233 39.130 0.00 0.00 0.00 3.67
2626 5682 4.221924 ACCTTAGTTGTTGTTTGCTTGGTT 59.778 37.500 0.00 0.00 0.00 3.67
2627 5683 5.419471 ACCTTAGTTGTTGTTTGCTTGGTTA 59.581 36.000 0.00 0.00 0.00 2.85
2635 5691 8.699749 GTTGTTGTTTGCTTGGTTATTATCTTC 58.300 33.333 0.00 0.00 0.00 2.87
2643 5699 6.706270 TGCTTGGTTATTATCTTCGGAAGATC 59.294 38.462 30.77 18.49 44.79 2.75
2645 5701 7.095439 GCTTGGTTATTATCTTCGGAAGATCTG 60.095 40.741 30.77 15.61 44.79 2.90
2646 5702 7.361457 TGGTTATTATCTTCGGAAGATCTGT 57.639 36.000 30.77 20.94 44.79 3.41
2647 5703 7.434492 TGGTTATTATCTTCGGAAGATCTGTC 58.566 38.462 30.77 19.30 44.79 3.51
2648 5704 7.069455 TGGTTATTATCTTCGGAAGATCTGTCA 59.931 37.037 30.77 20.26 44.79 3.58
2654 5710 4.931601 TCTTCGGAAGATCTGTCATGTTTG 59.068 41.667 16.19 0.00 41.60 2.93
2655 5711 4.271696 TCGGAAGATCTGTCATGTTTGT 57.728 40.909 0.00 0.00 33.31 2.83
2656 5712 5.400066 TCGGAAGATCTGTCATGTTTGTA 57.600 39.130 0.00 0.00 33.31 2.41
2657 5713 5.168569 TCGGAAGATCTGTCATGTTTGTAC 58.831 41.667 0.00 0.00 33.31 2.90
2659 5715 5.289675 CGGAAGATCTGTCATGTTTGTACTC 59.710 44.000 0.00 0.00 0.00 2.59
2660 5716 5.289675 GGAAGATCTGTCATGTTTGTACTCG 59.710 44.000 0.00 0.00 0.00 4.18
2669 5730 4.636648 TCATGTTTGTACTCGTGGTGTTTT 59.363 37.500 0.00 0.00 0.00 2.43
2670 5731 5.124138 TCATGTTTGTACTCGTGGTGTTTTT 59.876 36.000 0.00 0.00 0.00 1.94
2674 5735 1.528161 GTACTCGTGGTGTTTTTCGGG 59.472 52.381 0.00 0.00 0.00 5.14
2678 5739 1.066752 GTGGTGTTTTTCGGGGTGC 59.933 57.895 0.00 0.00 0.00 5.01
2684 5745 0.596577 GTTTTTCGGGGTGCTTCTCC 59.403 55.000 0.00 0.00 0.00 3.71
2691 5752 0.606673 GGGGTGCTTCTCCAGTGTTC 60.607 60.000 0.00 0.00 36.51 3.18
2692 5753 0.606673 GGGTGCTTCTCCAGTGTTCC 60.607 60.000 0.00 0.00 0.00 3.62
2695 5756 0.250467 TGCTTCTCCAGTGTTCCTGC 60.250 55.000 0.00 0.00 40.06 4.85
2700 5761 1.345741 TCTCCAGTGTTCCTGCTCTTG 59.654 52.381 0.00 0.00 40.06 3.02
2712 5776 3.091545 CCTGCTCTTGGCCTGAATAAAA 58.908 45.455 3.32 0.00 40.92 1.52
2713 5777 3.511146 CCTGCTCTTGGCCTGAATAAAAA 59.489 43.478 3.32 0.00 40.92 1.94
2743 5807 8.492748 CGTGTAATGTGTGTATGTTTCTTACTT 58.507 33.333 0.00 0.00 0.00 2.24
2744 5808 9.594038 GTGTAATGTGTGTATGTTTCTTACTTG 57.406 33.333 0.00 0.00 0.00 3.16
2745 5809 8.286800 TGTAATGTGTGTATGTTTCTTACTTGC 58.713 33.333 0.00 0.00 0.00 4.01
2746 5810 6.875948 ATGTGTGTATGTTTCTTACTTGCA 57.124 33.333 0.00 0.00 0.00 4.08
2747 5811 6.299023 TGTGTGTATGTTTCTTACTTGCAG 57.701 37.500 0.00 0.00 29.46 4.41
2748 5812 5.820423 TGTGTGTATGTTTCTTACTTGCAGT 59.180 36.000 0.00 0.00 29.46 4.40
2749 5813 6.317642 TGTGTGTATGTTTCTTACTTGCAGTT 59.682 34.615 0.00 0.00 29.46 3.16
2750 5814 6.632834 GTGTGTATGTTTCTTACTTGCAGTTG 59.367 38.462 0.00 0.00 29.46 3.16
2751 5815 6.540551 TGTGTATGTTTCTTACTTGCAGTTGA 59.459 34.615 0.00 0.00 29.46 3.18
2752 5816 7.228507 TGTGTATGTTTCTTACTTGCAGTTGAT 59.771 33.333 0.00 0.00 29.46 2.57
2753 5817 8.717821 GTGTATGTTTCTTACTTGCAGTTGATA 58.282 33.333 0.00 0.00 29.46 2.15
2754 5818 8.717821 TGTATGTTTCTTACTTGCAGTTGATAC 58.282 33.333 0.00 0.00 0.00 2.24
2755 5819 6.554334 TGTTTCTTACTTGCAGTTGATACC 57.446 37.500 0.00 0.00 0.00 2.73
2756 5820 5.472137 TGTTTCTTACTTGCAGTTGATACCC 59.528 40.000 0.00 0.00 0.00 3.69
2757 5821 4.901197 TCTTACTTGCAGTTGATACCCA 57.099 40.909 0.00 0.00 0.00 4.51
2758 5822 5.235850 TCTTACTTGCAGTTGATACCCAA 57.764 39.130 0.00 0.00 0.00 4.12
2759 5823 5.626142 TCTTACTTGCAGTTGATACCCAAA 58.374 37.500 0.00 0.00 36.36 3.28
2760 5824 6.065374 TCTTACTTGCAGTTGATACCCAAAA 58.935 36.000 0.00 0.00 36.36 2.44
2761 5825 6.547880 TCTTACTTGCAGTTGATACCCAAAAA 59.452 34.615 0.00 0.00 36.36 1.94
2762 5826 5.200368 ACTTGCAGTTGATACCCAAAAAG 57.800 39.130 0.00 0.00 36.36 2.27
2763 5827 4.039124 ACTTGCAGTTGATACCCAAAAAGG 59.961 41.667 0.00 0.00 36.36 3.11
2764 5828 3.838565 TGCAGTTGATACCCAAAAAGGA 58.161 40.909 0.00 0.00 41.22 3.36
2765 5829 4.219115 TGCAGTTGATACCCAAAAAGGAA 58.781 39.130 0.00 0.00 41.22 3.36
2766 5830 4.651503 TGCAGTTGATACCCAAAAAGGAAA 59.348 37.500 0.00 0.00 41.22 3.13
2767 5831 5.129485 TGCAGTTGATACCCAAAAAGGAAAA 59.871 36.000 0.00 0.00 41.22 2.29
2768 5832 6.052360 GCAGTTGATACCCAAAAAGGAAAAA 58.948 36.000 0.00 0.00 41.22 1.94
2769 5833 6.018262 GCAGTTGATACCCAAAAAGGAAAAAC 60.018 38.462 0.00 0.00 41.22 2.43
2770 5834 7.272244 CAGTTGATACCCAAAAAGGAAAAACT 58.728 34.615 0.00 0.00 41.22 2.66
2771 5835 8.417884 CAGTTGATACCCAAAAAGGAAAAACTA 58.582 33.333 0.00 0.00 41.22 2.24
2772 5836 8.983789 AGTTGATACCCAAAAAGGAAAAACTAA 58.016 29.630 0.00 0.00 41.22 2.24
2773 5837 9.256477 GTTGATACCCAAAAAGGAAAAACTAAG 57.744 33.333 0.00 0.00 41.22 2.18
2774 5838 8.770010 TGATACCCAAAAAGGAAAAACTAAGA 57.230 30.769 0.00 0.00 41.22 2.10
2775 5839 9.374711 TGATACCCAAAAAGGAAAAACTAAGAT 57.625 29.630 0.00 0.00 41.22 2.40
2776 5840 9.639601 GATACCCAAAAAGGAAAAACTAAGATG 57.360 33.333 0.00 0.00 41.22 2.90
2777 5841 6.826668 ACCCAAAAAGGAAAAACTAAGATGG 58.173 36.000 0.00 0.00 41.22 3.51
2778 5842 6.613679 ACCCAAAAAGGAAAAACTAAGATGGA 59.386 34.615 0.00 0.00 41.22 3.41
2779 5843 6.929049 CCCAAAAAGGAAAAACTAAGATGGAC 59.071 38.462 0.00 0.00 41.22 4.02
2780 5844 6.929049 CCAAAAAGGAAAAACTAAGATGGACC 59.071 38.462 0.00 0.00 41.22 4.46
2781 5845 7.202001 CCAAAAAGGAAAAACTAAGATGGACCT 60.202 37.037 0.00 0.00 41.22 3.85
2782 5846 7.914427 AAAAGGAAAAACTAAGATGGACCTT 57.086 32.000 0.00 0.00 36.90 3.50
2783 5847 6.901081 AAGGAAAAACTAAGATGGACCTTG 57.099 37.500 0.00 0.00 34.57 3.61
2784 5848 5.325239 AGGAAAAACTAAGATGGACCTTGG 58.675 41.667 0.00 0.00 0.00 3.61
2785 5849 5.077564 GGAAAAACTAAGATGGACCTTGGT 58.922 41.667 0.00 0.00 39.13 3.67
2786 5850 5.183331 GGAAAAACTAAGATGGACCTTGGTC 59.817 44.000 11.13 11.13 36.95 4.02
2787 5851 4.302559 AAACTAAGATGGACCTTGGTCC 57.697 45.455 27.21 27.21 43.60 4.46
2788 5852 3.207044 ACTAAGATGGACCTTGGTCCT 57.793 47.619 31.56 20.50 43.68 3.85
2789 5853 3.532102 ACTAAGATGGACCTTGGTCCTT 58.468 45.455 31.56 27.02 43.68 3.36
2790 5854 4.695606 ACTAAGATGGACCTTGGTCCTTA 58.304 43.478 31.56 22.33 43.68 2.69
2791 5855 5.098663 ACTAAGATGGACCTTGGTCCTTAA 58.901 41.667 31.56 17.39 43.68 1.85
2792 5856 5.731678 ACTAAGATGGACCTTGGTCCTTAAT 59.268 40.000 31.56 20.69 43.68 1.40
2793 5857 4.779993 AGATGGACCTTGGTCCTTAATC 57.220 45.455 31.56 25.81 43.68 1.75
2794 5858 3.134804 AGATGGACCTTGGTCCTTAATCG 59.865 47.826 31.56 0.00 43.68 3.34
2795 5859 1.065709 TGGACCTTGGTCCTTAATCGC 60.066 52.381 31.56 10.04 43.68 4.58
2796 5860 1.065709 GGACCTTGGTCCTTAATCGCA 60.066 52.381 26.80 0.00 40.27 5.10
2797 5861 2.280628 GACCTTGGTCCTTAATCGCAG 58.719 52.381 8.54 0.00 0.00 5.18
2798 5862 1.017387 CCTTGGTCCTTAATCGCAGC 58.983 55.000 0.00 0.00 0.00 5.25
2799 5863 1.678728 CCTTGGTCCTTAATCGCAGCA 60.679 52.381 0.00 0.00 0.00 4.41
2800 5864 1.667724 CTTGGTCCTTAATCGCAGCAG 59.332 52.381 0.00 0.00 0.00 4.24
2801 5865 0.744414 TGGTCCTTAATCGCAGCAGC 60.744 55.000 0.00 0.00 37.42 5.25
2802 5866 1.440145 GGTCCTTAATCGCAGCAGCC 61.440 60.000 0.00 0.00 37.52 4.85
2803 5867 1.153168 TCCTTAATCGCAGCAGCCC 60.153 57.895 0.00 0.00 37.52 5.19
2804 5868 1.451927 CCTTAATCGCAGCAGCCCA 60.452 57.895 0.00 0.00 37.52 5.36
2805 5869 1.718757 CCTTAATCGCAGCAGCCCAC 61.719 60.000 0.00 0.00 37.52 4.61
2806 5870 0.745845 CTTAATCGCAGCAGCCCACT 60.746 55.000 0.00 0.00 37.52 4.00
2816 5880 2.977178 AGCCCACTGAGCTTCTCG 59.023 61.111 0.00 0.00 37.24 4.04
2817 5881 1.910772 AGCCCACTGAGCTTCTCGT 60.911 57.895 0.00 0.00 37.24 4.18
2818 5882 1.446966 GCCCACTGAGCTTCTCGTC 60.447 63.158 0.00 0.00 32.35 4.20
2819 5883 1.967535 CCCACTGAGCTTCTCGTCA 59.032 57.895 0.00 0.00 32.35 4.35
2820 5884 0.318441 CCCACTGAGCTTCTCGTCAA 59.682 55.000 0.00 0.00 32.35 3.18
2821 5885 1.270305 CCCACTGAGCTTCTCGTCAAA 60.270 52.381 0.00 0.00 32.35 2.69
2822 5886 2.064762 CCACTGAGCTTCTCGTCAAAG 58.935 52.381 0.00 0.00 32.35 2.77
2823 5887 2.064762 CACTGAGCTTCTCGTCAAAGG 58.935 52.381 0.00 0.00 32.35 3.11
2824 5888 1.074752 CTGAGCTTCTCGTCAAAGGC 58.925 55.000 0.00 0.00 32.35 4.35
2825 5889 0.392706 TGAGCTTCTCGTCAAAGGCA 59.607 50.000 0.00 0.00 32.35 4.75
2826 5890 1.074752 GAGCTTCTCGTCAAAGGCAG 58.925 55.000 0.00 0.00 0.00 4.85
2827 5891 0.952984 AGCTTCTCGTCAAAGGCAGC 60.953 55.000 0.00 0.00 0.00 5.25
2828 5892 1.916697 GCTTCTCGTCAAAGGCAGCC 61.917 60.000 1.84 1.84 0.00 4.85
2829 5893 0.321122 CTTCTCGTCAAAGGCAGCCT 60.321 55.000 8.70 8.70 33.87 4.58
2830 5894 0.603707 TTCTCGTCAAAGGCAGCCTG 60.604 55.000 17.05 4.16 32.13 4.85
2831 5895 1.302033 CTCGTCAAAGGCAGCCTGT 60.302 57.895 17.05 6.48 32.13 4.00
2832 5896 1.294659 CTCGTCAAAGGCAGCCTGTC 61.295 60.000 17.05 5.07 32.13 3.51
2833 5897 1.597854 CGTCAAAGGCAGCCTGTCA 60.598 57.895 17.05 0.00 32.13 3.58
2834 5898 1.572085 CGTCAAAGGCAGCCTGTCAG 61.572 60.000 17.05 5.50 32.13 3.51
2835 5899 1.073722 TCAAAGGCAGCCTGTCAGG 59.926 57.895 17.05 15.15 38.80 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.218338 TCGAGAAGGTATTCGTATAGTTCTTT 57.782 34.615 7.58 0.00 40.58 2.52
1 2 7.798596 TCGAGAAGGTATTCGTATAGTTCTT 57.201 36.000 7.58 1.95 40.58 2.52
3 4 7.859598 TCTTCGAGAAGGTATTCGTATAGTTC 58.140 38.462 12.32 0.00 40.58 3.01
4 5 7.798596 TCTTCGAGAAGGTATTCGTATAGTT 57.201 36.000 12.32 0.00 40.58 2.24
5 6 7.798596 TTCTTCGAGAAGGTATTCGTATAGT 57.201 36.000 12.32 0.00 40.58 2.12
6 7 8.344098 AGTTTCTTCGAGAAGGTATTCGTATAG 58.656 37.037 12.32 0.00 40.58 1.31
7 8 8.127327 CAGTTTCTTCGAGAAGGTATTCGTATA 58.873 37.037 12.32 0.00 40.58 1.47
9 10 6.072286 ACAGTTTCTTCGAGAAGGTATTCGTA 60.072 38.462 12.32 0.00 40.58 3.43
10 11 5.162075 CAGTTTCTTCGAGAAGGTATTCGT 58.838 41.667 12.32 0.00 40.58 3.85
11 12 5.162075 ACAGTTTCTTCGAGAAGGTATTCG 58.838 41.667 12.32 0.00 40.58 3.34
12 13 6.752815 CCTACAGTTTCTTCGAGAAGGTATTC 59.247 42.308 12.32 1.27 35.37 1.75
13 14 6.210984 ACCTACAGTTTCTTCGAGAAGGTATT 59.789 38.462 12.32 0.00 35.37 1.89
14 15 5.715753 ACCTACAGTTTCTTCGAGAAGGTAT 59.284 40.000 12.32 0.00 35.37 2.73
15 16 5.075493 ACCTACAGTTTCTTCGAGAAGGTA 58.925 41.667 12.32 6.03 35.37 3.08
16 17 3.896272 ACCTACAGTTTCTTCGAGAAGGT 59.104 43.478 12.32 5.27 35.37 3.50
17 18 4.522722 ACCTACAGTTTCTTCGAGAAGG 57.477 45.455 12.32 0.00 35.37 3.46
18 19 7.313646 TGAATACCTACAGTTTCTTCGAGAAG 58.686 38.462 6.51 6.51 35.37 2.85
19 20 7.223260 TGAATACCTACAGTTTCTTCGAGAA 57.777 36.000 0.00 0.00 31.28 2.87
20 21 6.625300 GCTGAATACCTACAGTTTCTTCGAGA 60.625 42.308 0.00 0.00 36.62 4.04
21 22 5.517054 GCTGAATACCTACAGTTTCTTCGAG 59.483 44.000 0.00 0.00 36.62 4.04
22 23 5.408356 GCTGAATACCTACAGTTTCTTCGA 58.592 41.667 0.00 0.00 36.62 3.71
23 24 4.567159 GGCTGAATACCTACAGTTTCTTCG 59.433 45.833 0.00 0.00 36.62 3.79
24 25 4.876679 GGGCTGAATACCTACAGTTTCTTC 59.123 45.833 0.00 0.00 36.62 2.87
25 26 4.288626 TGGGCTGAATACCTACAGTTTCTT 59.711 41.667 0.00 0.00 36.62 2.52
26 27 3.844211 TGGGCTGAATACCTACAGTTTCT 59.156 43.478 0.00 0.00 36.62 2.52
27 28 4.216411 TGGGCTGAATACCTACAGTTTC 57.784 45.455 0.00 0.00 36.62 2.78
28 29 4.227300 TCATGGGCTGAATACCTACAGTTT 59.773 41.667 0.00 0.00 36.62 2.66
29 30 3.780294 TCATGGGCTGAATACCTACAGTT 59.220 43.478 0.00 0.00 36.62 3.16
30 31 3.134804 GTCATGGGCTGAATACCTACAGT 59.865 47.826 0.00 0.00 35.07 3.55
31 32 3.134623 TGTCATGGGCTGAATACCTACAG 59.865 47.826 0.00 0.00 35.07 2.74
32 33 3.111484 TGTCATGGGCTGAATACCTACA 58.889 45.455 0.00 0.00 35.07 2.74
33 34 3.838244 TGTCATGGGCTGAATACCTAC 57.162 47.619 0.00 0.00 35.07 3.18
34 35 4.853468 TTTGTCATGGGCTGAATACCTA 57.147 40.909 0.00 0.00 35.07 3.08
35 36 3.737559 TTTGTCATGGGCTGAATACCT 57.262 42.857 0.00 0.00 35.07 3.08
36 37 3.509575 TGTTTTGTCATGGGCTGAATACC 59.490 43.478 0.00 0.00 35.07 2.73
37 38 4.218417 ACTGTTTTGTCATGGGCTGAATAC 59.782 41.667 0.00 0.00 35.07 1.89
38 39 4.406456 ACTGTTTTGTCATGGGCTGAATA 58.594 39.130 0.00 0.00 35.07 1.75
39 40 3.233507 ACTGTTTTGTCATGGGCTGAAT 58.766 40.909 0.00 0.00 35.07 2.57
40 41 2.622942 GACTGTTTTGTCATGGGCTGAA 59.377 45.455 0.00 0.00 35.07 3.02
41 42 2.229792 GACTGTTTTGTCATGGGCTGA 58.770 47.619 0.00 0.00 36.97 4.26
42 43 1.069022 CGACTGTTTTGTCATGGGCTG 60.069 52.381 0.00 0.00 36.82 4.85
43 44 1.238439 CGACTGTTTTGTCATGGGCT 58.762 50.000 0.00 0.00 36.82 5.19
44 45 0.387239 GCGACTGTTTTGTCATGGGC 60.387 55.000 0.00 0.00 36.82 5.36
45 46 0.110238 CGCGACTGTTTTGTCATGGG 60.110 55.000 0.00 0.00 36.82 4.00
46 47 0.586319 ACGCGACTGTTTTGTCATGG 59.414 50.000 15.93 0.00 36.82 3.66
47 48 1.660052 CCACGCGACTGTTTTGTCATG 60.660 52.381 15.93 0.00 36.82 3.07
48 49 0.586319 CCACGCGACTGTTTTGTCAT 59.414 50.000 15.93 0.00 36.82 3.06
49 50 1.433053 CCCACGCGACTGTTTTGTCA 61.433 55.000 15.93 0.00 36.82 3.58
50 51 1.155424 TCCCACGCGACTGTTTTGTC 61.155 55.000 15.93 0.00 0.00 3.18
51 52 1.153329 TCCCACGCGACTGTTTTGT 60.153 52.632 15.93 0.00 0.00 2.83
52 53 1.569493 CTCCCACGCGACTGTTTTG 59.431 57.895 15.93 0.00 0.00 2.44
53 54 1.597027 CCTCCCACGCGACTGTTTT 60.597 57.895 15.93 0.00 0.00 2.43
54 55 2.030562 CCTCCCACGCGACTGTTT 59.969 61.111 15.93 0.00 0.00 2.83
55 56 4.003788 CCCTCCCACGCGACTGTT 62.004 66.667 15.93 0.00 0.00 3.16
64 65 1.966451 CAGTTTCGTGCCCTCCCAC 60.966 63.158 0.00 0.00 0.00 4.61
65 66 2.429930 CAGTTTCGTGCCCTCCCA 59.570 61.111 0.00 0.00 0.00 4.37
66 67 3.056328 GCAGTTTCGTGCCCTCCC 61.056 66.667 0.00 0.00 37.49 4.30
67 68 2.281484 TGCAGTTTCGTGCCCTCC 60.281 61.111 0.00 0.00 43.28 4.30
68 69 2.328099 CCTGCAGTTTCGTGCCCTC 61.328 63.158 13.81 0.00 43.28 4.30
69 70 2.281761 CCTGCAGTTTCGTGCCCT 60.282 61.111 13.81 0.00 43.28 5.19
70 71 4.043200 GCCTGCAGTTTCGTGCCC 62.043 66.667 13.81 0.00 43.28 5.36
177 178 2.172483 GAGGAAGTTCAGCTGGCCGA 62.172 60.000 15.13 0.00 0.00 5.54
184 185 0.319900 TGCAGTCGAGGAAGTTCAGC 60.320 55.000 5.01 0.00 0.00 4.26
232 233 1.673665 GCAGACCTGGTGGCTCTTG 60.674 63.158 2.82 0.00 36.63 3.02
263 266 4.518970 CAGTAATAAACACAAGCACCTGGT 59.481 41.667 0.00 0.00 0.00 4.00
388 400 1.075536 AGCCAAGGAAAACCAGTAGGG 59.924 52.381 0.00 0.00 44.81 3.53
389 401 2.586648 AGCCAAGGAAAACCAGTAGG 57.413 50.000 0.00 0.00 42.21 3.18
413 425 2.729028 TAGTACCCCGTACCAGTACC 57.271 55.000 9.81 0.00 39.58 3.34
414 426 3.820557 TCATAGTACCCCGTACCAGTAC 58.179 50.000 6.62 6.62 39.58 2.73
415 427 4.729552 ATCATAGTACCCCGTACCAGTA 57.270 45.455 0.00 0.00 39.58 2.74
416 428 3.607490 ATCATAGTACCCCGTACCAGT 57.393 47.619 0.00 0.00 39.58 4.00
417 429 4.142227 GCATATCATAGTACCCCGTACCAG 60.142 50.000 0.00 0.00 39.58 4.00
418 430 3.765511 GCATATCATAGTACCCCGTACCA 59.234 47.826 0.00 0.00 39.58 3.25
517 534 2.373169 TCTTCAGCTCCACAAACCATCT 59.627 45.455 0.00 0.00 0.00 2.90
562 697 4.170256 GGACGAGACTAGCAGAAGAAAAG 58.830 47.826 0.00 0.00 0.00 2.27
573 708 6.968250 AGATTAAATAACCGGACGAGACTAG 58.032 40.000 9.46 0.00 0.00 2.57
574 709 6.949352 AGATTAAATAACCGGACGAGACTA 57.051 37.500 9.46 0.00 0.00 2.59
580 715 7.201444 GCAGATCATAGATTAAATAACCGGACG 60.201 40.741 9.46 0.00 0.00 4.79
678 819 6.257849 TGCGAAGGAAGTAATAACATGATGAC 59.742 38.462 0.00 0.00 0.00 3.06
700 841 4.563337 AGGTCATTGAATGATTCATGCG 57.437 40.909 11.46 1.08 42.04 4.73
739 880 7.009174 CACGAGAAGCAAAAACAGTTAAAACAT 59.991 33.333 0.00 0.00 0.00 2.71
784 926 1.741706 CCTACTGCCAAGCAATCTGTG 59.258 52.381 0.00 0.00 38.41 3.66
785 927 1.630369 TCCTACTGCCAAGCAATCTGT 59.370 47.619 0.00 0.00 38.41 3.41
831 973 7.233962 TCCACTGAGTACTGACCAATACTTTTA 59.766 37.037 0.00 0.00 31.69 1.52
840 982 2.567169 CCAATCCACTGAGTACTGACCA 59.433 50.000 0.00 0.00 0.00 4.02
852 994 2.036256 GCACAGCCCCAATCCACT 59.964 61.111 0.00 0.00 0.00 4.00
875 1021 1.601903 TCACGTTCAACAAGCATCCAC 59.398 47.619 0.00 0.00 0.00 4.02
897 1043 1.969862 GCCTTCAGCAAACATGGCT 59.030 52.632 0.00 0.00 43.77 4.75
959 1105 3.008375 TGTTGCTCTAACCTGAATGCTCT 59.992 43.478 0.00 0.00 38.55 4.09
974 1120 1.737793 CGGAAGTTATGGGTGTTGCTC 59.262 52.381 0.00 0.00 0.00 4.26
996 1142 1.000274 GTGAAGTTGTTGGCCATGGAC 60.000 52.381 18.40 15.32 0.00 4.02
997 1143 1.133513 AGTGAAGTTGTTGGCCATGGA 60.134 47.619 18.40 0.00 0.00 3.41
1161 1307 4.435436 CAGCCGTAGCCGCTGACA 62.435 66.667 2.16 0.00 41.25 3.58
1205 1351 1.204146 GGCATCTGTACCCTCCTTCA 58.796 55.000 0.00 0.00 0.00 3.02
1214 1360 2.743938 CCGACATGTAGGCATCTGTAC 58.256 52.381 12.37 0.00 31.99 2.90
1377 1627 7.646130 TCCTTAAGTTTGTTGTTCGCAATAAAG 59.354 33.333 0.97 0.00 44.72 1.85
1385 1635 4.733405 GCAGTTCCTTAAGTTTGTTGTTCG 59.267 41.667 0.97 0.00 0.00 3.95
1390 1640 7.522236 GCAAGATAGCAGTTCCTTAAGTTTGTT 60.522 37.037 0.97 0.00 0.00 2.83
1391 1641 6.072452 GCAAGATAGCAGTTCCTTAAGTTTGT 60.072 38.462 0.97 0.00 0.00 2.83
1395 1645 5.165961 TGCAAGATAGCAGTTCCTTAAGT 57.834 39.130 0.97 0.00 40.11 2.24
1413 1663 1.264020 GTGAAGCAGTCGTCATTGCAA 59.736 47.619 0.00 0.00 42.67 4.08
1414 1664 0.867746 GTGAAGCAGTCGTCATTGCA 59.132 50.000 0.00 0.00 42.67 4.08
1651 1905 5.964958 TTCATGGTGGTCTCTTTCATTTC 57.035 39.130 0.00 0.00 0.00 2.17
1806 2060 1.686325 CCCTGTCCAGTCCATACCGG 61.686 65.000 0.00 0.00 0.00 5.28
1850 2109 5.368256 ACTGTTTGCACATCAATTCTCTC 57.632 39.130 0.00 0.00 34.12 3.20
1929 4625 5.046304 CCCTGTGAAGAAAGGTATCTGAGAA 60.046 44.000 0.00 0.00 0.00 2.87
1954 4650 1.134128 TCCTTGACAGCTTGAAGCACA 60.134 47.619 20.45 13.01 45.56 4.57
1983 4679 2.254546 TGTCGTGAGGTGCTTGAATT 57.745 45.000 0.00 0.00 0.00 2.17
1999 4695 3.973657 CATAATTGATGGGCAGCTTGTC 58.026 45.455 0.00 0.00 31.20 3.18
2084 4915 2.688507 AGTTGCACAAGTCGGATACTG 58.311 47.619 0.00 0.00 38.88 2.74
2099 4930 2.098117 ACACTTGACAGCTTGAAGTTGC 59.902 45.455 9.01 3.15 28.70 4.17
2101 4932 3.609853 TCACACTTGACAGCTTGAAGTT 58.390 40.909 0.00 0.00 0.00 2.66
2141 4972 8.706936 CACTGGACAGATGATAAAAATCGATAG 58.293 37.037 6.29 0.00 0.00 2.08
2190 5039 0.976641 AGCACACATTCCCGAAGAGA 59.023 50.000 0.00 0.00 0.00 3.10
2261 5110 6.458342 GCCAATAAGCCATAGTTACAGTCAAC 60.458 42.308 0.00 0.00 0.00 3.18
2353 5284 5.746721 CCTTGTAACTGTTTTTGGTTAGTGC 59.253 40.000 0.00 0.00 0.00 4.40
2388 5327 5.422331 AGAAGTAGCACATTAGCCTCTTGTA 59.578 40.000 0.00 0.00 31.52 2.41
2405 5361 4.730966 TGGCCCTCTCTATACAGAAGTAG 58.269 47.826 0.00 0.00 32.86 2.57
2439 5395 3.126831 GACTCCGGCTCAATAACATCAG 58.873 50.000 0.00 0.00 0.00 2.90
2446 5402 0.179111 CAAGCGACTCCGGCTCAATA 60.179 55.000 0.00 0.00 40.53 1.90
2450 5406 2.095252 GTTCAAGCGACTCCGGCTC 61.095 63.158 0.00 0.00 40.53 4.70
2454 5410 0.994995 CAGATGTTCAAGCGACTCCG 59.005 55.000 0.00 0.00 39.16 4.63
2455 5411 2.370281 TCAGATGTTCAAGCGACTCC 57.630 50.000 0.00 0.00 0.00 3.85
2457 5413 4.184629 GGTAATCAGATGTTCAAGCGACT 58.815 43.478 0.00 0.00 0.00 4.18
2458 5414 3.309954 GGGTAATCAGATGTTCAAGCGAC 59.690 47.826 0.00 0.00 0.00 5.19
2459 5415 3.531538 GGGTAATCAGATGTTCAAGCGA 58.468 45.455 0.00 0.00 0.00 4.93
2461 5417 2.614057 CGGGGTAATCAGATGTTCAAGC 59.386 50.000 0.00 0.00 0.00 4.01
2462 5418 3.873910 ACGGGGTAATCAGATGTTCAAG 58.126 45.455 0.00 0.00 0.00 3.02
2464 5420 3.262151 TCAACGGGGTAATCAGATGTTCA 59.738 43.478 0.00 0.00 0.00 3.18
2465 5421 3.869065 TCAACGGGGTAATCAGATGTTC 58.131 45.455 0.00 0.00 0.00 3.18
2466 5422 3.370527 CCTCAACGGGGTAATCAGATGTT 60.371 47.826 0.00 0.00 0.00 2.71
2467 5423 2.170607 CCTCAACGGGGTAATCAGATGT 59.829 50.000 0.00 0.00 0.00 3.06
2468 5424 2.170607 ACCTCAACGGGGTAATCAGATG 59.829 50.000 0.00 0.00 35.00 2.90
2481 5466 2.260844 ATGGCATCCATACCTCAACG 57.739 50.000 0.00 0.00 43.19 4.10
2483 5468 4.464008 GAGAAATGGCATCCATACCTCAA 58.536 43.478 0.00 0.00 44.40 3.02
2487 5472 2.519013 GGGAGAAATGGCATCCATACC 58.481 52.381 0.00 1.41 44.40 2.73
2493 5478 1.463674 AACACGGGAGAAATGGCATC 58.536 50.000 0.00 0.00 0.00 3.91
2494 5479 1.545582 CAAACACGGGAGAAATGGCAT 59.454 47.619 0.00 0.00 0.00 4.40
2497 5482 2.226330 TGTCAAACACGGGAGAAATGG 58.774 47.619 0.00 0.00 0.00 3.16
2500 5485 2.992124 TCTGTCAAACACGGGAGAAA 57.008 45.000 0.00 0.00 31.32 2.52
2501 5486 2.766313 CATCTGTCAAACACGGGAGAA 58.234 47.619 0.00 0.00 31.32 2.87
2502 5487 1.608025 GCATCTGTCAAACACGGGAGA 60.608 52.381 0.00 0.00 31.32 3.71
2503 5488 0.798776 GCATCTGTCAAACACGGGAG 59.201 55.000 0.00 0.00 31.32 4.30
2504 5489 0.396435 AGCATCTGTCAAACACGGGA 59.604 50.000 0.00 0.00 31.32 5.14
2505 5490 2.002586 CTAGCATCTGTCAAACACGGG 58.997 52.381 0.00 0.00 31.32 5.28
2506 5491 2.002586 CCTAGCATCTGTCAAACACGG 58.997 52.381 0.00 0.00 0.00 4.94
2507 5492 2.688507 ACCTAGCATCTGTCAAACACG 58.311 47.619 0.00 0.00 0.00 4.49
2508 5493 3.189287 CCAACCTAGCATCTGTCAAACAC 59.811 47.826 0.00 0.00 0.00 3.32
2509 5494 3.411446 CCAACCTAGCATCTGTCAAACA 58.589 45.455 0.00 0.00 0.00 2.83
2510 5495 2.749621 CCCAACCTAGCATCTGTCAAAC 59.250 50.000 0.00 0.00 0.00 2.93
2511 5496 2.290896 CCCCAACCTAGCATCTGTCAAA 60.291 50.000 0.00 0.00 0.00 2.69
2512 5497 1.281867 CCCCAACCTAGCATCTGTCAA 59.718 52.381 0.00 0.00 0.00 3.18
2514 5499 0.181350 CCCCCAACCTAGCATCTGTC 59.819 60.000 0.00 0.00 0.00 3.51
2515 5500 0.550147 ACCCCCAACCTAGCATCTGT 60.550 55.000 0.00 0.00 0.00 3.41
2516 5501 0.181350 GACCCCCAACCTAGCATCTG 59.819 60.000 0.00 0.00 0.00 2.90
2518 5503 0.470341 GAGACCCCCAACCTAGCATC 59.530 60.000 0.00 0.00 0.00 3.91
2519 5504 0.044855 AGAGACCCCCAACCTAGCAT 59.955 55.000 0.00 0.00 0.00 3.79
2520 5505 0.178873 AAGAGACCCCCAACCTAGCA 60.179 55.000 0.00 0.00 0.00 3.49
2523 5508 0.494551 TGGAAGAGACCCCCAACCTA 59.505 55.000 0.00 0.00 0.00 3.08
2524 5509 0.178831 ATGGAAGAGACCCCCAACCT 60.179 55.000 0.00 0.00 33.15 3.50
2525 5510 0.704664 AATGGAAGAGACCCCCAACC 59.295 55.000 0.00 0.00 33.15 3.77
2526 5511 1.075536 ACAATGGAAGAGACCCCCAAC 59.924 52.381 0.00 0.00 33.15 3.77
2527 5512 1.075374 CACAATGGAAGAGACCCCCAA 59.925 52.381 0.00 0.00 33.15 4.12
2530 5515 2.558359 CAAACACAATGGAAGAGACCCC 59.442 50.000 0.00 0.00 0.00 4.95
2531 5516 3.253432 GTCAAACACAATGGAAGAGACCC 59.747 47.826 0.00 0.00 0.00 4.46
2532 5517 3.882888 TGTCAAACACAATGGAAGAGACC 59.117 43.478 0.00 0.00 29.30 3.85
2535 5520 5.471116 TCATCTGTCAAACACAATGGAAGAG 59.529 40.000 0.00 0.00 33.31 2.85
2565 5621 2.035066 GGCAGAAATGGCATCCATACAC 59.965 50.000 0.00 0.00 44.40 2.90
2566 5622 2.309613 GGCAGAAATGGCATCCATACA 58.690 47.619 0.00 0.00 44.40 2.29
2567 5623 1.267806 CGGCAGAAATGGCATCCATAC 59.732 52.381 0.00 0.00 44.40 2.39
2568 5624 1.133823 ACGGCAGAAATGGCATCCATA 60.134 47.619 0.00 0.00 44.40 2.74
2578 5634 2.840974 CCGAGAACACGGCAGAAAT 58.159 52.632 0.00 0.00 46.20 2.17
2605 5661 9.691362 ATAATAACCAAGCAAACAACAACTAAG 57.309 29.630 0.00 0.00 0.00 2.18
2606 5662 9.685828 GATAATAACCAAGCAAACAACAACTAA 57.314 29.630 0.00 0.00 0.00 2.24
2615 5671 6.431198 TCCGAAGATAATAACCAAGCAAAC 57.569 37.500 0.00 0.00 0.00 2.93
2635 5691 5.171476 AGTACAAACATGACAGATCTTCCG 58.829 41.667 0.00 0.00 0.00 4.30
2643 5699 3.184379 CACCACGAGTACAAACATGACAG 59.816 47.826 0.00 0.00 0.00 3.51
2645 5701 3.128349 ACACCACGAGTACAAACATGAC 58.872 45.455 0.00 0.00 0.00 3.06
2646 5702 3.462483 ACACCACGAGTACAAACATGA 57.538 42.857 0.00 0.00 0.00 3.07
2647 5703 4.545823 AAACACCACGAGTACAAACATG 57.454 40.909 0.00 0.00 0.00 3.21
2648 5704 5.570234 AAAAACACCACGAGTACAAACAT 57.430 34.783 0.00 0.00 0.00 2.71
2654 5710 1.528161 CCCGAAAAACACCACGAGTAC 59.472 52.381 0.00 0.00 0.00 2.73
2655 5711 1.540797 CCCCGAAAAACACCACGAGTA 60.541 52.381 0.00 0.00 0.00 2.59
2656 5712 0.816421 CCCCGAAAAACACCACGAGT 60.816 55.000 0.00 0.00 0.00 4.18
2657 5713 0.816421 ACCCCGAAAAACACCACGAG 60.816 55.000 0.00 0.00 0.00 4.18
2659 5715 1.357334 CACCCCGAAAAACACCACG 59.643 57.895 0.00 0.00 0.00 4.94
2660 5716 1.066752 GCACCCCGAAAAACACCAC 59.933 57.895 0.00 0.00 0.00 4.16
2669 5730 1.841556 ACTGGAGAAGCACCCCGAA 60.842 57.895 0.00 0.00 0.00 4.30
2670 5731 2.203788 ACTGGAGAAGCACCCCGA 60.204 61.111 0.00 0.00 0.00 5.14
2674 5735 0.398318 AGGAACACTGGAGAAGCACC 59.602 55.000 0.00 0.00 0.00 5.01
2691 5752 2.425143 TTATTCAGGCCAAGAGCAGG 57.575 50.000 5.01 0.00 46.50 4.85
2692 5753 4.789012 TTTTTATTCAGGCCAAGAGCAG 57.211 40.909 5.01 0.00 46.50 4.24
2712 5776 4.069304 ACATACACACATTACACGGCTTT 58.931 39.130 0.00 0.00 0.00 3.51
2713 5777 3.670625 ACATACACACATTACACGGCTT 58.329 40.909 0.00 0.00 0.00 4.35
2714 5778 3.328382 ACATACACACATTACACGGCT 57.672 42.857 0.00 0.00 0.00 5.52
2717 5781 8.014322 AGTAAGAAACATACACACATTACACG 57.986 34.615 0.00 0.00 0.00 4.49
2718 5782 9.594038 CAAGTAAGAAACATACACACATTACAC 57.406 33.333 0.00 0.00 0.00 2.90
2719 5783 8.286800 GCAAGTAAGAAACATACACACATTACA 58.713 33.333 0.00 0.00 0.00 2.41
2720 5784 8.286800 TGCAAGTAAGAAACATACACACATTAC 58.713 33.333 0.00 0.00 0.00 1.89
2721 5785 8.384607 TGCAAGTAAGAAACATACACACATTA 57.615 30.769 0.00 0.00 0.00 1.90
2722 5786 7.270757 TGCAAGTAAGAAACATACACACATT 57.729 32.000 0.00 0.00 0.00 2.71
2743 5807 3.838565 TCCTTTTTGGGTATCAACTGCA 58.161 40.909 0.00 0.00 34.67 4.41
2744 5808 4.864704 TTCCTTTTTGGGTATCAACTGC 57.135 40.909 0.00 0.00 34.67 4.40
2745 5809 7.272244 AGTTTTTCCTTTTTGGGTATCAACTG 58.728 34.615 0.00 0.00 34.67 3.16
2746 5810 7.432148 AGTTTTTCCTTTTTGGGTATCAACT 57.568 32.000 0.00 0.00 34.67 3.16
2747 5811 9.256477 CTTAGTTTTTCCTTTTTGGGTATCAAC 57.744 33.333 0.00 0.00 34.67 3.18
2748 5812 9.203163 TCTTAGTTTTTCCTTTTTGGGTATCAA 57.797 29.630 0.00 0.00 36.20 2.57
2749 5813 8.770010 TCTTAGTTTTTCCTTTTTGGGTATCA 57.230 30.769 0.00 0.00 36.20 2.15
2750 5814 9.639601 CATCTTAGTTTTTCCTTTTTGGGTATC 57.360 33.333 0.00 0.00 36.20 2.24
2751 5815 8.593679 CCATCTTAGTTTTTCCTTTTTGGGTAT 58.406 33.333 0.00 0.00 36.20 2.73
2752 5816 7.785506 TCCATCTTAGTTTTTCCTTTTTGGGTA 59.214 33.333 0.00 0.00 36.20 3.69
2753 5817 6.613679 TCCATCTTAGTTTTTCCTTTTTGGGT 59.386 34.615 0.00 0.00 36.20 4.51
2754 5818 6.929049 GTCCATCTTAGTTTTTCCTTTTTGGG 59.071 38.462 0.00 0.00 36.20 4.12
2755 5819 6.929049 GGTCCATCTTAGTTTTTCCTTTTTGG 59.071 38.462 0.00 0.00 37.10 3.28
2756 5820 7.726216 AGGTCCATCTTAGTTTTTCCTTTTTG 58.274 34.615 0.00 0.00 0.00 2.44
2757 5821 7.914427 AGGTCCATCTTAGTTTTTCCTTTTT 57.086 32.000 0.00 0.00 0.00 1.94
2758 5822 7.202001 CCAAGGTCCATCTTAGTTTTTCCTTTT 60.202 37.037 0.00 0.00 31.59 2.27
2759 5823 6.267699 CCAAGGTCCATCTTAGTTTTTCCTTT 59.732 38.462 0.00 0.00 31.59 3.11
2760 5824 5.775195 CCAAGGTCCATCTTAGTTTTTCCTT 59.225 40.000 0.00 0.00 33.79 3.36
2761 5825 5.162980 ACCAAGGTCCATCTTAGTTTTTCCT 60.163 40.000 0.00 0.00 0.00 3.36
2762 5826 5.077564 ACCAAGGTCCATCTTAGTTTTTCC 58.922 41.667 0.00 0.00 0.00 3.13
2763 5827 6.255596 GACCAAGGTCCATCTTAGTTTTTC 57.744 41.667 8.06 0.00 39.08 2.29
2777 5841 2.280628 CTGCGATTAAGGACCAAGGTC 58.719 52.381 10.80 10.80 43.87 3.85
2778 5842 1.679032 GCTGCGATTAAGGACCAAGGT 60.679 52.381 0.00 0.00 0.00 3.50
2779 5843 1.017387 GCTGCGATTAAGGACCAAGG 58.983 55.000 0.00 0.00 0.00 3.61
2780 5844 1.667724 CTGCTGCGATTAAGGACCAAG 59.332 52.381 0.00 0.00 0.00 3.61
2781 5845 1.737838 CTGCTGCGATTAAGGACCAA 58.262 50.000 0.00 0.00 0.00 3.67
2782 5846 0.744414 GCTGCTGCGATTAAGGACCA 60.744 55.000 0.00 0.00 0.00 4.02
2783 5847 1.440145 GGCTGCTGCGATTAAGGACC 61.440 60.000 9.65 0.00 40.82 4.46
2784 5848 1.440145 GGGCTGCTGCGATTAAGGAC 61.440 60.000 9.65 0.00 40.82 3.85
2785 5849 1.153168 GGGCTGCTGCGATTAAGGA 60.153 57.895 9.65 0.00 40.82 3.36
2786 5850 1.451927 TGGGCTGCTGCGATTAAGG 60.452 57.895 9.65 0.00 40.82 2.69
2787 5851 0.745845 AGTGGGCTGCTGCGATTAAG 60.746 55.000 9.65 0.00 40.82 1.85
2788 5852 1.026182 CAGTGGGCTGCTGCGATTAA 61.026 55.000 9.65 0.00 40.82 1.40
2789 5853 1.450134 CAGTGGGCTGCTGCGATTA 60.450 57.895 9.65 0.00 40.82 1.75
2790 5854 2.749044 CAGTGGGCTGCTGCGATT 60.749 61.111 9.65 0.00 40.82 3.34
2791 5855 3.677284 CTCAGTGGGCTGCTGCGAT 62.677 63.158 9.65 0.00 42.29 4.58
2792 5856 4.383861 CTCAGTGGGCTGCTGCGA 62.384 66.667 9.65 0.00 42.29 5.10
2794 5858 4.719106 AGCTCAGTGGGCTGCTGC 62.719 66.667 19.04 7.10 42.29 5.25
2795 5859 2.033757 AAGCTCAGTGGGCTGCTG 59.966 61.111 20.65 0.00 42.29 4.41
2796 5860 2.222727 AGAAGCTCAGTGGGCTGCT 61.223 57.895 20.86 20.86 40.58 4.24
2797 5861 1.744741 GAGAAGCTCAGTGGGCTGC 60.745 63.158 20.65 18.28 42.29 5.25
2798 5862 1.447489 CGAGAAGCTCAGTGGGCTG 60.447 63.158 20.65 1.16 43.87 4.85
2799 5863 1.882989 GACGAGAAGCTCAGTGGGCT 61.883 60.000 13.10 13.10 42.31 5.19
2800 5864 1.446966 GACGAGAAGCTCAGTGGGC 60.447 63.158 6.98 6.98 0.00 5.36
2801 5865 0.318441 TTGACGAGAAGCTCAGTGGG 59.682 55.000 0.00 0.00 0.00 4.61
2802 5866 2.064762 CTTTGACGAGAAGCTCAGTGG 58.935 52.381 0.00 0.00 0.00 4.00
2803 5867 2.064762 CCTTTGACGAGAAGCTCAGTG 58.935 52.381 0.00 0.00 0.00 3.66
2804 5868 1.606737 GCCTTTGACGAGAAGCTCAGT 60.607 52.381 0.00 0.00 0.00 3.41
2805 5869 1.074752 GCCTTTGACGAGAAGCTCAG 58.925 55.000 0.00 0.00 0.00 3.35
2806 5870 0.392706 TGCCTTTGACGAGAAGCTCA 59.607 50.000 0.00 0.00 0.00 4.26
2807 5871 1.074752 CTGCCTTTGACGAGAAGCTC 58.925 55.000 0.00 0.00 0.00 4.09
2808 5872 0.952984 GCTGCCTTTGACGAGAAGCT 60.953 55.000 0.00 0.00 0.00 3.74
2809 5873 1.499502 GCTGCCTTTGACGAGAAGC 59.500 57.895 0.00 0.00 0.00 3.86
2810 5874 0.321122 AGGCTGCCTTTGACGAGAAG 60.321 55.000 17.22 0.00 0.00 2.85
2811 5875 0.603707 CAGGCTGCCTTTGACGAGAA 60.604 55.000 20.79 0.00 0.00 2.87
2812 5876 1.004560 CAGGCTGCCTTTGACGAGA 60.005 57.895 20.79 0.00 0.00 4.04
2813 5877 1.294659 GACAGGCTGCCTTTGACGAG 61.295 60.000 20.79 8.51 0.00 4.18
2814 5878 1.301716 GACAGGCTGCCTTTGACGA 60.302 57.895 20.79 0.00 0.00 4.20
2815 5879 1.572085 CTGACAGGCTGCCTTTGACG 61.572 60.000 20.79 10.11 0.00 4.35
2816 5880 1.239968 CCTGACAGGCTGCCTTTGAC 61.240 60.000 20.79 10.85 0.00 3.18
2817 5881 1.073722 CCTGACAGGCTGCCTTTGA 59.926 57.895 20.79 6.06 0.00 2.69
2818 5882 3.677527 CCTGACAGGCTGCCTTTG 58.322 61.111 20.79 12.71 0.00 2.77



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.