Multiple sequence alignment - TraesCS5D01G370600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G370600 chr5D 100.000 3536 0 0 1 3536 445379581 445376046 0.000000e+00 6530.0
1 TraesCS5D01G370600 chr5D 89.719 1673 136 12 874 2535 445319944 445318297 0.000000e+00 2104.0
2 TraesCS5D01G370600 chr5D 95.064 466 20 3 3072 3536 309139675 309140138 0.000000e+00 730.0
3 TraesCS5D01G370600 chr5D 94.850 466 23 1 3072 3536 93731375 93730910 0.000000e+00 726.0
4 TraesCS5D01G370600 chr5D 94.839 465 23 1 3072 3535 49228108 49227644 0.000000e+00 725.0
5 TraesCS5D01G370600 chr5D 88.810 420 31 5 460 875 445320397 445319990 5.270000e-138 501.0
6 TraesCS5D01G370600 chr5D 81.633 441 40 25 1 408 445320838 445320406 9.460000e-86 327.0
7 TraesCS5D01G370600 chr5D 80.294 340 48 15 2585 2911 445318212 445317879 4.560000e-59 239.0
8 TraesCS5D01G370600 chr5B 89.160 2417 162 41 574 2933 542983286 542980913 0.000000e+00 2920.0
9 TraesCS5D01G370600 chr5B 89.316 1666 155 9 876 2535 542953690 542952042 0.000000e+00 2069.0
10 TraesCS5D01G370600 chr5B 84.902 914 80 25 1 875 542954632 542953738 0.000000e+00 870.0
11 TraesCS5D01G370600 chr5B 76.568 303 45 21 2724 3011 542951659 542951368 3.680000e-30 143.0
12 TraesCS5D01G370600 chr5B 89.899 99 10 0 1 99 542983586 542983488 1.030000e-25 128.0
13 TraesCS5D01G370600 chr5A 94.153 1334 61 7 663 1980 562992464 562991132 0.000000e+00 2015.0
14 TraesCS5D01G370600 chr5A 94.384 1104 42 5 1964 3067 562977354 562976271 0.000000e+00 1677.0
15 TraesCS5D01G370600 chr5A 88.241 978 87 11 874 1848 562893612 562892660 0.000000e+00 1144.0
16 TraesCS5D01G370600 chr5A 94.277 629 28 5 1 624 562993086 562992461 0.000000e+00 955.0
17 TraesCS5D01G370600 chr5A 89.383 697 71 1 1846 2539 562892459 562891763 0.000000e+00 874.0
18 TraesCS5D01G370600 chr5A 83.801 926 76 23 1 879 562894553 562893655 0.000000e+00 811.0
19 TraesCS5D01G370600 chr5A 79.059 425 61 23 2585 2995 562891682 562891272 2.090000e-67 267.0
20 TraesCS5D01G370600 chr5A 82.955 88 12 3 2980 3065 211436329 211436415 3.790000e-10 76.8
21 TraesCS5D01G370600 chr2A 76.532 1534 324 24 1007 2530 2876210 2877717 0.000000e+00 806.0
22 TraesCS5D01G370600 chr2A 89.394 66 6 1 3000 3065 745788352 745788288 8.140000e-12 82.4
23 TraesCS5D01G370600 chr2B 76.377 1452 325 14 1098 2540 6914673 6913231 0.000000e+00 765.0
24 TraesCS5D01G370600 chr2B 76.171 1452 328 14 1098 2540 6827211 6825769 0.000000e+00 749.0
25 TraesCS5D01G370600 chr2B 76.214 1442 323 16 1098 2529 6779233 6777802 0.000000e+00 745.0
26 TraesCS5D01G370600 chr2B 75.811 1542 324 34 1009 2530 31047842 31049354 0.000000e+00 736.0
27 TraesCS5D01G370600 chr2B 75.651 1536 340 20 1009 2530 30990188 30988673 0.000000e+00 734.0
28 TraesCS5D01G370600 chr2B 93.846 65 3 1 3001 3065 694936967 694937030 2.910000e-16 97.1
29 TraesCS5D01G370600 chr2B 88.889 72 2 5 2998 3065 232263140 232263209 2.260000e-12 84.2
30 TraesCS5D01G370600 chr2D 76.536 1449 308 24 1098 2530 2512182 2510750 0.000000e+00 763.0
31 TraesCS5D01G370600 chr2D 95.279 466 20 2 3072 3535 180502249 180502714 0.000000e+00 737.0
32 TraesCS5D01G370600 chr2D 77.414 642 133 11 1100 1735 2237463 2238098 4.310000e-99 372.0
33 TraesCS5D01G370600 chr6A 95.279 466 20 2 3072 3536 503317907 503318371 0.000000e+00 737.0
34 TraesCS5D01G370600 chr6A 89.744 78 5 3 2990 3065 57686042 57686118 2.910000e-16 97.1
35 TraesCS5D01G370600 chr1D 95.064 466 22 1 3072 3536 381247972 381248437 0.000000e+00 732.0
36 TraesCS5D01G370600 chr7D 94.839 465 22 2 3072 3535 178302559 178303022 0.000000e+00 725.0
37 TraesCS5D01G370600 chr7D 94.850 466 21 3 3072 3536 256125291 256125754 0.000000e+00 725.0
38 TraesCS5D01G370600 chr7D 94.850 466 21 3 3072 3536 568428489 568428952 0.000000e+00 725.0
39 TraesCS5D01G370600 chr4B 77.036 1289 277 15 1250 2530 2277877 2276600 0.000000e+00 723.0
40 TraesCS5D01G370600 chr4B 88.158 76 8 1 2990 3065 290360719 290360793 4.860000e-14 89.8
41 TraesCS5D01G370600 chr3B 94.203 69 3 1 2998 3065 188866020 188866088 1.740000e-18 104.0
42 TraesCS5D01G370600 chr3B 86.207 87 8 4 2982 3065 762378395 762378480 1.350000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G370600 chr5D 445376046 445379581 3535 True 6530.000000 6530 100.000000 1 3536 1 chr5D.!!$R3 3535
1 TraesCS5D01G370600 chr5D 445317879 445320838 2959 True 792.750000 2104 85.114000 1 2911 4 chr5D.!!$R4 2910
2 TraesCS5D01G370600 chr5B 542980913 542983586 2673 True 1524.000000 2920 89.529500 1 2933 2 chr5B.!!$R2 2932
3 TraesCS5D01G370600 chr5B 542951368 542954632 3264 True 1027.333333 2069 83.595333 1 3011 3 chr5B.!!$R1 3010
4 TraesCS5D01G370600 chr5A 562976271 562977354 1083 True 1677.000000 1677 94.384000 1964 3067 1 chr5A.!!$R1 1103
5 TraesCS5D01G370600 chr5A 562991132 562993086 1954 True 1485.000000 2015 94.215000 1 1980 2 chr5A.!!$R3 1979
6 TraesCS5D01G370600 chr5A 562891272 562894553 3281 True 774.000000 1144 85.121000 1 2995 4 chr5A.!!$R2 2994
7 TraesCS5D01G370600 chr2A 2876210 2877717 1507 False 806.000000 806 76.532000 1007 2530 1 chr2A.!!$F1 1523
8 TraesCS5D01G370600 chr2B 6913231 6914673 1442 True 765.000000 765 76.377000 1098 2540 1 chr2B.!!$R3 1442
9 TraesCS5D01G370600 chr2B 6825769 6827211 1442 True 749.000000 749 76.171000 1098 2540 1 chr2B.!!$R2 1442
10 TraesCS5D01G370600 chr2B 6777802 6779233 1431 True 745.000000 745 76.214000 1098 2529 1 chr2B.!!$R1 1431
11 TraesCS5D01G370600 chr2B 31047842 31049354 1512 False 736.000000 736 75.811000 1009 2530 1 chr2B.!!$F1 1521
12 TraesCS5D01G370600 chr2B 30988673 30990188 1515 True 734.000000 734 75.651000 1009 2530 1 chr2B.!!$R4 1521
13 TraesCS5D01G370600 chr2D 2510750 2512182 1432 True 763.000000 763 76.536000 1098 2530 1 chr2D.!!$R1 1432
14 TraesCS5D01G370600 chr2D 2237463 2238098 635 False 372.000000 372 77.414000 1100 1735 1 chr2D.!!$F1 635
15 TraesCS5D01G370600 chr4B 2276600 2277877 1277 True 723.000000 723 77.036000 1250 2530 1 chr4B.!!$R1 1280

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 684 0.252479 CAGAGTTGAGCTGGATGCCT 59.748 55.000 0.0 0.0 44.23 4.75 F
660 750 0.750249 TCTGTCGTCTGTTCCAGCAA 59.250 50.000 0.0 0.0 0.00 3.91 F
1992 2415 1.483415 GCCCAGAACCCTAACATCGTA 59.517 52.381 0.0 0.0 0.00 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 2391 0.543410 TGTTAGGGTTCTGGGCGAGA 60.543 55.0 0.00 0.0 0.00 4.04 R
2124 2550 1.183030 TATGCGCTGGCGGGTATAGT 61.183 55.0 16.61 0.0 44.10 2.12 R
3483 4173 0.033601 AAACACCAGGGCACTGTTGA 60.034 50.0 21.58 0.0 39.26 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 1.080995 TTGCGCAAAACTGTTGGCAC 61.081 50.000 22.78 7.94 32.64 5.01
143 168 2.383442 ACGTATATCCTGGCCTCTGT 57.617 50.000 3.32 0.00 0.00 3.41
235 262 9.985730 ACTCAAATTCTGCTTGAATATTTTCAA 57.014 25.926 10.37 10.37 46.88 2.69
357 398 1.071385 GGATTCTGCAGTCGATGGGAT 59.929 52.381 14.67 0.00 0.00 3.85
430 476 8.028938 ACGATGATAGCTTTGCTTTTTGTTTAT 58.971 29.630 0.00 0.00 40.44 1.40
469 516 8.328864 GTCATCGGTTTTATTCATTCACTCTAC 58.671 37.037 0.00 0.00 0.00 2.59
552 638 1.308128 ATCCACAGGCCAGGGATGA 60.308 57.895 18.75 0.69 39.87 2.92
553 639 0.920763 ATCCACAGGCCAGGGATGAA 60.921 55.000 18.75 0.00 39.87 2.57
598 684 0.252479 CAGAGTTGAGCTGGATGCCT 59.748 55.000 0.00 0.00 44.23 4.75
660 750 0.750249 TCTGTCGTCTGTTCCAGCAA 59.250 50.000 0.00 0.00 0.00 3.91
673 763 4.158384 GTTCCAGCAACAACATTCATACG 58.842 43.478 0.00 0.00 34.76 3.06
719 815 1.540797 GCAGCAGCCCAAAAACAATGA 60.541 47.619 0.00 0.00 33.58 2.57
833 931 5.528870 ACGATACAGAACGCATGATATTCA 58.471 37.500 0.00 0.00 0.00 2.57
988 1177 1.714787 TCCTCCCTACACCACACTAGT 59.285 52.381 0.00 0.00 0.00 2.57
1064 1260 2.778299 CCTTTACTTGTACCTGCTGCA 58.222 47.619 0.88 0.88 0.00 4.41
1721 1926 5.653255 ATGAGGTGGCTAAATATTGGTCT 57.347 39.130 0.00 0.00 0.00 3.85
1968 2391 6.408548 CGACCCTGCCATGGATATTCTATAAT 60.409 42.308 18.40 0.00 0.00 1.28
1992 2415 1.483415 GCCCAGAACCCTAACATCGTA 59.517 52.381 0.00 0.00 0.00 3.43
2124 2550 3.075148 CACCTTGTACGAGACTCTCAGA 58.925 50.000 12.02 0.00 0.00 3.27
2133 2559 3.061322 CGAGACTCTCAGACTATACCCG 58.939 54.545 6.86 0.00 0.00 5.28
2333 2759 2.159366 AGCTCAAGAATGTACCGTCTCG 60.159 50.000 0.00 0.00 0.00 4.04
2562 3031 4.112634 TGCCCTCTTGTCTTAAAATGGT 57.887 40.909 0.00 0.00 0.00 3.55
2567 3036 5.278957 CCCTCTTGTCTTAAAATGGTTGTGG 60.279 44.000 0.00 0.00 0.00 4.17
2648 3150 2.831685 TATTCACAGCAACGAGTGGT 57.168 45.000 0.00 0.00 38.97 4.16
2696 3200 3.350219 AATCAGTTATGGCTTGGACGT 57.650 42.857 0.00 0.00 0.00 4.34
2869 3554 6.880529 ACAATGCCCTCCTTTTTGAAAATATG 59.119 34.615 0.00 0.00 0.00 1.78
2902 3587 4.176271 AGCAAGCTGAACTGTTTGTTTTC 58.824 39.130 0.00 0.00 39.30 2.29
2903 3588 4.082026 AGCAAGCTGAACTGTTTGTTTTCT 60.082 37.500 0.00 0.00 39.30 2.52
3067 3757 2.820787 TGCCCGTCCGTCATTAAAATTT 59.179 40.909 0.00 0.00 0.00 1.82
3068 3758 3.175929 GCCCGTCCGTCATTAAAATTTG 58.824 45.455 0.00 0.00 0.00 2.32
3069 3759 3.175929 CCCGTCCGTCATTAAAATTTGC 58.824 45.455 0.00 0.00 0.00 3.68
3070 3760 3.119637 CCCGTCCGTCATTAAAATTTGCT 60.120 43.478 0.00 0.00 0.00 3.91
3071 3761 4.481463 CCGTCCGTCATTAAAATTTGCTT 58.519 39.130 0.00 0.00 0.00 3.91
3072 3762 4.323336 CCGTCCGTCATTAAAATTTGCTTG 59.677 41.667 0.00 0.00 0.00 4.01
3073 3763 4.915085 CGTCCGTCATTAAAATTTGCTTGT 59.085 37.500 0.00 0.00 0.00 3.16
3074 3764 5.164196 CGTCCGTCATTAAAATTTGCTTGTG 60.164 40.000 0.00 0.00 0.00 3.33
3075 3765 5.918011 GTCCGTCATTAAAATTTGCTTGTGA 59.082 36.000 0.00 0.00 0.00 3.58
3076 3766 6.586082 GTCCGTCATTAAAATTTGCTTGTGAT 59.414 34.615 0.00 0.00 0.00 3.06
3077 3767 7.116233 GTCCGTCATTAAAATTTGCTTGTGATT 59.884 33.333 0.00 0.00 0.00 2.57
3078 3768 7.655328 TCCGTCATTAAAATTTGCTTGTGATTT 59.345 29.630 0.00 0.00 0.00 2.17
3079 3769 7.951565 CCGTCATTAAAATTTGCTTGTGATTTC 59.048 33.333 0.00 0.00 0.00 2.17
3080 3770 8.702438 CGTCATTAAAATTTGCTTGTGATTTCT 58.298 29.630 0.00 0.00 0.00 2.52
3082 3772 9.761504 TCATTAAAATTTGCTTGTGATTTCTCA 57.238 25.926 0.00 0.00 0.00 3.27
3085 3775 6.849588 AAATTTGCTTGTGATTTCTCAACC 57.150 33.333 0.00 0.00 31.85 3.77
3086 3776 4.998671 TTTGCTTGTGATTTCTCAACCA 57.001 36.364 0.00 0.00 31.85 3.67
3087 3777 4.998671 TTGCTTGTGATTTCTCAACCAA 57.001 36.364 1.10 1.10 31.85 3.67
3088 3778 4.572985 TGCTTGTGATTTCTCAACCAAG 57.427 40.909 0.00 0.00 38.00 3.61
3089 3779 3.953612 TGCTTGTGATTTCTCAACCAAGT 59.046 39.130 0.00 0.00 37.60 3.16
3090 3780 4.402155 TGCTTGTGATTTCTCAACCAAGTT 59.598 37.500 0.00 0.00 37.60 2.66
3091 3781 5.105392 TGCTTGTGATTTCTCAACCAAGTTT 60.105 36.000 0.00 0.00 37.60 2.66
3092 3782 6.096141 TGCTTGTGATTTCTCAACCAAGTTTA 59.904 34.615 0.00 0.00 37.60 2.01
3093 3783 6.638468 GCTTGTGATTTCTCAACCAAGTTTAG 59.362 38.462 0.00 0.00 37.60 1.85
3094 3784 7.639113 TTGTGATTTCTCAACCAAGTTTAGT 57.361 32.000 0.00 0.00 31.85 2.24
3095 3785 7.026631 TGTGATTTCTCAACCAAGTTTAGTG 57.973 36.000 0.00 0.00 31.85 2.74
3096 3786 5.915196 GTGATTTCTCAACCAAGTTTAGTGC 59.085 40.000 0.00 0.00 31.85 4.40
3097 3787 5.592282 TGATTTCTCAACCAAGTTTAGTGCA 59.408 36.000 0.00 0.00 0.00 4.57
3098 3788 6.265196 TGATTTCTCAACCAAGTTTAGTGCAT 59.735 34.615 0.00 0.00 0.00 3.96
3099 3789 6.463995 TTTCTCAACCAAGTTTAGTGCATT 57.536 33.333 0.00 0.00 0.00 3.56
3100 3790 5.437289 TCTCAACCAAGTTTAGTGCATTG 57.563 39.130 0.00 0.00 0.00 2.82
3101 3791 4.278170 TCTCAACCAAGTTTAGTGCATTGG 59.722 41.667 12.00 12.00 46.20 3.16
3102 3792 4.211125 TCAACCAAGTTTAGTGCATTGGA 58.789 39.130 18.92 0.00 44.04 3.53
3103 3793 4.278170 TCAACCAAGTTTAGTGCATTGGAG 59.722 41.667 18.92 11.64 44.04 3.86
3104 3794 2.558359 ACCAAGTTTAGTGCATTGGAGC 59.442 45.455 18.92 0.00 44.04 4.70
3105 3795 2.557924 CCAAGTTTAGTGCATTGGAGCA 59.442 45.455 8.54 0.00 44.04 4.26
3126 3816 5.908106 GCATGTGCTTGTAGTTCAAATTTG 58.092 37.500 12.15 12.15 38.21 2.32
3127 3817 5.691305 GCATGTGCTTGTAGTTCAAATTTGA 59.309 36.000 16.91 16.91 38.21 2.69
3128 3818 6.200665 GCATGTGCTTGTAGTTCAAATTTGAA 59.799 34.615 26.01 26.01 40.28 2.69
3129 3819 7.095523 GCATGTGCTTGTAGTTCAAATTTGAAT 60.096 33.333 30.63 22.05 42.37 2.57
3147 3837 8.967664 ATTTGAATTATGCACATAAAATGCCT 57.032 26.923 7.14 0.00 42.69 4.75
3149 3839 8.870160 TTGAATTATGCACATAAAATGCCTAC 57.130 30.769 7.14 0.00 42.69 3.18
3150 3840 8.005192 TGAATTATGCACATAAAATGCCTACA 57.995 30.769 7.14 0.00 42.69 2.74
3151 3841 8.473219 TGAATTATGCACATAAAATGCCTACAA 58.527 29.630 7.14 0.00 42.69 2.41
3152 3842 9.311916 GAATTATGCACATAAAATGCCTACAAA 57.688 29.630 7.14 0.00 42.69 2.83
3153 3843 9.664332 AATTATGCACATAAAATGCCTACAAAA 57.336 25.926 7.14 0.00 42.69 2.44
3154 3844 9.835389 ATTATGCACATAAAATGCCTACAAAAT 57.165 25.926 7.14 0.00 42.69 1.82
3155 3845 7.775397 ATGCACATAAAATGCCTACAAAATC 57.225 32.000 0.00 0.00 42.69 2.17
3156 3846 6.105333 TGCACATAAAATGCCTACAAAATCC 58.895 36.000 0.00 0.00 42.69 3.01
3157 3847 6.105333 GCACATAAAATGCCTACAAAATCCA 58.895 36.000 0.00 0.00 37.08 3.41
3158 3848 6.256321 GCACATAAAATGCCTACAAAATCCAG 59.744 38.462 0.00 0.00 37.08 3.86
3159 3849 7.322664 CACATAAAATGCCTACAAAATCCAGT 58.677 34.615 0.00 0.00 0.00 4.00
3160 3850 7.818930 CACATAAAATGCCTACAAAATCCAGTT 59.181 33.333 0.00 0.00 0.00 3.16
3161 3851 9.030452 ACATAAAATGCCTACAAAATCCAGTTA 57.970 29.630 0.00 0.00 0.00 2.24
3162 3852 9.868277 CATAAAATGCCTACAAAATCCAGTTAA 57.132 29.630 0.00 0.00 0.00 2.01
3164 3854 8.776376 AAAATGCCTACAAAATCCAGTTAATG 57.224 30.769 0.00 0.00 0.00 1.90
3165 3855 7.480760 AATGCCTACAAAATCCAGTTAATGT 57.519 32.000 0.00 0.00 0.00 2.71
3166 3856 8.588290 AATGCCTACAAAATCCAGTTAATGTA 57.412 30.769 0.00 0.00 0.00 2.29
3167 3857 8.766994 ATGCCTACAAAATCCAGTTAATGTAT 57.233 30.769 0.00 0.00 0.00 2.29
3168 3858 9.860650 ATGCCTACAAAATCCAGTTAATGTATA 57.139 29.630 0.00 0.00 0.00 1.47
3169 3859 9.688091 TGCCTACAAAATCCAGTTAATGTATAA 57.312 29.630 0.00 0.00 0.00 0.98
3188 3878 0.466543 AAAAAGGCCAAACGAACCCC 59.533 50.000 5.01 0.00 0.00 4.95
3189 3879 1.740332 AAAAGGCCAAACGAACCCCG 61.740 55.000 5.01 0.00 45.44 5.73
3190 3880 2.627839 AAAGGCCAAACGAACCCCGA 62.628 55.000 5.01 0.00 41.76 5.14
3191 3881 2.595172 GGCCAAACGAACCCCGAA 60.595 61.111 0.00 0.00 41.76 4.30
3192 3882 2.194889 GGCCAAACGAACCCCGAAA 61.195 57.895 0.00 0.00 41.76 3.46
3193 3883 1.734748 GCCAAACGAACCCCGAAAA 59.265 52.632 0.00 0.00 41.76 2.29
3194 3884 0.102663 GCCAAACGAACCCCGAAAAA 59.897 50.000 0.00 0.00 41.76 1.94
3195 3885 1.269883 GCCAAACGAACCCCGAAAAAT 60.270 47.619 0.00 0.00 41.76 1.82
3196 3886 2.803852 GCCAAACGAACCCCGAAAAATT 60.804 45.455 0.00 0.00 41.76 1.82
3197 3887 3.054166 CCAAACGAACCCCGAAAAATTC 58.946 45.455 0.00 0.00 41.76 2.17
3198 3888 3.054166 CAAACGAACCCCGAAAAATTCC 58.946 45.455 0.00 0.00 41.76 3.01
3199 3889 1.984066 ACGAACCCCGAAAAATTCCA 58.016 45.000 0.00 0.00 41.76 3.53
3200 3890 2.308690 ACGAACCCCGAAAAATTCCAA 58.691 42.857 0.00 0.00 41.76 3.53
3201 3891 2.295070 ACGAACCCCGAAAAATTCCAAG 59.705 45.455 0.00 0.00 41.76 3.61
3202 3892 2.554893 CGAACCCCGAAAAATTCCAAGA 59.445 45.455 0.00 0.00 41.76 3.02
3203 3893 3.192633 CGAACCCCGAAAAATTCCAAGAT 59.807 43.478 0.00 0.00 41.76 2.40
3204 3894 4.321675 CGAACCCCGAAAAATTCCAAGATT 60.322 41.667 0.00 0.00 41.76 2.40
3205 3895 5.106078 CGAACCCCGAAAAATTCCAAGATTA 60.106 40.000 0.00 0.00 41.76 1.75
3206 3896 6.570764 CGAACCCCGAAAAATTCCAAGATTAA 60.571 38.462 0.00 0.00 41.76 1.40
3207 3897 6.673839 ACCCCGAAAAATTCCAAGATTAAA 57.326 33.333 0.00 0.00 0.00 1.52
3208 3898 6.460781 ACCCCGAAAAATTCCAAGATTAAAC 58.539 36.000 0.00 0.00 0.00 2.01
3209 3899 6.042208 ACCCCGAAAAATTCCAAGATTAAACA 59.958 34.615 0.00 0.00 0.00 2.83
3210 3900 6.367695 CCCCGAAAAATTCCAAGATTAAACAC 59.632 38.462 0.00 0.00 0.00 3.32
3211 3901 6.926272 CCCGAAAAATTCCAAGATTAAACACA 59.074 34.615 0.00 0.00 0.00 3.72
3212 3902 7.439655 CCCGAAAAATTCCAAGATTAAACACAA 59.560 33.333 0.00 0.00 0.00 3.33
3213 3903 8.272866 CCGAAAAATTCCAAGATTAAACACAAC 58.727 33.333 0.00 0.00 0.00 3.32
3214 3904 8.812329 CGAAAAATTCCAAGATTAAACACAACA 58.188 29.630 0.00 0.00 0.00 3.33
3215 3905 9.914923 GAAAAATTCCAAGATTAAACACAACAC 57.085 29.630 0.00 0.00 0.00 3.32
3216 3906 9.665719 AAAAATTCCAAGATTAAACACAACACT 57.334 25.926 0.00 0.00 0.00 3.55
3217 3907 8.871686 AAATTCCAAGATTAAACACAACACTC 57.128 30.769 0.00 0.00 0.00 3.51
3218 3908 6.385649 TTCCAAGATTAAACACAACACTCC 57.614 37.500 0.00 0.00 0.00 3.85
3219 3909 5.690865 TCCAAGATTAAACACAACACTCCT 58.309 37.500 0.00 0.00 0.00 3.69
3220 3910 5.530915 TCCAAGATTAAACACAACACTCCTG 59.469 40.000 0.00 0.00 0.00 3.86
3221 3911 5.299279 CCAAGATTAAACACAACACTCCTGT 59.701 40.000 0.00 0.00 0.00 4.00
3222 3912 6.183360 CCAAGATTAAACACAACACTCCTGTT 60.183 38.462 0.00 0.00 41.61 3.16
3234 3924 5.290493 ACACTCCTGTTGTTCTATGTTGA 57.710 39.130 0.00 0.00 0.00 3.18
3235 3925 5.057149 ACACTCCTGTTGTTCTATGTTGAC 58.943 41.667 0.00 0.00 0.00 3.18
3236 3926 5.056480 CACTCCTGTTGTTCTATGTTGACA 58.944 41.667 0.00 0.00 0.00 3.58
3237 3927 5.050091 CACTCCTGTTGTTCTATGTTGACAC 60.050 44.000 0.00 0.00 0.00 3.67
3238 3928 5.163301 ACTCCTGTTGTTCTATGTTGACACT 60.163 40.000 0.00 0.00 0.00 3.55
3239 3929 6.041637 ACTCCTGTTGTTCTATGTTGACACTA 59.958 38.462 0.00 0.00 0.00 2.74
3240 3930 6.455647 TCCTGTTGTTCTATGTTGACACTAG 58.544 40.000 0.00 0.00 0.00 2.57
3241 3931 6.266786 TCCTGTTGTTCTATGTTGACACTAGA 59.733 38.462 0.00 0.00 0.00 2.43
3242 3932 6.929049 CCTGTTGTTCTATGTTGACACTAGAA 59.071 38.462 0.00 9.76 0.00 2.10
3243 3933 7.441157 CCTGTTGTTCTATGTTGACACTAGAAA 59.559 37.037 0.00 6.21 34.29 2.52
3244 3934 8.902540 TGTTGTTCTATGTTGACACTAGAAAT 57.097 30.769 0.00 0.00 34.29 2.17
3245 3935 9.337396 TGTTGTTCTATGTTGACACTAGAAATT 57.663 29.630 0.00 0.00 34.29 1.82
3269 3959 7.401484 TTTTTAAAAGCAATAAGAGGCAACG 57.599 32.000 0.14 0.00 46.39 4.10
3270 3960 3.575965 AAAAGCAATAAGAGGCAACGG 57.424 42.857 0.00 0.00 46.39 4.44
3271 3961 2.489938 AAGCAATAAGAGGCAACGGA 57.510 45.000 0.00 0.00 46.39 4.69
3272 3962 2.717639 AGCAATAAGAGGCAACGGAT 57.282 45.000 0.00 0.00 46.39 4.18
3273 3963 3.838244 AGCAATAAGAGGCAACGGATA 57.162 42.857 0.00 0.00 46.39 2.59
3274 3964 4.357918 AGCAATAAGAGGCAACGGATAT 57.642 40.909 0.00 0.00 46.39 1.63
3275 3965 4.718961 AGCAATAAGAGGCAACGGATATT 58.281 39.130 0.00 0.00 46.39 1.28
3276 3966 4.516698 AGCAATAAGAGGCAACGGATATTG 59.483 41.667 0.00 0.00 46.39 1.90
3277 3967 4.275936 GCAATAAGAGGCAACGGATATTGT 59.724 41.667 0.00 0.00 46.39 2.71
3278 3968 5.560953 GCAATAAGAGGCAACGGATATTGTC 60.561 44.000 0.00 0.00 46.39 3.18
3279 3969 2.622064 AGAGGCAACGGATATTGTCC 57.378 50.000 0.00 0.00 44.10 4.02
3280 3970 1.141053 AGAGGCAACGGATATTGTCCC 59.859 52.381 0.00 0.00 44.77 4.46
3286 3976 1.370064 CGGATATTGTCCCGTCCCC 59.630 63.158 0.00 0.00 44.77 4.81
3287 3977 1.404479 CGGATATTGTCCCGTCCCCA 61.404 60.000 0.00 0.00 44.77 4.96
3288 3978 0.841289 GGATATTGTCCCGTCCCCAA 59.159 55.000 0.00 0.00 41.50 4.12
3289 3979 1.213430 GGATATTGTCCCGTCCCCAAA 59.787 52.381 0.00 0.00 41.50 3.28
3290 3980 2.572290 GATATTGTCCCGTCCCCAAAG 58.428 52.381 0.00 0.00 0.00 2.77
3291 3981 0.621609 TATTGTCCCGTCCCCAAAGG 59.378 55.000 0.00 0.00 0.00 3.11
3292 3982 1.432023 ATTGTCCCGTCCCCAAAGGT 61.432 55.000 0.00 0.00 36.75 3.50
3293 3983 2.033602 GTCCCGTCCCCAAAGGTG 59.966 66.667 0.00 0.00 36.75 4.00
3294 3984 3.253838 TCCCGTCCCCAAAGGTGG 61.254 66.667 0.00 0.00 45.53 4.61
3295 3985 3.576259 CCCGTCCCCAAAGGTGGT 61.576 66.667 0.00 0.00 44.30 4.16
3296 3986 2.225596 CCCGTCCCCAAAGGTGGTA 61.226 63.158 0.00 0.00 44.30 3.25
3297 3987 1.002990 CCGTCCCCAAAGGTGGTAC 60.003 63.158 0.00 0.00 44.30 3.34
3298 3988 1.756024 CGTCCCCAAAGGTGGTACA 59.244 57.895 0.00 0.00 44.30 2.90
3299 3989 0.326927 CGTCCCCAAAGGTGGTACAT 59.673 55.000 0.00 0.00 44.30 2.29
3300 3990 1.271707 CGTCCCCAAAGGTGGTACATT 60.272 52.381 0.00 0.00 44.30 2.71
3301 3991 2.443416 GTCCCCAAAGGTGGTACATTC 58.557 52.381 0.00 0.00 44.30 2.67
3302 3992 1.356398 TCCCCAAAGGTGGTACATTCC 59.644 52.381 0.00 0.00 44.30 3.01
3303 3993 1.618616 CCCCAAAGGTGGTACATTCCC 60.619 57.143 0.00 0.00 44.30 3.97
3304 3994 1.357761 CCCAAAGGTGGTACATTCCCT 59.642 52.381 0.00 0.00 44.30 4.20
3305 3995 2.578940 CCCAAAGGTGGTACATTCCCTA 59.421 50.000 0.00 0.00 44.30 3.53
3306 3996 3.204382 CCCAAAGGTGGTACATTCCCTAT 59.796 47.826 0.00 0.00 44.30 2.57
3307 3997 4.461198 CCAAAGGTGGTACATTCCCTATC 58.539 47.826 0.00 0.00 44.52 2.08
3308 3998 4.127171 CAAAGGTGGTACATTCCCTATCG 58.873 47.826 0.00 0.00 44.52 2.92
3309 3999 3.323774 AGGTGGTACATTCCCTATCGA 57.676 47.619 0.00 0.00 44.52 3.59
3310 4000 3.649843 AGGTGGTACATTCCCTATCGAA 58.350 45.455 0.00 0.00 44.52 3.71
3311 4001 4.035112 AGGTGGTACATTCCCTATCGAAA 58.965 43.478 0.00 0.00 44.52 3.46
3312 4002 4.124970 GGTGGTACATTCCCTATCGAAAC 58.875 47.826 0.00 0.00 44.52 2.78
3313 4003 4.124970 GTGGTACATTCCCTATCGAAACC 58.875 47.826 0.00 0.00 44.52 3.27
3314 4004 3.775866 TGGTACATTCCCTATCGAAACCA 59.224 43.478 0.00 0.00 31.00 3.67
3315 4005 4.410883 TGGTACATTCCCTATCGAAACCAT 59.589 41.667 0.00 0.00 29.32 3.55
3316 4006 4.995487 GGTACATTCCCTATCGAAACCATC 59.005 45.833 0.00 0.00 0.00 3.51
3317 4007 4.771114 ACATTCCCTATCGAAACCATCA 57.229 40.909 0.00 0.00 0.00 3.07
3318 4008 5.310409 ACATTCCCTATCGAAACCATCAT 57.690 39.130 0.00 0.00 0.00 2.45
3319 4009 5.065914 ACATTCCCTATCGAAACCATCATG 58.934 41.667 0.00 0.00 0.00 3.07
3320 4010 3.126001 TCCCTATCGAAACCATCATGC 57.874 47.619 0.00 0.00 0.00 4.06
3321 4011 2.705658 TCCCTATCGAAACCATCATGCT 59.294 45.455 0.00 0.00 0.00 3.79
3322 4012 3.136443 TCCCTATCGAAACCATCATGCTT 59.864 43.478 0.00 0.00 0.00 3.91
3323 4013 3.251729 CCCTATCGAAACCATCATGCTTG 59.748 47.826 0.00 0.00 0.00 4.01
3324 4014 3.879295 CCTATCGAAACCATCATGCTTGT 59.121 43.478 0.00 0.00 0.00 3.16
3325 4015 4.336433 CCTATCGAAACCATCATGCTTGTT 59.664 41.667 0.00 0.00 0.00 2.83
3326 4016 3.557577 TCGAAACCATCATGCTTGTTG 57.442 42.857 0.00 1.83 0.00 3.33
3327 4017 2.884012 TCGAAACCATCATGCTTGTTGT 59.116 40.909 9.15 0.00 0.00 3.32
3328 4018 2.981805 CGAAACCATCATGCTTGTTGTG 59.018 45.455 9.15 4.57 0.00 3.33
3329 4019 3.304592 CGAAACCATCATGCTTGTTGTGA 60.305 43.478 9.15 0.00 0.00 3.58
3330 4020 3.928727 AACCATCATGCTTGTTGTGAG 57.071 42.857 9.15 0.00 0.00 3.51
3331 4021 3.144657 ACCATCATGCTTGTTGTGAGA 57.855 42.857 9.15 0.00 0.00 3.27
3332 4022 3.489355 ACCATCATGCTTGTTGTGAGAA 58.511 40.909 9.15 0.00 0.00 2.87
3333 4023 3.504906 ACCATCATGCTTGTTGTGAGAAG 59.495 43.478 9.15 0.00 0.00 2.85
3341 4031 5.223225 GCTTGTTGTGAGAAGCTTATACC 57.777 43.478 0.00 0.00 45.80 2.73
3342 4032 4.095036 GCTTGTTGTGAGAAGCTTATACCC 59.905 45.833 0.00 0.00 45.80 3.69
3343 4033 4.901197 TGTTGTGAGAAGCTTATACCCA 57.099 40.909 0.00 0.00 0.00 4.51
3344 4034 5.235850 TGTTGTGAGAAGCTTATACCCAA 57.764 39.130 0.00 0.00 0.00 4.12
3345 4035 5.626142 TGTTGTGAGAAGCTTATACCCAAA 58.374 37.500 0.00 0.00 0.00 3.28
3346 4036 5.472137 TGTTGTGAGAAGCTTATACCCAAAC 59.528 40.000 0.00 0.00 0.00 2.93
3347 4037 4.585879 TGTGAGAAGCTTATACCCAAACC 58.414 43.478 0.00 0.00 0.00 3.27
3348 4038 4.288626 TGTGAGAAGCTTATACCCAAACCT 59.711 41.667 0.00 0.00 0.00 3.50
3349 4039 4.876679 GTGAGAAGCTTATACCCAAACCTC 59.123 45.833 0.00 0.00 0.00 3.85
3350 4040 4.080526 TGAGAAGCTTATACCCAAACCTCC 60.081 45.833 0.00 0.00 0.00 4.30
3351 4041 4.112331 AGAAGCTTATACCCAAACCTCCT 58.888 43.478 0.00 0.00 0.00 3.69
3352 4042 4.164413 AGAAGCTTATACCCAAACCTCCTC 59.836 45.833 0.00 0.00 0.00 3.71
3353 4043 3.460825 AGCTTATACCCAAACCTCCTCA 58.539 45.455 0.00 0.00 0.00 3.86
3354 4044 3.850173 AGCTTATACCCAAACCTCCTCAA 59.150 43.478 0.00 0.00 0.00 3.02
3355 4045 4.291249 AGCTTATACCCAAACCTCCTCAAA 59.709 41.667 0.00 0.00 0.00 2.69
3356 4046 5.044105 AGCTTATACCCAAACCTCCTCAAAT 60.044 40.000 0.00 0.00 0.00 2.32
3357 4047 5.067805 GCTTATACCCAAACCTCCTCAAATG 59.932 44.000 0.00 0.00 0.00 2.32
3358 4048 2.309136 ACCCAAACCTCCTCAAATGG 57.691 50.000 0.00 0.00 0.00 3.16
3359 4049 1.560505 CCCAAACCTCCTCAAATGGG 58.439 55.000 0.00 0.00 41.38 4.00
3360 4050 2.603075 CCAAACCTCCTCAAATGGGA 57.397 50.000 0.00 0.00 0.00 4.37
3361 4051 2.171003 CCAAACCTCCTCAAATGGGAC 58.829 52.381 0.00 0.00 0.00 4.46
3376 4066 3.444703 TGGGACAAAATTTTCACCACG 57.555 42.857 18.55 4.36 31.92 4.94
3377 4067 3.024547 TGGGACAAAATTTTCACCACGA 58.975 40.909 18.55 5.44 31.92 4.35
3378 4068 3.181485 TGGGACAAAATTTTCACCACGAC 60.181 43.478 18.55 7.24 31.92 4.34
3379 4069 3.181485 GGGACAAAATTTTCACCACGACA 60.181 43.478 18.55 0.00 0.00 4.35
3380 4070 4.500716 GGGACAAAATTTTCACCACGACAT 60.501 41.667 18.55 0.00 0.00 3.06
3381 4071 4.444056 GGACAAAATTTTCACCACGACATG 59.556 41.667 14.39 0.00 0.00 3.21
3382 4072 5.004922 ACAAAATTTTCACCACGACATGT 57.995 34.783 0.00 0.00 0.00 3.21
3383 4073 5.415221 ACAAAATTTTCACCACGACATGTT 58.585 33.333 0.00 0.00 0.00 2.71
3384 4074 5.290643 ACAAAATTTTCACCACGACATGTTG 59.709 36.000 11.78 11.78 0.00 3.33
3385 4075 4.909696 AATTTTCACCACGACATGTTGA 57.090 36.364 20.26 6.58 0.00 3.18
3386 4076 5.452078 AATTTTCACCACGACATGTTGAT 57.548 34.783 20.26 1.34 0.00 2.57
3387 4077 3.894782 TTTCACCACGACATGTTGATG 57.105 42.857 20.26 13.72 35.49 3.07
3388 4078 1.155889 TCACCACGACATGTTGATGC 58.844 50.000 20.26 0.00 32.14 3.91
3389 4079 0.168788 CACCACGACATGTTGATGCC 59.831 55.000 20.26 0.00 32.14 4.40
3390 4080 1.298157 ACCACGACATGTTGATGCCG 61.298 55.000 20.26 10.32 40.91 5.69
3391 4081 1.226101 CACGACATGTTGATGCCGC 60.226 57.895 20.26 0.00 38.89 6.53
3392 4082 1.375908 ACGACATGTTGATGCCGCT 60.376 52.632 20.26 0.00 38.89 5.52
3393 4083 1.349627 CGACATGTTGATGCCGCTC 59.650 57.895 7.36 0.00 28.25 5.03
3394 4084 1.723870 GACATGTTGATGCCGCTCC 59.276 57.895 0.00 0.00 32.14 4.70
3395 4085 1.002257 ACATGTTGATGCCGCTCCA 60.002 52.632 0.00 0.00 32.14 3.86
3396 4086 0.394762 ACATGTTGATGCCGCTCCAT 60.395 50.000 0.00 0.00 32.14 3.41
3397 4087 0.309922 CATGTTGATGCCGCTCCATC 59.690 55.000 6.53 6.53 41.51 3.51
3401 4091 3.921257 TGATGCCGCTCCATCATAG 57.079 52.632 10.87 0.00 44.79 2.23
3402 4092 0.321034 TGATGCCGCTCCATCATAGC 60.321 55.000 10.87 0.00 44.79 2.97
3403 4093 0.321034 GATGCCGCTCCATCATAGCA 60.321 55.000 8.15 0.00 40.96 3.49
3404 4094 0.327259 ATGCCGCTCCATCATAGCAT 59.673 50.000 0.00 0.00 40.08 3.79
3405 4095 0.604511 TGCCGCTCCATCATAGCATG 60.605 55.000 0.00 0.00 40.08 4.06
3406 4096 1.919956 GCCGCTCCATCATAGCATGC 61.920 60.000 10.51 10.51 40.08 4.06
3407 4097 1.303799 CCGCTCCATCATAGCATGCC 61.304 60.000 15.66 0.00 40.08 4.40
3408 4098 0.604511 CGCTCCATCATAGCATGCCA 60.605 55.000 15.66 0.00 40.08 4.92
3409 4099 1.612676 GCTCCATCATAGCATGCCAA 58.387 50.000 15.66 2.91 39.83 4.52
3410 4100 1.540267 GCTCCATCATAGCATGCCAAG 59.460 52.381 15.66 4.13 39.83 3.61
3411 4101 2.860009 CTCCATCATAGCATGCCAAGT 58.140 47.619 15.66 0.00 0.00 3.16
3412 4102 3.220110 CTCCATCATAGCATGCCAAGTT 58.780 45.455 15.66 0.00 0.00 2.66
3413 4103 3.634504 TCCATCATAGCATGCCAAGTTT 58.365 40.909 15.66 0.00 0.00 2.66
3414 4104 3.633525 TCCATCATAGCATGCCAAGTTTC 59.366 43.478 15.66 0.00 0.00 2.78
3415 4105 3.382227 CCATCATAGCATGCCAAGTTTCA 59.618 43.478 15.66 0.00 0.00 2.69
3416 4106 4.038763 CCATCATAGCATGCCAAGTTTCAT 59.961 41.667 15.66 0.00 0.00 2.57
3417 4107 4.642445 TCATAGCATGCCAAGTTTCATG 57.358 40.909 15.66 9.44 42.08 3.07
3418 4108 4.271661 TCATAGCATGCCAAGTTTCATGA 58.728 39.130 15.66 7.73 41.82 3.07
3419 4109 4.705991 TCATAGCATGCCAAGTTTCATGAA 59.294 37.500 15.66 3.38 41.82 2.57
3420 4110 5.361571 TCATAGCATGCCAAGTTTCATGAAT 59.638 36.000 15.66 0.00 41.82 2.57
3421 4111 4.546829 AGCATGCCAAGTTTCATGAATT 57.453 36.364 15.66 0.00 41.82 2.17
3422 4112 4.901868 AGCATGCCAAGTTTCATGAATTT 58.098 34.783 15.66 4.50 41.82 1.82
3423 4113 4.933400 AGCATGCCAAGTTTCATGAATTTC 59.067 37.500 15.66 3.55 41.82 2.17
3424 4114 4.691685 GCATGCCAAGTTTCATGAATTTCA 59.308 37.500 9.40 0.75 41.82 2.69
3425 4115 5.179742 GCATGCCAAGTTTCATGAATTTCAA 59.820 36.000 9.40 0.00 41.82 2.69
3426 4116 6.293516 GCATGCCAAGTTTCATGAATTTCAAA 60.294 34.615 9.40 0.00 41.82 2.69
3427 4117 6.601741 TGCCAAGTTTCATGAATTTCAAAC 57.398 33.333 9.40 3.22 0.00 2.93
3428 4118 5.233902 TGCCAAGTTTCATGAATTTCAAACG 59.766 36.000 9.40 0.00 34.54 3.60
3429 4119 5.461737 GCCAAGTTTCATGAATTTCAAACGA 59.538 36.000 9.40 0.00 34.54 3.85
3430 4120 6.346040 GCCAAGTTTCATGAATTTCAAACGAG 60.346 38.462 9.40 1.94 34.54 4.18
3431 4121 6.697019 CCAAGTTTCATGAATTTCAAACGAGT 59.303 34.615 9.40 0.00 34.54 4.18
3432 4122 7.222611 CCAAGTTTCATGAATTTCAAACGAGTT 59.777 33.333 9.40 0.00 34.54 3.01
3433 4123 8.594687 CAAGTTTCATGAATTTCAAACGAGTTT 58.405 29.630 9.40 0.00 34.54 2.66
3434 4124 8.702163 AGTTTCATGAATTTCAAACGAGTTTT 57.298 26.923 9.40 0.00 34.54 2.43
3435 4125 8.594687 AGTTTCATGAATTTCAAACGAGTTTTG 58.405 29.630 9.40 0.00 45.38 2.44
3436 4126 7.462109 TTCATGAATTTCAAACGAGTTTTGG 57.538 32.000 3.38 0.00 44.30 3.28
3437 4127 6.800543 TCATGAATTTCAAACGAGTTTTGGA 58.199 32.000 2.68 0.00 44.30 3.53
3438 4128 7.432869 TCATGAATTTCAAACGAGTTTTGGAT 58.567 30.769 2.68 0.00 44.30 3.41
3439 4129 7.925483 TCATGAATTTCAAACGAGTTTTGGATT 59.075 29.630 2.68 0.39 44.30 3.01
3440 4130 8.550376 CATGAATTTCAAACGAGTTTTGGATTT 58.450 29.630 2.68 0.00 44.30 2.17
3441 4131 9.757227 ATGAATTTCAAACGAGTTTTGGATTTA 57.243 25.926 2.68 0.00 44.30 1.40
3442 4132 9.026074 TGAATTTCAAACGAGTTTTGGATTTAC 57.974 29.630 0.00 0.00 44.30 2.01
3443 4133 9.244799 GAATTTCAAACGAGTTTTGGATTTACT 57.755 29.630 0.00 0.00 44.30 2.24
3445 4135 9.893305 ATTTCAAACGAGTTTTGGATTTACTAG 57.107 29.630 0.00 0.00 44.30 2.57
3446 4136 8.665643 TTCAAACGAGTTTTGGATTTACTAGA 57.334 30.769 0.00 0.00 44.30 2.43
3447 4137 8.665643 TCAAACGAGTTTTGGATTTACTAGAA 57.334 30.769 0.00 0.00 44.30 2.10
3448 4138 9.280174 TCAAACGAGTTTTGGATTTACTAGAAT 57.720 29.630 0.00 0.00 44.30 2.40
3449 4139 9.893305 CAAACGAGTTTTGGATTTACTAGAATT 57.107 29.630 0.00 0.00 40.98 2.17
3475 4165 9.757227 TTAAAAACCAGGTATCTCAATGTTTTG 57.243 29.630 0.00 0.00 35.38 2.44
3476 4166 5.391312 AACCAGGTATCTCAATGTTTTGC 57.609 39.130 0.00 0.00 32.61 3.68
3477 4167 3.763897 ACCAGGTATCTCAATGTTTTGCC 59.236 43.478 0.00 0.00 32.61 4.52
3478 4168 3.181497 CCAGGTATCTCAATGTTTTGCCG 60.181 47.826 0.00 0.00 32.61 5.69
3479 4169 3.689161 CAGGTATCTCAATGTTTTGCCGA 59.311 43.478 0.00 0.00 32.61 5.54
3480 4170 3.689649 AGGTATCTCAATGTTTTGCCGAC 59.310 43.478 0.00 0.00 32.61 4.79
3481 4171 3.438781 GGTATCTCAATGTTTTGCCGACA 59.561 43.478 0.00 0.00 32.61 4.35
3482 4172 4.083003 GGTATCTCAATGTTTTGCCGACAA 60.083 41.667 0.00 0.00 32.61 3.18
3483 4173 4.789012 ATCTCAATGTTTTGCCGACAAT 57.211 36.364 0.00 0.00 35.21 2.71
3484 4174 4.159377 TCTCAATGTTTTGCCGACAATC 57.841 40.909 0.00 0.00 35.21 2.67
3485 4175 3.567585 TCTCAATGTTTTGCCGACAATCA 59.432 39.130 0.00 0.00 35.21 2.57
3486 4176 4.037327 TCTCAATGTTTTGCCGACAATCAA 59.963 37.500 0.00 0.00 35.21 2.57
3487 4177 4.047822 TCAATGTTTTGCCGACAATCAAC 58.952 39.130 0.00 0.00 35.21 3.18
3488 4178 3.724508 ATGTTTTGCCGACAATCAACA 57.275 38.095 4.52 4.52 39.55 3.33
3489 4179 3.077229 TGTTTTGCCGACAATCAACAG 57.923 42.857 0.00 0.00 33.61 3.16
3490 4180 2.425312 TGTTTTGCCGACAATCAACAGT 59.575 40.909 0.00 0.00 33.61 3.55
3491 4181 2.772568 TTTGCCGACAATCAACAGTG 57.227 45.000 0.00 0.00 35.21 3.66
3492 4182 0.310543 TTGCCGACAATCAACAGTGC 59.689 50.000 0.00 0.00 0.00 4.40
3493 4183 1.210155 GCCGACAATCAACAGTGCC 59.790 57.895 0.00 0.00 0.00 5.01
3494 4184 1.875963 CCGACAATCAACAGTGCCC 59.124 57.895 0.00 0.00 0.00 5.36
3495 4185 0.606401 CCGACAATCAACAGTGCCCT 60.606 55.000 0.00 0.00 0.00 5.19
3496 4186 0.518636 CGACAATCAACAGTGCCCTG 59.481 55.000 0.00 0.00 44.68 4.45
3497 4187 0.883833 GACAATCAACAGTGCCCTGG 59.116 55.000 0.05 0.00 43.36 4.45
3498 4188 0.185901 ACAATCAACAGTGCCCTGGT 59.814 50.000 0.05 0.00 43.36 4.00
3503 4193 2.503775 AACAGTGCCCTGGTGTTTG 58.496 52.632 0.05 0.00 43.36 2.93
3504 4194 0.033601 AACAGTGCCCTGGTGTTTGA 60.034 50.000 0.05 0.00 43.36 2.69
3505 4195 0.033601 ACAGTGCCCTGGTGTTTGAA 60.034 50.000 0.05 0.00 43.36 2.69
3506 4196 1.110442 CAGTGCCCTGGTGTTTGAAA 58.890 50.000 0.00 0.00 34.90 2.69
3507 4197 1.688197 CAGTGCCCTGGTGTTTGAAAT 59.312 47.619 0.00 0.00 34.90 2.17
3508 4198 2.102925 CAGTGCCCTGGTGTTTGAAATT 59.897 45.455 0.00 0.00 34.90 1.82
3509 4199 2.365293 AGTGCCCTGGTGTTTGAAATTC 59.635 45.455 0.00 0.00 0.00 2.17
3510 4200 2.102252 GTGCCCTGGTGTTTGAAATTCA 59.898 45.455 0.00 0.00 0.00 2.57
3511 4201 2.971330 TGCCCTGGTGTTTGAAATTCAT 59.029 40.909 0.00 0.00 0.00 2.57
3512 4202 3.390639 TGCCCTGGTGTTTGAAATTCATT 59.609 39.130 0.00 0.00 0.00 2.57
3513 4203 3.996363 GCCCTGGTGTTTGAAATTCATTC 59.004 43.478 0.00 0.00 38.60 2.67
3514 4204 4.568956 CCCTGGTGTTTGAAATTCATTCC 58.431 43.478 0.00 0.00 37.22 3.01
3515 4205 4.563374 CCCTGGTGTTTGAAATTCATTCCC 60.563 45.833 0.00 0.00 37.22 3.97
3516 4206 4.040217 CCTGGTGTTTGAAATTCATTCCCA 59.960 41.667 0.00 0.79 37.22 4.37
3517 4207 5.280113 CCTGGTGTTTGAAATTCATTCCCAT 60.280 40.000 0.00 0.00 37.22 4.00
3518 4208 5.792741 TGGTGTTTGAAATTCATTCCCATC 58.207 37.500 0.00 0.00 37.22 3.51
3519 4209 5.543405 TGGTGTTTGAAATTCATTCCCATCT 59.457 36.000 0.00 0.00 37.22 2.90
3520 4210 6.101997 GGTGTTTGAAATTCATTCCCATCTC 58.898 40.000 0.00 0.00 37.22 2.75
3521 4211 6.071165 GGTGTTTGAAATTCATTCCCATCTCT 60.071 38.462 0.00 0.00 37.22 3.10
3522 4212 7.381323 GTGTTTGAAATTCATTCCCATCTCTT 58.619 34.615 0.00 0.00 37.22 2.85
3523 4213 7.543520 GTGTTTGAAATTCATTCCCATCTCTTC 59.456 37.037 0.00 0.00 37.22 2.87
3524 4214 6.780457 TTGAAATTCATTCCCATCTCTTCC 57.220 37.500 0.00 0.00 37.22 3.46
3525 4215 5.829986 TGAAATTCATTCCCATCTCTTCCA 58.170 37.500 0.00 0.00 37.22 3.53
3526 4216 6.437755 TGAAATTCATTCCCATCTCTTCCAT 58.562 36.000 0.00 0.00 37.22 3.41
3527 4217 6.322969 TGAAATTCATTCCCATCTCTTCCATG 59.677 38.462 0.00 0.00 37.22 3.66
3528 4218 3.870538 TCATTCCCATCTCTTCCATGG 57.129 47.619 4.97 4.97 40.67 3.66
3533 4223 1.516110 CCATCTCTTCCATGGGACCT 58.484 55.000 13.02 0.00 37.71 3.85
3534 4224 2.694397 CCATCTCTTCCATGGGACCTA 58.306 52.381 13.02 0.00 37.71 3.08
3535 4225 2.636893 CCATCTCTTCCATGGGACCTAG 59.363 54.545 13.02 3.17 37.71 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 8.567285 AAGAAAAATCATGGTTAGTAGGTGAG 57.433 34.615 0.00 0.00 0.00 3.51
143 168 4.220693 ACATGCATACCTGAGCACTTAA 57.779 40.909 0.00 0.00 44.49 1.85
235 262 2.811873 GCGGATCCAGCCATCTGTAAAT 60.812 50.000 13.41 0.00 38.66 1.40
357 398 5.298777 CCAAAAAGGCAAAAATGGATGTTGA 59.701 36.000 0.00 0.00 0.00 3.18
435 481 9.832445 AATGAATAAAACCGATGACTACACTAT 57.168 29.630 0.00 0.00 0.00 2.12
673 763 3.131396 CTGGAGTAGTGGACAACAACAC 58.869 50.000 0.00 0.00 37.86 3.32
719 815 2.161855 TCGTCACACGTATGGTACCTT 58.838 47.619 14.36 9.70 43.14 3.50
1064 1260 8.623030 GGTTATTTGATCTTCTACGACTAGACT 58.377 37.037 0.00 0.00 0.00 3.24
1721 1926 2.868044 GCTTCGTGGAGCTTTCTCTCAA 60.868 50.000 0.00 0.00 39.57 3.02
1968 2391 0.543410 TGTTAGGGTTCTGGGCGAGA 60.543 55.000 0.00 0.00 0.00 4.04
1992 2415 6.226787 GGAGAGTTCATTACGGATGATTGAT 58.773 40.000 4.83 0.00 44.01 2.57
2016 2439 1.337074 ACTTTGTGCGATGCAATTGGG 60.337 47.619 7.72 0.00 41.47 4.12
2124 2550 1.183030 TATGCGCTGGCGGGTATAGT 61.183 55.000 16.61 0.00 44.10 2.12
2133 2559 3.720193 CGCTCCATATGCGCTGGC 61.720 66.667 9.73 0.00 46.72 4.85
2544 2970 5.278957 CCCACAACCATTTTAAGACAAGAGG 60.279 44.000 0.00 0.00 0.00 3.69
2579 3081 6.711277 ACAAAGTATATGGACACACAGACAT 58.289 36.000 0.00 0.00 0.00 3.06
2696 3200 4.998671 TGGTTTCTGAGAACATTTGCAA 57.001 36.364 0.00 0.00 0.00 4.08
2762 3430 8.908903 TGCTTAATTTTCTGTTCTTTACCTTGA 58.091 29.630 0.00 0.00 0.00 3.02
2809 3477 7.425606 GGACATATCCATTCAATACCACAAAC 58.574 38.462 0.00 0.00 45.47 2.93
3068 3758 4.574599 ACTTGGTTGAGAAATCACAAGC 57.425 40.909 13.48 13.48 42.45 4.01
3069 3759 7.645340 CACTAAACTTGGTTGAGAAATCACAAG 59.355 37.037 0.00 0.00 40.66 3.16
3070 3760 7.479980 CACTAAACTTGGTTGAGAAATCACAA 58.520 34.615 2.17 0.00 29.16 3.33
3071 3761 6.459573 GCACTAAACTTGGTTGAGAAATCACA 60.460 38.462 2.17 0.00 29.16 3.58
3072 3762 5.915196 GCACTAAACTTGGTTGAGAAATCAC 59.085 40.000 2.17 0.00 29.16 3.06
3073 3763 5.592282 TGCACTAAACTTGGTTGAGAAATCA 59.408 36.000 2.17 0.00 29.16 2.57
3074 3764 6.072112 TGCACTAAACTTGGTTGAGAAATC 57.928 37.500 2.17 0.00 29.16 2.17
3075 3765 6.655078 ATGCACTAAACTTGGTTGAGAAAT 57.345 33.333 0.00 0.00 29.16 2.17
3076 3766 6.272318 CAATGCACTAAACTTGGTTGAGAAA 58.728 36.000 0.00 0.00 29.16 2.52
3077 3767 5.221224 CCAATGCACTAAACTTGGTTGAGAA 60.221 40.000 6.37 0.00 34.69 2.87
3078 3768 4.278170 CCAATGCACTAAACTTGGTTGAGA 59.722 41.667 6.37 0.00 34.69 3.27
3079 3769 4.278170 TCCAATGCACTAAACTTGGTTGAG 59.722 41.667 12.91 0.00 39.33 3.02
3080 3770 4.211125 TCCAATGCACTAAACTTGGTTGA 58.789 39.130 12.91 0.00 39.33 3.18
3081 3771 4.549458 CTCCAATGCACTAAACTTGGTTG 58.451 43.478 12.91 5.51 39.33 3.77
3082 3772 3.005791 GCTCCAATGCACTAAACTTGGTT 59.994 43.478 12.91 0.00 39.33 3.67
3083 3773 2.558359 GCTCCAATGCACTAAACTTGGT 59.442 45.455 12.91 0.00 39.33 3.67
3084 3774 2.557924 TGCTCCAATGCACTAAACTTGG 59.442 45.455 7.99 7.99 38.12 3.61
3085 3775 3.921119 TGCTCCAATGCACTAAACTTG 57.079 42.857 0.00 0.00 38.12 3.16
3086 3776 3.828451 ACATGCTCCAATGCACTAAACTT 59.172 39.130 0.00 0.00 46.33 2.66
3087 3777 3.192001 CACATGCTCCAATGCACTAAACT 59.808 43.478 0.00 0.00 46.33 2.66
3088 3778 3.504863 CACATGCTCCAATGCACTAAAC 58.495 45.455 0.00 0.00 46.33 2.01
3089 3779 2.094597 GCACATGCTCCAATGCACTAAA 60.095 45.455 0.00 0.00 46.33 1.85
3090 3780 1.473677 GCACATGCTCCAATGCACTAA 59.526 47.619 0.00 0.00 46.33 2.24
3091 3781 1.097232 GCACATGCTCCAATGCACTA 58.903 50.000 0.00 0.00 46.33 2.74
3092 3782 1.888018 GCACATGCTCCAATGCACT 59.112 52.632 0.00 0.00 46.33 4.40
3093 3783 4.489249 GCACATGCTCCAATGCAC 57.511 55.556 0.00 0.00 46.33 4.57
3101 3791 8.208015 TCAAATTTGAACTACAAGCACATGCTC 61.208 37.037 18.45 0.00 41.86 4.26
3102 3792 6.461370 TCAAATTTGAACTACAAGCACATGCT 60.461 34.615 18.45 0.00 43.47 3.79
3103 3793 5.691305 TCAAATTTGAACTACAAGCACATGC 59.309 36.000 18.45 0.00 39.77 4.06
3104 3794 7.697352 TTCAAATTTGAACTACAAGCACATG 57.303 32.000 26.01 0.00 41.88 3.21
3121 3811 9.398538 AGGCATTTTATGTGCATAATTCAAATT 57.601 25.926 5.58 0.00 44.25 1.82
3122 3812 8.967664 AGGCATTTTATGTGCATAATTCAAAT 57.032 26.923 5.58 1.07 44.25 2.32
3123 3813 9.311916 GTAGGCATTTTATGTGCATAATTCAAA 57.688 29.630 5.58 0.00 44.25 2.69
3124 3814 8.473219 TGTAGGCATTTTATGTGCATAATTCAA 58.527 29.630 5.58 0.00 44.25 2.69
3125 3815 8.005192 TGTAGGCATTTTATGTGCATAATTCA 57.995 30.769 5.58 0.00 44.25 2.57
3126 3816 8.870160 TTGTAGGCATTTTATGTGCATAATTC 57.130 30.769 5.58 0.00 44.25 2.17
3127 3817 9.664332 TTTTGTAGGCATTTTATGTGCATAATT 57.336 25.926 5.58 0.00 44.25 1.40
3128 3818 9.835389 ATTTTGTAGGCATTTTATGTGCATAAT 57.165 25.926 5.58 0.00 44.25 1.28
3129 3819 9.311916 GATTTTGTAGGCATTTTATGTGCATAA 57.688 29.630 0.00 0.90 44.25 1.90
3130 3820 7.925483 GGATTTTGTAGGCATTTTATGTGCATA 59.075 33.333 0.00 0.00 44.25 3.14
3131 3821 6.762661 GGATTTTGTAGGCATTTTATGTGCAT 59.237 34.615 0.00 0.00 44.25 3.96
3132 3822 6.105333 GGATTTTGTAGGCATTTTATGTGCA 58.895 36.000 0.29 0.00 44.25 4.57
3133 3823 6.105333 TGGATTTTGTAGGCATTTTATGTGC 58.895 36.000 0.00 0.00 41.78 4.57
3134 3824 7.322664 ACTGGATTTTGTAGGCATTTTATGTG 58.677 34.615 0.00 0.00 0.00 3.21
3135 3825 7.480760 ACTGGATTTTGTAGGCATTTTATGT 57.519 32.000 0.00 0.00 0.00 2.29
3136 3826 9.868277 TTAACTGGATTTTGTAGGCATTTTATG 57.132 29.630 0.00 0.00 0.00 1.90
3138 3828 9.868277 CATTAACTGGATTTTGTAGGCATTTTA 57.132 29.630 0.00 0.00 0.00 1.52
3139 3829 8.374743 ACATTAACTGGATTTTGTAGGCATTTT 58.625 29.630 0.00 0.00 0.00 1.82
3140 3830 7.906327 ACATTAACTGGATTTTGTAGGCATTT 58.094 30.769 0.00 0.00 0.00 2.32
3141 3831 7.480760 ACATTAACTGGATTTTGTAGGCATT 57.519 32.000 0.00 0.00 0.00 3.56
3142 3832 8.766994 ATACATTAACTGGATTTTGTAGGCAT 57.233 30.769 0.00 0.00 0.00 4.40
3143 3833 9.688091 TTATACATTAACTGGATTTTGTAGGCA 57.312 29.630 0.00 0.00 28.66 4.75
3169 3859 0.466543 GGGGTTCGTTTGGCCTTTTT 59.533 50.000 3.32 0.00 0.00 1.94
3170 3860 1.740332 CGGGGTTCGTTTGGCCTTTT 61.740 55.000 3.32 0.00 0.00 2.27
3171 3861 2.197605 CGGGGTTCGTTTGGCCTTT 61.198 57.895 3.32 0.00 0.00 3.11
3172 3862 2.596338 CGGGGTTCGTTTGGCCTT 60.596 61.111 3.32 0.00 0.00 4.35
3173 3863 2.627839 TTTCGGGGTTCGTTTGGCCT 62.628 55.000 3.32 0.00 40.32 5.19
3174 3864 1.736365 TTTTCGGGGTTCGTTTGGCC 61.736 55.000 0.00 0.00 40.32 5.36
3175 3865 0.102663 TTTTTCGGGGTTCGTTTGGC 59.897 50.000 0.00 0.00 40.32 4.52
3176 3866 2.804697 ATTTTTCGGGGTTCGTTTGG 57.195 45.000 0.00 0.00 40.32 3.28
3177 3867 3.054166 GGAATTTTTCGGGGTTCGTTTG 58.946 45.455 0.00 0.00 40.32 2.93
3178 3868 2.694109 TGGAATTTTTCGGGGTTCGTTT 59.306 40.909 0.00 0.00 40.32 3.60
3179 3869 2.308690 TGGAATTTTTCGGGGTTCGTT 58.691 42.857 0.00 0.00 40.32 3.85
3180 3870 1.984066 TGGAATTTTTCGGGGTTCGT 58.016 45.000 0.00 0.00 40.32 3.85
3181 3871 2.554893 TCTTGGAATTTTTCGGGGTTCG 59.445 45.455 0.00 0.00 40.90 3.95
3182 3872 4.801330 ATCTTGGAATTTTTCGGGGTTC 57.199 40.909 0.00 0.00 0.00 3.62
3183 3873 6.673839 TTAATCTTGGAATTTTTCGGGGTT 57.326 33.333 0.00 0.00 0.00 4.11
3184 3874 6.042208 TGTTTAATCTTGGAATTTTTCGGGGT 59.958 34.615 0.00 0.00 0.00 4.95
3185 3875 6.367695 GTGTTTAATCTTGGAATTTTTCGGGG 59.632 38.462 0.00 0.00 0.00 5.73
3186 3876 6.926272 TGTGTTTAATCTTGGAATTTTTCGGG 59.074 34.615 0.00 0.00 0.00 5.14
3187 3877 7.938563 TGTGTTTAATCTTGGAATTTTTCGG 57.061 32.000 0.00 0.00 0.00 4.30
3188 3878 8.812329 TGTTGTGTTTAATCTTGGAATTTTTCG 58.188 29.630 0.00 0.00 0.00 3.46
3189 3879 9.914923 GTGTTGTGTTTAATCTTGGAATTTTTC 57.085 29.630 0.00 0.00 0.00 2.29
3190 3880 9.665719 AGTGTTGTGTTTAATCTTGGAATTTTT 57.334 25.926 0.00 0.00 0.00 1.94
3191 3881 9.313118 GAGTGTTGTGTTTAATCTTGGAATTTT 57.687 29.630 0.00 0.00 0.00 1.82
3192 3882 7.926018 GGAGTGTTGTGTTTAATCTTGGAATTT 59.074 33.333 0.00 0.00 0.00 1.82
3193 3883 7.287696 AGGAGTGTTGTGTTTAATCTTGGAATT 59.712 33.333 0.00 0.00 0.00 2.17
3194 3884 6.777580 AGGAGTGTTGTGTTTAATCTTGGAAT 59.222 34.615 0.00 0.00 0.00 3.01
3195 3885 6.039270 CAGGAGTGTTGTGTTTAATCTTGGAA 59.961 38.462 0.00 0.00 0.00 3.53
3196 3886 5.530915 CAGGAGTGTTGTGTTTAATCTTGGA 59.469 40.000 0.00 0.00 0.00 3.53
3197 3887 5.299279 ACAGGAGTGTTGTGTTTAATCTTGG 59.701 40.000 0.00 0.00 30.30 3.61
3198 3888 6.377327 ACAGGAGTGTTGTGTTTAATCTTG 57.623 37.500 0.00 0.00 30.30 3.02
3212 3902 5.057149 GTCAACATAGAACAACAGGAGTGT 58.943 41.667 0.00 0.00 39.19 3.55
3213 3903 5.050091 GTGTCAACATAGAACAACAGGAGTG 60.050 44.000 0.00 0.00 0.00 3.51
3214 3904 5.057149 GTGTCAACATAGAACAACAGGAGT 58.943 41.667 0.00 0.00 0.00 3.85
3215 3905 5.300752 AGTGTCAACATAGAACAACAGGAG 58.699 41.667 0.00 0.00 0.00 3.69
3216 3906 5.290493 AGTGTCAACATAGAACAACAGGA 57.710 39.130 0.00 0.00 0.00 3.86
3217 3907 6.455647 TCTAGTGTCAACATAGAACAACAGG 58.544 40.000 0.00 0.00 0.00 4.00
3218 3908 7.946655 TTCTAGTGTCAACATAGAACAACAG 57.053 36.000 9.21 0.00 32.11 3.16
3219 3909 8.902540 ATTTCTAGTGTCAACATAGAACAACA 57.097 30.769 11.32 0.00 35.76 3.33
3245 3935 6.422400 CCGTTGCCTCTTATTGCTTTTAAAAA 59.578 34.615 1.66 0.00 0.00 1.94
3246 3936 5.923684 CCGTTGCCTCTTATTGCTTTTAAAA 59.076 36.000 0.00 0.00 0.00 1.52
3247 3937 5.241949 TCCGTTGCCTCTTATTGCTTTTAAA 59.758 36.000 0.00 0.00 0.00 1.52
3248 3938 4.762765 TCCGTTGCCTCTTATTGCTTTTAA 59.237 37.500 0.00 0.00 0.00 1.52
3249 3939 4.328536 TCCGTTGCCTCTTATTGCTTTTA 58.671 39.130 0.00 0.00 0.00 1.52
3250 3940 3.153919 TCCGTTGCCTCTTATTGCTTTT 58.846 40.909 0.00 0.00 0.00 2.27
3251 3941 2.790433 TCCGTTGCCTCTTATTGCTTT 58.210 42.857 0.00 0.00 0.00 3.51
3252 3942 2.489938 TCCGTTGCCTCTTATTGCTT 57.510 45.000 0.00 0.00 0.00 3.91
3253 3943 2.717639 ATCCGTTGCCTCTTATTGCT 57.282 45.000 0.00 0.00 0.00 3.91
3254 3944 4.275936 ACAATATCCGTTGCCTCTTATTGC 59.724 41.667 0.00 0.00 32.78 3.56
3255 3945 5.049405 GGACAATATCCGTTGCCTCTTATTG 60.049 44.000 0.00 0.00 37.88 1.90
3256 3946 5.063880 GGACAATATCCGTTGCCTCTTATT 58.936 41.667 0.00 0.00 37.88 1.40
3257 3947 4.642429 GGACAATATCCGTTGCCTCTTAT 58.358 43.478 0.00 0.00 37.88 1.73
3258 3948 4.067972 GGACAATATCCGTTGCCTCTTA 57.932 45.455 0.00 0.00 37.88 2.10
3259 3949 2.919228 GGACAATATCCGTTGCCTCTT 58.081 47.619 0.00 0.00 37.88 2.85
3260 3950 2.622064 GGACAATATCCGTTGCCTCT 57.378 50.000 0.00 0.00 37.88 3.69
3269 3959 5.888910 CCTTTGGGGACGGGACAATATCC 62.889 56.522 0.00 0.00 41.75 2.59
3270 3960 2.572290 CTTTGGGGACGGGACAATATC 58.428 52.381 0.00 0.00 0.00 1.63
3271 3961 1.214424 CCTTTGGGGACGGGACAATAT 59.786 52.381 0.00 0.00 37.23 1.28
3272 3962 0.621609 CCTTTGGGGACGGGACAATA 59.378 55.000 0.00 0.00 37.23 1.90
3273 3963 1.382629 CCTTTGGGGACGGGACAAT 59.617 57.895 0.00 0.00 37.23 2.71
3274 3964 2.079911 ACCTTTGGGGACGGGACAA 61.080 57.895 0.00 0.00 38.76 3.18
3275 3965 2.448931 ACCTTTGGGGACGGGACA 60.449 61.111 0.00 0.00 38.76 4.02
3276 3966 2.033602 CACCTTTGGGGACGGGAC 59.966 66.667 0.00 0.00 38.76 4.46
3277 3967 3.253838 CCACCTTTGGGGACGGGA 61.254 66.667 0.00 0.00 39.57 5.14
3286 3976 4.127171 CGATAGGGAATGTACCACCTTTG 58.873 47.826 0.00 0.00 34.59 2.77
3287 3977 4.035112 TCGATAGGGAATGTACCACCTTT 58.965 43.478 0.00 0.00 34.59 3.11
3288 3978 3.649843 TCGATAGGGAATGTACCACCTT 58.350 45.455 0.00 0.00 34.59 3.50
3289 3979 3.323774 TCGATAGGGAATGTACCACCT 57.676 47.619 0.00 0.00 37.13 4.00
3290 3980 4.124970 GTTTCGATAGGGAATGTACCACC 58.875 47.826 0.00 0.00 0.00 4.61
3291 3981 4.124970 GGTTTCGATAGGGAATGTACCAC 58.875 47.826 0.00 0.00 28.99 4.16
3292 3982 3.775866 TGGTTTCGATAGGGAATGTACCA 59.224 43.478 0.00 0.00 33.90 3.25
3293 3983 4.411256 TGGTTTCGATAGGGAATGTACC 57.589 45.455 0.00 0.00 0.00 3.34
3294 3984 5.607477 TGATGGTTTCGATAGGGAATGTAC 58.393 41.667 0.00 0.00 0.00 2.90
3295 3985 5.880164 TGATGGTTTCGATAGGGAATGTA 57.120 39.130 0.00 0.00 0.00 2.29
3296 3986 4.771114 TGATGGTTTCGATAGGGAATGT 57.229 40.909 0.00 0.00 0.00 2.71
3297 3987 4.083110 GCATGATGGTTTCGATAGGGAATG 60.083 45.833 0.00 0.00 0.00 2.67
3298 3988 4.074970 GCATGATGGTTTCGATAGGGAAT 58.925 43.478 0.00 0.00 0.00 3.01
3299 3989 3.136443 AGCATGATGGTTTCGATAGGGAA 59.864 43.478 0.00 0.00 0.00 3.97
3300 3990 2.705658 AGCATGATGGTTTCGATAGGGA 59.294 45.455 0.00 0.00 0.00 4.20
3301 3991 3.131709 AGCATGATGGTTTCGATAGGG 57.868 47.619 0.00 0.00 0.00 3.53
3302 3992 3.879295 ACAAGCATGATGGTTTCGATAGG 59.121 43.478 7.20 0.00 35.69 2.57
3303 3993 5.163723 ACAACAAGCATGATGGTTTCGATAG 60.164 40.000 7.20 0.00 35.69 2.08
3304 3994 4.699735 ACAACAAGCATGATGGTTTCGATA 59.300 37.500 7.20 0.00 35.69 2.92
3305 3995 3.507233 ACAACAAGCATGATGGTTTCGAT 59.493 39.130 7.20 0.00 35.69 3.59
3306 3996 2.884012 ACAACAAGCATGATGGTTTCGA 59.116 40.909 7.20 0.00 35.69 3.71
3307 3997 2.981805 CACAACAAGCATGATGGTTTCG 59.018 45.455 7.20 0.15 35.69 3.46
3308 3998 4.022935 TCTCACAACAAGCATGATGGTTTC 60.023 41.667 7.20 0.00 35.69 2.78
3309 3999 3.890756 TCTCACAACAAGCATGATGGTTT 59.109 39.130 7.20 0.00 35.69 3.27
3310 4000 3.489355 TCTCACAACAAGCATGATGGTT 58.511 40.909 3.70 3.70 38.82 3.67
3311 4001 3.144657 TCTCACAACAAGCATGATGGT 57.855 42.857 4.20 0.00 33.91 3.55
3312 4002 3.672511 GCTTCTCACAACAAGCATGATGG 60.673 47.826 4.20 0.00 43.87 3.51
3313 4003 3.190744 AGCTTCTCACAACAAGCATGATG 59.809 43.478 0.00 0.00 46.37 3.07
3314 4004 3.418995 AGCTTCTCACAACAAGCATGAT 58.581 40.909 0.00 0.00 46.37 2.45
3315 4005 2.854963 AGCTTCTCACAACAAGCATGA 58.145 42.857 0.00 0.00 46.37 3.07
3316 4006 3.637998 AAGCTTCTCACAACAAGCATG 57.362 42.857 6.44 0.00 46.37 4.06
3317 4007 5.355350 GGTATAAGCTTCTCACAACAAGCAT 59.645 40.000 0.00 0.00 46.37 3.79
3318 4008 4.695455 GGTATAAGCTTCTCACAACAAGCA 59.305 41.667 0.00 0.00 46.37 3.91
3319 4009 4.095036 GGGTATAAGCTTCTCACAACAAGC 59.905 45.833 0.00 0.00 44.63 4.01
3320 4010 5.245531 TGGGTATAAGCTTCTCACAACAAG 58.754 41.667 0.00 0.00 0.00 3.16
3321 4011 5.235850 TGGGTATAAGCTTCTCACAACAA 57.764 39.130 0.00 0.00 0.00 2.83
3322 4012 4.901197 TGGGTATAAGCTTCTCACAACA 57.099 40.909 0.00 0.34 0.00 3.33
3323 4013 5.106277 GGTTTGGGTATAAGCTTCTCACAAC 60.106 44.000 0.00 3.15 0.00 3.32
3324 4014 5.007682 GGTTTGGGTATAAGCTTCTCACAA 58.992 41.667 0.00 5.63 0.00 3.33
3325 4015 4.288626 AGGTTTGGGTATAAGCTTCTCACA 59.711 41.667 0.00 0.00 29.61 3.58
3326 4016 4.844884 AGGTTTGGGTATAAGCTTCTCAC 58.155 43.478 0.00 0.00 29.61 3.51
3327 4017 4.080526 GGAGGTTTGGGTATAAGCTTCTCA 60.081 45.833 0.00 0.00 33.80 3.27
3328 4018 4.164413 AGGAGGTTTGGGTATAAGCTTCTC 59.836 45.833 0.00 0.00 34.65 2.87
3329 4019 4.112331 AGGAGGTTTGGGTATAAGCTTCT 58.888 43.478 0.00 0.00 34.83 2.85
3330 4020 4.080526 TGAGGAGGTTTGGGTATAAGCTTC 60.081 45.833 0.00 0.00 33.80 3.86
3331 4021 3.850173 TGAGGAGGTTTGGGTATAAGCTT 59.150 43.478 3.48 3.48 33.80 3.74
3332 4022 3.460825 TGAGGAGGTTTGGGTATAAGCT 58.539 45.455 0.00 0.00 36.15 3.74
3333 4023 3.926058 TGAGGAGGTTTGGGTATAAGC 57.074 47.619 0.00 0.00 0.00 3.09
3334 4024 5.594317 CCATTTGAGGAGGTTTGGGTATAAG 59.406 44.000 0.00 0.00 0.00 1.73
3335 4025 5.515106 CCATTTGAGGAGGTTTGGGTATAA 58.485 41.667 0.00 0.00 0.00 0.98
3336 4026 4.079443 CCCATTTGAGGAGGTTTGGGTATA 60.079 45.833 0.00 0.00 39.17 1.47
3337 4027 3.309848 CCCATTTGAGGAGGTTTGGGTAT 60.310 47.826 0.00 0.00 39.17 2.73
3338 4028 2.042433 CCCATTTGAGGAGGTTTGGGTA 59.958 50.000 0.00 0.00 39.17 3.69
3339 4029 1.203174 CCCATTTGAGGAGGTTTGGGT 60.203 52.381 0.00 0.00 39.17 4.51
3340 4030 1.077005 TCCCATTTGAGGAGGTTTGGG 59.923 52.381 0.00 0.00 44.26 4.12
3341 4031 2.171003 GTCCCATTTGAGGAGGTTTGG 58.829 52.381 0.00 0.00 32.84 3.28
3342 4032 2.875296 TGTCCCATTTGAGGAGGTTTG 58.125 47.619 0.00 0.00 32.84 2.93
3343 4033 3.611025 TTGTCCCATTTGAGGAGGTTT 57.389 42.857 0.00 0.00 32.84 3.27
3344 4034 3.611025 TTTGTCCCATTTGAGGAGGTT 57.389 42.857 0.00 0.00 32.84 3.50
3345 4035 3.611025 TTTTGTCCCATTTGAGGAGGT 57.389 42.857 0.00 0.00 32.84 3.85
3346 4036 5.488262 AAATTTTGTCCCATTTGAGGAGG 57.512 39.130 0.00 0.00 32.84 4.30
3347 4037 6.424812 GTGAAAATTTTGTCCCATTTGAGGAG 59.575 38.462 8.47 0.00 32.84 3.69
3348 4038 6.287525 GTGAAAATTTTGTCCCATTTGAGGA 58.712 36.000 8.47 0.00 0.00 3.71
3349 4039 5.469760 GGTGAAAATTTTGTCCCATTTGAGG 59.530 40.000 8.47 0.00 0.00 3.86
3350 4040 6.018016 GTGGTGAAAATTTTGTCCCATTTGAG 60.018 38.462 8.47 0.00 0.00 3.02
3351 4041 5.819901 GTGGTGAAAATTTTGTCCCATTTGA 59.180 36.000 8.47 0.00 0.00 2.69
3352 4042 5.277250 CGTGGTGAAAATTTTGTCCCATTTG 60.277 40.000 8.47 2.87 0.00 2.32
3353 4043 4.813697 CGTGGTGAAAATTTTGTCCCATTT 59.186 37.500 8.47 0.00 0.00 2.32
3354 4044 4.100189 TCGTGGTGAAAATTTTGTCCCATT 59.900 37.500 8.47 0.00 0.00 3.16
3355 4045 3.639094 TCGTGGTGAAAATTTTGTCCCAT 59.361 39.130 8.47 0.00 0.00 4.00
3356 4046 3.024547 TCGTGGTGAAAATTTTGTCCCA 58.975 40.909 8.47 8.26 0.00 4.37
3357 4047 3.181485 TGTCGTGGTGAAAATTTTGTCCC 60.181 43.478 8.47 5.74 0.00 4.46
3358 4048 4.035278 TGTCGTGGTGAAAATTTTGTCC 57.965 40.909 8.47 10.54 0.00 4.02
3359 4049 5.040635 ACATGTCGTGGTGAAAATTTTGTC 58.959 37.500 8.47 1.00 0.00 3.18
3360 4050 5.004922 ACATGTCGTGGTGAAAATTTTGT 57.995 34.783 8.47 0.00 0.00 2.83
3361 4051 5.964887 AACATGTCGTGGTGAAAATTTTG 57.035 34.783 8.47 0.00 0.00 2.44
3371 4061 2.555123 GGCATCAACATGTCGTGGT 58.445 52.632 0.00 0.00 31.86 4.16
3376 4066 1.026182 TGGAGCGGCATCAACATGTC 61.026 55.000 0.00 0.00 31.86 3.06
3377 4067 0.394762 ATGGAGCGGCATCAACATGT 60.395 50.000 1.45 0.00 31.86 3.21
3378 4068 0.309922 GATGGAGCGGCATCAACATG 59.690 55.000 1.45 0.00 0.00 3.21
3379 4069 0.107066 TGATGGAGCGGCATCAACAT 60.107 50.000 1.45 0.00 35.19 2.71
3380 4070 0.107066 ATGATGGAGCGGCATCAACA 60.107 50.000 1.45 5.42 40.63 3.33
3381 4071 1.802960 CTATGATGGAGCGGCATCAAC 59.197 52.381 1.45 0.00 40.63 3.18
3382 4072 1.879372 GCTATGATGGAGCGGCATCAA 60.879 52.381 1.45 0.00 40.63 2.57
3383 4073 0.321034 GCTATGATGGAGCGGCATCA 60.321 55.000 1.45 3.13 41.37 3.07
3384 4074 0.321034 TGCTATGATGGAGCGGCATC 60.321 55.000 1.45 0.00 43.19 3.91
3385 4075 0.327259 ATGCTATGATGGAGCGGCAT 59.673 50.000 1.45 0.00 43.19 4.40
3386 4076 0.604511 CATGCTATGATGGAGCGGCA 60.605 55.000 1.45 0.00 43.19 5.69
3387 4077 1.919956 GCATGCTATGATGGAGCGGC 61.920 60.000 11.37 0.00 43.19 6.53
3388 4078 1.303799 GGCATGCTATGATGGAGCGG 61.304 60.000 18.92 0.00 43.19 5.52
3389 4079 0.604511 TGGCATGCTATGATGGAGCG 60.605 55.000 18.92 0.00 43.19 5.03
3390 4080 1.540267 CTTGGCATGCTATGATGGAGC 59.460 52.381 18.92 0.00 40.53 4.70
3391 4081 2.860009 ACTTGGCATGCTATGATGGAG 58.140 47.619 21.38 9.88 0.00 3.86
3392 4082 3.301794 AACTTGGCATGCTATGATGGA 57.698 42.857 21.38 0.00 0.00 3.41
3393 4083 3.382227 TGAAACTTGGCATGCTATGATGG 59.618 43.478 21.38 6.82 0.00 3.51
3394 4084 4.642445 TGAAACTTGGCATGCTATGATG 57.358 40.909 21.38 7.87 0.00 3.07
3395 4085 4.891168 TCATGAAACTTGGCATGCTATGAT 59.109 37.500 21.38 8.72 41.18 2.45
3396 4086 4.271661 TCATGAAACTTGGCATGCTATGA 58.728 39.130 21.38 10.10 41.18 2.15
3397 4087 4.642445 TCATGAAACTTGGCATGCTATG 57.358 40.909 18.92 16.34 41.18 2.23
3398 4088 5.864418 ATTCATGAAACTTGGCATGCTAT 57.136 34.783 18.92 0.00 41.18 2.97
3399 4089 5.664294 AATTCATGAAACTTGGCATGCTA 57.336 34.783 18.92 9.16 41.18 3.49
3400 4090 4.546829 AATTCATGAAACTTGGCATGCT 57.453 36.364 18.92 0.00 41.18 3.79
3401 4091 4.691685 TGAAATTCATGAAACTTGGCATGC 59.308 37.500 13.09 9.90 41.18 4.06
3402 4092 6.788684 TTGAAATTCATGAAACTTGGCATG 57.211 33.333 13.09 0.00 42.41 4.06
3403 4093 6.073657 CGTTTGAAATTCATGAAACTTGGCAT 60.074 34.615 13.09 0.00 0.00 4.40
3404 4094 5.233902 CGTTTGAAATTCATGAAACTTGGCA 59.766 36.000 13.09 3.31 0.00 4.92
3405 4095 5.461737 TCGTTTGAAATTCATGAAACTTGGC 59.538 36.000 13.09 0.80 0.00 4.52
3406 4096 6.697019 ACTCGTTTGAAATTCATGAAACTTGG 59.303 34.615 13.09 1.18 0.00 3.61
3407 4097 7.684062 ACTCGTTTGAAATTCATGAAACTTG 57.316 32.000 13.09 3.36 0.00 3.16
3408 4098 8.702163 AAACTCGTTTGAAATTCATGAAACTT 57.298 26.923 13.09 8.96 0.00 2.66
3409 4099 8.702163 AAAACTCGTTTGAAATTCATGAAACT 57.298 26.923 13.09 2.01 32.36 2.66
3423 4113 9.893305 AATTCTAGTAAATCCAAAACTCGTTTG 57.107 29.630 0.00 0.00 45.36 2.93
3449 4139 9.757227 CAAAACATTGAGATACCTGGTTTTTAA 57.243 29.630 3.84 0.00 35.51 1.52
3450 4140 7.870445 GCAAAACATTGAGATACCTGGTTTTTA 59.130 33.333 3.84 0.00 35.51 1.52
3451 4141 6.705825 GCAAAACATTGAGATACCTGGTTTTT 59.294 34.615 3.84 0.00 35.51 1.94
3452 4142 6.223120 GCAAAACATTGAGATACCTGGTTTT 58.777 36.000 3.84 0.00 37.43 2.43
3453 4143 5.279456 GGCAAAACATTGAGATACCTGGTTT 60.279 40.000 3.84 0.00 0.00 3.27
3454 4144 4.220602 GGCAAAACATTGAGATACCTGGTT 59.779 41.667 3.84 0.00 0.00 3.67
3455 4145 3.763897 GGCAAAACATTGAGATACCTGGT 59.236 43.478 4.05 4.05 0.00 4.00
3456 4146 3.181497 CGGCAAAACATTGAGATACCTGG 60.181 47.826 0.00 0.00 0.00 4.45
3457 4147 3.689161 TCGGCAAAACATTGAGATACCTG 59.311 43.478 0.00 0.00 0.00 4.00
3458 4148 3.689649 GTCGGCAAAACATTGAGATACCT 59.310 43.478 0.00 0.00 0.00 3.08
3459 4149 3.438781 TGTCGGCAAAACATTGAGATACC 59.561 43.478 0.00 0.00 0.00 2.73
3460 4150 4.678509 TGTCGGCAAAACATTGAGATAC 57.321 40.909 0.00 0.00 0.00 2.24
3461 4151 5.414144 TGATTGTCGGCAAAACATTGAGATA 59.586 36.000 6.51 0.00 38.21 1.98
3462 4152 4.218200 TGATTGTCGGCAAAACATTGAGAT 59.782 37.500 6.51 0.00 38.21 2.75
3463 4153 3.567585 TGATTGTCGGCAAAACATTGAGA 59.432 39.130 6.51 0.00 38.21 3.27
3464 4154 3.899734 TGATTGTCGGCAAAACATTGAG 58.100 40.909 6.51 0.00 38.21 3.02
3465 4155 3.998099 TGATTGTCGGCAAAACATTGA 57.002 38.095 6.51 0.00 38.21 2.57
3466 4156 3.801050 TGTTGATTGTCGGCAAAACATTG 59.199 39.130 14.32 0.00 38.21 2.82
3467 4157 4.050553 CTGTTGATTGTCGGCAAAACATT 58.949 39.130 17.62 0.00 35.82 2.71
3468 4158 3.068024 ACTGTTGATTGTCGGCAAAACAT 59.932 39.130 17.62 7.94 35.82 2.71
3469 4159 2.425312 ACTGTTGATTGTCGGCAAAACA 59.575 40.909 16.66 16.66 38.21 2.83
3470 4160 2.788786 CACTGTTGATTGTCGGCAAAAC 59.211 45.455 6.51 8.54 38.21 2.43
3471 4161 2.797792 GCACTGTTGATTGTCGGCAAAA 60.798 45.455 6.51 0.00 38.21 2.44
3472 4162 1.268999 GCACTGTTGATTGTCGGCAAA 60.269 47.619 6.51 0.00 38.21 3.68
3473 4163 0.310543 GCACTGTTGATTGTCGGCAA 59.689 50.000 4.23 4.23 39.16 4.52
3474 4164 1.514678 GGCACTGTTGATTGTCGGCA 61.515 55.000 0.00 0.00 0.00 5.69
3475 4165 1.210155 GGCACTGTTGATTGTCGGC 59.790 57.895 0.00 0.00 0.00 5.54
3476 4166 0.606401 AGGGCACTGTTGATTGTCGG 60.606 55.000 0.00 0.00 0.00 4.79
3477 4167 0.518636 CAGGGCACTGTTGATTGTCG 59.481 55.000 8.15 0.00 39.92 4.35
3478 4168 0.883833 CCAGGGCACTGTTGATTGTC 59.116 55.000 16.38 0.00 43.36 3.18
3479 4169 0.185901 ACCAGGGCACTGTTGATTGT 59.814 50.000 16.38 0.70 43.36 2.71
3480 4170 0.599558 CACCAGGGCACTGTTGATTG 59.400 55.000 16.38 0.00 39.26 2.67
3481 4171 0.185901 ACACCAGGGCACTGTTGATT 59.814 50.000 21.58 0.00 39.26 2.57
3482 4172 0.185901 AACACCAGGGCACTGTTGAT 59.814 50.000 21.58 5.28 39.26 2.57
3483 4173 0.033601 AAACACCAGGGCACTGTTGA 60.034 50.000 21.58 0.00 39.26 3.18
3484 4174 0.102844 CAAACACCAGGGCACTGTTG 59.897 55.000 16.38 14.47 42.27 3.33
3485 4175 0.033601 TCAAACACCAGGGCACTGTT 60.034 50.000 16.38 0.00 43.36 3.16
3486 4176 0.033601 TTCAAACACCAGGGCACTGT 60.034 50.000 16.38 0.00 43.36 3.55
3487 4177 1.110442 TTTCAAACACCAGGGCACTG 58.890 50.000 9.70 9.70 44.51 3.66
3488 4178 2.086610 ATTTCAAACACCAGGGCACT 57.913 45.000 0.00 0.00 0.00 4.40
3489 4179 2.102252 TGAATTTCAAACACCAGGGCAC 59.898 45.455 0.00 0.00 0.00 5.01
3490 4180 2.392662 TGAATTTCAAACACCAGGGCA 58.607 42.857 0.00 0.00 0.00 5.36
3491 4181 3.683365 ATGAATTTCAAACACCAGGGC 57.317 42.857 2.68 0.00 0.00 5.19
3492 4182 4.563374 GGGAATGAATTTCAAACACCAGGG 60.563 45.833 2.68 0.00 35.94 4.45
3493 4183 4.040217 TGGGAATGAATTTCAAACACCAGG 59.960 41.667 2.68 0.00 35.94 4.45
3494 4184 5.212532 TGGGAATGAATTTCAAACACCAG 57.787 39.130 2.68 0.00 35.94 4.00
3495 4185 5.543405 AGATGGGAATGAATTTCAAACACCA 59.457 36.000 2.68 9.89 35.94 4.17
3496 4186 6.041423 AGATGGGAATGAATTTCAAACACC 57.959 37.500 2.68 4.80 35.94 4.16
3497 4187 6.928520 AGAGATGGGAATGAATTTCAAACAC 58.071 36.000 2.68 2.74 35.94 3.32
3498 4188 7.309990 GGAAGAGATGGGAATGAATTTCAAACA 60.310 37.037 2.68 1.30 35.94 2.83
3499 4189 7.038048 GGAAGAGATGGGAATGAATTTCAAAC 58.962 38.462 2.68 0.93 35.94 2.93
3500 4190 6.725369 TGGAAGAGATGGGAATGAATTTCAAA 59.275 34.615 2.68 0.00 35.94 2.69
3501 4191 6.255287 TGGAAGAGATGGGAATGAATTTCAA 58.745 36.000 2.68 0.00 35.94 2.69
3502 4192 5.829986 TGGAAGAGATGGGAATGAATTTCA 58.170 37.500 0.75 0.75 35.94 2.69
3503 4193 6.239232 CCATGGAAGAGATGGGAATGAATTTC 60.239 42.308 5.56 0.00 37.33 2.17
3504 4194 5.601313 CCATGGAAGAGATGGGAATGAATTT 59.399 40.000 5.56 0.00 37.33 1.82
3505 4195 5.145564 CCATGGAAGAGATGGGAATGAATT 58.854 41.667 5.56 0.00 37.33 2.17
3506 4196 4.737578 CCATGGAAGAGATGGGAATGAAT 58.262 43.478 5.56 0.00 37.33 2.57
3507 4197 4.174704 CCATGGAAGAGATGGGAATGAA 57.825 45.455 5.56 0.00 37.33 2.57
3508 4198 3.870538 CCATGGAAGAGATGGGAATGA 57.129 47.619 5.56 0.00 37.33 2.57
3514 4204 1.516110 AGGTCCCATGGAAGAGATGG 58.484 55.000 15.22 0.00 40.25 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.