Multiple sequence alignment - TraesCS5D01G369200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G369200 chr5D 100.000 7398 0 0 1 7398 444735174 444727777 0.000000e+00 13662.0
1 TraesCS5D01G369200 chr5B 94.479 3659 136 23 1586 5208 541622066 541618438 0.000000e+00 5578.0
2 TraesCS5D01G369200 chr5B 89.574 2158 105 43 5291 7398 541618436 541616349 0.000000e+00 2628.0
3 TraesCS5D01G369200 chr5B 85.882 1530 101 43 4 1481 541623592 541622126 0.000000e+00 1522.0
4 TraesCS5D01G369200 chr5A 94.021 3663 133 34 1586 5210 561665661 561662047 0.000000e+00 5472.0
5 TraesCS5D01G369200 chr5A 91.087 2042 115 36 5289 7309 561662049 561660054 0.000000e+00 2700.0
6 TraesCS5D01G369200 chr5A 83.824 544 46 25 377 905 561666785 561666269 5.190000e-131 479.0
7 TraesCS5D01G369200 chr5A 87.774 319 25 6 951 1258 561666272 561665957 1.960000e-95 361.0
8 TraesCS5D01G369200 chr5A 84.593 344 35 8 2013 2353 695775938 695776266 7.160000e-85 326.0
9 TraesCS5D01G369200 chr5A 86.813 91 8 3 5205 5292 355734143 355734054 1.700000e-16 99.0
10 TraesCS5D01G369200 chr5A 98.148 54 1 0 7345 7398 561660053 561660000 2.200000e-15 95.3
11 TraesCS5D01G369200 chr4D 84.341 364 41 14 2745 3095 196235483 196235843 7.110000e-90 342.0
12 TraesCS5D01G369200 chr4D 87.912 91 7 4 5204 5291 93828193 93828282 3.650000e-18 104.0
13 TraesCS5D01G369200 chrUn 83.978 362 41 14 2748 3095 35821551 35821193 1.540000e-86 331.0
14 TraesCS5D01G369200 chr2A 83.987 306 37 10 2756 3050 47360227 47360531 4.370000e-72 283.0
15 TraesCS5D01G369200 chr2A 89.286 84 6 2 5208 5291 667018451 667018371 1.310000e-17 102.0
16 TraesCS5D01G369200 chr2A 89.157 83 6 2 5208 5290 667018372 667018451 4.720000e-17 100.0
17 TraesCS5D01G369200 chr2B 84.264 197 24 6 2442 2637 732874395 732874205 1.270000e-42 185.0
18 TraesCS5D01G369200 chr4B 88.043 92 7 3 5200 5290 25847303 25847391 1.020000e-18 106.0
19 TraesCS5D01G369200 chr4B 89.286 84 6 2 5207 5290 25847392 25847312 1.310000e-17 102.0
20 TraesCS5D01G369200 chr3B 86.813 91 10 2 5202 5290 492208332 492208422 4.720000e-17 100.0
21 TraesCS5D01G369200 chr1D 86.957 92 8 3 5202 5292 433188091 433188003 4.720000e-17 100.0
22 TraesCS5D01G369200 chr7D 86.667 90 9 3 5203 5292 37454788 37454874 6.110000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G369200 chr5D 444727777 444735174 7397 True 13662.000000 13662 100.000000 1 7398 1 chr5D.!!$R1 7397
1 TraesCS5D01G369200 chr5B 541616349 541623592 7243 True 3242.666667 5578 89.978333 4 7398 3 chr5B.!!$R1 7394
2 TraesCS5D01G369200 chr5A 561660000 561666785 6785 True 1821.460000 5472 90.970800 377 7398 5 chr5A.!!$R2 7021

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 204 0.540923 AGAGATCCAGAGGCAGCAAC 59.459 55.0 0.00 0.0 0.00 4.17 F
1567 1670 0.322997 CCCTGGCGGTTCCAATGTTA 60.323 55.0 0.00 0.0 46.01 2.41 F
2616 2752 0.745845 CTCCTGAAGGTTCATGGCCG 60.746 60.0 0.00 0.0 36.46 6.13 F
2622 2758 0.958822 AAGGTTCATGGCCGTTTGAC 59.041 50.0 0.00 0.0 0.00 3.18 F
4439 4588 2.031333 CAGTGAGTTTTGCTGCCTCTTC 60.031 50.0 0.00 0.0 0.00 2.87 F
4622 4771 0.453390 GTGATACCTGCTTTGCCTGC 59.547 55.0 0.00 0.0 0.00 4.85 F
6195 6373 0.530744 TACCAAGTCGGCTGCTACTG 59.469 55.0 8.55 0.0 39.03 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 1854 0.031449 GGCAACCAACAAAGCGCTAA 59.969 50.000 12.05 0.00 0.00 3.09 R
3466 3614 0.681175 GCCCACAATCCAAGCAGTTT 59.319 50.000 0.00 0.00 0.00 2.66 R
3777 3926 1.070914 TGCAAGTAACATGACGGACCA 59.929 47.619 0.00 0.00 0.00 4.02 R
4472 4621 4.012374 CCAACAGTAATGCAATCCTGAGT 58.988 43.478 14.51 2.39 31.73 3.41 R
6155 6330 0.108424 GCGTGACAGGAGATTGCTCT 60.108 55.000 0.00 0.00 41.06 4.09 R
6215 6393 0.802607 GCATCTCTTCGTCGGTGACC 60.803 60.000 0.00 0.00 0.00 4.02 R
7363 7583 0.320697 GCCAACCAGACCTTCTACGT 59.679 55.000 0.00 0.00 0.00 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.822164 GGCGTTCTACAAGCCCTCTA 59.178 55.000 0.00 0.00 44.80 2.43
25 26 1.413077 GGCGTTCTACAAGCCCTCTAT 59.587 52.381 0.00 0.00 44.80 1.98
32 33 5.957771 TCTACAAGCCCTCTATGATGTTT 57.042 39.130 0.00 0.00 0.00 2.83
35 36 5.184892 ACAAGCCCTCTATGATGTTTTCT 57.815 39.130 0.00 0.00 0.00 2.52
45 46 2.699954 TGATGTTTTCTTCTCCGGAGC 58.300 47.619 27.39 11.24 0.00 4.70
98 99 7.031372 CCAACATCTTTTGGTCTACATCAATG 58.969 38.462 0.00 0.00 41.18 2.82
100 101 8.464404 CAACATCTTTTGGTCTACATCAATGAT 58.536 33.333 0.00 0.00 0.00 2.45
135 137 9.162733 ACCTTTTTATAGGGGATTCGATTACTA 57.837 33.333 0.00 0.00 39.76 1.82
143 145 5.472820 AGGGGATTCGATTACTACTTCTACG 59.527 44.000 0.00 0.00 0.00 3.51
149 151 5.599732 TCGATTACTACTTCTACGAGCTCT 58.400 41.667 12.85 1.42 0.00 4.09
152 154 6.238157 CGATTACTACTTCTACGAGCTCTTGT 60.238 42.308 12.85 5.80 0.00 3.16
155 157 4.519730 ACTACTTCTACGAGCTCTTGTGTT 59.480 41.667 12.85 0.00 0.00 3.32
156 158 4.323553 ACTTCTACGAGCTCTTGTGTTT 57.676 40.909 12.85 0.00 0.00 2.83
157 159 5.449107 ACTTCTACGAGCTCTTGTGTTTA 57.551 39.130 12.85 0.00 0.00 2.01
173 179 6.995511 TGTGTTTAACAAGTTTGCTCTACT 57.004 33.333 0.00 0.00 35.24 2.57
176 182 6.037830 GTGTTTAACAAGTTTGCTCTACTGGA 59.962 38.462 0.00 0.00 0.00 3.86
178 184 7.284489 TGTTTAACAAGTTTGCTCTACTGGAAT 59.716 33.333 0.00 0.00 0.00 3.01
198 204 0.540923 AGAGATCCAGAGGCAGCAAC 59.459 55.000 0.00 0.00 0.00 4.17
280 286 4.918588 AGGAATGGGACGTATTTTTCAGT 58.081 39.130 0.00 0.00 0.00 3.41
284 290 6.072119 GGAATGGGACGTATTTTTCAGTCTTT 60.072 38.462 0.00 0.00 34.34 2.52
287 293 7.372451 TGGGACGTATTTTTCAGTCTTTATG 57.628 36.000 0.00 0.00 34.34 1.90
360 366 9.561069 AGAATGTATTTGAAGGGTATGTGATAC 57.439 33.333 0.00 0.00 35.00 2.24
362 368 9.920946 AATGTATTTGAAGGGTATGTGATACTT 57.079 29.630 0.00 0.00 36.04 2.24
363 369 8.731275 TGTATTTGAAGGGTATGTGATACTTG 57.269 34.615 0.00 0.00 36.04 3.16
364 370 8.544622 TGTATTTGAAGGGTATGTGATACTTGA 58.455 33.333 0.00 0.00 36.04 3.02
374 380 9.265901 GGGTATGTGATACTTGATATATCATGC 57.734 37.037 22.26 11.18 40.32 4.06
375 381 9.265901 GGTATGTGATACTTGATATATCATGCC 57.734 37.037 22.26 11.70 40.32 4.40
407 416 5.184892 AGAGAAGGCATGGTTGAACTTAT 57.815 39.130 0.00 0.00 0.00 1.73
413 422 1.676006 CATGGTTGAACTTATCCCCGC 59.324 52.381 0.00 0.00 0.00 6.13
416 425 1.379527 GTTGAACTTATCCCCGCTGG 58.620 55.000 0.00 0.00 0.00 4.85
464 473 2.279741 CGCATACCACAACTAGCATGT 58.720 47.619 0.00 0.00 0.00 3.21
477 486 7.381139 CACAACTAGCATGTCGGTTTTTATTTT 59.619 33.333 0.00 0.00 0.00 1.82
479 488 8.846607 CAACTAGCATGTCGGTTTTTATTTTAC 58.153 33.333 0.00 0.00 0.00 2.01
519 532 2.837291 CGGAGGGAGAGGCAGAGG 60.837 72.222 0.00 0.00 0.00 3.69
520 533 2.445654 GGAGGGAGAGGCAGAGGG 60.446 72.222 0.00 0.00 0.00 4.30
547 560 0.673956 CCGTCCACGACAGAGAGAGA 60.674 60.000 0.00 0.00 43.02 3.10
555 568 3.096852 ACGACAGAGAGAGAGAGAGAGA 58.903 50.000 0.00 0.00 0.00 3.10
557 570 3.381590 CGACAGAGAGAGAGAGAGAGAGA 59.618 52.174 0.00 0.00 0.00 3.10
559 572 4.614475 ACAGAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
560 573 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
561 574 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
562 575 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
563 576 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
564 577 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
565 578 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
566 579 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
567 580 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
568 581 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
569 582 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
570 583 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
571 584 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
572 585 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
573 586 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
574 587 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
753 769 2.444421 ACAAATACGGAGGAGAGACGT 58.556 47.619 0.00 0.00 43.88 4.34
769 797 2.043852 GTCTCCTCCTCCTCCGCA 60.044 66.667 0.00 0.00 0.00 5.69
1130 1176 2.156051 GACGCCGTGAGTTCCTCCTT 62.156 60.000 0.00 0.00 0.00 3.36
1132 1178 1.079057 GCCGTGAGTTCCTCCTTCC 60.079 63.158 0.00 0.00 0.00 3.46
1133 1179 1.597461 CCGTGAGTTCCTCCTTCCC 59.403 63.158 0.00 0.00 0.00 3.97
1134 1180 1.597461 CGTGAGTTCCTCCTTCCCC 59.403 63.158 0.00 0.00 0.00 4.81
1136 1182 0.840722 GTGAGTTCCTCCTTCCCCCA 60.841 60.000 0.00 0.00 0.00 4.96
1138 1184 0.547954 GAGTTCCTCCTTCCCCCACT 60.548 60.000 0.00 0.00 0.00 4.00
1153 1208 0.617249 CCACTTCCCCTGCTCTCTCT 60.617 60.000 0.00 0.00 0.00 3.10
1165 1220 2.139118 GCTCTCTCTGTTTTGCGTTCT 58.861 47.619 0.00 0.00 0.00 3.01
1168 1223 2.866156 TCTCTCTGTTTTGCGTTCTGTG 59.134 45.455 0.00 0.00 0.00 3.66
1340 1431 3.934391 GAGTCAGTTGGTCGGCGGG 62.934 68.421 7.21 0.00 0.00 6.13
1391 1486 2.008045 GCAATGGCGTTTCCCGTACTA 61.008 52.381 0.00 0.00 39.32 1.82
1412 1511 2.051345 CACGCAGCGGTTTGGTTC 60.051 61.111 21.15 0.00 0.00 3.62
1432 1531 1.696832 GCATCGGGAGTTCGCTGTTC 61.697 60.000 0.00 0.00 0.00 3.18
1434 1533 3.479269 CGGGAGTTCGCTGTTCGC 61.479 66.667 0.00 0.00 38.27 4.70
1444 1543 2.092291 GCTGTTCGCGATTCCGTCA 61.092 57.895 10.88 2.22 38.24 4.35
1458 1557 1.176527 CCGTCATGCCCTGTTCATTT 58.823 50.000 0.00 0.00 0.00 2.32
1468 1567 1.398451 CCTGTTCATTTGCGTGACGAC 60.398 52.381 10.10 0.00 0.00 4.34
1481 1580 3.439293 CGTGACGACTTTATCTGCTGAT 58.561 45.455 11.14 11.14 36.74 2.90
1482 1581 3.241553 CGTGACGACTTTATCTGCTGATG 59.758 47.826 15.71 2.47 34.32 3.07
1483 1582 4.424626 GTGACGACTTTATCTGCTGATGA 58.575 43.478 15.71 5.16 34.32 2.92
1484 1583 4.864806 GTGACGACTTTATCTGCTGATGAA 59.135 41.667 15.71 12.56 34.32 2.57
1485 1584 5.521735 GTGACGACTTTATCTGCTGATGAAT 59.478 40.000 15.71 4.96 34.32 2.57
1488 1587 5.295292 ACGACTTTATCTGCTGATGAATTGG 59.705 40.000 15.71 11.30 34.32 3.16
1489 1588 5.295292 CGACTTTATCTGCTGATGAATTGGT 59.705 40.000 15.71 8.37 34.32 3.67
1492 1591 3.657398 ATCTGCTGATGAATTGGTCCA 57.343 42.857 5.15 0.00 0.00 4.02
1493 1592 3.657398 TCTGCTGATGAATTGGTCCAT 57.343 42.857 0.00 0.00 0.00 3.41
1494 1593 3.972133 TCTGCTGATGAATTGGTCCATT 58.028 40.909 0.00 0.00 0.00 3.16
1495 1594 3.949754 TCTGCTGATGAATTGGTCCATTC 59.050 43.478 0.00 0.00 0.00 2.67
1496 1595 3.025978 TGCTGATGAATTGGTCCATTCC 58.974 45.455 0.00 0.00 0.00 3.01
1497 1596 3.294214 GCTGATGAATTGGTCCATTCCT 58.706 45.455 0.00 0.00 0.00 3.36
1498 1597 3.067742 GCTGATGAATTGGTCCATTCCTG 59.932 47.826 0.00 0.00 0.00 3.86
1499 1598 3.025978 TGATGAATTGGTCCATTCCTGC 58.974 45.455 0.00 0.00 0.00 4.85
1500 1599 2.905415 TGAATTGGTCCATTCCTGCT 57.095 45.000 0.00 0.00 0.00 4.24
1501 1600 2.449464 TGAATTGGTCCATTCCTGCTG 58.551 47.619 0.00 0.00 0.00 4.41
1502 1601 2.225091 TGAATTGGTCCATTCCTGCTGT 60.225 45.455 0.00 0.00 0.00 4.40
1503 1602 2.134789 ATTGGTCCATTCCTGCTGTC 57.865 50.000 0.00 0.00 0.00 3.51
1504 1603 1.067295 TTGGTCCATTCCTGCTGTCT 58.933 50.000 0.00 0.00 0.00 3.41
1505 1604 0.325933 TGGTCCATTCCTGCTGTCTG 59.674 55.000 0.00 0.00 0.00 3.51
1506 1605 0.393537 GGTCCATTCCTGCTGTCTGG 60.394 60.000 0.00 0.00 0.00 3.86
1507 1606 0.393537 GTCCATTCCTGCTGTCTGGG 60.394 60.000 0.00 0.00 32.70 4.45
1508 1607 0.547471 TCCATTCCTGCTGTCTGGGA 60.547 55.000 0.00 0.00 32.70 4.37
1509 1608 0.329261 CCATTCCTGCTGTCTGGGAA 59.671 55.000 0.00 0.00 42.33 3.97
1510 1609 1.457346 CATTCCTGCTGTCTGGGAAC 58.543 55.000 0.00 0.00 41.18 3.62
1511 1610 1.067295 ATTCCTGCTGTCTGGGAACA 58.933 50.000 0.00 0.00 41.18 3.18
1524 1623 3.737559 TGGGAACAGCCTGAATATGTT 57.262 42.857 0.00 0.00 39.76 2.71
1525 1624 4.853468 TGGGAACAGCCTGAATATGTTA 57.147 40.909 0.00 0.00 37.29 2.41
1526 1625 4.780815 TGGGAACAGCCTGAATATGTTAG 58.219 43.478 0.00 0.00 37.29 2.34
1528 1627 5.193679 GGGAACAGCCTGAATATGTTAGTT 58.806 41.667 0.00 0.00 37.29 2.24
1531 1630 7.338449 GGGAACAGCCTGAATATGTTAGTTAAA 59.662 37.037 0.00 0.00 37.29 1.52
1535 1634 8.903820 ACAGCCTGAATATGTTAGTTAAATTCC 58.096 33.333 0.00 0.00 0.00 3.01
1551 1654 0.401395 TTCCTTGTGACTCACCCCCT 60.401 55.000 6.72 0.00 32.73 4.79
1552 1655 1.127567 TCCTTGTGACTCACCCCCTG 61.128 60.000 6.72 0.00 32.73 4.45
1553 1656 1.376466 CTTGTGACTCACCCCCTGG 59.624 63.158 6.72 0.00 32.73 4.45
1554 1657 2.754664 CTTGTGACTCACCCCCTGGC 62.755 65.000 6.72 0.00 32.73 4.85
1559 1662 4.410400 CTCACCCCCTGGCGGTTC 62.410 72.222 0.00 0.00 33.59 3.62
1563 1666 4.060667 CCCCCTGGCGGTTCCAAT 62.061 66.667 0.00 0.00 46.01 3.16
1567 1670 0.322997 CCCTGGCGGTTCCAATGTTA 60.323 55.000 0.00 0.00 46.01 2.41
1569 1672 1.339631 CCTGGCGGTTCCAATGTTAGA 60.340 52.381 0.00 0.00 46.01 2.10
1570 1673 2.643551 CTGGCGGTTCCAATGTTAGAT 58.356 47.619 0.00 0.00 46.01 1.98
1571 1674 2.355756 CTGGCGGTTCCAATGTTAGATG 59.644 50.000 0.00 0.00 46.01 2.90
1572 1675 1.065551 GGCGGTTCCAATGTTAGATGC 59.934 52.381 0.00 0.00 34.01 3.91
1573 1676 2.017049 GCGGTTCCAATGTTAGATGCT 58.983 47.619 0.00 0.00 0.00 3.79
1575 1678 3.625764 GCGGTTCCAATGTTAGATGCTTA 59.374 43.478 0.00 0.00 0.00 3.09
1576 1679 4.275936 GCGGTTCCAATGTTAGATGCTTAT 59.724 41.667 0.00 0.00 0.00 1.73
1577 1680 5.468746 GCGGTTCCAATGTTAGATGCTTATA 59.531 40.000 0.00 0.00 0.00 0.98
1578 1681 6.149474 GCGGTTCCAATGTTAGATGCTTATAT 59.851 38.462 0.00 0.00 0.00 0.86
1579 1682 7.333423 GCGGTTCCAATGTTAGATGCTTATATA 59.667 37.037 0.00 0.00 0.00 0.86
1580 1683 8.656849 CGGTTCCAATGTTAGATGCTTATATAC 58.343 37.037 0.00 0.00 0.00 1.47
1581 1684 8.656849 GGTTCCAATGTTAGATGCTTATATACG 58.343 37.037 0.00 0.00 0.00 3.06
1582 1685 8.656849 GTTCCAATGTTAGATGCTTATATACGG 58.343 37.037 0.00 0.00 0.00 4.02
1583 1686 6.816640 TCCAATGTTAGATGCTTATATACGGC 59.183 38.462 0.00 1.22 0.00 5.68
1584 1687 6.237835 CCAATGTTAGATGCTTATATACGGCG 60.238 42.308 4.80 4.80 0.00 6.46
1599 1702 1.081242 GGCGTGTCACTTGCATTGG 60.081 57.895 0.65 0.00 0.00 3.16
1607 1710 1.071542 TCACTTGCATTGGGAGTTCGA 59.928 47.619 0.00 0.00 0.00 3.71
1617 1720 3.981071 TGGGAGTTCGATGTTTCTGAT 57.019 42.857 0.00 0.00 0.00 2.90
1618 1721 4.286297 TGGGAGTTCGATGTTTCTGATT 57.714 40.909 0.00 0.00 0.00 2.57
1620 1723 4.020218 TGGGAGTTCGATGTTTCTGATTCT 60.020 41.667 0.00 0.00 0.00 2.40
1634 1737 8.358895 TGTTTCTGATTCTGTTATTCATTTGCA 58.641 29.630 0.00 0.00 0.00 4.08
1637 1740 8.283699 TCTGATTCTGTTATTCATTTGCATCA 57.716 30.769 0.00 0.00 0.00 3.07
1705 1825 1.548081 TGTGATTCACCCAATGGCAG 58.452 50.000 14.05 0.00 32.73 4.85
1712 1832 2.533916 TCACCCAATGGCAGCATTTTA 58.466 42.857 0.00 0.00 33.59 1.52
1720 1840 1.335780 TGGCAGCATTTTACGTGCAAG 60.336 47.619 0.00 0.00 44.87 4.01
1721 1841 1.335872 GGCAGCATTTTACGTGCAAGT 60.336 47.619 10.83 10.83 44.87 3.16
1726 1846 2.724174 GCATTTTACGTGCAAGTGGAAC 59.276 45.455 15.96 0.00 42.08 3.62
1732 1852 2.664851 TGCAAGTGGAACGGCTCG 60.665 61.111 0.00 0.00 45.86 5.03
1733 1853 3.423154 GCAAGTGGAACGGCTCGG 61.423 66.667 0.00 0.00 45.86 4.63
1734 1854 2.030562 CAAGTGGAACGGCTCGGT 59.969 61.111 0.00 0.00 45.86 4.69
1746 1869 1.866925 GCTCGGTTAGCGCTTTGTT 59.133 52.632 18.68 0.00 42.53 2.83
1755 1878 1.300853 GCGCTTTGTTGGTTGCCAT 60.301 52.632 0.00 0.00 31.53 4.40
1777 1900 5.835113 TTTGCATTGGTAGCTTTCTATCC 57.165 39.130 0.00 0.00 0.00 2.59
1779 1902 3.118408 TGCATTGGTAGCTTTCTATCCGT 60.118 43.478 0.00 0.00 0.00 4.69
1786 1909 4.933400 GGTAGCTTTCTATCCGTTTGTTCA 59.067 41.667 0.00 0.00 0.00 3.18
1793 1916 3.666253 CCGTTTGTTCACCCGCCC 61.666 66.667 0.00 0.00 0.00 6.13
1817 1940 3.371965 TCGCCTTTCCTCTATAAGGTGT 58.628 45.455 12.56 0.00 46.92 4.16
1829 1952 9.268282 TCCTCTATAAGGTGTAAAGTTTGAGAT 57.732 33.333 0.00 0.00 46.32 2.75
1917 2040 4.621991 TCTATAGGCGAAATGCTTGAGAC 58.378 43.478 0.00 0.00 45.43 3.36
2011 2138 6.330278 TGACGTATGACTAAAGTTGGAGATG 58.670 40.000 0.00 0.00 0.00 2.90
2040 2167 6.070938 AGTGCTGCATCATATCTGAAGCTATA 60.071 38.462 5.27 0.00 44.45 1.31
2111 2238 9.244799 TGTATCTGCATGTTTATTACTCGTTAG 57.755 33.333 0.00 0.00 0.00 2.34
2248 2376 9.985730 TTTCTCTTCTCGTTTAACTTTATACCA 57.014 29.630 0.00 0.00 0.00 3.25
2273 2407 5.443283 ACCATCTATTCAGTCGTACCTGTA 58.557 41.667 0.00 0.00 34.02 2.74
2327 2461 3.820467 TGGTTTAAGCTGGTCACATCTTG 59.180 43.478 0.00 0.00 34.24 3.02
2483 2619 6.882610 TTAGCACTATTTTATCATGCTGGG 57.117 37.500 7.28 0.00 45.86 4.45
2616 2752 0.745845 CTCCTGAAGGTTCATGGCCG 60.746 60.000 0.00 0.00 36.46 6.13
2622 2758 0.958822 AAGGTTCATGGCCGTTTGAC 59.041 50.000 0.00 0.00 0.00 3.18
2709 2848 8.180267 CACTGGCTTTATTAACTCTGAGAATTG 58.820 37.037 12.44 0.00 0.00 2.32
2892 3031 7.092716 AGCACATATTTGGAAAATGTCAGTTC 58.907 34.615 0.00 0.00 31.60 3.01
2911 3050 5.621228 CAGTTCAAAATCTACACGTGCTTTC 59.379 40.000 17.22 0.00 0.00 2.62
3270 3415 2.316108 GAGAAAAGGGGCCAAAGTTCA 58.684 47.619 4.39 0.00 0.00 3.18
3520 3668 5.532779 CCATATCTAAAGAGGGGTTTGCTTC 59.467 44.000 0.00 0.00 0.00 3.86
3673 3822 5.598830 TGAATCTCCTAATACTGACCAGTCC 59.401 44.000 5.87 0.00 42.54 3.85
3707 3856 3.118038 GCAGATTGTTCCATACCCCTGTA 60.118 47.826 0.00 0.00 0.00 2.74
3708 3857 4.446311 GCAGATTGTTCCATACCCCTGTAT 60.446 45.833 0.00 0.00 38.21 2.29
3709 3858 5.694995 CAGATTGTTCCATACCCCTGTATT 58.305 41.667 0.00 0.00 35.46 1.89
3710 3859 5.532406 CAGATTGTTCCATACCCCTGTATTG 59.468 44.000 0.00 0.00 35.46 1.90
3711 3860 5.431731 AGATTGTTCCATACCCCTGTATTGA 59.568 40.000 0.00 0.00 35.46 2.57
3712 3861 5.522315 TTGTTCCATACCCCTGTATTGAA 57.478 39.130 0.00 0.00 36.99 2.69
3713 3862 5.522315 TGTTCCATACCCCTGTATTGAAA 57.478 39.130 2.06 0.00 39.46 2.69
3714 3863 6.086011 TGTTCCATACCCCTGTATTGAAAT 57.914 37.500 2.06 0.00 39.46 2.17
3715 3864 6.126409 TGTTCCATACCCCTGTATTGAAATC 58.874 40.000 2.06 0.00 39.46 2.17
3716 3865 5.319043 TCCATACCCCTGTATTGAAATCC 57.681 43.478 0.00 0.00 35.46 3.01
3717 3866 4.105697 TCCATACCCCTGTATTGAAATCCC 59.894 45.833 0.00 0.00 35.46 3.85
3718 3867 4.106341 CCATACCCCTGTATTGAAATCCCT 59.894 45.833 0.00 0.00 35.46 4.20
3719 3868 3.669939 ACCCCTGTATTGAAATCCCTG 57.330 47.619 0.00 0.00 0.00 4.45
3906 4055 9.543783 CTAGTGAATATTAAGTTTACCTGACCC 57.456 37.037 0.00 0.00 0.00 4.46
4057 4206 3.056107 TGTGTTATCTCAAGGAAGGGTCG 60.056 47.826 0.00 0.00 0.00 4.79
4277 4426 2.783135 CAATTGGTAGCACACACTCCT 58.217 47.619 0.00 0.00 0.00 3.69
4278 4427 3.868369 GCAATTGGTAGCACACACTCCTA 60.868 47.826 7.72 0.00 0.00 2.94
4283 4432 3.056107 TGGTAGCACACACTCCTATCAAC 60.056 47.826 0.00 0.00 0.00 3.18
4439 4588 2.031333 CAGTGAGTTTTGCTGCCTCTTC 60.031 50.000 0.00 0.00 0.00 2.87
4622 4771 0.453390 GTGATACCTGCTTTGCCTGC 59.547 55.000 0.00 0.00 0.00 4.85
4679 4832 5.468540 AAAGCTTCCCAATTGTACCTTTC 57.531 39.130 0.00 0.00 0.00 2.62
4686 4839 5.806818 TCCCAATTGTACCTTTCGTATCAA 58.193 37.500 4.43 0.00 0.00 2.57
4691 4844 6.642683 ATTGTACCTTTCGTATCAAAGTCG 57.357 37.500 0.00 0.00 32.26 4.18
4716 4869 7.462856 CGTGAAACTTGAAGAGGATATAACACG 60.463 40.741 0.00 0.00 37.92 4.49
4970 5123 8.344831 GCTAAATTTTCAAAATTTTGCTGAGGT 58.655 29.630 30.95 10.26 41.60 3.85
5009 5162 8.001881 TGCAGTTCTGAACCTTAAATAACAAA 57.998 30.769 16.48 0.00 0.00 2.83
5107 5261 2.821969 AGCCCATTGACACACAATTCTC 59.178 45.455 0.00 0.00 45.60 2.87
5209 5364 8.922676 CCACGTACATCCAGACAAATTATATAC 58.077 37.037 0.00 0.00 0.00 1.47
5210 5365 9.692749 CACGTACATCCAGACAAATTATATACT 57.307 33.333 0.00 0.00 0.00 2.12
5211 5366 9.909644 ACGTACATCCAGACAAATTATATACTC 57.090 33.333 0.00 0.00 0.00 2.59
5212 5367 9.355215 CGTACATCCAGACAAATTATATACTCC 57.645 37.037 0.00 0.00 0.00 3.85
5213 5368 9.654663 GTACATCCAGACAAATTATATACTCCC 57.345 37.037 0.00 0.00 0.00 4.30
5214 5369 8.511748 ACATCCAGACAAATTATATACTCCCT 57.488 34.615 0.00 0.00 0.00 4.20
5215 5370 8.598041 ACATCCAGACAAATTATATACTCCCTC 58.402 37.037 0.00 0.00 0.00 4.30
5216 5371 7.554959 TCCAGACAAATTATATACTCCCTCC 57.445 40.000 0.00 0.00 0.00 4.30
5217 5372 6.210784 TCCAGACAAATTATATACTCCCTCCG 59.789 42.308 0.00 0.00 0.00 4.63
5218 5373 6.014499 CCAGACAAATTATATACTCCCTCCGT 60.014 42.308 0.00 0.00 0.00 4.69
5219 5374 7.091443 CAGACAAATTATATACTCCCTCCGTC 58.909 42.308 0.00 0.00 0.00 4.79
5220 5375 6.210984 AGACAAATTATATACTCCCTCCGTCC 59.789 42.308 0.00 0.00 0.00 4.79
5221 5376 5.247792 ACAAATTATATACTCCCTCCGTCCC 59.752 44.000 0.00 0.00 0.00 4.46
5222 5377 4.687262 ATTATATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
5223 5378 4.474303 TTATATACTCCCTCCGTCCCAA 57.526 45.455 0.00 0.00 0.00 4.12
5224 5379 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
5225 5380 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
5226 5381 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5227 5382 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5228 5383 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5229 5384 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5230 5385 2.504175 CTCCCTCCGTCCCAAAATAAGA 59.496 50.000 0.00 0.00 0.00 2.10
5231 5386 2.504175 TCCCTCCGTCCCAAAATAAGAG 59.496 50.000 0.00 0.00 0.00 2.85
5232 5387 2.238898 CCCTCCGTCCCAAAATAAGAGT 59.761 50.000 0.00 0.00 0.00 3.24
5233 5388 3.532542 CCTCCGTCCCAAAATAAGAGTC 58.467 50.000 0.00 0.00 0.00 3.36
5234 5389 3.055385 CCTCCGTCCCAAAATAAGAGTCA 60.055 47.826 0.00 0.00 0.00 3.41
5235 5390 3.933332 CTCCGTCCCAAAATAAGAGTCAC 59.067 47.826 0.00 0.00 0.00 3.67
5236 5391 3.581332 TCCGTCCCAAAATAAGAGTCACT 59.419 43.478 0.00 0.00 0.00 3.41
5237 5392 4.041198 TCCGTCCCAAAATAAGAGTCACTT 59.959 41.667 0.00 0.00 42.04 3.16
5238 5393 5.246656 TCCGTCCCAAAATAAGAGTCACTTA 59.753 40.000 0.00 0.00 43.89 2.24
5249 5404 4.618920 AGAGTCACTTATTTTGGGACGT 57.381 40.909 0.00 0.00 33.84 4.34
5250 5405 5.733620 AGAGTCACTTATTTTGGGACGTA 57.266 39.130 0.00 0.00 33.84 3.57
5251 5406 5.721232 AGAGTCACTTATTTTGGGACGTAG 58.279 41.667 0.00 0.00 33.84 3.51
5252 5407 6.239515 AAGAGTCACTTATTTTGGGACGTAGT 60.240 38.462 0.00 0.00 39.92 2.73
5253 5408 7.039504 AAGAGTCACTTATTTTGGGACGTAGTA 60.040 37.037 0.00 0.00 37.86 1.82
5268 5423 5.511234 ACGTAGTACAAAGTTGAGTCACT 57.489 39.130 0.38 0.00 41.94 3.41
5269 5424 5.899299 ACGTAGTACAAAGTTGAGTCACTT 58.101 37.500 0.38 0.00 41.94 3.16
5270 5425 7.031226 ACGTAGTACAAAGTTGAGTCACTTA 57.969 36.000 0.38 0.00 41.94 2.24
5271 5426 7.655490 ACGTAGTACAAAGTTGAGTCACTTAT 58.345 34.615 0.38 0.00 41.94 1.73
5272 5427 8.139989 ACGTAGTACAAAGTTGAGTCACTTATT 58.860 33.333 0.38 0.00 41.94 1.40
5273 5428 8.975439 CGTAGTACAAAGTTGAGTCACTTATTT 58.025 33.333 0.38 0.00 35.87 1.40
5276 5431 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
5277 5432 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
5278 5433 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
5279 5434 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
5280 5435 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
5281 5436 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
5282 5437 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
5283 5438 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
5284 5439 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5285 5440 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
5286 5441 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5287 5442 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5288 5443 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5289 5444 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5334 5489 3.026630 TGCCAACGTGTCTTTAGAGAG 57.973 47.619 0.00 0.00 31.07 3.20
5368 5523 3.133542 CAGCATGTCCTTGGATCTGTAGA 59.866 47.826 0.00 0.00 0.00 2.59
5378 5533 5.600484 CCTTGGATCTGTAGAGACCAGTATT 59.400 44.000 9.87 0.00 36.42 1.89
5408 5563 8.944029 CAAATAATGTTGATCACACTCTTCTCT 58.056 33.333 0.00 0.00 38.61 3.10
5419 5574 7.352079 TCACACTCTTCTCTTATGCATCATA 57.648 36.000 0.19 0.00 0.00 2.15
5488 5643 5.047235 GTCAGACATGGTTAGACTGGTACTT 60.047 44.000 0.00 0.00 31.30 2.24
5608 5768 6.916360 TTTTGATCTTTTAGGCTGTGGAAT 57.084 33.333 0.00 0.00 0.00 3.01
5612 5772 5.415701 TGATCTTTTAGGCTGTGGAATGTTC 59.584 40.000 0.00 0.00 0.00 3.18
5614 5774 4.761739 TCTTTTAGGCTGTGGAATGTTCTG 59.238 41.667 0.00 0.00 0.00 3.02
5655 5815 9.844790 TCTTAAATGCTATCACTGAAATGTTTG 57.155 29.630 0.00 0.00 0.00 2.93
5656 5816 9.844790 CTTAAATGCTATCACTGAAATGTTTGA 57.155 29.630 0.00 0.00 0.00 2.69
5683 5854 5.009010 GGATGAATTACACATCGAAGGCAAT 59.991 40.000 0.00 0.00 43.24 3.56
5710 5881 4.262678 GGTTCCATACTAGAATCTGAGGCC 60.263 50.000 0.00 0.00 0.00 5.19
5728 5903 2.866762 GGCCACTTTCATACTCTTAGCG 59.133 50.000 0.00 0.00 0.00 4.26
5833 6008 8.974408 CATGCATTCATAATTACACTTTCCATG 58.026 33.333 0.00 0.00 0.00 3.66
5834 6009 7.490840 TGCATTCATAATTACACTTTCCATGG 58.509 34.615 4.97 4.97 0.00 3.66
5863 6038 8.585018 ACTTGGTTTTCATTAACTCCCTTATTG 58.415 33.333 0.00 0.00 0.00 1.90
5911 6086 3.820557 ACAAGTAGTGGACTTTGTGCAT 58.179 40.909 0.00 0.00 46.79 3.96
5947 6122 2.101750 TGTAAGCACCTCTGTTTCGTCA 59.898 45.455 0.00 0.00 0.00 4.35
6155 6330 0.741326 CGGCTGCTACTTCTAGCTCA 59.259 55.000 0.00 0.00 45.20 4.26
6167 6342 3.311167 TCTAGCTCAGAGCAATCTCCT 57.689 47.619 24.64 4.24 45.56 3.69
6195 6373 0.530744 TACCAAGTCGGCTGCTACTG 59.469 55.000 8.55 0.00 39.03 2.74
6284 6469 7.253422 GCTGAAGCAACACATATTACAGATTT 58.747 34.615 0.00 0.00 41.59 2.17
6307 6492 6.739331 TTGAAATCCCACATTGTAAAACCT 57.261 33.333 0.00 0.00 0.00 3.50
6383 6568 3.264845 ATGCCCCAAAGACCCCGT 61.265 61.111 0.00 0.00 0.00 5.28
6456 6641 3.043713 CGAAACAGCAGCGCTCCA 61.044 61.111 7.13 0.00 36.40 3.86
6483 6668 0.890683 GCCACATGGTTCAGAAAGGG 59.109 55.000 0.00 0.00 37.57 3.95
6487 6672 3.009033 CCACATGGTTCAGAAAGGGTCTA 59.991 47.826 0.00 0.00 33.56 2.59
6604 6789 6.605119 AGCCTTTTGTCCAATATACATAGCT 58.395 36.000 0.00 0.00 0.00 3.32
6606 6791 6.263168 GCCTTTTGTCCAATATACATAGCTGT 59.737 38.462 0.00 0.00 39.49 4.40
6607 6792 7.520614 GCCTTTTGTCCAATATACATAGCTGTC 60.521 40.741 0.00 0.00 36.79 3.51
6608 6793 7.307396 CCTTTTGTCCAATATACATAGCTGTCG 60.307 40.741 0.00 0.00 36.79 4.35
6695 6882 7.012989 TGGATCTATCTTGATGAATTGCAACTG 59.987 37.037 0.00 0.00 0.00 3.16
6696 6883 6.127810 TCTATCTTGATGAATTGCAACTGC 57.872 37.500 0.00 0.00 42.50 4.40
6706 6893 1.514678 TTGCAACTGCCGTGGTCATC 61.515 55.000 0.00 0.00 41.18 2.92
6740 6927 6.451064 TTCTACTGATACTCGAAATGCAGA 57.549 37.500 10.73 0.00 0.00 4.26
6781 6975 4.811557 AGGAAAGCTAGCTAGTTAAATGCG 59.188 41.667 19.70 0.00 0.00 4.73
6788 6982 1.202256 GCTAGTTAAATGCGCCCCAAC 60.202 52.381 4.18 3.95 0.00 3.77
6789 6983 2.365582 CTAGTTAAATGCGCCCCAACT 58.634 47.619 4.18 11.64 34.10 3.16
6790 6984 2.500392 AGTTAAATGCGCCCCAACTA 57.500 45.000 4.18 0.00 0.00 2.24
6791 6985 2.365582 AGTTAAATGCGCCCCAACTAG 58.634 47.619 4.18 0.00 0.00 2.57
6795 6989 2.729028 AATGCGCCCCAACTAGTTAT 57.271 45.000 8.04 0.00 0.00 1.89
6935 7133 2.042843 GGCGAAGGAGGAGGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
6939 7137 0.467290 CGAAGGAGGAGGAGGAGGAG 60.467 65.000 0.00 0.00 0.00 3.69
6941 7139 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
6943 7141 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
6944 7142 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
6945 7143 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
6946 7144 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
6947 7145 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
6948 7146 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
6949 7147 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
6950 7148 2.018086 AGGAGGAGGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
6951 7149 2.612251 GAGGAGGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
6952 7150 3.039526 AGGAGGAGGAGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
7010 7208 2.018866 GGCCGAGATCGAAGATGCG 61.019 63.158 3.31 0.00 45.12 4.73
7155 7359 2.380410 GGTGCAGTTGTCGTAGCCG 61.380 63.158 0.00 0.00 0.00 5.52
7239 7448 4.021925 GTGAGGCGGCAGGGAAGT 62.022 66.667 13.08 0.00 0.00 3.01
7275 7495 2.846754 GCTGGAGCTAGGGGAGGG 60.847 72.222 0.00 0.00 38.21 4.30
7276 7496 2.122636 CTGGAGCTAGGGGAGGGG 60.123 72.222 0.00 0.00 0.00 4.79
7277 7497 2.623763 TGGAGCTAGGGGAGGGGA 60.624 66.667 0.00 0.00 0.00 4.81
7278 7498 2.202899 GGAGCTAGGGGAGGGGAG 59.797 72.222 0.00 0.00 0.00 4.30
7279 7499 2.404750 GGAGCTAGGGGAGGGGAGA 61.405 68.421 0.00 0.00 0.00 3.71
7280 7500 1.155155 GAGCTAGGGGAGGGGAGAG 59.845 68.421 0.00 0.00 0.00 3.20
7293 7513 4.890306 GAGAGGGGAGGGGAGGCC 62.890 77.778 0.00 0.00 0.00 5.19
7312 7532 2.028930 GCCGAGGTGAAGAAAAGAGAGA 60.029 50.000 0.00 0.00 0.00 3.10
7313 7533 3.843999 CCGAGGTGAAGAAAAGAGAGAG 58.156 50.000 0.00 0.00 0.00 3.20
7314 7534 3.508012 CCGAGGTGAAGAAAAGAGAGAGA 59.492 47.826 0.00 0.00 0.00 3.10
7317 7537 5.391950 CGAGGTGAAGAAAAGAGAGAGAGAG 60.392 48.000 0.00 0.00 0.00 3.20
7318 7538 5.640147 AGGTGAAGAAAAGAGAGAGAGAGA 58.360 41.667 0.00 0.00 0.00 3.10
7319 7539 5.711976 AGGTGAAGAAAAGAGAGAGAGAGAG 59.288 44.000 0.00 0.00 0.00 3.20
7320 7540 5.710099 GGTGAAGAAAAGAGAGAGAGAGAGA 59.290 44.000 0.00 0.00 0.00 3.10
7321 7541 6.127897 GGTGAAGAAAAGAGAGAGAGAGAGAG 60.128 46.154 0.00 0.00 0.00 3.20
7322 7542 6.655003 GTGAAGAAAAGAGAGAGAGAGAGAGA 59.345 42.308 0.00 0.00 0.00 3.10
7323 7543 6.881065 TGAAGAAAAGAGAGAGAGAGAGAGAG 59.119 42.308 0.00 0.00 0.00 3.20
7337 7557 2.640332 AGAGAGAGGGTGAGGGTTTTTC 59.360 50.000 0.00 0.00 0.00 2.29
7363 7583 0.668535 CATACAGATGAGGTCGCCGA 59.331 55.000 0.00 0.00 34.73 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.745489 GCTTGTAGAACGCCCCTGG 60.745 63.158 0.00 0.00 0.00 4.45
1 2 1.745489 GGCTTGTAGAACGCCCCTG 60.745 63.158 2.81 0.00 37.86 4.45
2 3 2.669240 GGCTTGTAGAACGCCCCT 59.331 61.111 2.81 0.00 37.86 4.79
8 9 5.283457 ACATCATAGAGGGCTTGTAGAAC 57.717 43.478 0.00 0.00 0.00 3.01
24 25 3.274288 GCTCCGGAGAAGAAAACATCAT 58.726 45.455 35.69 0.00 0.00 2.45
25 26 2.699954 GCTCCGGAGAAGAAAACATCA 58.300 47.619 35.69 0.00 0.00 3.07
45 46 4.227538 ACGATCTATGTAGAAAATCGCCG 58.772 43.478 10.01 0.00 36.40 6.46
135 137 4.323553 AAACACAAGAGCTCGTAGAAGT 57.676 40.909 8.37 0.94 34.09 3.01
149 151 7.247728 CAGTAGAGCAAACTTGTTAAACACAA 58.752 34.615 0.00 0.00 43.55 3.33
152 154 6.116806 TCCAGTAGAGCAAACTTGTTAAACA 58.883 36.000 0.00 0.00 0.00 2.83
155 157 8.372459 TCTATTCCAGTAGAGCAAACTTGTTAA 58.628 33.333 0.00 0.00 0.00 2.01
156 158 7.903145 TCTATTCCAGTAGAGCAAACTTGTTA 58.097 34.615 0.00 0.00 0.00 2.41
157 159 6.769512 TCTATTCCAGTAGAGCAAACTTGTT 58.230 36.000 0.00 0.00 0.00 2.83
173 179 3.237746 CTGCCTCTGGATCTCTATTCCA 58.762 50.000 0.00 0.00 40.96 3.53
176 182 2.687297 TGCTGCCTCTGGATCTCTATT 58.313 47.619 0.00 0.00 0.00 1.73
178 184 1.759445 GTTGCTGCCTCTGGATCTCTA 59.241 52.381 0.00 0.00 0.00 2.43
184 190 2.659016 CTCGTTGCTGCCTCTGGA 59.341 61.111 0.00 0.00 0.00 3.86
198 204 0.647410 CATGCCGTGACTAAAGCTCG 59.353 55.000 0.00 0.00 0.00 5.03
222 228 4.240103 TCCCTGCCGCATCCATCG 62.240 66.667 0.00 0.00 0.00 3.84
324 330 8.857098 CCCTTCAAATACATTCTCATGATTCAT 58.143 33.333 0.00 0.00 34.11 2.57
325 331 7.835682 ACCCTTCAAATACATTCTCATGATTCA 59.164 33.333 0.00 0.00 34.11 2.57
326 332 8.230472 ACCCTTCAAATACATTCTCATGATTC 57.770 34.615 0.00 0.00 34.11 2.52
439 448 2.606272 GCTAGTTGTGGTATGCGGTTAC 59.394 50.000 0.00 0.00 0.00 2.50
464 473 7.759433 CCGGACTAGTAGTAAAATAAAAACCGA 59.241 37.037 16.82 0.00 36.05 4.69
477 486 0.475906 GCCTCCCCGGACTAGTAGTA 59.524 60.000 0.73 0.00 33.16 1.82
479 488 1.897615 CGCCTCCCCGGACTAGTAG 60.898 68.421 0.73 0.00 33.16 2.57
501 512 2.837291 CTCTGCCTCTCCCTCCGG 60.837 72.222 0.00 0.00 0.00 5.14
512 523 1.144936 CGGTTCTGATCCCTCTGCC 59.855 63.158 0.00 0.00 0.00 4.85
519 532 0.458025 GTCGTGGACGGTTCTGATCC 60.458 60.000 0.00 0.00 40.29 3.36
520 533 0.242825 TGTCGTGGACGGTTCTGATC 59.757 55.000 0.00 0.00 40.29 2.92
547 560 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
555 568 2.412591 CCCCTCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
557 570 1.522900 CCCCCTCTCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
753 769 1.152652 GATGCGGAGGAGGAGGAGA 60.153 63.158 0.00 0.00 0.00 3.71
875 909 3.430862 GCGACTGCGGCAATTCCA 61.431 61.111 3.44 0.00 38.16 3.53
953 987 1.723608 CCTGCGTCAACCAGCAAACA 61.724 55.000 0.00 0.00 43.31 2.83
1130 1176 4.285790 AGCAGGGGAAGTGGGGGA 62.286 66.667 0.00 0.00 0.00 4.81
1132 1178 2.612115 AGAGCAGGGGAAGTGGGG 60.612 66.667 0.00 0.00 0.00 4.96
1133 1179 1.614824 AGAGAGCAGGGGAAGTGGG 60.615 63.158 0.00 0.00 0.00 4.61
1134 1180 0.617249 AGAGAGAGCAGGGGAAGTGG 60.617 60.000 0.00 0.00 0.00 4.00
1136 1182 0.116143 ACAGAGAGAGCAGGGGAAGT 59.884 55.000 0.00 0.00 0.00 3.01
1138 1184 1.734655 AAACAGAGAGAGCAGGGGAA 58.265 50.000 0.00 0.00 0.00 3.97
1153 1208 4.680349 CGCACAGAACGCAAAACA 57.320 50.000 0.00 0.00 0.00 2.83
1175 1230 3.814268 TGCCGTACCGTACCGAGC 61.814 66.667 3.04 4.88 0.00 5.03
1178 1233 4.834892 CCGTGCCGTACCGTACCG 62.835 72.222 3.04 1.23 0.00 4.02
1181 1236 4.418401 GTGCCGTGCCGTACCGTA 62.418 66.667 0.00 0.00 0.00 4.02
1294 1355 2.375766 CGGGCGAGCGAATCTATGC 61.376 63.158 0.00 0.00 0.00 3.14
1295 1356 2.375766 GCGGGCGAGCGAATCTATG 61.376 63.158 0.00 0.00 0.00 2.23
1317 1378 0.663568 CCGACCAACTGACTCGTCAC 60.664 60.000 0.00 0.00 35.46 3.67
1321 1382 2.805353 CGCCGACCAACTGACTCG 60.805 66.667 0.00 0.00 0.00 4.18
1340 1431 1.029947 AACGGGAATTCATCGCACCC 61.030 55.000 16.76 3.66 40.89 4.61
1391 1486 2.972505 CAAACCGCTGCGTGGAGT 60.973 61.111 21.59 8.60 36.58 3.85
1412 1511 3.257561 CAGCGAACTCCCGATGCG 61.258 66.667 0.00 0.00 39.09 4.73
1432 1531 3.640000 GGGCATGACGGAATCGCG 61.640 66.667 0.00 0.00 40.63 5.87
1434 1533 0.744414 AACAGGGCATGACGGAATCG 60.744 55.000 5.99 0.00 43.02 3.34
1444 1543 0.244450 CACGCAAATGAACAGGGCAT 59.756 50.000 0.00 0.00 0.00 4.40
1458 1557 1.067846 AGCAGATAAAGTCGTCACGCA 60.068 47.619 0.00 0.00 0.00 5.24
1468 1567 5.591472 TGGACCAATTCATCAGCAGATAAAG 59.409 40.000 0.00 0.00 31.88 1.85
1481 1580 2.225091 ACAGCAGGAATGGACCAATTCA 60.225 45.455 0.00 0.00 38.14 2.57
1482 1581 2.424956 GACAGCAGGAATGGACCAATTC 59.575 50.000 0.00 3.28 36.08 2.17
1483 1582 2.042162 AGACAGCAGGAATGGACCAATT 59.958 45.455 0.00 0.00 0.00 2.32
1484 1583 1.637553 AGACAGCAGGAATGGACCAAT 59.362 47.619 0.00 0.00 0.00 3.16
1485 1584 1.067295 AGACAGCAGGAATGGACCAA 58.933 50.000 0.00 0.00 0.00 3.67
1488 1587 0.393537 CCCAGACAGCAGGAATGGAC 60.394 60.000 0.00 0.00 32.55 4.02
1489 1588 0.547471 TCCCAGACAGCAGGAATGGA 60.547 55.000 0.00 0.00 32.55 3.41
1492 1591 1.004044 CTGTTCCCAGACAGCAGGAAT 59.996 52.381 0.00 0.00 41.53 3.01
1493 1592 0.397941 CTGTTCCCAGACAGCAGGAA 59.602 55.000 0.00 0.00 41.50 3.36
1494 1593 2.061220 CTGTTCCCAGACAGCAGGA 58.939 57.895 0.00 0.00 41.50 3.86
1495 1594 4.709840 CTGTTCCCAGACAGCAGG 57.290 61.111 0.00 0.00 41.50 4.85
1502 1601 2.846206 ACATATTCAGGCTGTTCCCAGA 59.154 45.455 15.27 0.00 41.50 3.86
1503 1602 3.287867 ACATATTCAGGCTGTTCCCAG 57.712 47.619 15.27 4.41 41.91 4.45
1504 1603 3.737559 AACATATTCAGGCTGTTCCCA 57.262 42.857 15.27 0.00 34.51 4.37
1505 1604 4.781934 ACTAACATATTCAGGCTGTTCCC 58.218 43.478 15.27 0.00 35.00 3.97
1506 1605 7.859325 TTAACTAACATATTCAGGCTGTTCC 57.141 36.000 15.27 0.00 35.00 3.62
1509 1608 8.903820 GGAATTTAACTAACATATTCAGGCTGT 58.096 33.333 15.27 0.00 0.00 4.40
1510 1609 9.125026 AGGAATTTAACTAACATATTCAGGCTG 57.875 33.333 8.58 8.58 0.00 4.85
1511 1610 9.700831 AAGGAATTTAACTAACATATTCAGGCT 57.299 29.630 0.00 0.00 0.00 4.58
1512 1611 9.736023 CAAGGAATTTAACTAACATATTCAGGC 57.264 33.333 0.00 0.00 0.00 4.85
1520 1619 8.784043 GTGAGTCACAAGGAATTTAACTAACAT 58.216 33.333 18.54 0.00 34.08 2.71
1521 1620 7.227910 GGTGAGTCACAAGGAATTTAACTAACA 59.772 37.037 24.20 0.00 35.86 2.41
1522 1621 7.308408 GGGTGAGTCACAAGGAATTTAACTAAC 60.308 40.741 24.20 1.08 35.86 2.34
1523 1622 6.713450 GGGTGAGTCACAAGGAATTTAACTAA 59.287 38.462 24.20 0.00 35.86 2.24
1524 1623 6.235664 GGGTGAGTCACAAGGAATTTAACTA 58.764 40.000 24.20 0.00 35.86 2.24
1525 1624 5.070685 GGGTGAGTCACAAGGAATTTAACT 58.929 41.667 24.20 0.00 35.86 2.24
1526 1625 4.217767 GGGGTGAGTCACAAGGAATTTAAC 59.782 45.833 24.20 2.69 35.86 2.01
1528 1627 3.245122 GGGGGTGAGTCACAAGGAATTTA 60.245 47.826 24.20 0.00 35.86 1.40
1531 1630 0.698818 GGGGGTGAGTCACAAGGAAT 59.301 55.000 24.20 0.00 35.86 3.01
1533 1632 1.127567 CAGGGGGTGAGTCACAAGGA 61.128 60.000 24.20 0.00 35.86 3.36
1535 1634 1.376466 CCAGGGGGTGAGTCACAAG 59.624 63.158 24.20 8.75 35.86 3.16
1552 1655 1.065551 GCATCTAACATTGGAACCGCC 59.934 52.381 0.00 0.00 37.10 6.13
1553 1656 2.017049 AGCATCTAACATTGGAACCGC 58.983 47.619 0.00 0.00 0.00 5.68
1554 1657 7.672983 ATATAAGCATCTAACATTGGAACCG 57.327 36.000 0.00 0.00 0.00 4.44
1556 1659 8.656849 CCGTATATAAGCATCTAACATTGGAAC 58.343 37.037 0.00 0.00 0.00 3.62
1558 1661 6.816640 GCCGTATATAAGCATCTAACATTGGA 59.183 38.462 1.96 0.00 0.00 3.53
1559 1662 6.237835 CGCCGTATATAAGCATCTAACATTGG 60.238 42.308 6.78 0.00 0.00 3.16
1560 1663 6.310467 ACGCCGTATATAAGCATCTAACATTG 59.690 38.462 0.00 0.00 0.00 2.82
1561 1664 6.310467 CACGCCGTATATAAGCATCTAACATT 59.690 38.462 0.00 0.00 0.00 2.71
1562 1665 5.805486 CACGCCGTATATAAGCATCTAACAT 59.195 40.000 0.00 0.00 0.00 2.71
1563 1666 5.158494 CACGCCGTATATAAGCATCTAACA 58.842 41.667 0.00 0.00 0.00 2.41
1567 1670 3.254903 TGACACGCCGTATATAAGCATCT 59.745 43.478 0.00 0.00 0.00 2.90
1569 1672 3.005472 AGTGACACGCCGTATATAAGCAT 59.995 43.478 0.00 0.00 0.00 3.79
1570 1673 2.359848 AGTGACACGCCGTATATAAGCA 59.640 45.455 0.00 0.00 0.00 3.91
1571 1674 3.009301 AGTGACACGCCGTATATAAGC 57.991 47.619 0.00 0.00 0.00 3.09
1572 1675 3.181774 GCAAGTGACACGCCGTATATAAG 59.818 47.826 0.00 0.00 0.00 1.73
1573 1676 3.117794 GCAAGTGACACGCCGTATATAA 58.882 45.455 0.00 0.00 0.00 0.98
1575 1678 1.134936 TGCAAGTGACACGCCGTATAT 60.135 47.619 0.00 0.00 0.00 0.86
1576 1679 0.244178 TGCAAGTGACACGCCGTATA 59.756 50.000 0.00 0.00 0.00 1.47
1577 1680 0.391130 ATGCAAGTGACACGCCGTAT 60.391 50.000 0.00 0.00 0.00 3.06
1578 1681 0.601576 AATGCAAGTGACACGCCGTA 60.602 50.000 0.00 0.00 0.00 4.02
1579 1682 1.891919 AATGCAAGTGACACGCCGT 60.892 52.632 0.00 0.00 0.00 5.68
1580 1683 1.440850 CAATGCAAGTGACACGCCG 60.441 57.895 0.00 0.00 30.28 6.46
1581 1684 1.081242 CCAATGCAAGTGACACGCC 60.081 57.895 0.00 0.00 30.28 5.68
1582 1685 1.081242 CCCAATGCAAGTGACACGC 60.081 57.895 0.00 0.00 30.28 5.34
1583 1686 0.518636 CTCCCAATGCAAGTGACACG 59.481 55.000 0.00 0.00 30.28 4.49
1584 1687 1.609208 ACTCCCAATGCAAGTGACAC 58.391 50.000 0.00 0.00 30.28 3.67
1599 1702 4.932200 ACAGAATCAGAAACATCGAACTCC 59.068 41.667 0.00 0.00 0.00 3.85
1607 1710 9.362539 GCAAATGAATAACAGAATCAGAAACAT 57.637 29.630 0.00 0.00 0.00 2.71
1617 1720 7.828712 TCACATGATGCAAATGAATAACAGAA 58.171 30.769 17.10 0.00 0.00 3.02
1618 1721 7.393841 TCACATGATGCAAATGAATAACAGA 57.606 32.000 17.10 3.67 0.00 3.41
1620 1723 8.874816 CAAATCACATGATGCAAATGAATAACA 58.125 29.630 17.10 0.00 34.49 2.41
1634 1737 5.191426 CAGGAAGAGACCAAATCACATGAT 58.809 41.667 0.00 0.00 36.07 2.45
1637 1740 4.647564 ACAGGAAGAGACCAAATCACAT 57.352 40.909 0.00 0.00 0.00 3.21
1677 1796 5.350504 TTGGGTGAATCACAACAACATTT 57.649 34.783 15.86 0.00 38.06 2.32
1680 1799 3.069300 CCATTGGGTGAATCACAACAACA 59.931 43.478 19.69 7.19 42.62 3.33
1687 1806 0.174162 GCTGCCATTGGGTGAATCAC 59.826 55.000 4.51 4.51 36.17 3.06
1688 1807 0.251698 TGCTGCCATTGGGTGAATCA 60.252 50.000 4.53 0.00 36.17 2.57
1689 1808 1.117150 ATGCTGCCATTGGGTGAATC 58.883 50.000 4.53 0.00 36.17 2.52
1705 1825 2.697431 TCCACTTGCACGTAAAATGC 57.303 45.000 0.00 0.00 43.68 3.56
1712 1832 3.276846 GCCGTTCCACTTGCACGT 61.277 61.111 0.00 0.00 31.83 4.49
1720 1840 2.098831 GCTAACCGAGCCGTTCCAC 61.099 63.158 0.00 0.00 46.41 4.02
1721 1841 2.263540 GCTAACCGAGCCGTTCCA 59.736 61.111 0.00 0.00 46.41 3.53
1732 1852 1.766069 CAACCAACAAAGCGCTAACC 58.234 50.000 12.05 0.00 0.00 2.85
1733 1853 1.128513 GCAACCAACAAAGCGCTAAC 58.871 50.000 12.05 0.00 0.00 2.34
1734 1854 0.031449 GGCAACCAACAAAGCGCTAA 59.969 50.000 12.05 0.00 0.00 3.09
1755 1878 4.335315 CGGATAGAAAGCTACCAATGCAAA 59.665 41.667 0.00 0.00 0.00 3.68
1777 1900 1.801309 ATTGGGCGGGTGAACAAACG 61.801 55.000 0.00 0.00 0.00 3.60
1779 1902 1.519751 CGATTGGGCGGGTGAACAAA 61.520 55.000 0.00 0.00 0.00 2.83
1817 1940 4.319190 CGACAAACCGCATCTCAAACTTTA 60.319 41.667 0.00 0.00 0.00 1.85
1829 1952 3.959975 GCAAGCCGACAAACCGCA 61.960 61.111 0.00 0.00 0.00 5.69
1908 2031 1.333619 GAAAAACCGCTGTCTCAAGCA 59.666 47.619 0.00 0.00 43.73 3.91
1917 2040 2.016165 GCAAGCCGAAAAACCGCTG 61.016 57.895 0.00 0.00 0.00 5.18
2011 2138 5.131594 TCAGATATGATGCAGCACTCTAC 57.868 43.478 6.89 0.00 0.00 2.59
2040 2167 5.122396 GCAAACAACTCTTATCCTCGACAAT 59.878 40.000 0.00 0.00 0.00 2.71
2091 2218 6.816640 AGCTTCTAACGAGTAATAAACATGCA 59.183 34.615 0.00 0.00 0.00 3.96
2111 2238 0.536006 ACAGGTGCCAAGTCAGCTTC 60.536 55.000 0.00 0.00 42.26 3.86
2152 2280 0.806868 CGTTCATCAAGCTGTGGCAT 59.193 50.000 0.00 0.00 41.70 4.40
2248 2376 6.069331 ACAGGTACGACTGAATAGATGGTAT 58.931 40.000 12.09 0.00 40.97 2.73
2472 2608 3.138098 TGTATGAAAGCCCCAGCATGATA 59.862 43.478 0.00 0.00 43.56 2.15
2473 2609 2.091720 TGTATGAAAGCCCCAGCATGAT 60.092 45.455 0.00 0.00 43.56 2.45
2474 2610 1.284491 TGTATGAAAGCCCCAGCATGA 59.716 47.619 0.00 0.00 43.56 3.07
2475 2611 1.679680 CTGTATGAAAGCCCCAGCATG 59.320 52.381 0.00 0.00 43.56 4.06
2476 2612 1.285962 ACTGTATGAAAGCCCCAGCAT 59.714 47.619 0.00 0.00 43.56 3.79
2477 2613 0.698238 ACTGTATGAAAGCCCCAGCA 59.302 50.000 0.00 0.00 43.56 4.41
2478 2614 2.710096 TACTGTATGAAAGCCCCAGC 57.290 50.000 0.00 0.00 40.32 4.85
2479 2615 3.885297 CCAATACTGTATGAAAGCCCCAG 59.115 47.826 0.22 0.00 0.00 4.45
2480 2616 3.525609 TCCAATACTGTATGAAAGCCCCA 59.474 43.478 0.22 0.00 0.00 4.96
2482 2618 5.009010 CACATCCAATACTGTATGAAAGCCC 59.991 44.000 0.22 0.00 0.00 5.19
2483 2619 5.590259 ACACATCCAATACTGTATGAAAGCC 59.410 40.000 0.22 0.00 0.00 4.35
2616 2752 5.728637 AAAATCCAATGAGGGAGTCAAAC 57.271 39.130 0.00 0.00 41.08 2.93
2653 2792 8.513774 ACATTTTGTTGTTGAAGCAATCTTTTT 58.486 25.926 0.00 0.00 31.48 1.94
2709 2848 7.584987 ACAACTAGTCAATGCTACAAATGTTC 58.415 34.615 0.00 0.00 0.00 3.18
3146 3290 4.979943 TCAAACATGTCAGTTTCAAGCA 57.020 36.364 0.00 0.00 39.55 3.91
3270 3415 7.557719 CCAAATTATACTCTCCAACATTCCAGT 59.442 37.037 0.00 0.00 0.00 4.00
3466 3614 0.681175 GCCCACAATCCAAGCAGTTT 59.319 50.000 0.00 0.00 0.00 2.66
3502 3650 5.728637 ATTTGAAGCAAACCCCTCTTTAG 57.271 39.130 0.00 0.00 36.13 1.85
3520 3668 8.542132 CACTTTCTTAACAACATCACCAATTTG 58.458 33.333 0.00 0.00 0.00 2.32
3584 3733 2.115291 GCAGAAACTCCATCCGCCC 61.115 63.158 0.00 0.00 0.00 6.13
3586 3735 1.372087 CCTGCAGAAACTCCATCCGC 61.372 60.000 17.39 0.00 0.00 5.54
3673 3822 5.239306 TGGAACAATCTGCAGTCTGTTTTAG 59.761 40.000 26.07 8.36 32.31 1.85
3707 3856 7.775093 TCTCGTATTTCAATCAGGGATTTCAAT 59.225 33.333 0.00 0.00 28.87 2.57
3708 3857 7.109501 TCTCGTATTTCAATCAGGGATTTCAA 58.890 34.615 0.00 0.00 28.87 2.69
3709 3858 6.649155 TCTCGTATTTCAATCAGGGATTTCA 58.351 36.000 0.00 0.00 28.87 2.69
3710 3859 7.065803 TGTTCTCGTATTTCAATCAGGGATTTC 59.934 37.037 0.00 0.00 28.87 2.17
3711 3860 6.884295 TGTTCTCGTATTTCAATCAGGGATTT 59.116 34.615 0.00 0.00 28.87 2.17
3712 3861 6.414732 TGTTCTCGTATTTCAATCAGGGATT 58.585 36.000 0.00 0.00 31.86 3.01
3713 3862 5.989477 TGTTCTCGTATTTCAATCAGGGAT 58.011 37.500 0.00 0.00 0.00 3.85
3714 3863 5.414789 TGTTCTCGTATTTCAATCAGGGA 57.585 39.130 0.00 0.00 0.00 4.20
3715 3864 7.875041 AGATATGTTCTCGTATTTCAATCAGGG 59.125 37.037 0.00 0.00 0.00 4.45
3716 3865 8.706936 CAGATATGTTCTCGTATTTCAATCAGG 58.293 37.037 0.00 0.00 29.93 3.86
3717 3866 8.219769 GCAGATATGTTCTCGTATTTCAATCAG 58.780 37.037 0.00 0.00 29.93 2.90
3718 3867 7.710475 TGCAGATATGTTCTCGTATTTCAATCA 59.290 33.333 0.00 0.00 29.93 2.57
3719 3868 8.076714 TGCAGATATGTTCTCGTATTTCAATC 57.923 34.615 0.00 0.00 29.93 2.67
3777 3926 1.070914 TGCAAGTAACATGACGGACCA 59.929 47.619 0.00 0.00 0.00 4.02
4057 4206 5.291905 AGATAGTTACAACTGGCATACCC 57.708 43.478 4.86 0.00 40.07 3.69
4100 4249 7.663905 TGAGTTAGGAAAACATAAGCTAGCAAA 59.336 33.333 18.83 4.27 0.00 3.68
4101 4250 7.165485 TGAGTTAGGAAAACATAAGCTAGCAA 58.835 34.615 18.83 4.69 0.00 3.91
4472 4621 4.012374 CCAACAGTAATGCAATCCTGAGT 58.988 43.478 14.51 2.39 31.73 3.41
4586 4735 4.657436 ATCACGATAAGTCTCAACCCTC 57.343 45.455 0.00 0.00 0.00 4.30
4679 4832 5.570262 TCAAGTTTCACGACTTTGATACG 57.430 39.130 0.00 0.00 37.76 3.06
4686 4839 4.402056 TCCTCTTCAAGTTTCACGACTT 57.598 40.909 0.00 0.00 40.37 3.01
4691 4844 7.544566 TCGTGTTATATCCTCTTCAAGTTTCAC 59.455 37.037 0.00 0.00 0.00 3.18
4970 5123 6.988522 TCAGAACTGCAAACATACTACAGTA 58.011 36.000 0.00 0.00 40.55 2.74
4971 5124 5.853936 TCAGAACTGCAAACATACTACAGT 58.146 37.500 0.00 0.00 43.14 3.55
5009 5162 7.859325 ATCCTTAACACAAACTATTGCGTAT 57.141 32.000 0.00 0.00 40.34 3.06
5107 5261 6.401394 TCAAGAGACAACATAACATCTCAGG 58.599 40.000 3.18 0.00 40.10 3.86
5209 5364 2.504175 TCTTATTTTGGGACGGAGGGAG 59.496 50.000 0.00 0.00 0.00 4.30
5210 5365 2.504175 CTCTTATTTTGGGACGGAGGGA 59.496 50.000 0.00 0.00 0.00 4.20
5211 5366 2.238898 ACTCTTATTTTGGGACGGAGGG 59.761 50.000 0.00 0.00 0.00 4.30
5212 5367 3.055385 TGACTCTTATTTTGGGACGGAGG 60.055 47.826 0.00 0.00 0.00 4.30
5213 5368 3.933332 GTGACTCTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
5214 5369 3.581332 AGTGACTCTTATTTTGGGACGGA 59.419 43.478 0.00 0.00 0.00 4.69
5215 5370 3.939066 AGTGACTCTTATTTTGGGACGG 58.061 45.455 0.00 0.00 0.00 4.79
5226 5381 6.105397 ACGTCCCAAAATAAGTGACTCTTA 57.895 37.500 0.00 0.00 41.98 2.10
5227 5382 4.969484 ACGTCCCAAAATAAGTGACTCTT 58.031 39.130 0.00 0.00 39.89 2.85
5228 5383 4.618920 ACGTCCCAAAATAAGTGACTCT 57.381 40.909 0.00 0.00 0.00 3.24
5229 5384 5.476614 ACTACGTCCCAAAATAAGTGACTC 58.523 41.667 0.00 0.00 0.00 3.36
5230 5385 5.479124 ACTACGTCCCAAAATAAGTGACT 57.521 39.130 0.00 0.00 0.00 3.41
5231 5386 6.158598 TGTACTACGTCCCAAAATAAGTGAC 58.841 40.000 0.00 0.00 0.00 3.67
5232 5387 6.343716 TGTACTACGTCCCAAAATAAGTGA 57.656 37.500 0.00 0.00 0.00 3.41
5233 5388 7.172019 ACTTTGTACTACGTCCCAAAATAAGTG 59.828 37.037 0.00 0.00 0.00 3.16
5234 5389 7.219322 ACTTTGTACTACGTCCCAAAATAAGT 58.781 34.615 0.00 0.00 0.00 2.24
5235 5390 7.662604 ACTTTGTACTACGTCCCAAAATAAG 57.337 36.000 0.00 0.00 0.00 1.73
5236 5391 7.714377 TCAACTTTGTACTACGTCCCAAAATAA 59.286 33.333 0.00 0.00 0.00 1.40
5237 5392 7.215789 TCAACTTTGTACTACGTCCCAAAATA 58.784 34.615 0.00 0.00 0.00 1.40
5238 5393 6.056884 TCAACTTTGTACTACGTCCCAAAAT 58.943 36.000 0.00 0.00 0.00 1.82
5239 5394 5.426504 TCAACTTTGTACTACGTCCCAAAA 58.573 37.500 0.00 0.00 0.00 2.44
5240 5395 5.021033 TCAACTTTGTACTACGTCCCAAA 57.979 39.130 0.00 0.00 0.00 3.28
5241 5396 4.099881 ACTCAACTTTGTACTACGTCCCAA 59.900 41.667 0.00 0.00 0.00 4.12
5242 5397 3.638160 ACTCAACTTTGTACTACGTCCCA 59.362 43.478 0.00 0.00 0.00 4.37
5243 5398 4.233005 GACTCAACTTTGTACTACGTCCC 58.767 47.826 0.00 0.00 0.00 4.46
5244 5399 4.678742 GTGACTCAACTTTGTACTACGTCC 59.321 45.833 0.00 0.00 0.00 4.79
5245 5400 5.517904 AGTGACTCAACTTTGTACTACGTC 58.482 41.667 0.00 0.00 0.00 4.34
5246 5401 5.511234 AGTGACTCAACTTTGTACTACGT 57.489 39.130 0.00 0.00 0.00 3.57
5247 5402 8.516811 AATAAGTGACTCAACTTTGTACTACG 57.483 34.615 0.00 0.00 40.77 3.51
5250 5405 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
5251 5406 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
5252 5407 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
5253 5408 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
5254 5409 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
5255 5410 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
5256 5411 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
5257 5412 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
5258 5413 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
5259 5414 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5260 5415 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
5261 5416 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
5262 5417 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
5263 5418 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
5264 5419 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
5265 5420 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5266 5421 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5267 5422 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5268 5423 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5269 5424 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5270 5425 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
5271 5426 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5272 5427 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
5273 5428 0.613853 CTGTACTCCCTCCGTCCCAA 60.614 60.000 0.00 0.00 0.00 4.12
5274 5429 1.000019 CTGTACTCCCTCCGTCCCA 60.000 63.158 0.00 0.00 0.00 4.37
5275 5430 0.257039 TACTGTACTCCCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
5276 5431 1.064832 AGTACTGTACTCCCTCCGTCC 60.065 57.143 14.53 0.00 32.47 4.79
5277 5432 2.416680 AGTACTGTACTCCCTCCGTC 57.583 55.000 14.53 0.00 32.47 4.79
5278 5433 4.307032 TTTAGTACTGTACTCCCTCCGT 57.693 45.455 22.79 0.86 40.14 4.69
5279 5434 5.848833 AATTTAGTACTGTACTCCCTCCG 57.151 43.478 22.79 0.00 40.14 4.63
5280 5435 7.179076 TCAAATTTAGTACTGTACTCCCTCC 57.821 40.000 22.79 0.00 40.14 4.30
5281 5436 9.668497 AATTCAAATTTAGTACTGTACTCCCTC 57.332 33.333 22.79 0.00 40.14 4.30
5282 5437 9.449719 CAATTCAAATTTAGTACTGTACTCCCT 57.550 33.333 22.79 6.95 40.14 4.20
5283 5438 8.674607 CCAATTCAAATTTAGTACTGTACTCCC 58.325 37.037 22.79 0.00 40.14 4.30
5284 5439 9.444600 TCCAATTCAAATTTAGTACTGTACTCC 57.555 33.333 22.79 0.00 40.14 3.85
5320 5475 8.690680 AAATAACTAAGCTCTCTAAAGACACG 57.309 34.615 0.00 0.00 0.00 4.49
5334 5489 6.261118 CAAGGACATGCTGAAATAACTAAGC 58.739 40.000 0.00 0.00 36.18 3.09
5368 5523 7.176515 TCAACATTATTTGTGCAATACTGGTCT 59.823 33.333 0.00 0.00 38.99 3.85
5378 5533 6.207221 AGAGTGTGATCAACATTATTTGTGCA 59.793 34.615 0.00 0.00 41.97 4.57
5419 5574 8.664669 AAATCTAACCCCTTAACAATCACAAT 57.335 30.769 0.00 0.00 0.00 2.71
5431 5586 5.823861 AAATGCACAAAATCTAACCCCTT 57.176 34.783 0.00 0.00 0.00 3.95
5461 5616 3.589988 CAGTCTAACCATGTCTGACACC 58.410 50.000 13.50 0.00 0.00 4.16
5488 5643 1.024271 GTTGCAACTGAGCTTCCACA 58.976 50.000 22.36 0.00 34.99 4.17
5577 5737 5.047731 AGCCTAAAAGATCAAAAACTCTGGC 60.048 40.000 0.00 0.00 34.90 4.85
5608 5768 5.547465 AGATGACGTGGATAAAACAGAACA 58.453 37.500 0.00 0.00 0.00 3.18
5612 5772 7.429340 GCATTTAAGATGACGTGGATAAAACAG 59.571 37.037 0.00 0.00 0.00 3.16
5614 5774 7.472543 AGCATTTAAGATGACGTGGATAAAAC 58.527 34.615 0.00 0.00 0.00 2.43
5654 5814 5.195001 TCGATGTGTAATTCATCCGATCA 57.805 39.130 0.00 0.00 38.60 2.92
5655 5815 5.119279 CCTTCGATGTGTAATTCATCCGATC 59.881 44.000 0.00 0.00 38.60 3.69
5656 5816 4.991056 CCTTCGATGTGTAATTCATCCGAT 59.009 41.667 0.00 0.00 38.60 4.18
5657 5817 4.368315 CCTTCGATGTGTAATTCATCCGA 58.632 43.478 0.00 0.00 38.60 4.55
5683 5854 7.235079 CCTCAGATTCTAGTATGGAACCTCTA 58.765 42.308 0.00 0.00 38.82 2.43
5710 5881 4.177026 AGCACGCTAAGAGTATGAAAGTG 58.823 43.478 0.00 0.00 0.00 3.16
5728 5903 5.409520 TCAGATCACATGACAAAAGTAGCAC 59.590 40.000 0.00 0.00 0.00 4.40
5772 5947 2.675032 GCTCATCAATCAGGTCACACGA 60.675 50.000 0.00 0.00 0.00 4.35
5773 5948 1.662629 GCTCATCAATCAGGTCACACG 59.337 52.381 0.00 0.00 0.00 4.49
5833 6008 4.473199 GAGTTAATGAAAACCAAGTCGCC 58.527 43.478 0.00 0.00 0.00 5.54
5834 6009 4.473199 GGAGTTAATGAAAACCAAGTCGC 58.527 43.478 0.00 0.00 0.00 5.19
5863 6038 2.555199 GACATGCAGTCCCTGTCATAC 58.445 52.381 11.58 0.00 41.56 2.39
5911 6086 5.065988 GGTGCTTACAGTCTTCAACTTTTCA 59.934 40.000 0.00 0.00 35.45 2.69
6004 6179 4.953940 AGACTATCCTCCTGCAGATTTC 57.046 45.455 17.39 1.49 0.00 2.17
6140 6315 8.122633 GAGATTGCTCTGAGCTAGAAGTAGCA 62.123 46.154 28.04 4.10 44.49 3.49
6155 6330 0.108424 GCGTGACAGGAGATTGCTCT 60.108 55.000 0.00 0.00 41.06 4.09
6195 6373 1.220817 GCAGATTGCTCCGAGCTAGC 61.221 60.000 20.87 16.12 42.97 3.42
6215 6393 0.802607 GCATCTCTTCGTCGGTGACC 60.803 60.000 0.00 0.00 0.00 4.02
6222 6400 2.586357 GGGCCGCATCTCTTCGTC 60.586 66.667 0.00 0.00 0.00 4.20
6284 6469 6.325028 TCAGGTTTTACAATGTGGGATTTCAA 59.675 34.615 0.00 0.00 0.00 2.69
6483 6668 7.921214 TCTGATTTTGTCTATCACCGATTAGAC 59.079 37.037 3.69 3.69 39.35 2.59
6487 6672 7.386299 GCTATCTGATTTTGTCTATCACCGATT 59.614 37.037 0.00 0.00 0.00 3.34
6604 6789 1.052617 TCCACCAACCAAGATCGACA 58.947 50.000 0.00 0.00 0.00 4.35
6606 6791 3.181455 CCATATCCACCAACCAAGATCGA 60.181 47.826 0.00 0.00 0.00 3.59
6607 6792 3.141398 CCATATCCACCAACCAAGATCG 58.859 50.000 0.00 0.00 0.00 3.69
6608 6793 3.117512 ACCCATATCCACCAACCAAGATC 60.118 47.826 0.00 0.00 0.00 2.75
6666 6853 8.296211 TGCAATTCATCAAGATAGATCCAAAA 57.704 30.769 0.00 0.00 0.00 2.44
6706 6893 7.173390 TCGAGTATCAGTAGAATGTACTCATGG 59.827 40.741 10.37 0.00 40.62 3.66
6740 6927 4.415881 TCCTGATGTAATGTAACCGCAT 57.584 40.909 0.00 0.00 0.00 4.73
6781 6975 8.647256 TCTAATCTAGTATAACTAGTTGGGGC 57.353 38.462 18.56 5.88 46.31 5.80
6789 6983 9.703892 GACGTGGTCTCTAATCTAGTATAACTA 57.296 37.037 0.00 0.00 0.00 2.24
6790 6984 8.431222 AGACGTGGTCTCTAATCTAGTATAACT 58.569 37.037 0.00 0.00 38.71 2.24
6791 6985 8.606040 AGACGTGGTCTCTAATCTAGTATAAC 57.394 38.462 0.00 0.00 38.71 1.89
6812 7006 1.291184 TGCAGCAATTGACCGAGACG 61.291 55.000 10.34 0.00 0.00 4.18
6825 7019 2.896044 CCTAGGAGTATCATCTGCAGCA 59.104 50.000 9.47 0.00 36.25 4.41
6920 7118 0.467290 CTCCTCCTCCTCCTCCTTCG 60.467 65.000 0.00 0.00 0.00 3.79
6929 7127 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
6935 7133 3.039526 CCCCCTCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
7010 7208 3.310860 AAGGTCGCCATCACCGTCC 62.311 63.158 0.00 0.00 39.13 4.79
7239 7448 4.446455 CCAGCTCCACCAGATCTACTACTA 60.446 50.000 0.00 0.00 0.00 1.82
7269 7489 4.179599 CCTCCCCTCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
7270 7490 4.179599 CCCTCCCCTCTCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
7271 7491 4.179599 CCCCTCCCCTCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
7272 7492 4.761304 TCCCCTCCCCTCTCCCCT 62.761 72.222 0.00 0.00 0.00 4.79
7273 7493 4.179599 CTCCCCTCCCCTCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
7274 7494 4.179599 CCTCCCCTCCCCTCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
7275 7495 4.890306 GCCTCCCCTCCCCTCTCC 62.890 77.778 0.00 0.00 0.00 3.71
7276 7496 4.890306 GGCCTCCCCTCCCCTCTC 62.890 77.778 0.00 0.00 0.00 3.20
7293 7513 4.457603 TCTCTCTCTCTTTTCTTCACCTCG 59.542 45.833 0.00 0.00 0.00 4.63
7312 7532 0.926293 CCCTCACCCTCTCTCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
7313 7533 0.629058 ACCCTCACCCTCTCTCTCTC 59.371 60.000 0.00 0.00 0.00 3.20
7314 7534 1.089123 AACCCTCACCCTCTCTCTCT 58.911 55.000 0.00 0.00 0.00 3.10
7317 7537 2.640332 AGAAAAACCCTCACCCTCTCTC 59.360 50.000 0.00 0.00 0.00 3.20
7318 7538 2.707554 AGAAAAACCCTCACCCTCTCT 58.292 47.619 0.00 0.00 0.00 3.10
7319 7539 3.510531 AAGAAAAACCCTCACCCTCTC 57.489 47.619 0.00 0.00 0.00 3.20
7320 7540 3.566351 CAAAGAAAAACCCTCACCCTCT 58.434 45.455 0.00 0.00 0.00 3.69
7321 7541 2.628178 CCAAAGAAAAACCCTCACCCTC 59.372 50.000 0.00 0.00 0.00 4.30
7322 7542 2.677914 CCAAAGAAAAACCCTCACCCT 58.322 47.619 0.00 0.00 0.00 4.34
7323 7543 1.691976 CCCAAAGAAAAACCCTCACCC 59.308 52.381 0.00 0.00 0.00 4.61
7337 7557 3.209410 GACCTCATCTGTATGCCCAAAG 58.791 50.000 0.00 0.00 32.76 2.77
7363 7583 0.320697 GCCAACCAGACCTTCTACGT 59.679 55.000 0.00 0.00 0.00 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.