Multiple sequence alignment - TraesCS5D01G370300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G370300 chr5D 100.000 3788 0 0 1 3788 445305840 445309627 0.000000e+00 6996.0
1 TraesCS5D01G370300 chr5D 82.105 475 54 24 5 463 481124026 481124485 9.930000e-101 377.0
2 TraesCS5D01G370300 chr5A 94.802 2270 67 20 692 2946 562856072 562858305 0.000000e+00 3491.0
3 TraesCS5D01G370300 chr5A 96.000 450 14 4 3341 3788 562858891 562859338 0.000000e+00 728.0
4 TraesCS5D01G370300 chr5A 90.952 210 13 3 2948 3157 562858364 562858567 1.040000e-70 278.0
5 TraesCS5D01G370300 chr5B 96.026 2114 65 10 688 2795 542934639 542936739 0.000000e+00 3421.0
6 TraesCS5D01G370300 chr5B 92.181 908 35 13 2180 3059 542940539 542941438 0.000000e+00 1251.0
7 TraesCS5D01G370300 chr5B 84.867 641 56 23 3057 3676 542941501 542942121 3.240000e-170 608.0
8 TraesCS5D01G370300 chr5B 91.667 108 9 0 3681 3788 542942163 542942270 2.360000e-32 150.0
9 TraesCS5D01G370300 chr1A 83.756 671 65 25 1 653 218495627 218494983 2.520000e-166 595.0
10 TraesCS5D01G370300 chr1A 80.074 537 81 17 1 522 73097093 73096568 3.570000e-100 375.0
11 TraesCS5D01G370300 chr3D 84.084 666 51 28 1 631 7095927 7095282 3.260000e-165 592.0
12 TraesCS5D01G370300 chr7D 85.008 607 44 26 1 565 596075679 596075078 1.180000e-159 573.0
13 TraesCS5D01G370300 chr7D 84.628 605 47 23 1 564 572668555 572667956 9.190000e-156 560.0
14 TraesCS5D01G370300 chr7D 80.926 540 77 19 1 522 522506261 522505730 1.640000e-108 403.0
15 TraesCS5D01G370300 chr6D 82.963 675 71 20 1 652 470577531 470576878 1.530000e-158 569.0
16 TraesCS5D01G370300 chr6D 82.938 674 53 28 1 632 6180274 6179621 5.530000e-153 551.0
17 TraesCS5D01G370300 chr6D 88.430 121 11 1 570 687 328743939 328744059 3.940000e-30 143.0
18 TraesCS5D01G370300 chr6D 82.927 123 19 2 557 677 9873916 9873794 4.000000e-20 110.0
19 TraesCS5D01G370300 chr2A 81.447 539 59 21 1 516 35944731 35944211 1.640000e-108 403.0
20 TraesCS5D01G370300 chr1D 77.053 414 54 25 276 683 451395871 451395493 2.310000e-47 200.0
21 TraesCS5D01G370300 chr7A 86.310 168 20 1 528 692 510896228 510896061 3.010000e-41 180.0
22 TraesCS5D01G370300 chr6B 81.928 166 24 5 522 683 163657945 163658108 6.600000e-28 135.0
23 TraesCS5D01G370300 chr6B 87.500 96 9 2 598 690 2635186 2635281 1.440000e-19 108.0
24 TraesCS5D01G370300 chr4B 82.836 134 20 2 553 683 21934147 21934280 2.390000e-22 117.0
25 TraesCS5D01G370300 chr3B 82.090 134 21 2 553 683 825474273 825474140 1.110000e-20 111.0
26 TraesCS5D01G370300 chr3B 79.851 134 24 2 553 683 618007172 618007305 1.120000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G370300 chr5D 445305840 445309627 3787 False 6996.0 6996 100.00000 1 3788 1 chr5D.!!$F1 3787
1 TraesCS5D01G370300 chr5A 562856072 562859338 3266 False 1499.0 3491 93.91800 692 3788 3 chr5A.!!$F1 3096
2 TraesCS5D01G370300 chr5B 542934639 542942270 7631 False 1357.5 3421 91.18525 688 3788 4 chr5B.!!$F1 3100
3 TraesCS5D01G370300 chr1A 218494983 218495627 644 True 595.0 595 83.75600 1 653 1 chr1A.!!$R2 652
4 TraesCS5D01G370300 chr1A 73096568 73097093 525 True 375.0 375 80.07400 1 522 1 chr1A.!!$R1 521
5 TraesCS5D01G370300 chr3D 7095282 7095927 645 True 592.0 592 84.08400 1 631 1 chr3D.!!$R1 630
6 TraesCS5D01G370300 chr7D 596075078 596075679 601 True 573.0 573 85.00800 1 565 1 chr7D.!!$R3 564
7 TraesCS5D01G370300 chr7D 572667956 572668555 599 True 560.0 560 84.62800 1 564 1 chr7D.!!$R2 563
8 TraesCS5D01G370300 chr7D 522505730 522506261 531 True 403.0 403 80.92600 1 522 1 chr7D.!!$R1 521
9 TraesCS5D01G370300 chr6D 470576878 470577531 653 True 569.0 569 82.96300 1 652 1 chr6D.!!$R3 651
10 TraesCS5D01G370300 chr6D 6179621 6180274 653 True 551.0 551 82.93800 1 632 1 chr6D.!!$R1 631
11 TraesCS5D01G370300 chr2A 35944211 35944731 520 True 403.0 403 81.44700 1 516 1 chr2A.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 778 0.452122 GACGTGAAATCGCAAACCCG 60.452 55.000 0.0 0.0 0.00 5.28 F
687 779 0.881159 ACGTGAAATCGCAAACCCGA 60.881 50.000 0.0 0.0 41.98 5.14 F
2538 2644 1.137825 CGAGAAGGACAGGACGAGC 59.862 63.158 0.0 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2220 2326 1.003759 CGCTCGTAGTAGTGCAGGTAG 60.004 57.143 0.0 0.0 0.0 3.18 R
2574 2680 1.218316 CTCCAGGTACTTGTCGGCC 59.782 63.158 4.1 0.0 34.6 6.13 R
3754 8621 0.989890 GTCGTGTGGTAGTTCATCGC 59.010 55.000 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 50 2.411748 TCAGATCACGTCACGAAAATGC 59.588 45.455 2.91 0.00 0.00 3.56
99 104 2.234300 AAGTAGACACCAACACACGG 57.766 50.000 0.00 0.00 0.00 4.94
182 189 5.412594 AGCGAACATATGACAGTGAAAACAT 59.587 36.000 10.38 0.00 0.00 2.71
366 454 4.510167 AGGAGTCAAATGGGAATGTAGG 57.490 45.455 0.00 0.00 0.00 3.18
404 492 2.094957 GGACTGAGTGTAGCACAGACTC 60.095 54.545 8.24 8.24 45.62 3.36
456 545 1.792949 CACACTAGCAACGACCTTCAC 59.207 52.381 0.00 0.00 0.00 3.18
485 574 1.923864 GCTTGTGAAAACCAACAACGG 59.076 47.619 0.00 0.00 0.00 4.44
486 575 2.672760 GCTTGTGAAAACCAACAACGGT 60.673 45.455 0.00 0.00 42.71 4.83
496 585 2.492773 AACAACGGTCCGACCTCGT 61.493 57.895 20.51 6.51 35.66 4.18
509 598 1.736681 GACCTCGTACTAGCAACGACT 59.263 52.381 14.88 5.44 43.90 4.18
551 640 3.469863 GACCCGGACACAGGCACAA 62.470 63.158 0.73 0.00 0.00 3.33
596 685 1.081892 CGCAGCAGCTAGACAATTGT 58.918 50.000 11.78 11.78 39.10 2.71
620 709 6.143118 GTGTTTTGCACGCATATTAAAGACAA 59.857 34.615 8.48 0.00 38.45 3.18
627 716 7.134815 GCACGCATATTAAAGACAAATGATCT 58.865 34.615 0.00 0.00 0.00 2.75
648 740 9.554395 TGATCTAACTCTAGACTTAGATGTGAG 57.446 37.037 26.48 10.32 39.01 3.51
654 746 9.914834 AACTCTAGACTTAGATGTGAGATAGTT 57.085 33.333 0.00 0.00 35.43 2.24
670 762 9.388346 GTGAGATAGTTATTTCACATCTAGACG 57.612 37.037 14.49 0.00 43.42 4.18
671 763 9.121658 TGAGATAGTTATTTCACATCTAGACGT 57.878 33.333 0.00 0.00 0.00 4.34
672 764 9.388346 GAGATAGTTATTTCACATCTAGACGTG 57.612 37.037 12.71 12.71 34.34 4.49
673 765 9.121658 AGATAGTTATTTCACATCTAGACGTGA 57.878 33.333 17.26 17.26 40.30 4.35
679 771 3.435566 TCACATCTAGACGTGAAATCGC 58.564 45.455 18.74 0.00 39.14 4.58
680 772 3.119637 TCACATCTAGACGTGAAATCGCA 60.120 43.478 18.74 0.00 39.14 5.10
681 773 3.612423 CACATCTAGACGTGAAATCGCAA 59.388 43.478 13.63 0.00 35.02 4.85
682 774 4.091365 CACATCTAGACGTGAAATCGCAAA 59.909 41.667 13.63 0.00 35.02 3.68
683 775 4.091509 ACATCTAGACGTGAAATCGCAAAC 59.908 41.667 0.00 0.00 0.00 2.93
684 776 2.991190 TCTAGACGTGAAATCGCAAACC 59.009 45.455 0.00 0.00 0.00 3.27
685 777 0.872388 AGACGTGAAATCGCAAACCC 59.128 50.000 0.00 0.00 0.00 4.11
686 778 0.452122 GACGTGAAATCGCAAACCCG 60.452 55.000 0.00 0.00 0.00 5.28
687 779 0.881159 ACGTGAAATCGCAAACCCGA 60.881 50.000 0.00 0.00 41.98 5.14
689 781 1.661617 CGTGAAATCGCAAACCCGATA 59.338 47.619 0.00 0.00 46.29 2.92
690 782 2.094575 CGTGAAATCGCAAACCCGATAA 59.905 45.455 0.00 0.00 46.29 1.75
694 786 6.259638 GTGAAATCGCAAACCCGATAAATTA 58.740 36.000 0.00 0.00 46.29 1.40
896 995 4.428209 CGCCATACAGCATCTATAAGAGG 58.572 47.826 0.00 0.00 0.00 3.69
964 1063 1.359848 ACGTGTGCAAAGATCGATCC 58.640 50.000 21.66 7.10 0.00 3.36
965 1064 1.337728 ACGTGTGCAAAGATCGATCCA 60.338 47.619 21.66 9.73 0.00 3.41
1596 1702 3.188786 CACTTCTACTGCCGCGGC 61.189 66.667 42.35 42.35 42.35 6.53
1780 1886 1.220477 GTGGAGGAGAGCAAGAGGC 59.780 63.158 0.00 0.00 45.30 4.70
2533 2639 3.760035 GCGCCGAGAAGGACAGGA 61.760 66.667 0.00 0.00 45.00 3.86
2537 2643 1.803943 CCGAGAAGGACAGGACGAG 59.196 63.158 0.00 0.00 45.00 4.18
2538 2644 1.137825 CGAGAAGGACAGGACGAGC 59.862 63.158 0.00 0.00 0.00 5.03
2821 7344 7.039313 TCGTAGATTTATCAGTACATGCAGT 57.961 36.000 0.00 0.00 0.00 4.40
2881 7412 2.106511 GGCTAGGATTATCAAGTGGGCA 59.893 50.000 0.00 0.00 0.00 5.36
2926 7457 5.707298 CCAGATTTACACCTGATCAAACTGT 59.293 40.000 0.00 0.96 32.37 3.55
3041 7649 2.076863 CCCAAAGAGTAAGCGTGGAAG 58.923 52.381 0.00 0.00 0.00 3.46
3142 7821 7.322664 AGTTTTGTCTCAAACACACATCATTT 58.677 30.769 0.00 0.00 37.70 2.32
3174 7853 5.381174 TGAAATTCAGCTTGAGACCATTG 57.619 39.130 0.00 0.00 0.00 2.82
3184 7863 4.276926 GCTTGAGACCATTGACTTCAAAGT 59.723 41.667 0.00 0.00 43.16 2.66
3188 7867 5.528690 TGAGACCATTGACTTCAAAGTTCAG 59.471 40.000 0.00 0.00 39.88 3.02
3189 7868 4.276926 AGACCATTGACTTCAAAGTTCAGC 59.723 41.667 0.00 0.00 39.88 4.26
3197 7876 0.874390 TCAAAGTTCAGCGGATGTGC 59.126 50.000 0.00 0.00 0.00 4.57
3203 7882 1.537202 GTTCAGCGGATGTGCTTTCTT 59.463 47.619 0.00 0.00 44.46 2.52
3213 7892 5.363939 GGATGTGCTTTCTTGATAGCTAGT 58.636 41.667 12.70 0.00 38.22 2.57
3214 7893 6.516718 GGATGTGCTTTCTTGATAGCTAGTA 58.483 40.000 12.70 0.00 38.22 1.82
3215 7894 7.158021 GGATGTGCTTTCTTGATAGCTAGTAT 58.842 38.462 12.70 4.21 38.22 2.12
3240 7919 9.798994 ATCAAATAAGATCTTTGCAAAGACATC 57.201 29.630 37.28 30.76 46.80 3.06
3246 7925 3.067106 TCTTTGCAAAGACATCGAGGTC 58.933 45.455 32.86 21.99 39.95 3.85
3258 7937 3.006859 ACATCGAGGTCATTTGTGAGACA 59.993 43.478 0.00 0.00 36.50 3.41
3260 7939 2.628178 TCGAGGTCATTTGTGAGACACT 59.372 45.455 0.00 0.00 36.50 3.55
3262 7941 3.070018 GAGGTCATTTGTGAGACACTGG 58.930 50.000 0.00 0.00 36.50 4.00
3287 7985 5.796424 AACCAATAGATCATTTGATGCCC 57.204 39.130 8.71 0.00 34.37 5.36
3290 7988 4.775780 CCAATAGATCATTTGATGCCCCAT 59.224 41.667 8.71 0.00 34.37 4.00
3291 7989 5.953548 CCAATAGATCATTTGATGCCCCATA 59.046 40.000 8.71 0.00 34.37 2.74
3298 7996 6.556974 TCATTTGATGCCCCATATTCAAAA 57.443 33.333 2.93 0.00 40.36 2.44
3302 8000 9.339850 CATTTGATGCCCCATATTCAAAAATTA 57.660 29.630 2.93 0.00 40.36 1.40
3304 8002 9.917887 TTTGATGCCCCATATTCAAAAATTATT 57.082 25.926 0.00 0.00 35.71 1.40
3309 8007 9.282569 TGCCCCATATTCAAAAATTATTATTGC 57.717 29.630 0.00 0.00 0.00 3.56
3310 8008 9.282569 GCCCCATATTCAAAAATTATTATTGCA 57.717 29.630 0.00 0.00 0.00 4.08
3393 8221 2.298300 CAAGTCGATGTTTCAACGCAC 58.702 47.619 0.00 0.00 30.00 5.34
3548 8378 6.586344 GTGATCTCTACAATTCCAATCCAGA 58.414 40.000 0.00 0.00 0.00 3.86
3567 8397 4.439968 CAGACAGCAATAGAATCAGCTCA 58.560 43.478 0.00 0.00 34.61 4.26
3653 8483 1.065273 GCTGCATCCCATTTCTGCG 59.935 57.895 0.00 0.00 38.75 5.18
3740 8607 5.832539 ACCCTACATAAGCTTATCATGCT 57.167 39.130 16.21 2.78 43.32 3.79
3754 8621 4.808077 ATCATGCTCGACTTGCTTATTG 57.192 40.909 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 50 1.602668 CGCATGTGTCTTTTGTTGGGG 60.603 52.381 0.00 0.00 0.00 4.96
337 425 8.116026 ACATTCCCATTTGACTCCTAGTATTTT 58.884 33.333 0.00 0.00 0.00 1.82
360 448 6.903534 TCCTAGTTCCTCTCATTTTCCTACAT 59.096 38.462 0.00 0.00 0.00 2.29
366 454 6.071051 ACTCAGTCCTAGTTCCTCTCATTTTC 60.071 42.308 0.00 0.00 0.00 2.29
486 575 1.089920 GTTGCTAGTACGAGGTCGGA 58.910 55.000 5.08 0.00 44.95 4.55
496 585 1.466167 GTGTCCGAGTCGTTGCTAGTA 59.534 52.381 12.31 0.00 0.00 1.82
509 598 0.038251 CTAGCTGTGCTTGTGTCCGA 60.038 55.000 0.00 0.00 40.44 4.55
596 685 5.763088 TGTCTTTAATATGCGTGCAAAACA 58.237 33.333 0.00 0.00 0.00 2.83
659 751 3.179048 TGCGATTTCACGTCTAGATGTG 58.821 45.455 31.17 31.17 46.78 3.21
660 752 3.503827 TGCGATTTCACGTCTAGATGT 57.496 42.857 11.99 11.99 35.59 3.06
661 753 4.492570 GGTTTGCGATTTCACGTCTAGATG 60.493 45.833 10.54 10.54 35.59 2.90
662 754 3.617263 GGTTTGCGATTTCACGTCTAGAT 59.383 43.478 0.00 0.00 35.59 1.98
663 755 2.991190 GGTTTGCGATTTCACGTCTAGA 59.009 45.455 0.00 0.00 35.59 2.43
664 756 2.093783 GGGTTTGCGATTTCACGTCTAG 59.906 50.000 0.00 0.00 35.59 2.43
665 757 2.070783 GGGTTTGCGATTTCACGTCTA 58.929 47.619 0.00 0.00 35.59 2.59
666 758 0.872388 GGGTTTGCGATTTCACGTCT 59.128 50.000 0.00 0.00 35.59 4.18
667 759 0.452122 CGGGTTTGCGATTTCACGTC 60.452 55.000 0.00 0.00 35.59 4.34
668 760 0.881159 TCGGGTTTGCGATTTCACGT 60.881 50.000 0.00 0.00 35.59 4.49
669 761 0.446222 ATCGGGTTTGCGATTTCACG 59.554 50.000 0.00 0.00 0.00 4.35
670 762 3.750639 TTATCGGGTTTGCGATTTCAC 57.249 42.857 0.00 0.00 0.00 3.18
671 763 4.974368 ATTTATCGGGTTTGCGATTTCA 57.026 36.364 0.00 0.00 0.00 2.69
672 764 7.924103 ATTAATTTATCGGGTTTGCGATTTC 57.076 32.000 0.00 0.00 0.00 2.17
673 765 9.804758 TTAATTAATTTATCGGGTTTGCGATTT 57.195 25.926 5.91 0.00 0.00 2.17
674 766 9.804758 TTTAATTAATTTATCGGGTTTGCGATT 57.195 25.926 5.91 0.00 0.00 3.34
675 767 9.240159 GTTTAATTAATTTATCGGGTTTGCGAT 57.760 29.630 5.91 0.00 0.00 4.58
676 768 8.242053 TGTTTAATTAATTTATCGGGTTTGCGA 58.758 29.630 5.91 0.00 0.00 5.10
677 769 8.395940 TGTTTAATTAATTTATCGGGTTTGCG 57.604 30.769 5.91 0.00 0.00 4.85
680 772 9.373603 GGCTTGTTTAATTAATTTATCGGGTTT 57.626 29.630 5.91 0.00 0.00 3.27
681 773 8.532819 TGGCTTGTTTAATTAATTTATCGGGTT 58.467 29.630 5.91 0.00 0.00 4.11
682 774 8.068892 TGGCTTGTTTAATTAATTTATCGGGT 57.931 30.769 5.91 0.00 0.00 5.28
683 775 8.934507 TTGGCTTGTTTAATTAATTTATCGGG 57.065 30.769 5.91 0.00 0.00 5.14
782 877 2.158652 TCGGATACTGGCAGCTAGTAGT 60.159 50.000 21.77 11.42 34.42 2.73
783 878 2.226912 GTCGGATACTGGCAGCTAGTAG 59.773 54.545 21.77 10.31 34.42 2.57
784 879 2.158652 AGTCGGATACTGGCAGCTAGTA 60.159 50.000 19.93 19.93 36.93 1.82
865 964 3.415983 TGTATGGCGGCCATGGGT 61.416 61.111 38.03 20.10 44.84 4.51
964 1063 0.032678 AGCTAACCTGGCGATCGATG 59.967 55.000 21.57 7.37 34.52 3.84
965 1064 1.542030 CTAGCTAACCTGGCGATCGAT 59.458 52.381 21.57 0.00 34.52 3.59
1143 1246 2.613595 GTCGCCATACAAGCAATCATCA 59.386 45.455 0.00 0.00 0.00 3.07
1176 1282 2.279186 TACATGCCATCGTCGCCG 60.279 61.111 0.00 0.00 0.00 6.46
1177 1283 2.585869 CGTACATGCCATCGTCGCC 61.586 63.158 0.00 0.00 0.00 5.54
1178 1284 0.939577 ATCGTACATGCCATCGTCGC 60.940 55.000 0.00 0.00 0.00 5.19
1596 1702 4.135153 ACGTAGCCGCTCCAGCAG 62.135 66.667 0.00 0.00 42.21 4.24
1937 2043 1.966451 CGGTTCTTGTCCAGCCACC 60.966 63.158 0.00 0.00 0.00 4.61
1947 2053 1.801913 CGAGTCGGAGCGGTTCTTG 60.802 63.158 4.10 0.00 0.00 3.02
1989 2095 1.666553 CGGGCAGTGCTTCGTGTTA 60.667 57.895 16.11 0.00 0.00 2.41
2220 2326 1.003759 CGCTCGTAGTAGTGCAGGTAG 60.004 57.143 0.00 0.00 0.00 3.18
2574 2680 1.218316 CTCCAGGTACTTGTCGGCC 59.782 63.158 4.10 0.00 34.60 6.13
2821 7344 5.185635 AGCCAATTACTACGTTGTACAGGTA 59.814 40.000 9.41 2.33 0.00 3.08
2881 7412 3.119495 GGTTTCACTGTTTGCAGAGTTGT 60.119 43.478 1.30 0.00 45.28 3.32
2952 7543 5.409643 AAAGCACACGCACATCTATTATC 57.590 39.130 0.00 0.00 42.27 1.75
3041 7649 7.044798 AGTGTTGAAGATGCTCTAAGGTAATC 58.955 38.462 0.00 0.00 0.00 1.75
3142 7821 9.181061 TCTCAAGCTGAATTTCATAAATGATGA 57.819 29.630 0.00 0.00 43.11 2.92
3174 7853 2.808543 ACATCCGCTGAACTTTGAAGTC 59.191 45.455 0.00 0.00 38.57 3.01
3184 7863 1.536766 CAAGAAAGCACATCCGCTGAA 59.463 47.619 0.00 0.00 42.89 3.02
3188 7867 2.286654 GCTATCAAGAAAGCACATCCGC 60.287 50.000 0.00 0.00 38.63 5.54
3189 7868 3.201290 AGCTATCAAGAAAGCACATCCG 58.799 45.455 0.00 0.00 41.32 4.18
3214 7893 9.798994 GATGTCTTTGCAAAGATCTTATTTGAT 57.201 29.630 37.03 19.99 45.83 2.57
3215 7894 7.964559 CGATGTCTTTGCAAAGATCTTATTTGA 59.035 33.333 37.03 14.44 45.83 2.69
3222 7901 3.937706 CCTCGATGTCTTTGCAAAGATCT 59.062 43.478 37.03 28.09 45.83 2.75
3223 7902 3.686726 ACCTCGATGTCTTTGCAAAGATC 59.313 43.478 37.03 29.90 45.83 2.75
3224 7903 3.679389 ACCTCGATGTCTTTGCAAAGAT 58.321 40.909 37.03 25.88 45.83 2.40
3240 7919 2.733552 CAGTGTCTCACAAATGACCTCG 59.266 50.000 2.80 0.00 36.74 4.63
3246 7925 3.374745 GTTTGCCAGTGTCTCACAAATG 58.625 45.455 2.80 0.00 36.74 2.32
3258 7937 5.716228 TCAAATGATCTATTGGTTTGCCAGT 59.284 36.000 10.01 0.00 46.91 4.00
3260 7939 6.575267 CATCAAATGATCTATTGGTTTGCCA 58.425 36.000 10.01 0.00 36.32 4.92
3262 7941 5.464389 GGCATCAAATGATCTATTGGTTTGC 59.536 40.000 16.41 16.41 33.24 3.68
3273 7971 5.988310 TGAATATGGGGCATCAAATGATC 57.012 39.130 0.00 0.00 31.21 2.92
3309 8007 6.827641 CAATTCAAAGGACATTGCAAAGATG 58.172 36.000 8.96 2.57 0.00 2.90
3317 8015 3.681593 TGGGCAATTCAAAGGACATTG 57.318 42.857 0.00 0.00 0.00 2.82
3318 8016 3.620472 GCATGGGCAATTCAAAGGACATT 60.620 43.478 0.00 0.00 40.72 2.71
3319 8017 2.093341 GCATGGGCAATTCAAAGGACAT 60.093 45.455 0.00 0.00 40.72 3.06
3320 8018 1.275856 GCATGGGCAATTCAAAGGACA 59.724 47.619 0.00 0.00 40.72 4.02
3323 8021 0.614294 TGGCATGGGCAATTCAAAGG 59.386 50.000 0.00 0.00 43.71 3.11
3324 8022 2.285083 CATGGCATGGGCAATTCAAAG 58.715 47.619 19.80 0.00 42.43 2.77
3327 8025 0.978667 AGCATGGCATGGGCAATTCA 60.979 50.000 27.48 0.00 42.43 2.57
3393 8221 1.135024 CATCAAATGGCTTTCCCGGTG 60.135 52.381 0.00 0.00 35.87 4.94
3548 8378 4.582869 TGTTGAGCTGATTCTATTGCTGT 58.417 39.130 0.00 0.00 35.76 4.40
3740 8607 2.887337 TCATCGCAATAAGCAAGTCGA 58.113 42.857 0.00 0.00 46.13 4.20
3754 8621 0.989890 GTCGTGTGGTAGTTCATCGC 59.010 55.000 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.