Multiple sequence alignment - TraesCS5D01G369400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G369400 chr5D 100.000 2345 0 0 1 2345 444851365 444853709 0.000000e+00 4331.0
1 TraesCS5D01G369400 chr5D 88.845 251 26 2 2096 2345 467619216 467618967 8.140000e-80 307.0
2 TraesCS5D01G369400 chr5D 75.492 559 71 43 1192 1718 444745009 444745533 1.830000e-51 213.0
3 TraesCS5D01G369400 chr5D 94.828 58 3 0 985 1042 444743807 444743864 8.920000e-15 91.6
4 TraesCS5D01G369400 chr5B 89.429 1050 37 33 651 1677 541736449 541737447 0.000000e+00 1256.0
5 TraesCS5D01G369400 chr5B 75.410 549 73 35 1197 1718 541684369 541684882 2.360000e-50 209.0
6 TraesCS5D01G369400 chr5B 94.030 134 7 1 985 1118 541683169 541683301 3.950000e-48 202.0
7 TraesCS5D01G369400 chr5B 98.387 62 1 0 2039 2100 541737472 541737533 2.460000e-20 110.0
8 TraesCS5D01G369400 chr5B 98.276 58 1 0 595 652 541735956 541736013 4.120000e-18 102.0
9 TraesCS5D01G369400 chr5A 88.753 978 48 26 464 1399 561692577 561693534 0.000000e+00 1140.0
10 TraesCS5D01G369400 chr5A 80.426 470 59 12 13 450 1296457 1296925 6.250000e-86 327.0
11 TraesCS5D01G369400 chr5A 96.429 112 4 0 987 1098 561688894 561689005 3.980000e-43 185.0
12 TraesCS5D01G369400 chr5A 88.966 145 4 5 1484 1624 561693582 561693718 4.010000e-38 169.0
13 TraesCS5D01G369400 chr5A 91.579 95 2 1 2012 2100 561694247 561694341 2.450000e-25 126.0
14 TraesCS5D01G369400 chr5A 81.132 159 12 5 1785 1925 561694055 561694213 6.850000e-21 111.0
15 TraesCS5D01G369400 chr5A 85.000 100 7 4 1644 1743 561693706 561693797 6.900000e-16 95.3
16 TraesCS5D01G369400 chr7D 83.369 463 45 9 14 445 503688031 503687570 1.310000e-107 399.0
17 TraesCS5D01G369400 chr7D 80.983 468 57 12 13 449 117530967 117531433 2.230000e-90 342.0
18 TraesCS5D01G369400 chr7D 88.627 255 27 1 2093 2345 618373336 618373590 2.260000e-80 309.0
19 TraesCS5D01G369400 chr1A 81.156 467 55 11 13 448 514052771 514052307 6.200000e-91 344.0
20 TraesCS5D01G369400 chr3A 81.075 465 56 12 14 447 357085972 357086435 2.230000e-90 342.0
21 TraesCS5D01G369400 chr2D 90.873 252 21 1 2096 2345 154189193 154189444 1.040000e-88 337.0
22 TraesCS5D01G369400 chr2D 89.764 254 23 2 2094 2345 37371857 37371605 2.910000e-84 322.0
23 TraesCS5D01G369400 chr2D 89.412 255 21 5 2094 2345 384751190 384750939 1.350000e-82 316.0
24 TraesCS5D01G369400 chr2D 97.222 36 1 0 1037 1072 397962785 397962750 7.000000e-06 62.1
25 TraesCS5D01G369400 chr6B 80.514 467 59 7 14 449 713191668 713191203 1.740000e-86 329.0
26 TraesCS5D01G369400 chr3D 89.535 258 22 2 2092 2345 465506359 465506615 2.910000e-84 322.0
27 TraesCS5D01G369400 chr3D 88.933 253 25 2 2096 2345 51779672 51779420 2.260000e-80 309.0
28 TraesCS5D01G369400 chr4A 80.674 445 54 13 35 448 534155221 534155664 1.350000e-82 316.0
29 TraesCS5D01G369400 chr4D 89.837 246 19 4 2096 2336 508493261 508493505 6.290000e-81 311.0
30 TraesCS5D01G369400 chr4D 88.583 254 25 1 2096 2345 498565669 498565922 2.930000e-79 305.0
31 TraesCS5D01G369400 chr4D 79.752 242 26 8 230 450 297208932 297208693 1.120000e-33 154.0
32 TraesCS5D01G369400 chr4B 78.511 470 62 17 14 445 75744821 75744353 2.970000e-69 272.0
33 TraesCS5D01G369400 chr3B 81.818 330 47 11 15 335 315715761 315715436 4.970000e-67 265.0
34 TraesCS5D01G369400 chr3B 97.222 36 1 0 1037 1072 245922850 245922815 7.000000e-06 62.1
35 TraesCS5D01G369400 chr3B 94.737 38 0 2 463 498 77855526 77855563 9.050000e-05 58.4
36 TraesCS5D01G369400 chr6A 83.394 277 40 2 14 284 124912122 124911846 3.870000e-63 252.0
37 TraesCS5D01G369400 chr1D 90.476 84 8 0 1210 1293 42845526 42845443 6.850000e-21 111.0
38 TraesCS5D01G369400 chr1B 89.655 87 9 0 1207 1293 62681857 62681943 6.850000e-21 111.0
39 TraesCS5D01G369400 chr2B 94.000 50 2 1 330 378 691186249 691186298 8.990000e-10 75.0
40 TraesCS5D01G369400 chr7B 92.857 42 3 0 1028 1069 29687850 29687891 7.000000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G369400 chr5D 444851365 444853709 2344 False 4331.000000 4331 100.000000 1 2345 1 chr5D.!!$F1 2344
1 TraesCS5D01G369400 chr5B 541735956 541737533 1577 False 489.333333 1256 95.364000 595 2100 3 chr5B.!!$F2 1505
2 TraesCS5D01G369400 chr5B 541683169 541684882 1713 False 205.500000 209 84.720000 985 1718 2 chr5B.!!$F1 733
3 TraesCS5D01G369400 chr5A 561688894 561694341 5447 False 304.383333 1140 88.643167 464 2100 6 chr5A.!!$F2 1636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.036388 CACCGTCAGCCATGTAGGTT 60.036 55.0 0.0 0.0 40.61 3.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 6498 0.713579 AGGGAACAGAGGGAGTAGCT 59.286 55.0 0.0 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.704833 GCAGCTGCCTGGAACCGA 62.705 66.667 28.76 0.00 39.54 4.69
43 44 2.032681 AGCTGCCTGGAACCGAAC 59.967 61.111 0.00 0.00 0.00 3.95
44 45 3.423154 GCTGCCTGGAACCGAACG 61.423 66.667 0.00 0.00 0.00 3.95
45 46 2.342279 CTGCCTGGAACCGAACGA 59.658 61.111 0.00 0.00 0.00 3.85
46 47 1.301401 CTGCCTGGAACCGAACGAA 60.301 57.895 0.00 0.00 0.00 3.85
47 48 0.882927 CTGCCTGGAACCGAACGAAA 60.883 55.000 0.00 0.00 0.00 3.46
48 49 1.161563 TGCCTGGAACCGAACGAAAC 61.162 55.000 0.00 0.00 0.00 2.78
49 50 1.848932 GCCTGGAACCGAACGAAACC 61.849 60.000 0.00 0.00 0.00 3.27
50 51 0.250166 CCTGGAACCGAACGAAACCT 60.250 55.000 0.00 0.00 0.00 3.50
51 52 1.145803 CTGGAACCGAACGAAACCTC 58.854 55.000 0.00 0.00 0.00 3.85
60 61 3.799753 CGAAACCTCGCCATGGAG 58.200 61.111 18.40 13.80 38.45 3.86
61 62 1.218047 CGAAACCTCGCCATGGAGA 59.782 57.895 18.40 18.11 38.45 3.71
62 63 0.179073 CGAAACCTCGCCATGGAGAT 60.179 55.000 19.23 3.60 38.45 2.75
63 64 1.303309 GAAACCTCGCCATGGAGATG 58.697 55.000 19.23 18.05 36.08 2.90
64 65 0.911769 AAACCTCGCCATGGAGATGA 59.088 50.000 23.77 11.06 36.08 2.92
65 66 0.467384 AACCTCGCCATGGAGATGAG 59.533 55.000 23.77 18.35 36.08 2.90
66 67 1.370437 CCTCGCCATGGAGATGAGG 59.630 63.158 19.23 20.38 40.19 3.86
72 73 3.564218 ATGGAGATGAGGGCCGCC 61.564 66.667 4.35 0.00 0.00 6.13
75 76 4.593864 GAGATGAGGGCCGCCGTC 62.594 72.222 22.68 22.68 38.71 4.79
88 89 2.278596 CCGTCGACATGCCGGTAG 60.279 66.667 17.16 0.00 37.00 3.18
89 90 2.278596 CGTCGACATGCCGGTAGG 60.279 66.667 17.16 1.56 41.62 3.18
90 91 2.106332 GTCGACATGCCGGTAGGG 59.894 66.667 11.55 0.33 38.20 3.53
91 92 2.043752 TCGACATGCCGGTAGGGA 60.044 61.111 9.50 0.00 43.89 4.20
93 94 2.109181 GACATGCCGGTAGGGAGC 59.891 66.667 9.50 0.00 42.67 4.70
96 97 2.844839 ATGCCGGTAGGGAGCCTC 60.845 66.667 1.90 0.00 42.67 4.70
97 98 3.396822 ATGCCGGTAGGGAGCCTCT 62.397 63.158 1.90 0.00 42.67 3.69
98 99 2.020100 ATGCCGGTAGGGAGCCTCTA 62.020 60.000 1.90 0.00 42.67 2.43
101 102 1.904378 CGGTAGGGAGCCTCTAGCC 60.904 68.421 5.92 0.00 45.47 3.93
104 105 3.811807 TAGGGAGCCTCTAGCCGCC 62.812 68.421 0.00 0.00 45.47 6.13
110 111 3.541713 CCTCTAGCCGCCCCTCAC 61.542 72.222 0.00 0.00 0.00 3.51
111 112 2.443016 CTCTAGCCGCCCCTCACT 60.443 66.667 0.00 0.00 0.00 3.41
112 113 2.759973 TCTAGCCGCCCCTCACTG 60.760 66.667 0.00 0.00 0.00 3.66
113 114 3.854669 CTAGCCGCCCCTCACTGG 61.855 72.222 0.00 0.00 0.00 4.00
114 115 4.715130 TAGCCGCCCCTCACTGGT 62.715 66.667 0.00 0.00 0.00 4.00
118 119 4.087892 CGCCCCTCACTGGTCCTG 62.088 72.222 0.00 0.00 0.00 3.86
120 121 2.608988 CCCCTCACTGGTCCTGCT 60.609 66.667 0.00 0.00 0.00 4.24
121 122 2.664081 CCCCTCACTGGTCCTGCTC 61.664 68.421 0.00 0.00 0.00 4.26
122 123 2.575993 CCTCACTGGTCCTGCTCG 59.424 66.667 0.00 0.00 0.00 5.03
123 124 2.125753 CTCACTGGTCCTGCTCGC 60.126 66.667 0.00 0.00 0.00 5.03
124 125 3.978723 CTCACTGGTCCTGCTCGCG 62.979 68.421 0.00 0.00 0.00 5.87
155 156 0.319900 CCAAGGCCATATCGAGACGG 60.320 60.000 5.01 0.00 0.00 4.79
156 157 0.673985 CAAGGCCATATCGAGACGGA 59.326 55.000 5.01 0.00 0.00 4.69
157 158 1.273606 CAAGGCCATATCGAGACGGAT 59.726 52.381 5.01 0.00 0.00 4.18
158 159 1.178276 AGGCCATATCGAGACGGATC 58.822 55.000 5.01 0.00 0.00 3.36
159 160 1.178276 GGCCATATCGAGACGGATCT 58.822 55.000 0.00 0.00 38.15 2.75
160 161 1.135257 GGCCATATCGAGACGGATCTG 60.135 57.143 0.00 0.00 34.34 2.90
161 162 1.135257 GCCATATCGAGACGGATCTGG 60.135 57.143 6.47 0.00 41.29 3.86
162 163 2.437413 CCATATCGAGACGGATCTGGA 58.563 52.381 6.47 0.00 41.02 3.86
163 164 2.162608 CCATATCGAGACGGATCTGGAC 59.837 54.545 6.47 0.00 41.86 4.02
164 165 2.632987 TATCGAGACGGATCTGGACA 57.367 50.000 6.47 0.00 41.86 4.02
165 166 1.313772 ATCGAGACGGATCTGGACAG 58.686 55.000 6.47 0.00 41.86 3.51
166 167 0.748367 TCGAGACGGATCTGGACAGG 60.748 60.000 6.47 0.00 35.01 4.00
167 168 0.748367 CGAGACGGATCTGGACAGGA 60.748 60.000 6.47 0.00 34.34 3.86
168 169 0.741915 GAGACGGATCTGGACAGGAC 59.258 60.000 6.47 0.00 34.34 3.85
169 170 0.039764 AGACGGATCTGGACAGGACA 59.960 55.000 6.47 0.00 32.29 4.02
171 172 1.258445 ACGGATCTGGACAGGACACC 61.258 60.000 6.47 0.00 0.00 4.16
172 173 1.257750 CGGATCTGGACAGGACACCA 61.258 60.000 0.00 0.00 34.81 4.17
177 178 2.683916 TGGACAGGACACCAGATCC 58.316 57.895 0.00 0.00 36.38 3.36
179 180 1.153549 GACAGGACACCAGATCCGC 60.154 63.158 0.00 0.00 41.52 5.54
181 182 1.153489 CAGGACACCAGATCCGCAG 60.153 63.158 0.00 0.00 41.52 5.18
183 184 2.512515 GACACCAGATCCGCAGCC 60.513 66.667 0.00 0.00 0.00 4.85
184 185 3.315142 GACACCAGATCCGCAGCCA 62.315 63.158 0.00 0.00 0.00 4.75
185 186 2.513204 CACCAGATCCGCAGCCAG 60.513 66.667 0.00 0.00 0.00 4.85
186 187 3.005539 ACCAGATCCGCAGCCAGT 61.006 61.111 0.00 0.00 0.00 4.00
187 188 2.513204 CCAGATCCGCAGCCAGTG 60.513 66.667 0.00 0.00 0.00 3.66
225 226 0.740868 CCACACCGTCAGCCATGTAG 60.741 60.000 0.00 0.00 0.00 2.74
226 227 0.740868 CACACCGTCAGCCATGTAGG 60.741 60.000 0.00 0.00 41.84 3.18
227 228 1.192146 ACACCGTCAGCCATGTAGGT 61.192 55.000 0.00 0.00 40.61 3.08
228 229 0.036388 CACCGTCAGCCATGTAGGTT 60.036 55.000 0.00 0.00 40.61 3.50
229 230 0.249398 ACCGTCAGCCATGTAGGTTC 59.751 55.000 0.00 0.00 40.61 3.62
232 233 0.618458 GTCAGCCATGTAGGTTCCCA 59.382 55.000 0.00 0.00 40.61 4.37
233 234 1.212935 GTCAGCCATGTAGGTTCCCAT 59.787 52.381 0.00 0.00 40.61 4.00
234 235 1.490490 TCAGCCATGTAGGTTCCCATC 59.510 52.381 0.00 0.00 40.61 3.51
235 236 0.469917 AGCCATGTAGGTTCCCATCG 59.530 55.000 0.00 0.00 40.61 3.84
237 238 0.535102 CCATGTAGGTTCCCATCGGC 60.535 60.000 0.00 0.00 0.00 5.54
238 239 0.880278 CATGTAGGTTCCCATCGGCG 60.880 60.000 0.00 0.00 0.00 6.46
240 241 3.857038 TAGGTTCCCATCGGCGCC 61.857 66.667 19.07 19.07 0.00 6.53
276 277 3.579302 CCTGACTGCCACCCCCAA 61.579 66.667 0.00 0.00 0.00 4.12
277 278 2.282462 CTGACTGCCACCCCCAAC 60.282 66.667 0.00 0.00 0.00 3.77
278 279 3.868200 CTGACTGCCACCCCCAACC 62.868 68.421 0.00 0.00 0.00 3.77
279 280 3.580319 GACTGCCACCCCCAACCT 61.580 66.667 0.00 0.00 0.00 3.50
280 281 3.569200 GACTGCCACCCCCAACCTC 62.569 68.421 0.00 0.00 0.00 3.85
281 282 4.366684 CTGCCACCCCCAACCTCC 62.367 72.222 0.00 0.00 0.00 4.30
285 286 3.979497 CACCCCCAACCTCCCCAC 61.979 72.222 0.00 0.00 0.00 4.61
290 291 4.760047 CCAACCTCCCCACGCGAG 62.760 72.222 15.93 4.16 0.00 5.03
291 292 3.691342 CAACCTCCCCACGCGAGA 61.691 66.667 15.93 2.61 0.00 4.04
292 293 3.692406 AACCTCCCCACGCGAGAC 61.692 66.667 15.93 0.00 0.00 3.36
311 312 4.463879 CTGCCTCCGCCTCACAGG 62.464 72.222 0.00 0.00 38.80 4.00
313 314 3.474570 GCCTCCGCCTCACAGGAT 61.475 66.667 0.00 0.00 37.67 3.24
316 317 1.440893 CTCCGCCTCACAGGATCTG 59.559 63.158 0.00 0.00 37.67 2.90
317 318 2.202987 CCGCCTCACAGGATCTGC 60.203 66.667 0.00 0.00 37.67 4.26
319 320 2.202987 GCCTCACAGGATCTGCCG 60.203 66.667 0.00 0.00 43.43 5.69
320 321 2.202987 CCTCACAGGATCTGCCGC 60.203 66.667 0.00 0.00 43.43 6.53
322 323 3.068064 TCACAGGATCTGCCGCGA 61.068 61.111 8.23 0.00 43.43 5.87
381 382 4.106925 GCAGCTGGGGTGGAGGAG 62.107 72.222 17.12 0.00 0.00 3.69
382 383 4.106925 CAGCTGGGGTGGAGGAGC 62.107 72.222 5.57 0.00 0.00 4.70
463 464 2.983791 GGGGGTGATTCGAACCGA 59.016 61.111 0.00 0.00 38.70 4.69
464 465 1.525442 GGGGGTGATTCGAACCGAT 59.475 57.895 0.00 0.00 38.70 4.18
465 466 0.814010 GGGGGTGATTCGAACCGATG 60.814 60.000 0.00 0.00 38.70 3.84
466 467 0.177141 GGGGTGATTCGAACCGATGA 59.823 55.000 0.00 0.00 38.70 2.92
467 468 1.571919 GGGTGATTCGAACCGATGAG 58.428 55.000 0.00 0.00 38.70 2.90
479 3700 1.690283 CCGATGAGCGCTTGTGTCTG 61.690 60.000 13.26 0.34 39.11 3.51
493 3714 6.292649 CGCTTGTGTCTGTACTGATGTTAAAA 60.293 38.462 5.69 0.00 0.00 1.52
494 3715 7.414436 GCTTGTGTCTGTACTGATGTTAAAAA 58.586 34.615 5.69 0.00 0.00 1.94
531 3752 1.817447 GTGACTACGGCTGACTAGGTT 59.183 52.381 0.00 0.00 0.00 3.50
533 3754 2.089980 GACTACGGCTGACTAGGTTCA 58.910 52.381 0.00 0.00 0.00 3.18
573 3794 2.470140 CGTGACACGAGAAAATGTACGC 60.470 50.000 23.39 0.00 46.05 4.42
575 3796 3.183775 GTGACACGAGAAAATGTACGCTT 59.816 43.478 0.00 0.00 0.00 4.68
576 3797 3.427528 TGACACGAGAAAATGTACGCTTC 59.572 43.478 0.00 0.00 0.00 3.86
578 3799 3.428870 ACACGAGAAAATGTACGCTTCTG 59.571 43.478 8.23 4.84 29.59 3.02
579 3800 2.993899 ACGAGAAAATGTACGCTTCTGG 59.006 45.455 8.23 9.24 32.87 3.86
593 3816 1.452145 TTCTGGGCAAAAGCCGTGTC 61.452 55.000 0.00 0.00 0.00 3.67
671 4336 4.439305 TCGGAATTCAAGCTGGAATTTG 57.561 40.909 26.31 21.38 45.05 2.32
794 4463 2.890474 GCTCCGTACATGGTGGCG 60.890 66.667 0.00 0.00 0.00 5.69
937 4619 2.570284 GCCCCAAACCAAACCTCCG 61.570 63.158 0.00 0.00 0.00 4.63
945 4630 2.742372 CAAACCTCCGGACGCAGG 60.742 66.667 0.00 2.14 35.69 4.85
961 4646 0.325110 CAGGGCAAGAGAGAGGGAGA 60.325 60.000 0.00 0.00 0.00 3.71
996 4681 4.909695 AGAGAGAGAGAGAGATCTCCATCA 59.090 45.833 19.30 0.00 45.77 3.07
1122 4819 1.761667 CCCCTCCTCTCCTCTGCTG 60.762 68.421 0.00 0.00 0.00 4.41
1209 5920 4.384056 TCTTTCTTTCTGTCTGCCTTGAG 58.616 43.478 0.00 0.00 0.00 3.02
1347 6059 0.739813 ACGACGCCCTTGCTTGATAC 60.740 55.000 0.00 0.00 34.43 2.24
1375 6087 1.369091 AACTCATGCCGTGCGAATCC 61.369 55.000 0.00 0.00 0.00 3.01
1393 6105 2.074942 CACGTCGTGTGTGTGTGTT 58.925 52.632 17.30 0.00 43.88 3.32
1414 6148 0.242017 GTGTTTCCATCTGCTGCACC 59.758 55.000 0.00 0.00 0.00 5.01
1434 6168 1.148273 TGTGGCGTGCCTTCTTTCT 59.852 52.632 12.84 0.00 36.94 2.52
1435 6169 0.394938 TGTGGCGTGCCTTCTTTCTA 59.605 50.000 12.84 0.00 36.94 2.10
1436 6170 1.079503 GTGGCGTGCCTTCTTTCTAG 58.920 55.000 12.84 0.00 36.94 2.43
1500 6235 1.901085 GGCCGTCCTGTGATTCTCT 59.099 57.895 0.00 0.00 0.00 3.10
1501 6236 0.179097 GGCCGTCCTGTGATTCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
1502 6237 0.532573 GCCGTCCTGTGATTCTCTCA 59.467 55.000 0.00 0.00 0.00 3.27
1503 6238 1.137872 GCCGTCCTGTGATTCTCTCAT 59.862 52.381 0.00 0.00 35.97 2.90
1504 6239 2.362397 GCCGTCCTGTGATTCTCTCATA 59.638 50.000 0.00 0.00 35.97 2.15
1505 6240 3.797184 GCCGTCCTGTGATTCTCTCATAC 60.797 52.174 0.00 0.00 35.97 2.39
1553 6291 4.600692 AGATTTTTGCCACTGGTTTACC 57.399 40.909 0.00 0.00 0.00 2.85
1606 6347 0.473117 TACGATCCCAGGATTCCCCC 60.473 60.000 0.00 0.00 34.60 5.40
1657 6400 3.181520 CCGATCGGACTTGATTTTGTGTC 60.182 47.826 30.62 0.00 37.50 3.67
1706 6456 4.537015 CCCTCGTCAAATGTGTTTCTTTC 58.463 43.478 0.00 0.00 0.00 2.62
1724 6476 4.398044 TCTTTCTTTTCTTTTGACGGTGCT 59.602 37.500 0.00 0.00 0.00 4.40
1730 6482 1.463056 TCTTTTGACGGTGCTAATGCG 59.537 47.619 0.00 0.00 43.34 4.73
1739 6491 1.602191 GTGCTAATGCGTTGTTTCCG 58.398 50.000 0.08 0.00 43.34 4.30
1742 6494 2.290916 TGCTAATGCGTTGTTTCCGAAA 59.709 40.909 0.08 0.00 43.34 3.46
1743 6495 3.243101 TGCTAATGCGTTGTTTCCGAAAA 60.243 39.130 0.08 0.00 43.34 2.29
1744 6496 3.731717 GCTAATGCGTTGTTTCCGAAAAA 59.268 39.130 0.08 0.00 0.00 1.94
1764 6516 1.574263 AAGCTACTCCCTCTGTTCCC 58.426 55.000 0.00 0.00 0.00 3.97
1776 6528 4.345547 CCCTCTGTTCCCTTTACTCCTATC 59.654 50.000 0.00 0.00 0.00 2.08
1778 6530 3.958798 TCTGTTCCCTTTACTCCTATCCG 59.041 47.826 0.00 0.00 0.00 4.18
1779 6531 3.958798 CTGTTCCCTTTACTCCTATCCGA 59.041 47.826 0.00 0.00 0.00 4.55
1780 6532 3.703052 TGTTCCCTTTACTCCTATCCGAC 59.297 47.826 0.00 0.00 0.00 4.79
1781 6533 3.675348 TCCCTTTACTCCTATCCGACA 57.325 47.619 0.00 0.00 0.00 4.35
1783 6535 3.028850 CCCTTTACTCCTATCCGACACA 58.971 50.000 0.00 0.00 0.00 3.72
1799 6785 4.143389 CCGACACAAGACGTTTAGACAATC 60.143 45.833 0.00 0.00 0.00 2.67
1801 6787 4.699637 ACACAAGACGTTTAGACAATCCA 58.300 39.130 0.00 0.00 0.00 3.41
1809 6795 4.213482 ACGTTTAGACAATCCAGACAAAGC 59.787 41.667 0.00 0.00 0.00 3.51
1855 6853 3.324207 AAAAAGGAGGGAGTGCGTC 57.676 52.632 0.00 0.00 0.00 5.19
1857 6855 0.035458 AAAAGGAGGGAGTGCGTCAG 59.965 55.000 6.67 0.00 0.00 3.51
1858 6856 0.832135 AAAGGAGGGAGTGCGTCAGA 60.832 55.000 6.67 0.00 0.00 3.27
1859 6857 0.832135 AAGGAGGGAGTGCGTCAGAA 60.832 55.000 6.67 0.00 0.00 3.02
1862 6866 0.318762 GAGGGAGTGCGTCAGAAGTT 59.681 55.000 0.00 0.00 0.00 2.66
1875 6879 2.399916 AGAAGTTCTGATGCAGAGGC 57.600 50.000 4.10 0.00 41.75 4.70
1912 6916 8.947115 CAAACTGTCTTTTTAAGTAGGATAGGG 58.053 37.037 0.00 0.00 0.00 3.53
1921 6925 7.433537 TTTAAGTAGGATAGGGGAGAAGTTG 57.566 40.000 0.00 0.00 0.00 3.16
1925 6929 4.628661 AGGATAGGGGAGAAGTTGTAGT 57.371 45.455 0.00 0.00 0.00 2.73
1926 6930 4.548669 AGGATAGGGGAGAAGTTGTAGTC 58.451 47.826 0.00 0.00 0.00 2.59
1928 6932 4.548669 GATAGGGGAGAAGTTGTAGTCCT 58.451 47.826 0.00 0.00 0.00 3.85
1929 6933 3.277416 AGGGGAGAAGTTGTAGTCCTT 57.723 47.619 0.00 0.00 0.00 3.36
1931 6935 3.981375 AGGGGAGAAGTTGTAGTCCTTTT 59.019 43.478 0.00 0.00 0.00 2.27
1932 6936 4.415846 AGGGGAGAAGTTGTAGTCCTTTTT 59.584 41.667 0.00 0.00 0.00 1.94
1952 6956 4.822685 TTTATCTTTGGTACGGTAGGCA 57.177 40.909 0.00 0.00 0.00 4.75
1953 6957 2.981859 ATCTTTGGTACGGTAGGCAG 57.018 50.000 0.00 0.00 0.00 4.85
1954 6958 1.927487 TCTTTGGTACGGTAGGCAGA 58.073 50.000 0.00 0.00 0.00 4.26
1955 6959 1.822990 TCTTTGGTACGGTAGGCAGAG 59.177 52.381 0.00 0.00 0.00 3.35
1956 6960 1.549170 CTTTGGTACGGTAGGCAGAGT 59.451 52.381 0.00 0.00 0.00 3.24
1957 6961 1.636148 TTGGTACGGTAGGCAGAGTT 58.364 50.000 0.00 0.00 0.00 3.01
1958 6962 1.636148 TGGTACGGTAGGCAGAGTTT 58.364 50.000 0.00 0.00 0.00 2.66
1959 6963 1.972795 TGGTACGGTAGGCAGAGTTTT 59.027 47.619 0.00 0.00 0.00 2.43
1960 6964 2.028748 TGGTACGGTAGGCAGAGTTTTC 60.029 50.000 0.00 0.00 0.00 2.29
1961 6965 2.233186 GGTACGGTAGGCAGAGTTTTCT 59.767 50.000 0.00 0.00 0.00 2.52
1962 6966 2.745515 ACGGTAGGCAGAGTTTTCTC 57.254 50.000 0.00 0.00 46.50 2.87
1975 6979 5.294050 GAGTTTTCTCAGAAGAAGCATGG 57.706 43.478 0.00 0.00 45.53 3.66
1976 6980 4.723309 AGTTTTCTCAGAAGAAGCATGGT 58.277 39.130 0.00 0.00 42.36 3.55
1977 6981 4.759183 AGTTTTCTCAGAAGAAGCATGGTC 59.241 41.667 0.00 0.00 42.36 4.02
1978 6982 4.356405 TTTCTCAGAAGAAGCATGGTCA 57.644 40.909 0.00 0.00 42.36 4.02
1979 6983 4.356405 TTCTCAGAAGAAGCATGGTCAA 57.644 40.909 0.00 0.00 36.59 3.18
1980 6984 4.356405 TCTCAGAAGAAGCATGGTCAAA 57.644 40.909 0.00 0.00 0.00 2.69
1981 6985 4.067896 TCTCAGAAGAAGCATGGTCAAAC 58.932 43.478 0.00 0.00 0.00 2.93
1982 6986 4.070716 CTCAGAAGAAGCATGGTCAAACT 58.929 43.478 0.00 0.00 0.00 2.66
1983 6987 5.012046 TCTCAGAAGAAGCATGGTCAAACTA 59.988 40.000 0.00 0.00 0.00 2.24
1984 6988 5.620206 TCAGAAGAAGCATGGTCAAACTAA 58.380 37.500 0.00 0.00 0.00 2.24
1985 6989 5.470098 TCAGAAGAAGCATGGTCAAACTAAC 59.530 40.000 0.00 0.00 0.00 2.34
1986 6990 4.762251 AGAAGAAGCATGGTCAAACTAACC 59.238 41.667 0.00 0.00 37.31 2.85
2004 7008 3.328382 ACCAAGTGAGTAATAAGCGCA 57.672 42.857 11.47 0.00 0.00 6.09
2005 7009 3.000727 ACCAAGTGAGTAATAAGCGCAC 58.999 45.455 11.47 0.00 37.01 5.34
2006 7010 2.351726 CCAAGTGAGTAATAAGCGCACC 59.648 50.000 11.47 0.00 37.36 5.01
2007 7011 3.000041 CAAGTGAGTAATAAGCGCACCA 59.000 45.455 11.47 0.00 37.36 4.17
2008 7012 3.328382 AGTGAGTAATAAGCGCACCAA 57.672 42.857 11.47 0.00 37.36 3.67
2009 7013 3.670625 AGTGAGTAATAAGCGCACCAAA 58.329 40.909 11.47 0.00 37.36 3.28
2010 7014 3.684788 AGTGAGTAATAAGCGCACCAAAG 59.315 43.478 11.47 0.00 37.36 2.77
2096 7113 1.375140 ATGCTGTGGACGTGCTGAG 60.375 57.895 8.99 5.09 0.00 3.35
2110 7127 1.093159 GCTGAGAGCAACTCCAATGG 58.907 55.000 0.00 0.00 44.34 3.16
2111 7128 1.747709 CTGAGAGCAACTCCAATGGG 58.252 55.000 0.00 0.00 44.34 4.00
2112 7129 0.329261 TGAGAGCAACTCCAATGGGG 59.671 55.000 0.00 0.00 44.34 4.96
2113 7130 1.000396 AGAGCAACTCCAATGGGGC 60.000 57.895 0.00 0.00 36.21 5.80
2114 7131 2.361610 AGCAACTCCAATGGGGCG 60.362 61.111 0.00 0.00 36.21 6.13
2115 7132 2.361104 GCAACTCCAATGGGGCGA 60.361 61.111 0.00 0.00 36.21 5.54
2116 7133 1.754234 GCAACTCCAATGGGGCGAT 60.754 57.895 0.00 0.00 36.21 4.58
2117 7134 1.728490 GCAACTCCAATGGGGCGATC 61.728 60.000 0.00 0.00 36.21 3.69
2118 7135 1.103398 CAACTCCAATGGGGCGATCC 61.103 60.000 0.00 0.00 36.21 3.36
2119 7136 1.570857 AACTCCAATGGGGCGATCCA 61.571 55.000 0.00 0.00 41.60 3.41
2124 7141 4.481195 ATGGGGCGATCCATTTCG 57.519 55.556 4.40 0.00 44.55 3.46
2125 7142 1.531748 ATGGGGCGATCCATTTCGT 59.468 52.632 4.40 0.00 44.55 3.85
2126 7143 0.535102 ATGGGGCGATCCATTTCGTC 60.535 55.000 4.40 0.00 44.55 4.20
2128 7145 3.319904 GGCGATCCATTTCGTCCG 58.680 61.111 0.00 0.00 41.16 4.79
2129 7146 2.626455 GCGATCCATTTCGTCCGC 59.374 61.111 0.00 0.00 41.16 5.54
2130 7147 2.920869 CGATCCATTTCGTCCGCG 59.079 61.111 0.00 0.00 39.92 6.46
2131 7148 2.585869 CGATCCATTTCGTCCGCGG 61.586 63.158 22.12 22.12 38.89 6.46
2132 7149 2.882366 GATCCATTTCGTCCGCGGC 61.882 63.158 23.51 15.21 38.89 6.53
2133 7150 3.385749 ATCCATTTCGTCCGCGGCT 62.386 57.895 23.51 0.00 38.89 5.52
2134 7151 3.864686 CCATTTCGTCCGCGGCTG 61.865 66.667 23.51 15.70 38.89 4.85
2135 7152 3.118454 CATTTCGTCCGCGGCTGT 61.118 61.111 23.51 0.00 38.89 4.40
2136 7153 2.813908 ATTTCGTCCGCGGCTGTC 60.814 61.111 23.51 9.77 38.89 3.51
2147 7164 3.047877 GGCTGTCCGTTTGGGTCG 61.048 66.667 0.00 0.00 37.00 4.79
2149 7166 3.047877 CTGTCCGTTTGGGTCGGC 61.048 66.667 0.00 0.00 46.49 5.54
2150 7167 4.973055 TGTCCGTTTGGGTCGGCG 62.973 66.667 0.00 0.00 46.49 6.46
2161 7178 3.641986 GTCGGCGCGGACACAAAA 61.642 61.111 34.74 4.76 36.91 2.44
2162 7179 2.895865 TCGGCGCGGACACAAAAA 60.896 55.556 14.27 0.00 0.00 1.94
2163 7180 2.426752 CGGCGCGGACACAAAAAG 60.427 61.111 9.72 0.00 0.00 2.27
2164 7181 2.719354 GGCGCGGACACAAAAAGT 59.281 55.556 8.83 0.00 0.00 2.66
2173 7190 3.168628 CACAAAAAGTGCCTCAGCG 57.831 52.632 0.00 0.00 44.31 5.18
2182 7199 4.543084 GCCTCAGCGCGCCAATTC 62.543 66.667 30.33 11.18 0.00 2.17
2183 7200 3.126879 CCTCAGCGCGCCAATTCA 61.127 61.111 30.33 4.14 0.00 2.57
2184 7201 2.689785 CCTCAGCGCGCCAATTCAA 61.690 57.895 30.33 4.41 0.00 2.69
2185 7202 1.209898 CTCAGCGCGCCAATTCAAA 59.790 52.632 30.33 3.25 0.00 2.69
2186 7203 1.067199 CTCAGCGCGCCAATTCAAAC 61.067 55.000 30.33 0.00 0.00 2.93
2187 7204 2.126888 AGCGCGCCAATTCAAACG 60.127 55.556 30.33 0.00 0.00 3.60
2188 7205 3.171911 GCGCGCCAATTCAAACGG 61.172 61.111 23.24 0.00 0.00 4.44
2189 7206 2.558821 CGCGCCAATTCAAACGGA 59.441 55.556 0.00 0.00 0.00 4.69
2190 7207 1.795962 CGCGCCAATTCAAACGGAC 60.796 57.895 0.00 0.00 0.00 4.79
2191 7208 1.795962 GCGCCAATTCAAACGGACG 60.796 57.895 0.00 0.00 0.00 4.79
2192 7209 1.795962 CGCCAATTCAAACGGACGC 60.796 57.895 0.00 0.00 0.00 5.19
2193 7210 1.795962 GCCAATTCAAACGGACGCG 60.796 57.895 3.53 3.53 0.00 6.01
2194 7211 1.795962 CCAATTCAAACGGACGCGC 60.796 57.895 5.73 0.00 0.00 6.86
2195 7212 2.137395 CAATTCAAACGGACGCGCG 61.137 57.895 30.96 30.96 0.00 6.86
2196 7213 2.600475 AATTCAAACGGACGCGCGT 61.600 52.632 38.52 38.52 0.00 6.01
2197 7214 2.488852 AATTCAAACGGACGCGCGTC 62.489 55.000 45.60 45.60 43.87 5.19
2205 7222 2.496171 GACGCGCGTCCGTTTTTC 60.496 61.111 44.30 23.38 42.24 2.29
2206 7223 4.344109 ACGCGCGTCCGTTTTTCG 62.344 61.111 32.73 0.00 38.47 3.46
2207 7224 4.344109 CGCGCGTCCGTTTTTCGT 62.344 61.111 24.19 0.00 37.94 3.85
2208 7225 2.496171 GCGCGTCCGTTTTTCGTC 60.496 61.111 8.43 0.00 37.94 4.20
2209 7226 2.169327 CGCGTCCGTTTTTCGTCC 59.831 61.111 0.00 0.00 37.94 4.79
2210 7227 2.169327 GCGTCCGTTTTTCGTCCG 59.831 61.111 0.00 0.00 37.94 4.79
2211 7228 2.169327 CGTCCGTTTTTCGTCCGC 59.831 61.111 0.00 0.00 37.94 5.54
2212 7229 2.169327 GTCCGTTTTTCGTCCGCG 59.831 61.111 0.00 0.00 37.94 6.46
2213 7230 3.037249 TCCGTTTTTCGTCCGCGG 61.037 61.111 22.12 22.12 43.32 6.46
2214 7231 3.037249 CCGTTTTTCGTCCGCGGA 61.037 61.111 27.28 27.28 44.57 5.54
2215 7232 2.169327 CGTTTTTCGTCCGCGGAC 59.831 61.111 41.75 41.75 41.40 4.79
2223 7240 4.446413 GTCCGCGGACGACCCATT 62.446 66.667 39.77 0.00 43.93 3.16
2224 7241 4.137872 TCCGCGGACGACCCATTC 62.138 66.667 27.28 0.00 43.93 2.67
2228 7245 4.524318 CGGACGACCCATTCCCGG 62.524 72.222 0.00 0.00 36.81 5.73
2229 7246 4.851179 GGACGACCCATTCCCGGC 62.851 72.222 0.00 0.00 34.14 6.13
2230 7247 4.851179 GACGACCCATTCCCGGCC 62.851 72.222 0.00 0.00 0.00 6.13
2233 7250 3.820843 GACCCATTCCCGGCCCAT 61.821 66.667 0.00 0.00 0.00 4.00
2234 7251 3.355344 ACCCATTCCCGGCCCATT 61.355 61.111 0.00 0.00 0.00 3.16
2235 7252 2.042025 CCCATTCCCGGCCCATTT 60.042 61.111 0.00 0.00 0.00 2.32
2236 7253 1.688884 CCCATTCCCGGCCCATTTT 60.689 57.895 0.00 0.00 0.00 1.82
2237 7254 1.271127 CCCATTCCCGGCCCATTTTT 61.271 55.000 0.00 0.00 0.00 1.94
2255 7272 3.829886 TTTTAGCCTGATTTGCGTCAG 57.170 42.857 6.60 6.60 44.12 3.51
2256 7273 1.086696 TTAGCCTGATTTGCGTCAGC 58.913 50.000 7.77 4.71 43.36 4.26
2275 7292 3.179265 CGGACGCGTGATGGACAC 61.179 66.667 20.70 0.00 45.11 3.67
2282 7299 3.545481 GTGATGGACACGCGCTCG 61.545 66.667 5.73 0.00 39.78 5.03
2288 7305 4.477975 GACACGCGCTCGCCTACT 62.478 66.667 5.73 0.00 39.84 2.57
2289 7306 3.966026 GACACGCGCTCGCCTACTT 62.966 63.158 5.73 0.00 39.84 2.24
2290 7307 3.248171 CACGCGCTCGCCTACTTC 61.248 66.667 5.73 0.00 39.84 3.01
2291 7308 3.441290 ACGCGCTCGCCTACTTCT 61.441 61.111 5.73 0.00 39.84 2.85
2292 7309 2.951745 CGCGCTCGCCTACTTCTG 60.952 66.667 5.56 0.00 37.98 3.02
2293 7310 2.182030 GCGCTCGCCTACTTCTGT 59.818 61.111 0.00 0.00 34.56 3.41
2294 7311 1.874466 GCGCTCGCCTACTTCTGTC 60.874 63.158 0.00 0.00 34.56 3.51
2295 7312 1.226717 CGCTCGCCTACTTCTGTCC 60.227 63.158 0.00 0.00 0.00 4.02
2296 7313 1.142097 GCTCGCCTACTTCTGTCCC 59.858 63.158 0.00 0.00 0.00 4.46
2297 7314 1.817209 CTCGCCTACTTCTGTCCCC 59.183 63.158 0.00 0.00 0.00 4.81
2298 7315 2.005960 CTCGCCTACTTCTGTCCCCG 62.006 65.000 0.00 0.00 0.00 5.73
2299 7316 2.901042 GCCTACTTCTGTCCCCGG 59.099 66.667 0.00 0.00 0.00 5.73
2300 7317 2.732619 GCCTACTTCTGTCCCCGGG 61.733 68.421 15.80 15.80 0.00 5.73
2301 7318 2.732619 CCTACTTCTGTCCCCGGGC 61.733 68.421 17.73 2.17 0.00 6.13
2302 7319 2.686106 TACTTCTGTCCCCGGGCC 60.686 66.667 17.73 8.41 0.00 5.80
2319 7336 4.624364 CCGCTGGTCTGTGGCACA 62.624 66.667 20.76 20.76 0.00 4.57
2320 7337 2.359107 CGCTGGTCTGTGGCACAT 60.359 61.111 22.35 0.00 44.52 3.21
2321 7338 1.968017 CGCTGGTCTGTGGCACATT 60.968 57.895 22.35 0.00 44.52 2.71
2322 7339 1.582968 GCTGGTCTGTGGCACATTG 59.417 57.895 22.35 10.82 44.52 2.82
2323 7340 1.870055 GCTGGTCTGTGGCACATTGG 61.870 60.000 22.35 10.02 44.52 3.16
2324 7341 1.870055 CTGGTCTGTGGCACATTGGC 61.870 60.000 22.35 12.00 44.52 4.52
2332 7349 3.134127 GCACATTGGCCTCCCGTC 61.134 66.667 3.32 0.00 0.00 4.79
2333 7350 2.671070 CACATTGGCCTCCCGTCT 59.329 61.111 3.32 0.00 0.00 4.18
2334 7351 1.450312 CACATTGGCCTCCCGTCTC 60.450 63.158 3.32 0.00 0.00 3.36
2335 7352 1.918293 ACATTGGCCTCCCGTCTCA 60.918 57.895 3.32 0.00 0.00 3.27
2336 7353 1.274703 ACATTGGCCTCCCGTCTCAT 61.275 55.000 3.32 0.00 0.00 2.90
2337 7354 0.533755 CATTGGCCTCCCGTCTCATC 60.534 60.000 3.32 0.00 0.00 2.92
2338 7355 1.700042 ATTGGCCTCCCGTCTCATCC 61.700 60.000 3.32 0.00 0.00 3.51
2339 7356 2.444895 GGCCTCCCGTCTCATCCT 60.445 66.667 0.00 0.00 0.00 3.24
2340 7357 2.801631 GGCCTCCCGTCTCATCCTG 61.802 68.421 0.00 0.00 0.00 3.86
2341 7358 2.818132 CCTCCCGTCTCATCCTGC 59.182 66.667 0.00 0.00 0.00 4.85
2342 7359 2.415010 CTCCCGTCTCATCCTGCG 59.585 66.667 0.00 0.00 0.00 5.18
2343 7360 3.144120 CTCCCGTCTCATCCTGCGG 62.144 68.421 0.00 0.00 43.40 5.69
2344 7361 4.899239 CCCGTCTCATCCTGCGGC 62.899 72.222 0.00 0.00 42.54 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.032528 TTCGGTTCCAGGCAGCTG 59.967 61.111 10.11 10.11 0.00 4.24
32 33 1.145803 GAGGTTTCGTTCGGTTCCAG 58.854 55.000 0.00 0.00 0.00 3.86
33 34 0.598158 CGAGGTTTCGTTCGGTTCCA 60.598 55.000 0.00 0.00 41.84 3.53
34 35 2.147820 CGAGGTTTCGTTCGGTTCC 58.852 57.895 0.00 0.00 41.84 3.62
44 45 1.134401 TCATCTCCATGGCGAGGTTTC 60.134 52.381 15.46 0.00 0.00 2.78
45 46 0.911769 TCATCTCCATGGCGAGGTTT 59.088 50.000 15.46 0.00 0.00 3.27
46 47 0.467384 CTCATCTCCATGGCGAGGTT 59.533 55.000 15.46 0.00 0.00 3.50
47 48 1.406065 CCTCATCTCCATGGCGAGGT 61.406 60.000 21.92 5.92 38.76 3.85
48 49 1.370437 CCTCATCTCCATGGCGAGG 59.630 63.158 18.88 18.88 37.52 4.63
49 50 1.370437 CCCTCATCTCCATGGCGAG 59.630 63.158 10.73 11.08 0.00 5.03
50 51 2.811514 GCCCTCATCTCCATGGCGA 61.812 63.158 6.94 6.94 31.55 5.54
51 52 2.281345 GCCCTCATCTCCATGGCG 60.281 66.667 6.96 0.00 31.55 5.69
52 53 2.114838 GGCCCTCATCTCCATGGC 59.885 66.667 6.96 0.00 41.42 4.40
53 54 2.429058 CGGCCCTCATCTCCATGG 59.571 66.667 4.97 4.97 0.00 3.66
55 56 3.564218 GGCGGCCCTCATCTCCAT 61.564 66.667 8.12 0.00 0.00 3.41
58 59 4.593864 GACGGCGGCCCTCATCTC 62.594 72.222 14.55 0.00 0.00 2.75
73 74 2.106332 CCCTACCGGCATGTCGAC 59.894 66.667 23.62 9.11 0.00 4.20
74 75 2.043752 TCCCTACCGGCATGTCGA 60.044 61.111 23.62 0.00 0.00 4.20
75 76 2.417516 CTCCCTACCGGCATGTCG 59.582 66.667 13.99 13.99 0.00 4.35
76 77 2.109181 GCTCCCTACCGGCATGTC 59.891 66.667 0.00 0.00 0.00 3.06
77 78 3.480133 GGCTCCCTACCGGCATGT 61.480 66.667 0.00 0.00 0.00 3.21
78 79 3.164269 AGGCTCCCTACCGGCATG 61.164 66.667 0.00 0.00 28.47 4.06
79 80 2.020100 TAGAGGCTCCCTACCGGCAT 62.020 60.000 11.71 0.00 31.76 4.40
81 82 1.904378 CTAGAGGCTCCCTACCGGC 60.904 68.421 11.71 0.00 31.76 6.13
84 85 1.904378 CGGCTAGAGGCTCCCTACC 60.904 68.421 11.71 7.12 41.46 3.18
85 86 2.566570 GCGGCTAGAGGCTCCCTAC 61.567 68.421 11.71 0.00 41.46 3.18
86 87 2.203509 GCGGCTAGAGGCTCCCTA 60.204 66.667 11.71 0.00 41.46 3.53
93 94 3.541713 GTGAGGGGCGGCTAGAGG 61.542 72.222 9.56 0.00 0.00 3.69
96 97 3.854669 CCAGTGAGGGGCGGCTAG 61.855 72.222 9.56 0.00 0.00 3.42
97 98 4.715130 ACCAGTGAGGGGCGGCTA 62.715 66.667 9.56 0.00 43.89 3.93
101 102 4.087892 CAGGACCAGTGAGGGGCG 62.088 72.222 0.00 0.00 43.89 6.13
104 105 2.985456 GAGCAGGACCAGTGAGGG 59.015 66.667 0.00 0.00 43.89 4.30
105 106 2.575993 CGAGCAGGACCAGTGAGG 59.424 66.667 0.00 0.00 45.67 3.86
106 107 2.125753 GCGAGCAGGACCAGTGAG 60.126 66.667 0.00 0.00 0.00 3.51
107 108 4.056125 CGCGAGCAGGACCAGTGA 62.056 66.667 0.00 0.00 0.00 3.41
133 134 1.669115 CTCGATATGGCCTTGGCCG 60.669 63.158 23.81 12.59 0.00 6.13
134 135 0.603975 GTCTCGATATGGCCTTGGCC 60.604 60.000 22.91 22.91 0.00 5.36
137 138 0.673985 TCCGTCTCGATATGGCCTTG 59.326 55.000 3.32 0.00 0.00 3.61
139 140 1.178276 GATCCGTCTCGATATGGCCT 58.822 55.000 3.32 0.00 0.00 5.19
141 142 1.135257 CCAGATCCGTCTCGATATGGC 60.135 57.143 4.19 0.00 42.88 4.40
142 143 2.929531 CCAGATCCGTCTCGATATGG 57.070 55.000 2.65 2.65 43.27 2.74
144 145 3.078097 CTGTCCAGATCCGTCTCGATAT 58.922 50.000 0.00 0.00 30.42 1.63
146 147 1.313772 CTGTCCAGATCCGTCTCGAT 58.686 55.000 0.00 0.00 30.42 3.59
148 149 0.748367 TCCTGTCCAGATCCGTCTCG 60.748 60.000 0.00 0.00 30.42 4.04
149 150 0.741915 GTCCTGTCCAGATCCGTCTC 59.258 60.000 0.00 0.00 30.42 3.36
151 152 0.173708 GTGTCCTGTCCAGATCCGTC 59.826 60.000 0.00 0.00 0.00 4.79
152 153 1.258445 GGTGTCCTGTCCAGATCCGT 61.258 60.000 0.00 0.00 0.00 4.69
159 160 1.257750 CGGATCTGGTGTCCTGTCCA 61.258 60.000 0.00 0.00 33.46 4.02
160 161 1.517832 CGGATCTGGTGTCCTGTCC 59.482 63.158 0.00 0.00 33.46 4.02
161 162 1.153549 GCGGATCTGGTGTCCTGTC 60.154 63.158 3.14 0.00 33.46 3.51
162 163 1.892819 CTGCGGATCTGGTGTCCTGT 61.893 60.000 3.14 0.00 33.46 4.00
163 164 1.153489 CTGCGGATCTGGTGTCCTG 60.153 63.158 3.14 0.00 33.46 3.86
164 165 3.023949 GCTGCGGATCTGGTGTCCT 62.024 63.158 3.14 0.00 33.46 3.85
165 166 2.512515 GCTGCGGATCTGGTGTCC 60.513 66.667 3.14 0.00 0.00 4.02
166 167 2.512515 GGCTGCGGATCTGGTGTC 60.513 66.667 3.14 0.00 0.00 3.67
167 168 3.320879 CTGGCTGCGGATCTGGTGT 62.321 63.158 3.14 0.00 0.00 4.16
168 169 2.513204 CTGGCTGCGGATCTGGTG 60.513 66.667 3.14 0.00 0.00 4.17
169 170 3.005539 ACTGGCTGCGGATCTGGT 61.006 61.111 3.14 0.00 0.00 4.00
171 172 2.513204 CCACTGGCTGCGGATCTG 60.513 66.667 0.00 0.00 0.00 2.90
172 173 2.685017 TCCACTGGCTGCGGATCT 60.685 61.111 0.00 0.00 0.00 2.75
174 175 4.479993 GCTCCACTGGCTGCGGAT 62.480 66.667 0.00 0.00 0.00 4.18
179 180 4.729918 GGGTGGCTCCACTGGCTG 62.730 72.222 17.57 0.00 45.52 4.85
181 182 4.052518 ATGGGTGGCTCCACTGGC 62.053 66.667 17.57 2.58 45.52 4.85
183 184 2.753043 GCATGGGTGGCTCCACTG 60.753 66.667 17.57 10.04 45.52 3.66
184 185 4.415150 CGCATGGGTGGCTCCACT 62.415 66.667 17.57 0.00 45.52 4.00
205 206 2.796483 TACATGGCTGACGGTGTGGC 62.796 60.000 0.00 0.00 0.00 5.01
206 207 0.740868 CTACATGGCTGACGGTGTGG 60.741 60.000 0.00 0.00 0.00 4.17
207 208 0.740868 CCTACATGGCTGACGGTGTG 60.741 60.000 0.00 0.00 0.00 3.82
208 209 1.192146 ACCTACATGGCTGACGGTGT 61.192 55.000 0.00 0.00 40.22 4.16
210 211 0.249398 GAACCTACATGGCTGACGGT 59.751 55.000 0.00 0.00 40.22 4.83
211 212 0.462047 GGAACCTACATGGCTGACGG 60.462 60.000 0.00 0.00 40.22 4.79
212 213 3.065575 GGAACCTACATGGCTGACG 57.934 57.895 0.00 0.00 40.22 4.35
259 260 3.579302 TTGGGGGTGGCAGTCAGG 61.579 66.667 0.00 0.00 0.00 3.86
260 261 2.282462 GTTGGGGGTGGCAGTCAG 60.282 66.667 0.00 0.00 0.00 3.51
262 263 3.569200 GAGGTTGGGGGTGGCAGTC 62.569 68.421 0.00 0.00 0.00 3.51
263 264 3.580319 GAGGTTGGGGGTGGCAGT 61.580 66.667 0.00 0.00 0.00 4.40
264 265 4.366684 GGAGGTTGGGGGTGGCAG 62.367 72.222 0.00 0.00 0.00 4.85
268 269 3.979497 GTGGGGAGGTTGGGGGTG 61.979 72.222 0.00 0.00 0.00 4.61
273 274 4.760047 CTCGCGTGGGGAGGTTGG 62.760 72.222 5.77 0.00 38.66 3.77
274 275 3.691342 TCTCGCGTGGGGAGGTTG 61.691 66.667 5.77 0.00 41.90 3.77
297 298 1.760086 AGATCCTGTGAGGCGGAGG 60.760 63.158 0.00 0.00 34.61 4.30
298 299 1.440893 CAGATCCTGTGAGGCGGAG 59.559 63.158 0.00 0.00 34.61 4.63
299 300 2.725312 GCAGATCCTGTGAGGCGGA 61.725 63.158 0.00 0.00 34.61 5.54
300 301 2.202987 GCAGATCCTGTGAGGCGG 60.203 66.667 0.00 0.00 34.61 6.13
301 302 2.202987 GGCAGATCCTGTGAGGCG 60.203 66.667 0.00 0.00 34.61 5.52
303 304 2.202987 GCGGCAGATCCTGTGAGG 60.203 66.667 0.00 0.00 36.46 3.86
304 305 2.584418 CGCGGCAGATCCTGTGAG 60.584 66.667 0.00 0.00 33.43 3.51
305 306 3.068064 TCGCGGCAGATCCTGTGA 61.068 61.111 6.13 0.00 33.43 3.58
306 307 2.584418 CTCGCGGCAGATCCTGTG 60.584 66.667 6.13 0.00 33.43 3.66
308 309 3.531207 TCCTCGCGGCAGATCCTG 61.531 66.667 6.13 0.00 34.12 3.86
309 310 3.532155 GTCCTCGCGGCAGATCCT 61.532 66.667 6.13 0.00 0.00 3.24
310 311 4.593864 GGTCCTCGCGGCAGATCC 62.594 72.222 6.13 0.00 0.00 3.36
311 312 3.781770 CTGGTCCTCGCGGCAGATC 62.782 68.421 6.13 1.32 0.00 2.75
312 313 3.842923 CTGGTCCTCGCGGCAGAT 61.843 66.667 6.13 0.00 0.00 2.90
364 365 4.106925 CTCCTCCACCCCAGCTGC 62.107 72.222 8.66 0.00 0.00 5.25
365 366 4.106925 GCTCCTCCACCCCAGCTG 62.107 72.222 6.78 6.78 0.00 4.24
428 429 4.838486 CTCGCGTCGCCTCCACTC 62.838 72.222 12.44 0.00 0.00 3.51
446 447 0.814010 CATCGGTTCGAATCACCCCC 60.814 60.000 9.48 0.00 39.99 5.40
448 449 1.571919 CTCATCGGTTCGAATCACCC 58.428 55.000 9.48 0.55 39.99 4.61
449 450 0.931005 GCTCATCGGTTCGAATCACC 59.069 55.000 9.48 1.57 39.99 4.02
450 451 0.572590 CGCTCATCGGTTCGAATCAC 59.427 55.000 9.48 0.00 39.99 3.06
452 453 1.560292 GCGCTCATCGGTTCGAATC 59.440 57.895 0.00 0.00 39.99 2.52
453 454 3.706140 GCGCTCATCGGTTCGAAT 58.294 55.556 0.00 0.00 39.99 3.34
461 462 1.010935 ACAGACACAAGCGCTCATCG 61.011 55.000 12.06 1.94 42.12 3.84
463 464 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
464 465 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
465 466 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
466 467 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
467 468 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
521 3742 1.429463 GCCGTGTTGAACCTAGTCAG 58.571 55.000 0.00 0.00 0.00 3.51
525 3746 1.369625 GATGGCCGTGTTGAACCTAG 58.630 55.000 0.00 0.00 0.00 3.02
531 3752 2.388310 TAATTCGATGGCCGTGTTGA 57.612 45.000 0.00 0.00 39.75 3.18
533 3754 1.395608 CGTTAATTCGATGGCCGTGTT 59.604 47.619 0.00 0.00 39.75 3.32
593 3816 2.805353 CGTCCGTGGAAGTGAGCG 60.805 66.667 0.00 0.00 0.00 5.03
671 4336 6.721571 TTCTGAAATCCGATACAACTGAAC 57.278 37.500 0.00 0.00 0.00 3.18
937 4619 2.125350 CTCTCTTGCCCTGCGTCC 60.125 66.667 0.00 0.00 0.00 4.79
945 4630 1.064017 TCTCTCTCCCTCTCTCTTGCC 60.064 57.143 0.00 0.00 0.00 4.52
961 4646 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1107 4792 2.433994 GCCCAGCAGAGGAGAGGAG 61.434 68.421 0.00 0.00 0.00 3.69
1119 4816 2.114838 GGATCCATCCAGCCCAGC 59.885 66.667 6.95 0.00 46.38 4.85
1173 5884 8.699130 ACAGAAAGAAAGAAAAGACCAATCAAT 58.301 29.630 0.00 0.00 0.00 2.57
1182 5893 5.440610 AGGCAGACAGAAAGAAAGAAAAGA 58.559 37.500 0.00 0.00 0.00 2.52
1183 5894 5.764487 AGGCAGACAGAAAGAAAGAAAAG 57.236 39.130 0.00 0.00 0.00 2.27
1184 5895 5.652014 TCAAGGCAGACAGAAAGAAAGAAAA 59.348 36.000 0.00 0.00 0.00 2.29
1185 5896 5.192927 TCAAGGCAGACAGAAAGAAAGAAA 58.807 37.500 0.00 0.00 0.00 2.52
1186 5897 4.780815 TCAAGGCAGACAGAAAGAAAGAA 58.219 39.130 0.00 0.00 0.00 2.52
1434 6168 8.183104 AGCAGCATTTACAGACTGATATACTA 57.817 34.615 10.08 0.00 31.67 1.82
1435 6169 7.060383 AGCAGCATTTACAGACTGATATACT 57.940 36.000 10.08 0.00 31.67 2.12
1436 6170 7.721286 AAGCAGCATTTACAGACTGATATAC 57.279 36.000 10.08 0.00 31.67 1.47
1500 6235 8.609176 GCTGAAATTTATTCGGTTGTAGTATGA 58.391 33.333 0.00 0.00 0.00 2.15
1501 6236 8.612619 AGCTGAAATTTATTCGGTTGTAGTATG 58.387 33.333 0.00 0.00 0.00 2.39
1502 6237 8.732746 AGCTGAAATTTATTCGGTTGTAGTAT 57.267 30.769 0.00 0.00 0.00 2.12
1503 6238 8.038944 AGAGCTGAAATTTATTCGGTTGTAGTA 58.961 33.333 0.00 0.00 0.00 1.82
1504 6239 6.879458 AGAGCTGAAATTTATTCGGTTGTAGT 59.121 34.615 0.00 0.00 0.00 2.73
1505 6240 7.064609 TCAGAGCTGAAATTTATTCGGTTGTAG 59.935 37.037 0.00 0.00 36.53 2.74
1553 6291 2.397413 AAACCTGCTCACCGACTGGG 62.397 60.000 0.00 0.00 40.75 4.45
1611 6352 8.367720 GGAGAAATATCGCCACACAATGAGTG 62.368 46.154 3.80 3.80 44.29 3.51
1612 6353 4.517285 AGAAATATCGCCACACAATGAGT 58.483 39.130 0.00 0.00 0.00 3.41
1613 6354 4.024556 GGAGAAATATCGCCACACAATGAG 60.025 45.833 0.00 0.00 44.29 2.90
1657 6400 5.182001 GGTTACCAGCAATGAAGCATATAGG 59.818 44.000 0.00 0.00 36.85 2.57
1706 6456 4.382754 GCATTAGCACCGTCAAAAGAAAAG 59.617 41.667 0.00 0.00 41.58 2.27
1718 6470 1.602191 GAAACAACGCATTAGCACCG 58.398 50.000 0.00 0.00 42.27 4.94
1742 6494 3.244946 GGGAACAGAGGGAGTAGCTTTTT 60.245 47.826 0.00 0.00 0.00 1.94
1743 6495 2.306219 GGGAACAGAGGGAGTAGCTTTT 59.694 50.000 0.00 0.00 0.00 2.27
1744 6496 1.909986 GGGAACAGAGGGAGTAGCTTT 59.090 52.381 0.00 0.00 0.00 3.51
1745 6497 1.079658 AGGGAACAGAGGGAGTAGCTT 59.920 52.381 0.00 0.00 0.00 3.74
1746 6498 0.713579 AGGGAACAGAGGGAGTAGCT 59.286 55.000 0.00 0.00 0.00 3.32
1747 6499 1.574263 AAGGGAACAGAGGGAGTAGC 58.426 55.000 0.00 0.00 0.00 3.58
1748 6500 4.354662 AGTAAAGGGAACAGAGGGAGTAG 58.645 47.826 0.00 0.00 0.00 2.57
1749 6501 4.351127 GAGTAAAGGGAACAGAGGGAGTA 58.649 47.826 0.00 0.00 0.00 2.59
1750 6502 3.174779 GAGTAAAGGGAACAGAGGGAGT 58.825 50.000 0.00 0.00 0.00 3.85
1751 6503 2.502130 GGAGTAAAGGGAACAGAGGGAG 59.498 54.545 0.00 0.00 0.00 4.30
1752 6504 2.113777 AGGAGTAAAGGGAACAGAGGGA 59.886 50.000 0.00 0.00 0.00 4.20
1753 6505 2.552367 AGGAGTAAAGGGAACAGAGGG 58.448 52.381 0.00 0.00 0.00 4.30
1754 6506 4.345547 GGATAGGAGTAAAGGGAACAGAGG 59.654 50.000 0.00 0.00 0.00 3.69
1755 6507 4.038162 CGGATAGGAGTAAAGGGAACAGAG 59.962 50.000 0.00 0.00 0.00 3.35
1756 6508 3.958798 CGGATAGGAGTAAAGGGAACAGA 59.041 47.826 0.00 0.00 0.00 3.41
1757 6509 3.958798 TCGGATAGGAGTAAAGGGAACAG 59.041 47.826 0.00 0.00 0.00 3.16
1758 6510 3.703052 GTCGGATAGGAGTAAAGGGAACA 59.297 47.826 0.00 0.00 0.00 3.18
1759 6511 3.703052 TGTCGGATAGGAGTAAAGGGAAC 59.297 47.826 0.00 0.00 0.00 3.62
1760 6512 3.703052 GTGTCGGATAGGAGTAAAGGGAA 59.297 47.826 0.00 0.00 0.00 3.97
1761 6513 3.294214 GTGTCGGATAGGAGTAAAGGGA 58.706 50.000 0.00 0.00 0.00 4.20
1764 6516 5.341617 GTCTTGTGTCGGATAGGAGTAAAG 58.658 45.833 0.00 0.00 0.00 1.85
1776 6528 2.734670 TGTCTAAACGTCTTGTGTCGG 58.265 47.619 0.00 0.00 0.00 4.79
1778 6530 4.748102 TGGATTGTCTAAACGTCTTGTGTC 59.252 41.667 0.00 0.00 0.00 3.67
1779 6531 4.699637 TGGATTGTCTAAACGTCTTGTGT 58.300 39.130 0.00 0.00 0.00 3.72
1780 6532 4.988540 TCTGGATTGTCTAAACGTCTTGTG 59.011 41.667 0.00 0.00 0.00 3.33
1781 6533 4.989168 GTCTGGATTGTCTAAACGTCTTGT 59.011 41.667 0.00 0.00 0.00 3.16
1783 6535 5.209818 TGTCTGGATTGTCTAAACGTCTT 57.790 39.130 0.00 0.00 0.00 3.01
1799 6785 3.508744 ACTGTTTTGTGCTTTGTCTGG 57.491 42.857 0.00 0.00 0.00 3.86
1801 6787 4.218417 ACTGAACTGTTTTGTGCTTTGTCT 59.782 37.500 0.00 0.00 0.00 3.41
1809 6795 3.370978 AGTCGACACTGAACTGTTTTGTG 59.629 43.478 19.50 18.51 35.09 3.33
1853 6851 6.890393 TGCCTCTGCATCAGAACTTCTGAC 62.890 50.000 21.36 11.80 44.78 3.51
1854 6852 4.885989 TGCCTCTGCATCAGAACTTCTGA 61.886 47.826 21.22 21.22 46.20 3.27
1855 6853 2.008329 GCCTCTGCATCAGAACTTCTG 58.992 52.381 12.02 12.02 40.18 3.02
1857 6855 2.105006 TGCCTCTGCATCAGAACTTC 57.895 50.000 0.00 0.00 44.23 3.01
1869 6873 1.500474 TTGATCCTACCCTGCCTCTG 58.500 55.000 0.00 0.00 0.00 3.35
1875 6879 4.559862 AAGACAGTTTGATCCTACCCTG 57.440 45.455 0.00 0.00 0.00 4.45
1880 6884 9.720769 CCTACTTAAAAAGACAGTTTGATCCTA 57.279 33.333 0.00 0.00 0.00 2.94
1929 6933 5.558818 TGCCTACCGTACCAAAGATAAAAA 58.441 37.500 0.00 0.00 0.00 1.94
1931 6935 4.467082 TCTGCCTACCGTACCAAAGATAAA 59.533 41.667 0.00 0.00 0.00 1.40
1932 6936 4.025360 TCTGCCTACCGTACCAAAGATAA 58.975 43.478 0.00 0.00 0.00 1.75
1934 6938 2.431057 CTCTGCCTACCGTACCAAAGAT 59.569 50.000 0.00 0.00 0.00 2.40
1935 6939 1.822990 CTCTGCCTACCGTACCAAAGA 59.177 52.381 0.00 0.00 0.00 2.52
1936 6940 1.549170 ACTCTGCCTACCGTACCAAAG 59.451 52.381 0.00 0.00 0.00 2.77
1937 6941 1.636148 ACTCTGCCTACCGTACCAAA 58.364 50.000 0.00 0.00 0.00 3.28
1938 6942 1.636148 AACTCTGCCTACCGTACCAA 58.364 50.000 0.00 0.00 0.00 3.67
1939 6943 1.636148 AAACTCTGCCTACCGTACCA 58.364 50.000 0.00 0.00 0.00 3.25
1941 6945 3.057033 TGAGAAAACTCTGCCTACCGTAC 60.057 47.826 0.00 0.00 0.00 3.67
1942 6946 3.159472 TGAGAAAACTCTGCCTACCGTA 58.841 45.455 0.00 0.00 0.00 4.02
1943 6947 1.968493 TGAGAAAACTCTGCCTACCGT 59.032 47.619 0.00 0.00 0.00 4.83
1944 6948 2.231478 TCTGAGAAAACTCTGCCTACCG 59.769 50.000 0.00 0.00 0.00 4.02
1945 6949 3.963428 TCTGAGAAAACTCTGCCTACC 57.037 47.619 0.00 0.00 0.00 3.18
1946 6950 5.140747 TCTTCTGAGAAAACTCTGCCTAC 57.859 43.478 0.00 0.00 0.00 3.18
1947 6951 5.788450 CTTCTTCTGAGAAAACTCTGCCTA 58.212 41.667 0.00 0.00 41.19 3.93
1948 6952 4.640364 CTTCTTCTGAGAAAACTCTGCCT 58.360 43.478 0.00 0.00 41.19 4.75
1949 6953 3.188254 GCTTCTTCTGAGAAAACTCTGCC 59.812 47.826 0.00 0.00 41.19 4.85
1950 6954 3.812053 TGCTTCTTCTGAGAAAACTCTGC 59.188 43.478 0.00 0.00 41.19 4.26
1951 6955 5.106634 CCATGCTTCTTCTGAGAAAACTCTG 60.107 44.000 0.00 0.00 41.19 3.35
1952 6956 5.002516 CCATGCTTCTTCTGAGAAAACTCT 58.997 41.667 0.00 0.00 41.19 3.24
1953 6957 4.759183 ACCATGCTTCTTCTGAGAAAACTC 59.241 41.667 0.00 0.00 41.19 3.01
1954 6958 4.723309 ACCATGCTTCTTCTGAGAAAACT 58.277 39.130 0.00 0.00 41.19 2.66
1955 6959 4.516698 TGACCATGCTTCTTCTGAGAAAAC 59.483 41.667 0.00 0.00 41.19 2.43
1956 6960 4.717877 TGACCATGCTTCTTCTGAGAAAA 58.282 39.130 0.00 0.00 41.19 2.29
1957 6961 4.356405 TGACCATGCTTCTTCTGAGAAA 57.644 40.909 0.00 0.00 41.19 2.52
1958 6962 4.356405 TTGACCATGCTTCTTCTGAGAA 57.644 40.909 0.00 0.00 39.54 2.87
1959 6963 4.067896 GTTTGACCATGCTTCTTCTGAGA 58.932 43.478 0.00 0.00 0.00 3.27
1960 6964 4.070716 AGTTTGACCATGCTTCTTCTGAG 58.929 43.478 0.00 0.00 0.00 3.35
1961 6965 4.090761 AGTTTGACCATGCTTCTTCTGA 57.909 40.909 0.00 0.00 0.00 3.27
1962 6966 5.335191 GGTTAGTTTGACCATGCTTCTTCTG 60.335 44.000 0.00 0.00 37.14 3.02
1963 6967 4.762251 GGTTAGTTTGACCATGCTTCTTCT 59.238 41.667 0.00 0.00 37.14 2.85
1964 6968 4.518970 TGGTTAGTTTGACCATGCTTCTTC 59.481 41.667 0.00 0.00 42.06 2.87
1965 6969 4.469657 TGGTTAGTTTGACCATGCTTCTT 58.530 39.130 0.00 0.00 42.06 2.52
1966 6970 4.098914 TGGTTAGTTTGACCATGCTTCT 57.901 40.909 0.00 0.00 42.06 2.85
1967 6971 4.278419 ACTTGGTTAGTTTGACCATGCTTC 59.722 41.667 8.54 0.00 45.96 3.86
1968 6972 4.037923 CACTTGGTTAGTTTGACCATGCTT 59.962 41.667 8.54 0.00 45.96 3.91
1969 6973 3.569701 CACTTGGTTAGTTTGACCATGCT 59.430 43.478 8.54 0.00 45.96 3.79
1970 6974 3.568007 TCACTTGGTTAGTTTGACCATGC 59.432 43.478 8.54 0.00 45.96 4.06
1971 6975 4.821805 ACTCACTTGGTTAGTTTGACCATG 59.178 41.667 7.40 7.40 45.96 3.66
1972 6976 5.048846 ACTCACTTGGTTAGTTTGACCAT 57.951 39.130 0.00 0.00 45.96 3.55
1973 6977 4.497291 ACTCACTTGGTTAGTTTGACCA 57.503 40.909 0.00 0.00 45.09 4.02
1974 6978 8.611654 TTATTACTCACTTGGTTAGTTTGACC 57.388 34.615 0.00 0.00 33.85 4.02
1975 6979 8.228464 GCTTATTACTCACTTGGTTAGTTTGAC 58.772 37.037 0.00 0.00 33.85 3.18
1976 6980 7.117236 CGCTTATTACTCACTTGGTTAGTTTGA 59.883 37.037 0.00 0.00 33.85 2.69
1977 6981 7.234384 CGCTTATTACTCACTTGGTTAGTTTG 58.766 38.462 0.00 0.00 33.85 2.93
1978 6982 6.128363 GCGCTTATTACTCACTTGGTTAGTTT 60.128 38.462 0.00 0.00 33.85 2.66
1979 6983 5.350640 GCGCTTATTACTCACTTGGTTAGTT 59.649 40.000 0.00 0.00 33.85 2.24
1980 6984 4.868734 GCGCTTATTACTCACTTGGTTAGT 59.131 41.667 0.00 0.00 37.68 2.24
1981 6985 4.868171 TGCGCTTATTACTCACTTGGTTAG 59.132 41.667 9.73 0.00 0.00 2.34
1982 6986 4.628333 GTGCGCTTATTACTCACTTGGTTA 59.372 41.667 9.73 0.00 0.00 2.85
1983 6987 3.435671 GTGCGCTTATTACTCACTTGGTT 59.564 43.478 9.73 0.00 0.00 3.67
1984 6988 3.000727 GTGCGCTTATTACTCACTTGGT 58.999 45.455 9.73 0.00 0.00 3.67
1985 6989 2.351726 GGTGCGCTTATTACTCACTTGG 59.648 50.000 9.73 0.00 0.00 3.61
1986 6990 3.000041 TGGTGCGCTTATTACTCACTTG 59.000 45.455 9.73 0.00 0.00 3.16
1987 6991 3.328382 TGGTGCGCTTATTACTCACTT 57.672 42.857 9.73 0.00 0.00 3.16
1988 6992 3.328382 TTGGTGCGCTTATTACTCACT 57.672 42.857 9.73 0.00 0.00 3.41
1989 6993 3.682858 TCTTTGGTGCGCTTATTACTCAC 59.317 43.478 9.73 0.00 0.00 3.51
1990 6994 3.682858 GTCTTTGGTGCGCTTATTACTCA 59.317 43.478 9.73 0.00 0.00 3.41
1991 6995 3.063588 GGTCTTTGGTGCGCTTATTACTC 59.936 47.826 9.73 0.00 0.00 2.59
2004 7008 2.841160 GCCGCGTTTGGTCTTTGGT 61.841 57.895 4.92 0.00 0.00 3.67
2005 7009 2.050442 GCCGCGTTTGGTCTTTGG 60.050 61.111 4.92 0.00 0.00 3.28
2006 7010 1.370414 CTGCCGCGTTTGGTCTTTG 60.370 57.895 4.92 0.00 0.00 2.77
2007 7011 3.030652 CTGCCGCGTTTGGTCTTT 58.969 55.556 4.92 0.00 0.00 2.52
2008 7012 3.660111 GCTGCCGCGTTTGGTCTT 61.660 61.111 4.92 0.00 0.00 3.01
2009 7013 4.927782 TGCTGCCGCGTTTGGTCT 62.928 61.111 4.92 0.00 39.65 3.85
2010 7014 4.389576 CTGCTGCCGCGTTTGGTC 62.390 66.667 4.92 0.00 39.65 4.02
2096 7113 2.409870 CGCCCCATTGGAGTTGCTC 61.410 63.158 3.62 0.00 35.39 4.26
2100 7117 1.227383 GGATCGCCCCATTGGAGTT 59.773 57.895 3.62 0.00 35.07 3.01
2101 7118 1.355718 ATGGATCGCCCCATTGGAGT 61.356 55.000 3.62 0.00 44.11 3.85
2102 7119 1.457604 ATGGATCGCCCCATTGGAG 59.542 57.895 3.62 0.00 44.11 3.86
2103 7120 3.672913 ATGGATCGCCCCATTGGA 58.327 55.556 3.62 0.00 44.11 3.53
2108 7125 1.153249 GACGAAATGGATCGCCCCA 60.153 57.895 0.00 0.00 46.51 4.96
2109 7126 1.892391 GGACGAAATGGATCGCCCC 60.892 63.158 0.00 0.00 46.51 5.80
2110 7127 2.244651 CGGACGAAATGGATCGCCC 61.245 63.158 0.00 0.00 46.51 6.13
2111 7128 2.882366 GCGGACGAAATGGATCGCC 61.882 63.158 0.00 0.00 46.51 5.54
2112 7129 2.626455 GCGGACGAAATGGATCGC 59.374 61.111 0.00 0.00 46.51 4.58
2114 7131 2.882366 GCCGCGGACGAAATGGATC 61.882 63.158 33.48 1.41 43.93 3.36
2115 7132 2.895372 GCCGCGGACGAAATGGAT 60.895 61.111 33.48 0.00 43.93 3.41
2116 7133 4.077184 AGCCGCGGACGAAATGGA 62.077 61.111 33.48 0.00 43.93 3.41
2117 7134 3.864686 CAGCCGCGGACGAAATGG 61.865 66.667 33.48 3.73 43.93 3.16
2118 7135 3.083600 GACAGCCGCGGACGAAATG 62.084 63.158 33.48 18.19 43.93 2.32
2119 7136 2.813908 GACAGCCGCGGACGAAAT 60.814 61.111 33.48 6.94 43.93 2.17
2130 7147 3.047877 CGACCCAAACGGACAGCC 61.048 66.667 0.00 0.00 34.64 4.85
2144 7161 3.170810 TTTTTGTGTCCGCGCCGAC 62.171 57.895 20.04 20.04 0.00 4.79
2145 7162 2.887889 CTTTTTGTGTCCGCGCCGA 61.888 57.895 0.00 0.00 0.00 5.54
2146 7163 2.426752 CTTTTTGTGTCCGCGCCG 60.427 61.111 0.00 0.00 0.00 6.46
2147 7164 1.657181 CACTTTTTGTGTCCGCGCC 60.657 57.895 0.00 0.00 41.53 6.53
2148 7165 3.902234 CACTTTTTGTGTCCGCGC 58.098 55.556 0.00 0.00 41.53 6.86
2149 7166 1.657181 GGCACTTTTTGTGTCCGCG 60.657 57.895 0.00 0.00 44.95 6.46
2150 7167 4.319249 GGCACTTTTTGTGTCCGC 57.681 55.556 0.00 0.00 44.95 5.54
2156 7173 1.360192 GCGCTGAGGCACTTTTTGT 59.640 52.632 0.00 0.00 41.55 2.83
2157 7174 1.727022 CGCGCTGAGGCACTTTTTG 60.727 57.895 5.56 0.00 41.55 2.44
2158 7175 2.639286 CGCGCTGAGGCACTTTTT 59.361 55.556 5.56 0.00 41.55 1.94
2159 7176 4.030452 GCGCGCTGAGGCACTTTT 62.030 61.111 26.67 0.00 41.55 2.27
2165 7182 4.543084 GAATTGGCGCGCTGAGGC 62.543 66.667 32.29 14.61 0.00 4.70
2166 7183 2.198906 TTTGAATTGGCGCGCTGAGG 62.199 55.000 32.29 0.00 0.00 3.86
2167 7184 1.067199 GTTTGAATTGGCGCGCTGAG 61.067 55.000 32.29 0.00 0.00 3.35
2168 7185 1.081509 GTTTGAATTGGCGCGCTGA 60.082 52.632 32.29 19.99 0.00 4.26
2169 7186 2.427765 CGTTTGAATTGGCGCGCTG 61.428 57.895 32.29 0.00 0.00 5.18
2170 7187 2.126888 CGTTTGAATTGGCGCGCT 60.127 55.556 32.29 11.46 0.00 5.92
2171 7188 3.171911 CCGTTTGAATTGGCGCGC 61.172 61.111 25.94 25.94 0.00 6.86
2172 7189 1.795962 GTCCGTTTGAATTGGCGCG 60.796 57.895 0.00 0.00 0.00 6.86
2173 7190 1.795962 CGTCCGTTTGAATTGGCGC 60.796 57.895 0.00 0.00 0.00 6.53
2174 7191 1.795962 GCGTCCGTTTGAATTGGCG 60.796 57.895 0.00 0.00 0.00 5.69
2175 7192 1.795962 CGCGTCCGTTTGAATTGGC 60.796 57.895 0.00 0.00 0.00 4.52
2176 7193 1.795962 GCGCGTCCGTTTGAATTGG 60.796 57.895 8.43 0.00 36.67 3.16
2177 7194 2.137395 CGCGCGTCCGTTTGAATTG 61.137 57.895 24.19 0.00 36.67 2.32
2178 7195 2.172419 CGCGCGTCCGTTTGAATT 59.828 55.556 24.19 0.00 36.67 2.17
2179 7196 3.007070 GACGCGCGTCCGTTTGAAT 62.007 57.895 44.30 17.02 42.24 2.57
2180 7197 3.694394 GACGCGCGTCCGTTTGAA 61.694 61.111 44.30 0.00 42.24 2.69
2188 7205 2.496171 GAAAAACGGACGCGCGTC 60.496 61.111 45.60 45.60 43.87 5.19
2189 7206 4.344109 CGAAAAACGGACGCGCGT 62.344 61.111 38.52 38.52 38.46 6.01
2195 7212 3.285776 CCGCGGACGAAAAACGGAC 62.286 63.158 24.07 0.00 46.71 4.79
2196 7213 3.037249 CCGCGGACGAAAAACGGA 61.037 61.111 24.07 0.00 46.71 4.69
2206 7223 4.446413 AATGGGTCGTCCGCGGAC 62.446 66.667 41.75 41.75 41.40 4.79
2207 7224 4.137872 GAATGGGTCGTCCGCGGA 62.138 66.667 27.28 27.28 38.76 5.54
2211 7228 4.524318 CCGGGAATGGGTCGTCCG 62.524 72.222 0.00 0.00 40.32 4.79
2212 7229 4.851179 GCCGGGAATGGGTCGTCC 62.851 72.222 2.18 0.00 0.00 4.79
2213 7230 4.851179 GGCCGGGAATGGGTCGTC 62.851 72.222 2.18 0.00 0.00 4.20
2216 7233 2.871795 AAATGGGCCGGGAATGGGTC 62.872 60.000 2.18 0.00 0.00 4.46
2217 7234 2.469563 AAAATGGGCCGGGAATGGGT 62.470 55.000 2.18 0.00 0.00 4.51
2218 7235 1.271127 AAAAATGGGCCGGGAATGGG 61.271 55.000 2.18 0.00 0.00 4.00
2219 7236 2.295904 AAAAATGGGCCGGGAATGG 58.704 52.632 2.18 0.00 0.00 3.16
2234 7251 3.611530 GCTGACGCAAATCAGGCTAAAAA 60.612 43.478 10.64 0.00 45.35 1.94
2235 7252 2.095263 GCTGACGCAAATCAGGCTAAAA 60.095 45.455 10.64 0.00 45.35 1.52
2236 7253 1.468520 GCTGACGCAAATCAGGCTAAA 59.531 47.619 10.64 0.00 45.35 1.85
2237 7254 1.086696 GCTGACGCAAATCAGGCTAA 58.913 50.000 10.64 0.00 45.35 3.09
2238 7255 1.083806 CGCTGACGCAAATCAGGCTA 61.084 55.000 10.64 0.00 45.35 3.93
2239 7256 2.393768 CGCTGACGCAAATCAGGCT 61.394 57.895 10.64 0.00 45.35 4.58
2240 7257 2.099062 CGCTGACGCAAATCAGGC 59.901 61.111 10.64 3.90 45.35 4.85
2258 7275 3.179265 GTGTCCATCACGCGTCCG 61.179 66.667 9.86 0.00 37.31 4.79
2265 7282 3.545481 CGAGCGCGTGTCCATCAC 61.545 66.667 8.43 0.00 43.03 3.06
2271 7288 3.966026 AAGTAGGCGAGCGCGTGTC 62.966 63.158 18.76 11.89 43.06 3.67
2272 7289 3.966026 GAAGTAGGCGAGCGCGTGT 62.966 63.158 18.76 1.22 43.06 4.49
2273 7290 3.248171 GAAGTAGGCGAGCGCGTG 61.248 66.667 18.76 0.00 43.06 5.34
2274 7291 3.441290 AGAAGTAGGCGAGCGCGT 61.441 61.111 12.44 14.52 43.06 6.01
2275 7292 2.951745 CAGAAGTAGGCGAGCGCG 60.952 66.667 5.14 5.14 43.06 6.86
2276 7293 1.874466 GACAGAAGTAGGCGAGCGC 60.874 63.158 6.27 6.27 41.06 5.92
2277 7294 1.226717 GGACAGAAGTAGGCGAGCG 60.227 63.158 0.00 0.00 0.00 5.03
2278 7295 1.142097 GGGACAGAAGTAGGCGAGC 59.858 63.158 0.00 0.00 0.00 5.03
2279 7296 1.817209 GGGGACAGAAGTAGGCGAG 59.183 63.158 0.00 0.00 0.00 5.03
2280 7297 2.050350 CGGGGACAGAAGTAGGCGA 61.050 63.158 0.00 0.00 0.00 5.54
2281 7298 2.494918 CGGGGACAGAAGTAGGCG 59.505 66.667 0.00 0.00 0.00 5.52
2282 7299 2.732619 CCCGGGGACAGAAGTAGGC 61.733 68.421 14.71 0.00 0.00 3.93
2283 7300 2.732619 GCCCGGGGACAGAAGTAGG 61.733 68.421 25.28 0.00 0.00 3.18
2284 7301 2.732619 GGCCCGGGGACAGAAGTAG 61.733 68.421 25.28 0.00 0.00 2.57
2285 7302 2.686106 GGCCCGGGGACAGAAGTA 60.686 66.667 25.28 0.00 0.00 2.24
2302 7319 3.907260 ATGTGCCACAGACCAGCGG 62.907 63.158 3.00 0.00 0.00 5.52
2303 7320 1.968017 AATGTGCCACAGACCAGCG 60.968 57.895 3.00 0.00 0.00 5.18
2304 7321 1.582968 CAATGTGCCACAGACCAGC 59.417 57.895 3.00 0.00 0.00 4.85
2305 7322 1.870055 GCCAATGTGCCACAGACCAG 61.870 60.000 3.00 0.00 0.00 4.00
2306 7323 1.902918 GCCAATGTGCCACAGACCA 60.903 57.895 3.00 0.00 0.00 4.02
2307 7324 2.964978 GCCAATGTGCCACAGACC 59.035 61.111 3.00 0.00 0.00 3.85
2315 7332 3.134127 GACGGGAGGCCAATGTGC 61.134 66.667 5.01 0.00 0.00 4.57
2316 7333 1.450312 GAGACGGGAGGCCAATGTG 60.450 63.158 5.01 0.00 40.49 3.21
2317 7334 1.274703 ATGAGACGGGAGGCCAATGT 61.275 55.000 5.01 0.00 40.49 2.71
2318 7335 0.533755 GATGAGACGGGAGGCCAATG 60.534 60.000 5.01 0.00 40.49 2.82
2319 7336 1.700042 GGATGAGACGGGAGGCCAAT 61.700 60.000 5.01 0.00 40.49 3.16
2320 7337 2.367202 GGATGAGACGGGAGGCCAA 61.367 63.158 5.01 0.00 40.49 4.52
2321 7338 2.764128 GGATGAGACGGGAGGCCA 60.764 66.667 5.01 0.00 40.49 5.36
2322 7339 2.444895 AGGATGAGACGGGAGGCC 60.445 66.667 0.00 0.00 40.49 5.19
2323 7340 2.818132 CAGGATGAGACGGGAGGC 59.182 66.667 0.00 0.00 39.69 4.70
2324 7341 2.818132 GCAGGATGAGACGGGAGG 59.182 66.667 0.00 0.00 39.69 4.30
2325 7342 2.415010 CGCAGGATGAGACGGGAG 59.585 66.667 0.00 0.00 38.60 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.