Multiple sequence alignment - TraesCS5D01G369700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G369700 chr5D 100.000 3368 0 0 1 3368 444899114 444902481 0.000000e+00 6220
1 TraesCS5D01G369700 chr5D 98.966 290 2 1 3080 3368 73494244 73494533 4.980000e-143 518
2 TraesCS5D01G369700 chr5A 93.328 2683 94 37 1 2623 561972299 561974956 0.000000e+00 3884
3 TraesCS5D01G369700 chr5A 96.532 173 6 0 1007 1179 83626982 83626810 1.530000e-73 287
4 TraesCS5D01G369700 chr5A 97.590 166 4 0 1014 1179 280761059 280761224 5.500000e-73 285
5 TraesCS5D01G369700 chr5A 88.000 175 16 4 2913 3086 561975510 561975680 5.700000e-48 202
6 TraesCS5D01G369700 chr5B 94.305 1949 56 17 814 2720 541947210 541949145 0.000000e+00 2933
7 TraesCS5D01G369700 chr5B 95.586 725 18 6 1 712 541946149 541946872 0.000000e+00 1149
8 TraesCS5D01G369700 chr5B 83.276 293 45 4 3078 3368 483215971 483215681 1.990000e-67 267
9 TraesCS5D01G369700 chr5B 97.561 123 3 0 2956 3078 541950851 541950973 9.470000e-51 211
10 TraesCS5D01G369700 chr5B 92.593 81 6 0 2985 3065 211739452 211739532 2.120000e-22 117
11 TraesCS5D01G369700 chr4B 93.421 304 11 6 1249 1544 5074576 5074274 3.080000e-120 442
12 TraesCS5D01G369700 chr4B 95.349 215 5 3 972 1186 5074778 5074569 1.500000e-88 337
13 TraesCS5D01G369700 chrUn 94.928 276 14 0 1249 1524 2319688 2319413 1.860000e-117 433
14 TraesCS5D01G369700 chrUn 86.424 302 29 8 3070 3368 463599801 463599509 1.510000e-83 320
15 TraesCS5D01G369700 chrUn 93.488 215 9 3 972 1186 2319890 2319681 7.010000e-82 315
16 TraesCS5D01G369700 chrUn 86.093 302 30 9 3070 3368 74633103 74633395 7.010000e-82 315
17 TraesCS5D01G369700 chr3A 92.027 301 14 2 1259 1550 22815576 22815277 6.720000e-112 414
18 TraesCS5D01G369700 chr3A 88.966 290 21 8 3081 3368 724295220 724295500 6.920000e-92 348
19 TraesCS5D01G369700 chr3A 95.192 208 7 1 972 1179 22815788 22815584 3.240000e-85 326
20 TraesCS5D01G369700 chr3A 97.590 166 4 0 1014 1179 634124418 634124583 5.500000e-73 285
21 TraesCS5D01G369700 chr3A 83.849 291 43 4 3080 3368 422335773 422335485 1.190000e-69 274
22 TraesCS5D01G369700 chr3A 100.000 74 0 0 2991 3064 659020191 659020118 1.630000e-28 137
23 TraesCS5D01G369700 chr3A 94.382 89 4 1 2992 3079 726123517 726123429 5.860000e-28 135
24 TraesCS5D01G369700 chr4A 96.585 205 6 1 1320 1524 716938879 716939082 4.160000e-89 339
25 TraesCS5D01G369700 chr6A 87.043 301 28 8 3070 3368 578204648 578204939 2.510000e-86 329
26 TraesCS5D01G369700 chr6A 86.598 291 27 8 3080 3368 162890201 162889921 9.070000e-81 311
27 TraesCS5D01G369700 chr2A 86.301 292 28 9 3080 3368 382332163 382332445 1.170000e-79 307
28 TraesCS5D01G369700 chr2A 97.590 166 4 0 1014 1179 729397990 729398155 5.500000e-73 285
29 TraesCS5D01G369700 chr7A 80.240 334 58 7 3 332 106241854 106242183 9.330000e-61 244
30 TraesCS5D01G369700 chr7B 77.473 364 76 6 3 363 59635407 59635767 2.630000e-51 213
31 TraesCS5D01G369700 chr7B 100.000 73 0 0 2992 3064 372325570 372325642 5.860000e-28 135
32 TraesCS5D01G369700 chr3B 91.667 108 6 2 2973 3078 798525937 798525831 2.710000e-31 147
33 TraesCS5D01G369700 chr3D 100.000 73 0 0 2992 3064 524718120 524718048 5.860000e-28 135
34 TraesCS5D01G369700 chr3D 92.708 96 4 2 2973 3066 595076964 595076870 5.860000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G369700 chr5D 444899114 444902481 3367 False 6220.0 6220 100.000000 1 3368 1 chr5D.!!$F2 3367
1 TraesCS5D01G369700 chr5A 561972299 561975680 3381 False 2043.0 3884 90.664000 1 3086 2 chr5A.!!$F2 3085
2 TraesCS5D01G369700 chr5B 541946149 541950973 4824 False 1431.0 2933 95.817333 1 3078 3 chr5B.!!$F2 3077
3 TraesCS5D01G369700 chr4B 5074274 5074778 504 True 389.5 442 94.385000 972 1544 2 chr4B.!!$R1 572
4 TraesCS5D01G369700 chr3A 22815277 22815788 511 True 370.0 414 93.609500 972 1550 2 chr3A.!!$R4 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 595 0.318529 CCATCATCTCGCTCTCCACG 60.319 60.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2386 2682 0.103026 TCGACAGCAATGGATCTCGG 59.897 55.0 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 283 0.880278 GAAGCTCCAGCACACGTTCA 60.880 55.000 0.48 0.00 45.16 3.18
592 593 0.758310 AGCCATCATCTCGCTCTCCA 60.758 55.000 0.00 0.00 0.00 3.86
593 594 0.599728 GCCATCATCTCGCTCTCCAC 60.600 60.000 0.00 0.00 0.00 4.02
594 595 0.318529 CCATCATCTCGCTCTCCACG 60.319 60.000 0.00 0.00 0.00 4.94
595 596 0.665298 CATCATCTCGCTCTCCACGA 59.335 55.000 0.00 0.00 38.02 4.35
610 621 1.600013 CCACGACACATTGTTCCGAAA 59.400 47.619 12.70 0.00 0.00 3.46
663 674 9.003658 AGTACATAAGAAGAAATGTTGGAGTTG 57.996 33.333 0.00 0.00 37.50 3.16
675 686 3.244875 TGTTGGAGTTGTCAGTGCCATAT 60.245 43.478 0.00 0.00 0.00 1.78
677 688 4.406648 TGGAGTTGTCAGTGCCATATAG 57.593 45.455 0.00 0.00 0.00 1.31
678 689 4.030216 TGGAGTTGTCAGTGCCATATAGA 58.970 43.478 0.00 0.00 0.00 1.98
685 696 4.594491 TGTCAGTGCCATATAGACATCCAT 59.406 41.667 0.00 0.00 34.59 3.41
747 767 9.973246 GTATGTCACTGTAACAATATGAACTTG 57.027 33.333 0.00 0.00 0.00 3.16
772 792 5.415077 AGTTCTGAATGAATCTGAAGCTTGG 59.585 40.000 2.10 0.00 43.87 3.61
789 810 1.796017 TGGTTTTTCCCCCTGTTTCC 58.204 50.000 0.00 0.00 34.77 3.13
812 833 1.068541 GGGGATTCGACAGTTTTGTGC 60.069 52.381 0.00 0.00 37.76 4.57
828 1077 7.788846 CAGTTTTGTGCGAAATTCATGTAAAAG 59.211 33.333 0.00 0.00 0.00 2.27
847 1096 6.428385 AAAAGTAGCACTGAATCATACAGC 57.572 37.500 0.00 0.00 38.74 4.40
876 1125 7.254455 CCAGCAGCTACAAATTACAGTATACAC 60.254 40.741 5.50 0.00 0.00 2.90
877 1126 7.492669 CAGCAGCTACAAATTACAGTATACACT 59.507 37.037 5.50 0.00 34.42 3.55
893 1144 9.509855 CAGTATACACTAGTTGACTTCTGATTC 57.490 37.037 5.50 0.00 32.21 2.52
969 1230 1.203137 TCTGTGGCCACTAGTACCAGT 60.203 52.381 34.75 0.00 33.12 4.00
970 1231 1.204941 CTGTGGCCACTAGTACCAGTC 59.795 57.143 34.75 6.01 33.12 3.51
974 1236 0.739561 GCCACTAGTACCAGTCTCCG 59.260 60.000 0.00 0.00 0.00 4.63
1644 1922 1.971357 GTCAAGTCTCAGGTGAAGGGA 59.029 52.381 0.00 0.00 0.00 4.20
1941 2222 2.213499 GTGGAGATATCCGCAAAGGTG 58.787 52.381 15.04 0.00 41.99 4.00
2046 2327 1.021390 CAACGAGGCATCTGGTGGAC 61.021 60.000 0.00 0.00 32.22 4.02
2058 2339 3.112709 GTGGACGAAGCTGACCGC 61.113 66.667 0.00 0.00 39.57 5.68
2355 2651 0.040067 CTTTCCTGAACAGCGCCAAC 60.040 55.000 2.29 0.00 0.00 3.77
2356 2652 1.452145 TTTCCTGAACAGCGCCAACC 61.452 55.000 2.29 0.00 0.00 3.77
2456 2756 2.404995 GCATGGTCTGGTCTGCAGC 61.405 63.158 9.47 4.04 34.77 5.25
2484 2784 2.521105 TCTGATCATCATGGACAGCG 57.479 50.000 0.00 0.00 0.00 5.18
2567 2869 6.852664 TGCTATATGGTCACATACATACTCG 58.147 40.000 0.00 0.00 42.05 4.18
2573 2875 3.059597 GGTCACATACATACTCGCATTGC 60.060 47.826 0.00 0.00 0.00 3.56
2575 2877 2.096762 CACATACATACTCGCATTGCCG 60.097 50.000 2.41 0.00 0.00 5.69
2576 2878 1.460743 CATACATACTCGCATTGCCGG 59.539 52.381 0.00 0.00 0.00 6.13
2583 2885 2.508439 CGCATTGCCGGTCGTAGT 60.508 61.111 1.90 0.00 0.00 2.73
2584 2886 2.798501 CGCATTGCCGGTCGTAGTG 61.799 63.158 1.90 0.00 0.00 2.74
2585 2887 1.447140 GCATTGCCGGTCGTAGTGA 60.447 57.895 1.90 0.00 0.00 3.41
2589 2898 2.585247 GCCGGTCGTAGTGATGGC 60.585 66.667 1.90 0.00 41.75 4.40
2626 2935 5.734720 TCTCCTTATGAACTTGCAGTAAGG 58.265 41.667 3.05 0.00 41.64 2.69
2638 2997 2.277084 GCAGTAAGGTCCATGTAACCG 58.723 52.381 8.44 0.00 41.89 4.44
2665 3024 1.666209 GGCATGTGGAATTGGGGACG 61.666 60.000 0.00 0.00 0.00 4.79
2675 3036 0.548031 ATTGGGGACGCTCATGTGAT 59.452 50.000 0.00 0.00 0.00 3.06
2676 3037 0.392863 TTGGGGACGCTCATGTGATG 60.393 55.000 0.00 0.00 0.00 3.07
2690 3051 5.261216 TCATGTGATGGTCTGTACTCTGTA 58.739 41.667 0.00 0.00 0.00 2.74
2692 3053 3.444034 TGTGATGGTCTGTACTCTGTAGC 59.556 47.826 0.00 0.00 0.00 3.58
2726 3145 6.468333 TTGATGATATTTGGTTGGTCATGG 57.532 37.500 0.00 0.00 30.24 3.66
2745 3164 2.169789 CACGAAGATGGAGCTGGCG 61.170 63.158 0.00 0.00 0.00 5.69
2765 3189 3.967715 GGAGCCACCGAAGAACAC 58.032 61.111 0.00 0.00 0.00 3.32
2773 3197 1.281656 CCGAAGAACACCGGCAAAC 59.718 57.895 0.00 0.00 39.22 2.93
2778 3202 0.395173 AGAACACCGGCAAACACCTT 60.395 50.000 0.00 0.00 0.00 3.50
2784 3208 0.879090 CCGGCAAACACCTTACCTTC 59.121 55.000 0.00 0.00 0.00 3.46
2796 3220 5.105635 ACACCTTACCTTCGATCGATGTTTA 60.106 40.000 20.18 11.31 0.00 2.01
2804 3230 5.006358 CCTTCGATCGATGTTTACCGATTTT 59.994 40.000 20.18 0.00 44.40 1.82
2805 3231 6.411630 TTCGATCGATGTTTACCGATTTTT 57.588 33.333 20.18 0.00 44.40 1.94
2807 3233 4.890654 CGATCGATGTTTACCGATTTTTCG 59.109 41.667 10.26 0.00 44.40 3.46
2808 3234 3.993547 TCGATGTTTACCGATTTTTCGC 58.006 40.909 0.00 0.00 0.00 4.70
2809 3235 2.768738 CGATGTTTACCGATTTTTCGCG 59.231 45.455 0.00 0.00 0.00 5.87
2810 3236 3.722665 CGATGTTTACCGATTTTTCGCGT 60.723 43.478 5.77 0.00 0.00 6.01
2812 3238 3.543670 TGTTTACCGATTTTTCGCGTTC 58.456 40.909 5.77 0.00 0.00 3.95
2813 3239 2.878906 TTACCGATTTTTCGCGTTCC 57.121 45.000 5.77 0.00 0.00 3.62
2814 3240 1.793258 TACCGATTTTTCGCGTTCCA 58.207 45.000 5.77 0.00 0.00 3.53
2815 3241 1.161843 ACCGATTTTTCGCGTTCCAT 58.838 45.000 5.77 0.00 0.00 3.41
2816 3242 1.129811 ACCGATTTTTCGCGTTCCATC 59.870 47.619 5.77 3.58 0.00 3.51
2818 3244 2.159572 CCGATTTTTCGCGTTCCATCTT 60.160 45.455 5.77 0.00 0.00 2.40
2820 3246 3.666902 CGATTTTTCGCGTTCCATCTTGT 60.667 43.478 5.77 0.00 0.00 3.16
2821 3247 2.679355 TTTTCGCGTTCCATCTTGTG 57.321 45.000 5.77 0.00 0.00 3.33
2822 3248 1.872388 TTTCGCGTTCCATCTTGTGA 58.128 45.000 5.77 0.00 0.00 3.58
2823 3249 1.872388 TTCGCGTTCCATCTTGTGAA 58.128 45.000 5.77 0.00 0.00 3.18
2825 3251 0.165944 CGCGTTCCATCTTGTGAACC 59.834 55.000 0.00 0.00 0.00 3.62
2826 3252 1.523758 GCGTTCCATCTTGTGAACCT 58.476 50.000 0.00 0.00 0.00 3.50
2828 3254 2.095718 GCGTTCCATCTTGTGAACCTTC 60.096 50.000 0.00 0.00 0.00 3.46
2829 3255 2.484264 CGTTCCATCTTGTGAACCTTCC 59.516 50.000 0.00 0.00 0.00 3.46
2843 3354 2.391678 ACCTTCCATTCCATTCCATGC 58.608 47.619 0.00 0.00 0.00 4.06
2855 3366 3.571571 CATTCCATGCTGTGAACTTGTG 58.428 45.455 0.00 0.00 0.00 3.33
2858 3369 0.038892 CATGCTGTGAACTTGTGGGC 60.039 55.000 0.00 0.00 0.00 5.36
2900 3431 6.374417 AAAGGAAATAGCTCAAGGTGTAGA 57.626 37.500 0.00 0.00 0.00 2.59
2906 3437 7.121315 GGAAATAGCTCAAGGTGTAGATGTTTT 59.879 37.037 0.00 0.00 0.00 2.43
2908 3439 5.234466 AGCTCAAGGTGTAGATGTTTTCT 57.766 39.130 0.00 0.00 38.57 2.52
2909 3440 5.625150 AGCTCAAGGTGTAGATGTTTTCTT 58.375 37.500 0.00 0.00 35.79 2.52
2910 3441 5.471456 AGCTCAAGGTGTAGATGTTTTCTTG 59.529 40.000 0.00 0.00 35.79 3.02
2911 3442 5.470098 GCTCAAGGTGTAGATGTTTTCTTGA 59.530 40.000 0.00 0.00 37.41 3.02
2923 4793 2.791383 TTTCTTGACCGGCAATTGTG 57.209 45.000 0.00 0.00 35.59 3.33
2924 4794 1.974265 TTCTTGACCGGCAATTGTGA 58.026 45.000 0.00 0.00 35.59 3.58
2931 4801 0.673437 CCGGCAATTGTGAACCTGTT 59.327 50.000 7.40 0.00 0.00 3.16
2932 4802 1.602668 CCGGCAATTGTGAACCTGTTG 60.603 52.381 7.40 0.00 0.00 3.33
2946 4816 1.419374 CTGTTGTACTGGTCGCTGTC 58.581 55.000 0.00 0.00 0.00 3.51
2947 4817 0.032952 TGTTGTACTGGTCGCTGTCC 59.967 55.000 0.00 0.00 0.00 4.02
2948 4818 0.032952 GTTGTACTGGTCGCTGTCCA 59.967 55.000 0.00 0.00 0.00 4.02
2949 4819 0.753867 TTGTACTGGTCGCTGTCCAA 59.246 50.000 0.00 0.00 34.35 3.53
2950 4820 0.032952 TGTACTGGTCGCTGTCCAAC 59.967 55.000 0.00 0.00 34.35 3.77
2951 4821 0.317479 GTACTGGTCGCTGTCCAACT 59.683 55.000 0.00 0.00 34.35 3.16
2952 4822 0.317160 TACTGGTCGCTGTCCAACTG 59.683 55.000 0.00 0.00 34.35 3.16
2963 4852 4.213270 CGCTGTCCAACTGTCTGATTTTAA 59.787 41.667 0.00 0.00 0.00 1.52
3099 4989 7.441890 TTTTCGGATTTGCTATTAACAGTCA 57.558 32.000 0.00 0.00 0.00 3.41
3100 4990 7.441890 TTTCGGATTTGCTATTAACAGTCAA 57.558 32.000 0.00 0.00 0.00 3.18
3101 4991 6.662414 TCGGATTTGCTATTAACAGTCAAG 57.338 37.500 0.00 0.00 0.00 3.02
3102 4992 6.170506 TCGGATTTGCTATTAACAGTCAAGT 58.829 36.000 0.00 0.00 0.00 3.16
3103 4993 6.092122 TCGGATTTGCTATTAACAGTCAAGTG 59.908 38.462 0.00 0.00 0.00 3.16
3104 4994 6.128282 CGGATTTGCTATTAACAGTCAAGTGT 60.128 38.462 0.00 0.00 0.00 3.55
3105 4995 7.573096 CGGATTTGCTATTAACAGTCAAGTGTT 60.573 37.037 8.21 8.21 43.22 3.32
3106 4996 8.082242 GGATTTGCTATTAACAGTCAAGTGTTT 58.918 33.333 8.41 0.00 41.06 2.83
3107 4997 9.463443 GATTTGCTATTAACAGTCAAGTGTTTT 57.537 29.630 8.41 1.06 41.06 2.43
3108 4998 9.816354 ATTTGCTATTAACAGTCAAGTGTTTTT 57.184 25.926 8.41 0.75 41.06 1.94
3109 4999 8.850454 TTGCTATTAACAGTCAAGTGTTTTTC 57.150 30.769 8.41 0.00 41.06 2.29
3110 5000 7.990917 TGCTATTAACAGTCAAGTGTTTTTCA 58.009 30.769 8.41 0.00 41.06 2.69
3111 5001 8.462811 TGCTATTAACAGTCAAGTGTTTTTCAA 58.537 29.630 8.41 0.00 41.06 2.69
3112 5002 9.463443 GCTATTAACAGTCAAGTGTTTTTCAAT 57.537 29.630 8.41 5.43 41.06 2.57
3115 5005 6.869421 AACAGTCAAGTGTTTTTCAATTCG 57.131 33.333 0.00 0.00 37.36 3.34
3116 5006 5.949735 ACAGTCAAGTGTTTTTCAATTCGT 58.050 33.333 0.00 0.00 31.76 3.85
3117 5007 6.027749 ACAGTCAAGTGTTTTTCAATTCGTC 58.972 36.000 0.00 0.00 31.76 4.20
3118 5008 6.027131 CAGTCAAGTGTTTTTCAATTCGTCA 58.973 36.000 0.00 0.00 31.76 4.35
3119 5009 6.692681 CAGTCAAGTGTTTTTCAATTCGTCAT 59.307 34.615 0.00 0.00 31.76 3.06
3120 5010 6.912591 AGTCAAGTGTTTTTCAATTCGTCATC 59.087 34.615 0.00 0.00 31.76 2.92
3121 5011 6.690957 GTCAAGTGTTTTTCAATTCGTCATCA 59.309 34.615 0.00 0.00 31.76 3.07
3122 5012 7.379529 GTCAAGTGTTTTTCAATTCGTCATCAT 59.620 33.333 0.00 0.00 31.76 2.45
3123 5013 7.920151 TCAAGTGTTTTTCAATTCGTCATCATT 59.080 29.630 0.00 0.00 31.76 2.57
3124 5014 7.858052 AGTGTTTTTCAATTCGTCATCATTC 57.142 32.000 0.00 0.00 0.00 2.67
3125 5015 7.424803 AGTGTTTTTCAATTCGTCATCATTCA 58.575 30.769 0.00 0.00 0.00 2.57
3126 5016 7.920151 AGTGTTTTTCAATTCGTCATCATTCAA 59.080 29.630 0.00 0.00 0.00 2.69
3127 5017 8.538856 GTGTTTTTCAATTCGTCATCATTCAAA 58.461 29.630 0.00 0.00 0.00 2.69
3128 5018 9.258826 TGTTTTTCAATTCGTCATCATTCAAAT 57.741 25.926 0.00 0.00 0.00 2.32
3132 5022 7.280730 TCAATTCGTCATCATTCAAATTTGC 57.719 32.000 13.54 0.00 0.00 3.68
3133 5023 6.867293 TCAATTCGTCATCATTCAAATTTGCA 59.133 30.769 13.54 2.71 0.00 4.08
3134 5024 7.546316 TCAATTCGTCATCATTCAAATTTGCAT 59.454 29.630 13.54 5.33 0.00 3.96
3135 5025 6.874297 TTCGTCATCATTCAAATTTGCATC 57.126 33.333 13.54 0.00 0.00 3.91
3136 5026 5.342433 TCGTCATCATTCAAATTTGCATCC 58.658 37.500 13.54 0.00 0.00 3.51
3137 5027 5.103687 CGTCATCATTCAAATTTGCATCCA 58.896 37.500 13.54 0.00 0.00 3.41
3138 5028 5.751509 CGTCATCATTCAAATTTGCATCCAT 59.248 36.000 13.54 0.25 0.00 3.41
3139 5029 6.074516 CGTCATCATTCAAATTTGCATCCATC 60.075 38.462 13.54 0.55 0.00 3.51
3140 5030 6.202188 GTCATCATTCAAATTTGCATCCATCC 59.798 38.462 13.54 0.00 0.00 3.51
3141 5031 4.684877 TCATTCAAATTTGCATCCATCCG 58.315 39.130 13.54 0.00 0.00 4.18
3142 5032 4.160065 TCATTCAAATTTGCATCCATCCGT 59.840 37.500 13.54 0.00 0.00 4.69
3143 5033 4.533919 TTCAAATTTGCATCCATCCGTT 57.466 36.364 13.54 0.00 0.00 4.44
3144 5034 4.108699 TCAAATTTGCATCCATCCGTTC 57.891 40.909 13.54 0.00 0.00 3.95
3145 5035 3.763360 TCAAATTTGCATCCATCCGTTCT 59.237 39.130 13.54 0.00 0.00 3.01
3146 5036 4.107622 CAAATTTGCATCCATCCGTTCTC 58.892 43.478 5.01 0.00 0.00 2.87
3147 5037 1.368641 TTTGCATCCATCCGTTCTCG 58.631 50.000 0.00 0.00 0.00 4.04
3148 5038 1.089481 TTGCATCCATCCGTTCTCGC 61.089 55.000 0.00 0.00 35.54 5.03
3149 5039 2.589492 GCATCCATCCGTTCTCGCG 61.589 63.158 0.00 0.00 35.54 5.87
3150 5040 2.279517 ATCCATCCGTTCTCGCGC 60.280 61.111 0.00 0.00 35.54 6.86
3151 5041 4.847516 TCCATCCGTTCTCGCGCG 62.848 66.667 26.76 26.76 35.54 6.86
3160 5050 4.907034 TCTCGCGCGGAGATTCGC 62.907 66.667 31.69 0.00 46.80 4.70
3167 5057 2.509336 CGGAGATTCGCGCTGGTT 60.509 61.111 5.56 0.00 0.00 3.67
3168 5058 2.100631 CGGAGATTCGCGCTGGTTT 61.101 57.895 5.56 0.00 0.00 3.27
3169 5059 1.635663 CGGAGATTCGCGCTGGTTTT 61.636 55.000 5.56 0.00 0.00 2.43
3170 5060 0.097150 GGAGATTCGCGCTGGTTTTC 59.903 55.000 5.56 0.00 0.00 2.29
3171 5061 1.079503 GAGATTCGCGCTGGTTTTCT 58.920 50.000 5.56 0.00 0.00 2.52
3172 5062 1.464997 GAGATTCGCGCTGGTTTTCTT 59.535 47.619 5.56 0.00 0.00 2.52
3173 5063 1.880027 AGATTCGCGCTGGTTTTCTTT 59.120 42.857 5.56 0.00 0.00 2.52
3174 5064 2.293399 AGATTCGCGCTGGTTTTCTTTT 59.707 40.909 5.56 0.00 0.00 2.27
3175 5065 2.570442 TTCGCGCTGGTTTTCTTTTT 57.430 40.000 5.56 0.00 0.00 1.94
3191 5081 1.008995 TTTTTCTTCGTGCTGGCGC 60.009 52.632 0.00 0.00 0.00 6.53
3192 5082 2.400896 TTTTTCTTCGTGCTGGCGCC 62.401 55.000 22.73 22.73 34.43 6.53
3199 5089 2.671619 GTGCTGGCGCCCTGTTTA 60.672 61.111 26.77 2.02 34.43 2.01
3200 5090 2.671619 TGCTGGCGCCCTGTTTAC 60.672 61.111 26.77 5.70 34.43 2.01
3201 5091 2.359975 GCTGGCGCCCTGTTTACT 60.360 61.111 26.77 0.00 0.00 2.24
3202 5092 2.399356 GCTGGCGCCCTGTTTACTC 61.399 63.158 26.77 0.00 0.00 2.59
3203 5093 1.296715 CTGGCGCCCTGTTTACTCT 59.703 57.895 26.77 0.00 0.00 3.24
3204 5094 1.003839 TGGCGCCCTGTTTACTCTG 60.004 57.895 26.77 0.00 0.00 3.35
3205 5095 1.745489 GGCGCCCTGTTTACTCTGG 60.745 63.158 18.11 0.00 0.00 3.86
3206 5096 1.003718 GCGCCCTGTTTACTCTGGT 60.004 57.895 0.00 0.00 0.00 4.00
3207 5097 0.605589 GCGCCCTGTTTACTCTGGTT 60.606 55.000 0.00 0.00 0.00 3.67
3208 5098 1.156736 CGCCCTGTTTACTCTGGTTG 58.843 55.000 0.00 0.00 0.00 3.77
3209 5099 1.534729 GCCCTGTTTACTCTGGTTGG 58.465 55.000 0.00 0.00 0.00 3.77
3210 5100 1.534729 CCCTGTTTACTCTGGTTGGC 58.465 55.000 0.00 0.00 0.00 4.52
3211 5101 1.534729 CCTGTTTACTCTGGTTGGCC 58.465 55.000 0.00 0.00 0.00 5.36
3212 5102 1.073923 CCTGTTTACTCTGGTTGGCCT 59.926 52.381 3.32 0.00 35.27 5.19
3213 5103 2.489073 CCTGTTTACTCTGGTTGGCCTT 60.489 50.000 3.32 0.00 35.27 4.35
3214 5104 3.222603 CTGTTTACTCTGGTTGGCCTTT 58.777 45.455 3.32 0.00 35.27 3.11
3215 5105 3.636764 CTGTTTACTCTGGTTGGCCTTTT 59.363 43.478 3.32 0.00 35.27 2.27
3216 5106 4.027437 TGTTTACTCTGGTTGGCCTTTTT 58.973 39.130 3.32 0.00 35.27 1.94
3239 5129 2.855660 CGGGTTCGGTTTTTCTTTGT 57.144 45.000 0.00 0.00 0.00 2.83
3240 5130 2.723209 CGGGTTCGGTTTTTCTTTGTC 58.277 47.619 0.00 0.00 0.00 3.18
3241 5131 2.356695 CGGGTTCGGTTTTTCTTTGTCT 59.643 45.455 0.00 0.00 0.00 3.41
3242 5132 3.547413 CGGGTTCGGTTTTTCTTTGTCTC 60.547 47.826 0.00 0.00 0.00 3.36
3243 5133 3.379057 GGGTTCGGTTTTTCTTTGTCTCA 59.621 43.478 0.00 0.00 0.00 3.27
3244 5134 4.142337 GGGTTCGGTTTTTCTTTGTCTCAA 60.142 41.667 0.00 0.00 0.00 3.02
3245 5135 4.796830 GGTTCGGTTTTTCTTTGTCTCAAC 59.203 41.667 0.00 0.00 0.00 3.18
3246 5136 4.625972 TCGGTTTTTCTTTGTCTCAACC 57.374 40.909 0.00 0.00 0.00 3.77
3247 5137 3.379057 TCGGTTTTTCTTTGTCTCAACCC 59.621 43.478 0.00 0.00 31.63 4.11
3248 5138 3.702330 GGTTTTTCTTTGTCTCAACCCG 58.298 45.455 0.00 0.00 0.00 5.28
3249 5139 3.129813 GGTTTTTCTTTGTCTCAACCCGT 59.870 43.478 0.00 0.00 0.00 5.28
3250 5140 4.336153 GGTTTTTCTTTGTCTCAACCCGTA 59.664 41.667 0.00 0.00 0.00 4.02
3251 5141 5.163632 GGTTTTTCTTTGTCTCAACCCGTAA 60.164 40.000 0.00 0.00 0.00 3.18
3252 5142 5.488645 TTTTCTTTGTCTCAACCCGTAAC 57.511 39.130 0.00 0.00 0.00 2.50
3253 5143 3.116079 TCTTTGTCTCAACCCGTAACC 57.884 47.619 0.00 0.00 0.00 2.85
3254 5144 1.796459 CTTTGTCTCAACCCGTAACCG 59.204 52.381 0.00 0.00 0.00 4.44
3255 5145 0.600782 TTGTCTCAACCCGTAACCGC 60.601 55.000 0.00 0.00 0.00 5.68
3256 5146 1.739196 GTCTCAACCCGTAACCGCC 60.739 63.158 0.00 0.00 0.00 6.13
3257 5147 2.435410 CTCAACCCGTAACCGCCC 60.435 66.667 0.00 0.00 0.00 6.13
3258 5148 3.963687 CTCAACCCGTAACCGCCCC 62.964 68.421 0.00 0.00 0.00 5.80
3276 5166 4.308458 CGACCCGGCACTGTTGGA 62.308 66.667 0.00 0.00 0.00 3.53
3277 5167 2.351276 GACCCGGCACTGTTGGAT 59.649 61.111 0.00 0.00 0.00 3.41
3278 5168 1.303317 GACCCGGCACTGTTGGATT 60.303 57.895 0.00 0.00 0.00 3.01
3279 5169 0.893727 GACCCGGCACTGTTGGATTT 60.894 55.000 0.00 0.00 0.00 2.17
3280 5170 0.469144 ACCCGGCACTGTTGGATTTT 60.469 50.000 0.00 0.00 0.00 1.82
3281 5171 0.038343 CCCGGCACTGTTGGATTTTG 60.038 55.000 0.00 0.00 0.00 2.44
3282 5172 0.673437 CCGGCACTGTTGGATTTTGT 59.327 50.000 0.00 0.00 0.00 2.83
3283 5173 1.335872 CCGGCACTGTTGGATTTTGTC 60.336 52.381 0.00 0.00 0.00 3.18
3297 5187 6.452244 GGATTTTGTCCTGTTCGAATTTTG 57.548 37.500 0.00 0.00 44.16 2.44
3298 5188 5.405269 GGATTTTGTCCTGTTCGAATTTTGG 59.595 40.000 0.00 1.79 44.16 3.28
3299 5189 5.584253 TTTTGTCCTGTTCGAATTTTGGA 57.416 34.783 0.00 4.28 0.00 3.53
3300 5190 4.829064 TTGTCCTGTTCGAATTTTGGAG 57.171 40.909 0.00 0.00 0.00 3.86
3301 5191 2.552315 TGTCCTGTTCGAATTTTGGAGC 59.448 45.455 0.00 3.56 0.00 4.70
3302 5192 1.804151 TCCTGTTCGAATTTTGGAGCG 59.196 47.619 0.00 0.00 0.00 5.03
3303 5193 1.135689 CCTGTTCGAATTTTGGAGCGG 60.136 52.381 0.00 0.00 0.00 5.52
3304 5194 0.878416 TGTTCGAATTTTGGAGCGGG 59.122 50.000 0.00 0.00 0.00 6.13
3305 5195 0.879090 GTTCGAATTTTGGAGCGGGT 59.121 50.000 0.00 0.00 0.00 5.28
3306 5196 0.878416 TTCGAATTTTGGAGCGGGTG 59.122 50.000 0.00 0.00 0.00 4.61
3307 5197 0.250553 TCGAATTTTGGAGCGGGTGT 60.251 50.000 0.00 0.00 0.00 4.16
3308 5198 0.168128 CGAATTTTGGAGCGGGTGTC 59.832 55.000 0.00 0.00 0.00 3.67
3309 5199 0.168128 GAATTTTGGAGCGGGTGTCG 59.832 55.000 0.00 0.00 42.76 4.35
3310 5200 0.536460 AATTTTGGAGCGGGTGTCGT 60.536 50.000 0.00 0.00 41.72 4.34
3311 5201 0.536460 ATTTTGGAGCGGGTGTCGTT 60.536 50.000 0.00 0.00 41.72 3.85
3312 5202 0.748729 TTTTGGAGCGGGTGTCGTTT 60.749 50.000 0.00 0.00 41.72 3.60
3313 5203 1.161563 TTTGGAGCGGGTGTCGTTTC 61.162 55.000 0.00 0.00 41.72 2.78
3314 5204 2.741211 GGAGCGGGTGTCGTTTCC 60.741 66.667 0.00 0.00 41.72 3.13
3315 5205 2.741211 GAGCGGGTGTCGTTTCCC 60.741 66.667 0.00 0.00 41.72 3.97
3316 5206 4.324991 AGCGGGTGTCGTTTCCCC 62.325 66.667 0.00 0.00 40.54 4.81
3317 5207 4.324991 GCGGGTGTCGTTTCCCCT 62.325 66.667 0.00 0.00 40.54 4.79
3318 5208 2.428622 CGGGTGTCGTTTCCCCTT 59.571 61.111 0.00 0.00 40.54 3.95
3319 5209 1.228033 CGGGTGTCGTTTCCCCTTT 60.228 57.895 0.00 0.00 40.54 3.11
3320 5210 1.232621 CGGGTGTCGTTTCCCCTTTC 61.233 60.000 0.00 0.00 40.54 2.62
3321 5211 1.232621 GGGTGTCGTTTCCCCTTTCG 61.233 60.000 0.00 0.00 37.89 3.46
3322 5212 0.533531 GGTGTCGTTTCCCCTTTCGT 60.534 55.000 0.00 0.00 0.00 3.85
3323 5213 1.302366 GTGTCGTTTCCCCTTTCGTT 58.698 50.000 0.00 0.00 0.00 3.85
3324 5214 1.672363 GTGTCGTTTCCCCTTTCGTTT 59.328 47.619 0.00 0.00 0.00 3.60
3325 5215 1.671845 TGTCGTTTCCCCTTTCGTTTG 59.328 47.619 0.00 0.00 0.00 2.93
3326 5216 1.002142 GTCGTTTCCCCTTTCGTTTGG 60.002 52.381 0.00 0.00 0.00 3.28
3327 5217 0.312729 CGTTTCCCCTTTCGTTTGGG 59.687 55.000 0.00 0.00 42.98 4.12
3328 5218 1.405872 GTTTCCCCTTTCGTTTGGGT 58.594 50.000 8.15 0.00 41.82 4.51
3329 5219 1.338973 GTTTCCCCTTTCGTTTGGGTC 59.661 52.381 8.15 0.00 41.82 4.46
3330 5220 0.551879 TTCCCCTTTCGTTTGGGTCA 59.448 50.000 8.15 0.00 41.82 4.02
3331 5221 0.774908 TCCCCTTTCGTTTGGGTCAT 59.225 50.000 8.15 0.00 41.82 3.06
3332 5222 1.146152 TCCCCTTTCGTTTGGGTCATT 59.854 47.619 8.15 0.00 41.82 2.57
3333 5223 1.544246 CCCCTTTCGTTTGGGTCATTC 59.456 52.381 8.15 0.00 41.82 2.67
3334 5224 2.514803 CCCTTTCGTTTGGGTCATTCT 58.485 47.619 0.00 0.00 38.65 2.40
3335 5225 2.228822 CCCTTTCGTTTGGGTCATTCTG 59.771 50.000 0.00 0.00 38.65 3.02
3336 5226 2.884639 CCTTTCGTTTGGGTCATTCTGT 59.115 45.455 0.00 0.00 0.00 3.41
3337 5227 3.317993 CCTTTCGTTTGGGTCATTCTGTT 59.682 43.478 0.00 0.00 0.00 3.16
3338 5228 4.202111 CCTTTCGTTTGGGTCATTCTGTTT 60.202 41.667 0.00 0.00 0.00 2.83
3339 5229 3.980646 TCGTTTGGGTCATTCTGTTTG 57.019 42.857 0.00 0.00 0.00 2.93
3340 5230 2.621055 TCGTTTGGGTCATTCTGTTTGG 59.379 45.455 0.00 0.00 0.00 3.28
3341 5231 2.621055 CGTTTGGGTCATTCTGTTTGGA 59.379 45.455 0.00 0.00 0.00 3.53
3342 5232 3.255642 CGTTTGGGTCATTCTGTTTGGAT 59.744 43.478 0.00 0.00 0.00 3.41
3343 5233 4.457603 CGTTTGGGTCATTCTGTTTGGATA 59.542 41.667 0.00 0.00 0.00 2.59
3344 5234 5.048364 CGTTTGGGTCATTCTGTTTGGATAA 60.048 40.000 0.00 0.00 0.00 1.75
3345 5235 6.389906 GTTTGGGTCATTCTGTTTGGATAAG 58.610 40.000 0.00 0.00 0.00 1.73
3346 5236 4.599041 TGGGTCATTCTGTTTGGATAAGG 58.401 43.478 0.00 0.00 0.00 2.69
3347 5237 3.381590 GGGTCATTCTGTTTGGATAAGGC 59.618 47.826 0.00 0.00 0.00 4.35
3348 5238 3.381590 GGTCATTCTGTTTGGATAAGGCC 59.618 47.826 0.00 0.00 0.00 5.19
3349 5239 3.065371 GTCATTCTGTTTGGATAAGGCCG 59.935 47.826 0.00 0.00 0.00 6.13
3350 5240 3.054728 TCATTCTGTTTGGATAAGGCCGA 60.055 43.478 0.00 0.00 0.00 5.54
3351 5241 2.691409 TCTGTTTGGATAAGGCCGAG 57.309 50.000 0.00 0.00 0.00 4.63
3352 5242 1.209504 TCTGTTTGGATAAGGCCGAGG 59.790 52.381 0.00 0.00 0.00 4.63
3353 5243 0.254747 TGTTTGGATAAGGCCGAGGG 59.745 55.000 0.00 0.00 0.00 4.30
3354 5244 0.544697 GTTTGGATAAGGCCGAGGGA 59.455 55.000 0.00 0.00 0.00 4.20
3355 5245 0.837272 TTTGGATAAGGCCGAGGGAG 59.163 55.000 0.00 0.00 0.00 4.30
3356 5246 0.031515 TTGGATAAGGCCGAGGGAGA 60.032 55.000 0.00 0.00 0.00 3.71
3357 5247 0.470080 TGGATAAGGCCGAGGGAGAG 60.470 60.000 0.00 0.00 0.00 3.20
3358 5248 0.178958 GGATAAGGCCGAGGGAGAGA 60.179 60.000 0.00 0.00 0.00 3.10
3359 5249 1.253100 GATAAGGCCGAGGGAGAGAG 58.747 60.000 0.00 0.00 0.00 3.20
3360 5250 0.830023 ATAAGGCCGAGGGAGAGAGC 60.830 60.000 0.00 0.00 0.00 4.09
3361 5251 1.939082 TAAGGCCGAGGGAGAGAGCT 61.939 60.000 0.00 0.00 0.00 4.09
3362 5252 3.223589 GGCCGAGGGAGAGAGCTC 61.224 72.222 5.27 5.27 40.54 4.09
3363 5253 3.591835 GCCGAGGGAGAGAGCTCG 61.592 72.222 8.37 0.00 42.25 5.03
3364 5254 2.190843 CCGAGGGAGAGAGCTCGA 59.809 66.667 8.37 0.00 42.25 4.04
3365 5255 1.891919 CCGAGGGAGAGAGCTCGAG 60.892 68.421 8.45 8.45 42.25 4.04
3366 5256 2.542907 CGAGGGAGAGAGCTCGAGC 61.543 68.421 30.01 30.01 42.25 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 283 1.645710 CAGTGGTGGGAGTAGAACCT 58.354 55.000 0.00 0.00 34.90 3.50
536 537 1.515954 GGAGAAATCGGGCTCGTCA 59.484 57.895 5.57 0.00 37.69 4.35
592 593 2.032426 GGTTTTCGGAACAATGTGTCGT 59.968 45.455 8.09 0.00 0.00 4.34
593 594 2.289547 AGGTTTTCGGAACAATGTGTCG 59.710 45.455 0.00 2.93 0.00 4.35
594 595 3.066203 ACAGGTTTTCGGAACAATGTGTC 59.934 43.478 9.90 0.00 0.00 3.67
595 596 3.020984 ACAGGTTTTCGGAACAATGTGT 58.979 40.909 9.90 0.00 0.00 3.72
663 674 4.607293 TGGATGTCTATATGGCACTGAC 57.393 45.455 0.00 0.00 30.59 3.51
747 767 6.403418 CCAAGCTTCAGATTCATTCAGAACTC 60.403 42.308 0.00 0.00 39.49 3.01
755 775 6.226052 GGAAAAACCAAGCTTCAGATTCATT 58.774 36.000 0.00 0.00 38.79 2.57
772 792 0.032952 GCGGAAACAGGGGGAAAAAC 59.967 55.000 0.00 0.00 0.00 2.43
789 810 1.296056 AAAACTGTCGAATCCCCGCG 61.296 55.000 0.00 0.00 0.00 6.46
812 833 7.518161 TCAGTGCTACTTTTACATGAATTTCG 58.482 34.615 0.00 0.00 0.00 3.46
828 1077 4.985409 GGTAGCTGTATGATTCAGTGCTAC 59.015 45.833 21.58 21.58 45.91 3.58
847 1096 5.178797 ACTGTAATTTGTAGCTGCTGGTAG 58.821 41.667 13.43 0.71 0.00 3.18
876 1125 6.931281 TGAAACCAGAATCAGAAGTCAACTAG 59.069 38.462 0.00 0.00 0.00 2.57
877 1126 6.826668 TGAAACCAGAATCAGAAGTCAACTA 58.173 36.000 0.00 0.00 0.00 2.24
974 1236 1.000359 CCTGGTGGATTTGGGGACC 60.000 63.158 0.00 0.00 43.26 4.46
1644 1922 3.075005 AGTAGGCCCGTGACGCAT 61.075 61.111 0.00 0.00 0.00 4.73
2026 2307 2.401766 CCACCAGATGCCTCGTTGC 61.402 63.158 0.00 0.00 0.00 4.17
2058 2339 4.986587 TCACCGTCGTCGTTGCCG 62.987 66.667 0.71 0.00 35.01 5.69
2073 2354 4.651962 TCTCCATCACCATTATTACCGTCA 59.348 41.667 0.00 0.00 0.00 4.35
2380 2676 1.147824 CAATGGATCTCGGCTGGCT 59.852 57.895 0.00 0.00 0.00 4.75
2382 2678 1.147824 AGCAATGGATCTCGGCTGG 59.852 57.895 0.00 0.00 32.76 4.85
2384 2680 0.179062 GACAGCAATGGATCTCGGCT 60.179 55.000 0.00 0.00 34.64 5.52
2386 2682 0.103026 TCGACAGCAATGGATCTCGG 59.897 55.000 0.00 0.00 0.00 4.63
2456 2756 0.755079 TGATGATCAGAAGAGGCCGG 59.245 55.000 0.09 0.00 0.00 6.13
2484 2784 1.401199 GAAGAAAGGCAGATGCTCAGC 59.599 52.381 4.59 0.00 41.70 4.26
2567 2869 0.810031 ATCACTACGACCGGCAATGC 60.810 55.000 0.00 0.00 0.00 3.56
2573 2875 0.179084 ATTGCCATCACTACGACCGG 60.179 55.000 0.00 0.00 0.00 5.28
2575 2877 1.064060 GCAATTGCCATCACTACGACC 59.936 52.381 20.06 0.00 34.31 4.79
2576 2878 2.458592 GCAATTGCCATCACTACGAC 57.541 50.000 20.06 0.00 34.31 4.34
2589 2898 1.386533 AGGAGATCTTGCGGCAATTG 58.613 50.000 16.80 5.72 0.00 2.32
2596 2905 5.401033 CAAGTTCATAAGGAGATCTTGCG 57.599 43.478 0.00 0.00 36.55 4.85
2626 2935 0.390735 AAGGCGTCGGTTACATGGAC 60.391 55.000 0.00 0.00 0.00 4.02
2638 2997 1.315257 ATTCCACATGCCAAGGCGTC 61.315 55.000 2.09 0.00 45.51 5.19
2665 3024 3.131933 AGAGTACAGACCATCACATGAGC 59.868 47.826 0.00 0.00 0.00 4.26
2675 3036 0.809385 GCGCTACAGAGTACAGACCA 59.191 55.000 0.00 0.00 0.00 4.02
2676 3037 0.100861 GGCGCTACAGAGTACAGACC 59.899 60.000 7.64 0.00 0.00 3.85
2690 3051 1.317613 TCATCAAACTTGTTGGCGCT 58.682 45.000 7.64 0.00 0.00 5.92
2692 3053 5.289193 CCAAATATCATCAAACTTGTTGGCG 59.711 40.000 1.69 0.00 0.00 5.69
2726 3145 2.467826 GCCAGCTCCATCTTCGTGC 61.468 63.158 0.00 0.00 0.00 5.34
2765 3189 0.879090 GAAGGTAAGGTGTTTGCCGG 59.121 55.000 0.00 0.00 45.35 6.13
2773 3197 3.438297 ACATCGATCGAAGGTAAGGTG 57.562 47.619 23.50 15.15 0.00 4.00
2778 3202 3.627123 TCGGTAAACATCGATCGAAGGTA 59.373 43.478 23.50 11.46 0.00 3.08
2784 3208 4.890654 CGAAAAATCGGTAAACATCGATCG 59.109 41.667 9.36 9.36 44.10 3.69
2796 3220 1.129811 GATGGAACGCGAAAAATCGGT 59.870 47.619 15.93 0.00 0.00 4.69
2804 3230 1.529438 GTTCACAAGATGGAACGCGAA 59.471 47.619 15.93 0.00 34.69 4.70
2805 3231 1.144969 GTTCACAAGATGGAACGCGA 58.855 50.000 15.93 0.00 34.69 5.87
2807 3233 1.523758 AGGTTCACAAGATGGAACGC 58.476 50.000 0.00 0.00 43.29 4.84
2808 3234 2.484264 GGAAGGTTCACAAGATGGAACG 59.516 50.000 0.00 0.00 43.29 3.95
2809 3235 3.486383 TGGAAGGTTCACAAGATGGAAC 58.514 45.455 0.00 0.00 42.00 3.62
2810 3236 3.874383 TGGAAGGTTCACAAGATGGAA 57.126 42.857 0.00 0.00 0.00 3.53
2812 3238 3.445096 GGAATGGAAGGTTCACAAGATGG 59.555 47.826 0.00 0.00 0.00 3.51
2813 3239 4.081406 TGGAATGGAAGGTTCACAAGATG 58.919 43.478 0.00 0.00 0.00 2.90
2814 3240 4.387026 TGGAATGGAAGGTTCACAAGAT 57.613 40.909 0.00 0.00 0.00 2.40
2815 3241 3.874383 TGGAATGGAAGGTTCACAAGA 57.126 42.857 0.00 0.00 0.00 3.02
2816 3242 4.082026 GGAATGGAATGGAAGGTTCACAAG 60.082 45.833 0.00 0.00 0.00 3.16
2818 3244 3.181424 TGGAATGGAATGGAAGGTTCACA 60.181 43.478 0.00 0.00 0.00 3.58
2820 3246 3.824001 TGGAATGGAATGGAAGGTTCA 57.176 42.857 0.00 0.00 0.00 3.18
2821 3247 3.181472 GCATGGAATGGAATGGAAGGTTC 60.181 47.826 0.00 0.00 46.86 3.62
2822 3248 2.767960 GCATGGAATGGAATGGAAGGTT 59.232 45.455 0.00 0.00 46.86 3.50
2823 3249 2.023695 AGCATGGAATGGAATGGAAGGT 60.024 45.455 0.00 0.00 46.86 3.50
2825 3251 3.028850 ACAGCATGGAATGGAATGGAAG 58.971 45.455 0.00 0.00 46.86 3.46
2826 3252 2.761767 CACAGCATGGAATGGAATGGAA 59.238 45.455 0.00 0.00 46.86 3.53
2828 3254 2.380941 TCACAGCATGGAATGGAATGG 58.619 47.619 0.00 0.00 46.86 3.16
2829 3255 3.446161 AGTTCACAGCATGGAATGGAATG 59.554 43.478 0.00 0.00 46.86 2.67
2843 3354 1.537202 GCTAAGCCCACAAGTTCACAG 59.463 52.381 0.00 0.00 0.00 3.66
2855 3366 2.819608 TGACAACAATCAAGCTAAGCCC 59.180 45.455 0.00 0.00 0.00 5.19
2858 3369 6.738114 TCCTTTTGACAACAATCAAGCTAAG 58.262 36.000 0.00 0.00 39.68 2.18
2900 3431 3.069443 ACAATTGCCGGTCAAGAAAACAT 59.931 39.130 14.95 0.00 38.22 2.71
2906 3437 1.606668 GTTCACAATTGCCGGTCAAGA 59.393 47.619 14.95 6.02 38.22 3.02
2908 3439 0.671251 GGTTCACAATTGCCGGTCAA 59.329 50.000 12.63 12.63 39.32 3.18
2909 3440 0.179004 AGGTTCACAATTGCCGGTCA 60.179 50.000 5.05 0.00 0.00 4.02
2910 3441 0.240945 CAGGTTCACAATTGCCGGTC 59.759 55.000 5.05 0.00 0.00 4.79
2911 3442 0.467290 ACAGGTTCACAATTGCCGGT 60.467 50.000 5.05 2.58 0.00 5.28
2923 4793 1.145803 GCGACCAGTACAACAGGTTC 58.854 55.000 0.00 0.00 38.17 3.62
2924 4794 0.756903 AGCGACCAGTACAACAGGTT 59.243 50.000 0.00 0.00 38.17 3.50
2931 4801 0.032952 GTTGGACAGCGACCAGTACA 59.967 55.000 0.00 0.00 38.70 2.90
2932 4802 0.317479 AGTTGGACAGCGACCAGTAC 59.683 55.000 0.00 0.00 38.70 2.73
2940 4810 1.800805 AATCAGACAGTTGGACAGCG 58.199 50.000 0.00 0.00 0.00 5.18
2946 4816 4.377022 CCGACGTTAAAATCAGACAGTTGG 60.377 45.833 0.00 0.00 0.00 3.77
2947 4817 4.210537 ACCGACGTTAAAATCAGACAGTTG 59.789 41.667 0.00 0.00 0.00 3.16
2948 4818 4.374399 ACCGACGTTAAAATCAGACAGTT 58.626 39.130 0.00 0.00 0.00 3.16
2949 4819 3.986277 ACCGACGTTAAAATCAGACAGT 58.014 40.909 0.00 0.00 0.00 3.55
2950 4820 4.985044 AACCGACGTTAAAATCAGACAG 57.015 40.909 0.00 0.00 0.00 3.51
2951 4821 5.738118 AAAACCGACGTTAAAATCAGACA 57.262 34.783 0.00 0.00 0.00 3.41
2952 4822 8.718047 AAATAAAACCGACGTTAAAATCAGAC 57.282 30.769 0.00 0.00 0.00 3.51
2963 4852 3.808726 TGCACAGTAAATAAAACCGACGT 59.191 39.130 0.00 0.00 0.00 4.34
3079 4969 6.128282 ACACTTGACTGTTAATAGCAAATCCG 60.128 38.462 0.00 0.00 0.00 4.18
3081 4971 9.463443 AAAACACTTGACTGTTAATAGCAAATC 57.537 29.630 0.00 0.00 33.03 2.17
3086 4976 8.850454 TTGAAAAACACTTGACTGTTAATAGC 57.150 30.769 0.00 0.00 33.03 2.97
3089 4979 9.019764 CGAATTGAAAAACACTTGACTGTTAAT 57.980 29.630 0.00 0.00 33.03 1.40
3090 4980 8.024285 ACGAATTGAAAAACACTTGACTGTTAA 58.976 29.630 0.00 0.00 33.03 2.01
3091 4981 7.531716 ACGAATTGAAAAACACTTGACTGTTA 58.468 30.769 0.00 0.00 33.03 2.41
3092 4982 6.386654 ACGAATTGAAAAACACTTGACTGTT 58.613 32.000 0.00 0.00 35.83 3.16
3093 4983 5.949735 ACGAATTGAAAAACACTTGACTGT 58.050 33.333 0.00 0.00 0.00 3.55
3094 4984 6.027131 TGACGAATTGAAAAACACTTGACTG 58.973 36.000 0.00 0.00 0.00 3.51
3095 4985 6.189677 TGACGAATTGAAAAACACTTGACT 57.810 33.333 0.00 0.00 0.00 3.41
3096 4986 6.690957 TGATGACGAATTGAAAAACACTTGAC 59.309 34.615 0.00 0.00 0.00 3.18
3097 4987 6.790282 TGATGACGAATTGAAAAACACTTGA 58.210 32.000 0.00 0.00 0.00 3.02
3098 4988 7.627585 ATGATGACGAATTGAAAAACACTTG 57.372 32.000 0.00 0.00 0.00 3.16
3099 4989 7.920151 TGAATGATGACGAATTGAAAAACACTT 59.080 29.630 0.00 0.00 0.00 3.16
3100 4990 7.424803 TGAATGATGACGAATTGAAAAACACT 58.575 30.769 0.00 0.00 0.00 3.55
3101 4991 7.621832 TGAATGATGACGAATTGAAAAACAC 57.378 32.000 0.00 0.00 0.00 3.32
3102 4992 8.640091 TTTGAATGATGACGAATTGAAAAACA 57.360 26.923 0.00 0.00 0.00 2.83
3106 4996 8.222433 GCAAATTTGAATGATGACGAATTGAAA 58.778 29.630 22.31 0.00 32.56 2.69
3107 4997 7.384387 TGCAAATTTGAATGATGACGAATTGAA 59.616 29.630 22.31 0.00 32.56 2.69
3108 4998 6.867293 TGCAAATTTGAATGATGACGAATTGA 59.133 30.769 22.31 0.00 32.56 2.57
3109 4999 7.051422 TGCAAATTTGAATGATGACGAATTG 57.949 32.000 22.31 0.00 32.56 2.32
3110 5000 7.010738 GGATGCAAATTTGAATGATGACGAATT 59.989 33.333 22.31 0.00 33.28 2.17
3111 5001 6.477688 GGATGCAAATTTGAATGATGACGAAT 59.522 34.615 22.31 0.00 0.00 3.34
3112 5002 5.806502 GGATGCAAATTTGAATGATGACGAA 59.193 36.000 22.31 0.00 0.00 3.85
3113 5003 5.105837 TGGATGCAAATTTGAATGATGACGA 60.106 36.000 22.31 0.00 0.00 4.20
3114 5004 5.103687 TGGATGCAAATTTGAATGATGACG 58.896 37.500 22.31 0.00 0.00 4.35
3115 5005 6.202188 GGATGGATGCAAATTTGAATGATGAC 59.798 38.462 22.31 4.43 0.00 3.06
3116 5006 6.285224 GGATGGATGCAAATTTGAATGATGA 58.715 36.000 22.31 0.92 0.00 2.92
3117 5007 5.176774 CGGATGGATGCAAATTTGAATGATG 59.823 40.000 22.31 0.01 0.00 3.07
3118 5008 5.163385 ACGGATGGATGCAAATTTGAATGAT 60.163 36.000 22.31 10.63 0.00 2.45
3119 5009 4.160065 ACGGATGGATGCAAATTTGAATGA 59.840 37.500 22.31 6.17 0.00 2.57
3120 5010 4.435425 ACGGATGGATGCAAATTTGAATG 58.565 39.130 22.31 6.38 0.00 2.67
3121 5011 4.741321 ACGGATGGATGCAAATTTGAAT 57.259 36.364 22.31 17.18 0.00 2.57
3122 5012 4.220382 AGAACGGATGGATGCAAATTTGAA 59.780 37.500 22.31 12.38 0.00 2.69
3123 5013 3.763360 AGAACGGATGGATGCAAATTTGA 59.237 39.130 22.31 7.50 0.00 2.69
3124 5014 4.107622 GAGAACGGATGGATGCAAATTTG 58.892 43.478 14.03 14.03 0.00 2.32
3125 5015 3.181497 CGAGAACGGATGGATGCAAATTT 60.181 43.478 0.00 0.00 35.72 1.82
3126 5016 2.355756 CGAGAACGGATGGATGCAAATT 59.644 45.455 0.00 0.00 35.72 1.82
3127 5017 1.942657 CGAGAACGGATGGATGCAAAT 59.057 47.619 0.00 0.00 35.72 2.32
3128 5018 1.368641 CGAGAACGGATGGATGCAAA 58.631 50.000 0.00 0.00 35.72 3.68
3129 5019 1.089481 GCGAGAACGGATGGATGCAA 61.089 55.000 0.00 0.00 40.15 4.08
3130 5020 1.521457 GCGAGAACGGATGGATGCA 60.521 57.895 0.00 0.00 40.15 3.96
3131 5021 2.589492 CGCGAGAACGGATGGATGC 61.589 63.158 0.00 0.00 40.15 3.91
3132 5022 2.589492 GCGCGAGAACGGATGGATG 61.589 63.158 12.10 0.00 40.15 3.51
3133 5023 2.279517 GCGCGAGAACGGATGGAT 60.280 61.111 12.10 0.00 40.15 3.41
3134 5024 4.847516 CGCGCGAGAACGGATGGA 62.848 66.667 28.94 0.00 40.15 3.41
3150 5040 1.635663 AAAACCAGCGCGAATCTCCG 61.636 55.000 12.10 0.00 0.00 4.63
3151 5041 0.097150 GAAAACCAGCGCGAATCTCC 59.903 55.000 12.10 0.00 0.00 3.71
3152 5042 1.079503 AGAAAACCAGCGCGAATCTC 58.920 50.000 12.10 0.00 0.00 2.75
3153 5043 1.523758 AAGAAAACCAGCGCGAATCT 58.476 45.000 12.10 0.00 0.00 2.40
3154 5044 2.331809 AAAGAAAACCAGCGCGAATC 57.668 45.000 12.10 0.00 0.00 2.52
3155 5045 2.793278 AAAAGAAAACCAGCGCGAAT 57.207 40.000 12.10 0.00 0.00 3.34
3156 5046 2.570442 AAAAAGAAAACCAGCGCGAA 57.430 40.000 12.10 0.00 0.00 4.70
3173 5063 1.008995 GCGCCAGCACGAAGAAAAA 60.009 52.632 0.00 0.00 44.35 1.94
3174 5064 2.637025 GCGCCAGCACGAAGAAAA 59.363 55.556 0.00 0.00 44.35 2.29
3184 5074 2.359975 AGTAAACAGGGCGCCAGC 60.360 61.111 30.85 12.35 44.18 4.85
3185 5075 1.021390 CAGAGTAAACAGGGCGCCAG 61.021 60.000 30.85 22.56 0.00 4.85
3186 5076 1.003839 CAGAGTAAACAGGGCGCCA 60.004 57.895 30.85 2.40 0.00 5.69
3187 5077 1.745489 CCAGAGTAAACAGGGCGCC 60.745 63.158 21.18 21.18 0.00 6.53
3188 5078 0.605589 AACCAGAGTAAACAGGGCGC 60.606 55.000 0.00 0.00 0.00 6.53
3189 5079 1.156736 CAACCAGAGTAAACAGGGCG 58.843 55.000 0.00 0.00 0.00 6.13
3190 5080 1.534729 CCAACCAGAGTAAACAGGGC 58.465 55.000 0.00 0.00 0.00 5.19
3191 5081 1.534729 GCCAACCAGAGTAAACAGGG 58.465 55.000 0.00 0.00 0.00 4.45
3192 5082 1.073923 AGGCCAACCAGAGTAAACAGG 59.926 52.381 5.01 0.00 39.06 4.00
3193 5083 2.568623 AGGCCAACCAGAGTAAACAG 57.431 50.000 5.01 0.00 39.06 3.16
3194 5084 3.306472 AAAGGCCAACCAGAGTAAACA 57.694 42.857 5.01 0.00 39.06 2.83
3195 5085 4.665833 AAAAAGGCCAACCAGAGTAAAC 57.334 40.909 5.01 0.00 39.06 2.01
3220 5110 2.356695 AGACAAAGAAAAACCGAACCCG 59.643 45.455 0.00 0.00 0.00 5.28
3221 5111 3.379057 TGAGACAAAGAAAAACCGAACCC 59.621 43.478 0.00 0.00 0.00 4.11
3222 5112 4.625972 TGAGACAAAGAAAAACCGAACC 57.374 40.909 0.00 0.00 0.00 3.62
3223 5113 4.796830 GGTTGAGACAAAGAAAAACCGAAC 59.203 41.667 0.00 0.00 0.00 3.95
3224 5114 4.142337 GGGTTGAGACAAAGAAAAACCGAA 60.142 41.667 0.00 0.00 38.34 4.30
3225 5115 3.379057 GGGTTGAGACAAAGAAAAACCGA 59.621 43.478 0.00 0.00 38.34 4.69
3226 5116 3.702330 GGGTTGAGACAAAGAAAAACCG 58.298 45.455 0.00 0.00 38.34 4.44
3227 5117 3.129813 ACGGGTTGAGACAAAGAAAAACC 59.870 43.478 0.00 0.00 37.03 3.27
3228 5118 4.365899 ACGGGTTGAGACAAAGAAAAAC 57.634 40.909 0.00 0.00 0.00 2.43
3229 5119 5.163632 GGTTACGGGTTGAGACAAAGAAAAA 60.164 40.000 0.00 0.00 0.00 1.94
3230 5120 4.336153 GGTTACGGGTTGAGACAAAGAAAA 59.664 41.667 0.00 0.00 0.00 2.29
3231 5121 3.878699 GGTTACGGGTTGAGACAAAGAAA 59.121 43.478 0.00 0.00 0.00 2.52
3232 5122 3.469739 GGTTACGGGTTGAGACAAAGAA 58.530 45.455 0.00 0.00 0.00 2.52
3233 5123 2.546373 CGGTTACGGGTTGAGACAAAGA 60.546 50.000 0.00 0.00 36.18 2.52
3234 5124 1.796459 CGGTTACGGGTTGAGACAAAG 59.204 52.381 0.00 0.00 36.18 2.77
3235 5125 1.868469 CGGTTACGGGTTGAGACAAA 58.132 50.000 0.00 0.00 36.18 2.83
3236 5126 0.600782 GCGGTTACGGGTTGAGACAA 60.601 55.000 0.00 0.00 41.36 3.18
3237 5127 1.005867 GCGGTTACGGGTTGAGACA 60.006 57.895 0.00 0.00 41.36 3.41
3238 5128 1.739196 GGCGGTTACGGGTTGAGAC 60.739 63.158 0.00 0.00 41.36 3.36
3239 5129 2.658422 GGCGGTTACGGGTTGAGA 59.342 61.111 0.00 0.00 41.36 3.27
3240 5130 2.435410 GGGCGGTTACGGGTTGAG 60.435 66.667 0.00 0.00 41.36 3.02
3241 5131 4.019312 GGGGCGGTTACGGGTTGA 62.019 66.667 0.00 0.00 41.36 3.18
3259 5149 3.605749 ATCCAACAGTGCCGGGTCG 62.606 63.158 2.18 0.00 0.00 4.79
3260 5150 0.893727 AAATCCAACAGTGCCGGGTC 60.894 55.000 2.18 0.00 0.00 4.46
3261 5151 0.469144 AAAATCCAACAGTGCCGGGT 60.469 50.000 2.18 0.00 0.00 5.28
3262 5152 0.038343 CAAAATCCAACAGTGCCGGG 60.038 55.000 2.18 0.00 0.00 5.73
3263 5153 0.673437 ACAAAATCCAACAGTGCCGG 59.327 50.000 0.00 0.00 0.00 6.13
3264 5154 2.050477 GACAAAATCCAACAGTGCCG 57.950 50.000 0.00 0.00 0.00 5.69
3275 5165 6.212955 TCCAAAATTCGAACAGGACAAAATC 58.787 36.000 0.00 0.00 0.00 2.17
3276 5166 6.155475 TCCAAAATTCGAACAGGACAAAAT 57.845 33.333 0.00 0.00 0.00 1.82
3277 5167 5.584253 TCCAAAATTCGAACAGGACAAAA 57.416 34.783 0.00 0.00 0.00 2.44
3278 5168 4.499019 GCTCCAAAATTCGAACAGGACAAA 60.499 41.667 0.00 0.00 0.00 2.83
3279 5169 3.004315 GCTCCAAAATTCGAACAGGACAA 59.996 43.478 0.00 0.00 0.00 3.18
3280 5170 2.552315 GCTCCAAAATTCGAACAGGACA 59.448 45.455 0.00 0.00 0.00 4.02
3281 5171 2.412847 CGCTCCAAAATTCGAACAGGAC 60.413 50.000 0.00 0.85 0.00 3.85
3282 5172 1.804151 CGCTCCAAAATTCGAACAGGA 59.196 47.619 0.00 4.79 0.00 3.86
3283 5173 1.135689 CCGCTCCAAAATTCGAACAGG 60.136 52.381 0.00 0.00 0.00 4.00
3284 5174 1.135689 CCCGCTCCAAAATTCGAACAG 60.136 52.381 0.00 0.00 0.00 3.16
3285 5175 0.878416 CCCGCTCCAAAATTCGAACA 59.122 50.000 0.00 0.00 0.00 3.18
3286 5176 0.879090 ACCCGCTCCAAAATTCGAAC 59.121 50.000 0.00 0.00 0.00 3.95
3287 5177 0.878416 CACCCGCTCCAAAATTCGAA 59.122 50.000 0.00 0.00 0.00 3.71
3288 5178 0.250553 ACACCCGCTCCAAAATTCGA 60.251 50.000 0.00 0.00 0.00 3.71
3289 5179 0.168128 GACACCCGCTCCAAAATTCG 59.832 55.000 0.00 0.00 0.00 3.34
3290 5180 0.168128 CGACACCCGCTCCAAAATTC 59.832 55.000 0.00 0.00 0.00 2.17
3291 5181 0.536460 ACGACACCCGCTCCAAAATT 60.536 50.000 0.00 0.00 43.32 1.82
3292 5182 0.536460 AACGACACCCGCTCCAAAAT 60.536 50.000 0.00 0.00 43.32 1.82
3293 5183 0.748729 AAACGACACCCGCTCCAAAA 60.749 50.000 0.00 0.00 43.32 2.44
3294 5184 1.153127 AAACGACACCCGCTCCAAA 60.153 52.632 0.00 0.00 43.32 3.28
3295 5185 1.595929 GAAACGACACCCGCTCCAA 60.596 57.895 0.00 0.00 43.32 3.53
3296 5186 2.029964 GAAACGACACCCGCTCCA 59.970 61.111 0.00 0.00 43.32 3.86
3297 5187 2.741211 GGAAACGACACCCGCTCC 60.741 66.667 0.00 0.00 43.32 4.70
3298 5188 2.741211 GGGAAACGACACCCGCTC 60.741 66.667 0.00 0.00 43.32 5.03
3299 5189 4.324991 GGGGAAACGACACCCGCT 62.325 66.667 0.00 0.00 46.42 5.52
3302 5192 1.232621 CGAAAGGGGAAACGACACCC 61.233 60.000 0.00 0.00 45.06 4.61
3303 5193 0.533531 ACGAAAGGGGAAACGACACC 60.534 55.000 0.00 0.00 0.00 4.16
3304 5194 1.302366 AACGAAAGGGGAAACGACAC 58.698 50.000 0.00 0.00 0.00 3.67
3305 5195 1.671845 CAAACGAAAGGGGAAACGACA 59.328 47.619 0.00 0.00 0.00 4.35
3306 5196 1.002142 CCAAACGAAAGGGGAAACGAC 60.002 52.381 0.00 0.00 0.00 4.34
3307 5197 1.310904 CCAAACGAAAGGGGAAACGA 58.689 50.000 0.00 0.00 0.00 3.85
3308 5198 0.312729 CCCAAACGAAAGGGGAAACG 59.687 55.000 0.00 0.00 45.08 3.60
3314 5204 4.310128 ACAGAATGACCCAAACGAAAGGG 61.310 47.826 8.84 8.84 45.72 3.95
3315 5205 2.884639 ACAGAATGACCCAAACGAAAGG 59.115 45.455 0.00 0.00 39.69 3.11
3316 5206 4.568152 AACAGAATGACCCAAACGAAAG 57.432 40.909 0.00 0.00 39.69 2.62
3317 5207 4.440802 CCAAACAGAATGACCCAAACGAAA 60.441 41.667 0.00 0.00 39.69 3.46
3318 5208 3.067461 CCAAACAGAATGACCCAAACGAA 59.933 43.478 0.00 0.00 39.69 3.85
3319 5209 2.621055 CCAAACAGAATGACCCAAACGA 59.379 45.455 0.00 0.00 39.69 3.85
3320 5210 2.621055 TCCAAACAGAATGACCCAAACG 59.379 45.455 0.00 0.00 39.69 3.60
3321 5211 4.871933 ATCCAAACAGAATGACCCAAAC 57.128 40.909 0.00 0.00 39.69 2.93
3322 5212 5.480073 CCTTATCCAAACAGAATGACCCAAA 59.520 40.000 0.00 0.00 39.69 3.28
3323 5213 5.016173 CCTTATCCAAACAGAATGACCCAA 58.984 41.667 0.00 0.00 39.69 4.12
3324 5214 4.599041 CCTTATCCAAACAGAATGACCCA 58.401 43.478 0.00 0.00 39.69 4.51
3325 5215 3.381590 GCCTTATCCAAACAGAATGACCC 59.618 47.826 0.00 0.00 39.69 4.46
3326 5216 3.381590 GGCCTTATCCAAACAGAATGACC 59.618 47.826 0.00 0.00 39.69 4.02
3327 5217 3.065371 CGGCCTTATCCAAACAGAATGAC 59.935 47.826 0.00 0.00 39.69 3.06
3328 5218 3.054728 TCGGCCTTATCCAAACAGAATGA 60.055 43.478 0.00 0.00 39.69 2.57
3329 5219 3.278574 TCGGCCTTATCCAAACAGAATG 58.721 45.455 0.00 0.00 46.00 2.67
3330 5220 3.545703 CTCGGCCTTATCCAAACAGAAT 58.454 45.455 0.00 0.00 0.00 2.40
3331 5221 2.355716 CCTCGGCCTTATCCAAACAGAA 60.356 50.000 0.00 0.00 0.00 3.02
3332 5222 1.209504 CCTCGGCCTTATCCAAACAGA 59.790 52.381 0.00 0.00 0.00 3.41
3333 5223 1.668419 CCTCGGCCTTATCCAAACAG 58.332 55.000 0.00 0.00 0.00 3.16
3334 5224 0.254747 CCCTCGGCCTTATCCAAACA 59.745 55.000 0.00 0.00 0.00 2.83
3335 5225 0.544697 TCCCTCGGCCTTATCCAAAC 59.455 55.000 0.00 0.00 0.00 2.93
3336 5226 0.837272 CTCCCTCGGCCTTATCCAAA 59.163 55.000 0.00 0.00 0.00 3.28
3337 5227 0.031515 TCTCCCTCGGCCTTATCCAA 60.032 55.000 0.00 0.00 0.00 3.53
3338 5228 0.470080 CTCTCCCTCGGCCTTATCCA 60.470 60.000 0.00 0.00 0.00 3.41
3339 5229 0.178958 TCTCTCCCTCGGCCTTATCC 60.179 60.000 0.00 0.00 0.00 2.59
3340 5230 1.253100 CTCTCTCCCTCGGCCTTATC 58.747 60.000 0.00 0.00 0.00 1.75
3341 5231 0.830023 GCTCTCTCCCTCGGCCTTAT 60.830 60.000 0.00 0.00 0.00 1.73
3342 5232 1.455959 GCTCTCTCCCTCGGCCTTA 60.456 63.158 0.00 0.00 0.00 2.69
3343 5233 2.762043 GCTCTCTCCCTCGGCCTT 60.762 66.667 0.00 0.00 0.00 4.35
3344 5234 3.731766 GAGCTCTCTCCCTCGGCCT 62.732 68.421 6.43 0.00 33.19 5.19
3345 5235 3.223589 GAGCTCTCTCCCTCGGCC 61.224 72.222 6.43 0.00 33.19 6.13
3346 5236 3.591835 CGAGCTCTCTCCCTCGGC 61.592 72.222 12.85 0.00 45.20 5.54
3349 5239 2.542907 CGCTCGAGCTCTCTCCCTC 61.543 68.421 32.88 2.59 39.32 4.30
3350 5240 2.515991 CGCTCGAGCTCTCTCCCT 60.516 66.667 32.88 0.00 39.32 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.