Multiple sequence alignment - TraesCS5D01G369100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G369100 chr5D 100.000 2672 0 0 1 2672 444726654 444729325 0.000000e+00 4935.0
1 TraesCS5D01G369100 chr5B 88.015 2161 124 54 560 2672 541615798 541617871 0.000000e+00 2431.0
2 TraesCS5D01G369100 chr5B 88.528 462 40 6 3 451 541614466 541614927 5.030000e-152 547.0
3 TraesCS5D01G369100 chr5B 97.297 37 1 0 446 482 541615718 541615754 2.220000e-06 63.9
4 TraesCS5D01G369100 chr5A 91.485 1468 84 23 1213 2672 561660054 561661488 0.000000e+00 1980.0
5 TraesCS5D01G369100 chr5A 90.541 1184 61 20 3 1177 561658912 561660053 0.000000e+00 1519.0
6 TraesCS5D01G369100 chr4A 80.469 256 30 9 2 255 736890219 736889982 7.600000e-41 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G369100 chr5D 444726654 444729325 2671 False 4935.000000 4935 100.000 1 2672 1 chr5D.!!$F1 2671
1 TraesCS5D01G369100 chr5B 541614466 541617871 3405 False 1013.966667 2431 91.280 3 2672 3 chr5B.!!$F1 2669
2 TraesCS5D01G369100 chr5A 561658912 561661488 2576 False 1749.500000 1980 91.013 3 2672 2 chr5A.!!$F1 2669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 1470 0.034756 TTGCTTAGCACAGAAGGCGA 59.965 50.0 6.34 0.00 38.71 5.54 F
794 1612 0.248825 CTCGGACGAATCTGCAGGAG 60.249 60.0 15.13 5.92 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 2436 0.105709 GAAGGAGGAGGAGGAGGAGG 60.106 65.0 0.00 0.0 0.00 4.30 R
2325 3202 0.530744 TACCAAGTCGGCTGCTACTG 59.469 55.0 8.55 0.0 39.03 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 5.044558 GGAAATAAGCTCTAGTTGTCGGAG 58.955 45.833 0.00 0.00 0.00 4.63
57 58 0.524392 CTCTAGTTGTCGGAGCGCTG 60.524 60.000 18.48 0.00 0.00 5.18
115 116 2.215196 TGAGCACCACCGAACTTTTAC 58.785 47.619 0.00 0.00 0.00 2.01
135 136 1.115326 GGAAGTTGGTGCAAAGGCCT 61.115 55.000 0.00 0.00 40.13 5.19
266 270 3.372954 CCACGTCCTCGAATCTTATGTC 58.627 50.000 0.00 0.00 40.62 3.06
277 281 7.872993 CCTCGAATCTTATGTCTAATGCCTTTA 59.127 37.037 0.00 0.00 0.00 1.85
301 305 2.151202 GTTGCAAGGTCGAGGATTTGA 58.849 47.619 0.00 0.00 0.00 2.69
304 308 2.014068 GCAAGGTCGAGGATTTGAGGG 61.014 57.143 0.00 0.00 0.00 4.30
375 389 2.378038 GGCCATGTTTGATAGAAGGCA 58.622 47.619 0.00 0.00 42.26 4.75
415 429 2.093447 GGAATCGCAAAGAGGAAGAGGA 60.093 50.000 0.00 0.00 0.00 3.71
492 1303 6.013466 TCAGCCAGCACCATTATGAGAATATA 60.013 38.462 0.00 0.00 0.00 0.86
524 1336 3.146066 CTCTAGAGCTTCACGCCTCTAT 58.854 50.000 6.86 0.00 40.39 1.98
534 1346 3.206964 TCACGCCTCTATCAGTCTACTG 58.793 50.000 3.64 3.64 45.08 2.74
538 1350 2.288152 GCCTCTATCAGTCTACTGCTGC 60.288 54.545 5.21 0.00 43.46 5.25
540 1352 3.221771 CTCTATCAGTCTACTGCTGCCT 58.778 50.000 5.21 0.00 43.46 4.75
542 1354 4.026744 TCTATCAGTCTACTGCTGCCTTT 58.973 43.478 5.21 0.00 43.46 3.11
543 1355 2.751166 TCAGTCTACTGCTGCCTTTC 57.249 50.000 5.21 0.00 43.46 2.62
544 1356 1.276421 TCAGTCTACTGCTGCCTTTCC 59.724 52.381 5.21 0.00 43.46 3.13
545 1357 1.277557 CAGTCTACTGCTGCCTTTCCT 59.722 52.381 0.00 0.00 37.15 3.36
546 1358 1.277557 AGTCTACTGCTGCCTTTCCTG 59.722 52.381 0.00 0.00 0.00 3.86
547 1359 1.002544 GTCTACTGCTGCCTTTCCTGT 59.997 52.381 0.00 0.00 0.00 4.00
548 1360 2.233922 GTCTACTGCTGCCTTTCCTGTA 59.766 50.000 0.00 0.00 0.00 2.74
549 1361 2.903784 TCTACTGCTGCCTTTCCTGTAA 59.096 45.455 0.00 0.00 0.00 2.41
593 1405 0.179097 CCCTCCTAGAGTGCGCTTTC 60.179 60.000 9.73 6.26 0.00 2.62
658 1470 0.034756 TTGCTTAGCACAGAAGGCGA 59.965 50.000 6.34 0.00 38.71 5.54
794 1612 0.248825 CTCGGACGAATCTGCAGGAG 60.249 60.000 15.13 5.92 0.00 3.69
806 1626 1.462670 CTGCAGGAGAAAAACTCGCTC 59.537 52.381 5.57 0.00 45.76 5.03
811 1631 1.127029 GGAGAAAAACTCGCTCGCTTC 59.873 52.381 0.00 0.00 45.76 3.86
843 1663 2.125912 AGGAGTGGGCCAGGATGT 59.874 61.111 6.40 0.00 0.00 3.06
845 1665 2.300967 GGAGTGGGCCAGGATGTCA 61.301 63.158 6.40 0.00 0.00 3.58
846 1666 1.639635 GGAGTGGGCCAGGATGTCAT 61.640 60.000 6.40 0.00 0.00 3.06
847 1667 0.465097 GAGTGGGCCAGGATGTCATG 60.465 60.000 6.40 0.00 0.00 3.07
848 1668 1.210204 AGTGGGCCAGGATGTCATGT 61.210 55.000 6.40 0.00 0.00 3.21
849 1669 1.033746 GTGGGCCAGGATGTCATGTG 61.034 60.000 6.40 0.00 0.00 3.21
905 1725 6.202762 CGAGCAATTTACTTATATGCCACTGA 59.797 38.462 0.00 0.00 37.73 3.41
960 1780 1.594194 CTCACTCTGCTCGCCACTCT 61.594 60.000 0.00 0.00 0.00 3.24
982 1802 2.172505 CCTCCTCTGCTCACTCTCTCTA 59.827 54.545 0.00 0.00 0.00 2.43
1023 1850 4.704833 TCCAGGGCGCTGTTGCTC 62.705 66.667 26.94 0.00 36.97 4.26
1157 1984 0.320697 GCCAACCAGACCTTCTACGT 59.679 55.000 0.00 0.00 0.00 3.57
1183 2010 3.209410 GACCTCATCTGTATGCCCAAAG 58.791 50.000 0.00 0.00 32.76 2.77
1197 2024 1.691976 CCCAAAGAAAAACCCTCACCC 59.308 52.381 0.00 0.00 0.00 4.61
1198 2025 2.677914 CCAAAGAAAAACCCTCACCCT 58.322 47.619 0.00 0.00 0.00 4.34
1199 2026 2.628178 CCAAAGAAAAACCCTCACCCTC 59.372 50.000 0.00 0.00 0.00 4.30
1200 2027 3.566351 CAAAGAAAAACCCTCACCCTCT 58.434 45.455 0.00 0.00 0.00 3.69
1202 2029 2.707554 AGAAAAACCCTCACCCTCTCT 58.292 47.619 0.00 0.00 0.00 3.10
1203 2030 2.640332 AGAAAAACCCTCACCCTCTCTC 59.360 50.000 0.00 0.00 0.00 3.20
1204 2031 2.424684 AAAACCCTCACCCTCTCTCT 57.575 50.000 0.00 0.00 0.00 3.10
1205 2032 1.945580 AAACCCTCACCCTCTCTCTC 58.054 55.000 0.00 0.00 0.00 3.20
1206 2033 1.089123 AACCCTCACCCTCTCTCTCT 58.911 55.000 0.00 0.00 0.00 3.10
1207 2034 0.629058 ACCCTCACCCTCTCTCTCTC 59.371 60.000 0.00 0.00 0.00 3.20
1208 2035 0.926293 CCCTCACCCTCTCTCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
1227 2054 4.457603 TCTCTCTCTCTTTTCTTCACCTCG 59.542 45.833 0.00 0.00 0.00 4.63
1244 2071 4.890306 GGCCTCCCCTCCCCTCTC 62.890 77.778 0.00 0.00 0.00 3.20
1245 2072 4.890306 GCCTCCCCTCCCCTCTCC 62.890 77.778 0.00 0.00 0.00 3.71
1246 2073 4.179599 CCTCCCCTCCCCTCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1247 2074 4.179599 CTCCCCTCCCCTCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
1248 2075 4.761304 TCCCCTCCCCTCTCCCCT 62.761 72.222 0.00 0.00 0.00 4.79
1249 2076 4.179599 CCCCTCCCCTCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1250 2077 4.179599 CCCTCCCCTCTCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
1251 2078 4.179599 CCTCCCCTCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1281 2108 4.446455 CCAGCTCCACCAGATCTACTACTA 60.446 50.000 0.00 0.00 0.00 1.82
1510 2366 3.310860 AAGGTCGCCATCACCGTCC 62.311 63.158 0.00 0.00 39.13 4.79
1585 2441 3.039526 CCCCCTCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
1591 2447 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1600 2456 0.467290 CTCCTCCTCCTCCTCCTTCG 60.467 65.000 0.00 0.00 0.00 3.79
1695 2555 2.896044 CCTAGGAGTATCATCTGCAGCA 59.104 50.000 9.47 0.00 36.25 4.41
1708 2568 1.291184 TGCAGCAATTGACCGAGACG 61.291 55.000 10.34 0.00 0.00 4.18
1729 2589 8.606040 AGACGTGGTCTCTAATCTAGTATAAC 57.394 38.462 0.00 0.00 38.71 1.89
1730 2590 8.431222 AGACGTGGTCTCTAATCTAGTATAACT 58.569 37.037 0.00 0.00 38.71 2.24
1731 2591 9.703892 GACGTGGTCTCTAATCTAGTATAACTA 57.296 37.037 0.00 0.00 0.00 2.24
1739 2599 8.647256 TCTAATCTAGTATAACTAGTTGGGGC 57.353 38.462 18.56 5.88 46.31 5.80
1814 2681 7.173390 TCGAGTATCAGTAGAATGTACTCATGG 59.827 40.741 10.37 0.00 40.62 3.66
1854 2721 8.296211 TGCAATTCATCAAGATAGATCCAAAA 57.704 30.769 0.00 0.00 0.00 2.44
1912 2782 3.117512 ACCCATATCCACCAACCAAGATC 60.118 47.826 0.00 0.00 0.00 2.75
1913 2783 3.141398 CCATATCCACCAACCAAGATCG 58.859 50.000 0.00 0.00 0.00 3.69
1914 2784 3.181455 CCATATCCACCAACCAAGATCGA 60.181 47.826 0.00 0.00 0.00 3.59
1915 2785 2.403252 ATCCACCAACCAAGATCGAC 57.597 50.000 0.00 0.00 0.00 4.20
1916 2786 1.052617 TCCACCAACCAAGATCGACA 58.947 50.000 0.00 0.00 0.00 4.35
2033 2903 7.386299 GCTATCTGATTTTGTCTATCACCGATT 59.614 37.037 0.00 0.00 0.00 3.34
2037 2907 7.921214 TCTGATTTTGTCTATCACCGATTAGAC 59.079 37.037 3.69 3.69 39.35 2.59
2236 3106 6.325028 TCAGGTTTTACAATGTGGGATTTCAA 59.675 34.615 0.00 0.00 0.00 2.69
2298 3175 2.586357 GGGCCGCATCTCTTCGTC 60.586 66.667 0.00 0.00 0.00 4.20
2305 3182 0.802607 GCATCTCTTCGTCGGTGACC 60.803 60.000 0.00 0.00 0.00 4.02
2325 3202 1.220817 GCAGATTGCTCCGAGCTAGC 61.221 60.000 20.87 16.12 42.97 3.42
2365 3245 0.108424 GCGTGACAGGAGATTGCTCT 60.108 55.000 0.00 0.00 41.06 4.09
2380 3260 8.122633 GAGATTGCTCTGAGCTAGAAGTAGCA 62.123 46.154 28.04 4.10 44.49 3.49
2516 3396 4.953940 AGACTATCCTCCTGCAGATTTC 57.046 45.455 17.39 1.49 0.00 2.17
2609 3489 5.065988 GGTGCTTACAGTCTTCAACTTTTCA 59.934 40.000 0.00 0.00 35.45 2.69
2657 3537 2.555199 GACATGCAGTCCCTGTCATAC 58.445 52.381 11.58 0.00 41.56 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.963338 GGCATATCCTCCACAGCGC 60.963 63.158 0.00 0.00 0.00 5.92
57 58 0.693049 ATTCGGGGCATATCCTCCAC 59.307 55.000 0.00 0.00 34.39 4.02
115 116 1.007387 GCCTTTGCACCAACTTCCG 60.007 57.895 0.00 0.00 37.47 4.30
135 136 0.179004 AAGGGTTTGGCGATGTGACA 60.179 50.000 0.00 0.00 0.00 3.58
266 270 5.648092 ACCTTGCAACTAGTAAAGGCATTAG 59.352 40.000 22.68 13.59 42.49 1.73
277 281 1.629043 TCCTCGACCTTGCAACTAGT 58.371 50.000 0.00 0.00 0.00 2.57
301 305 0.909610 TTGCGATTGACCCTCTCCCT 60.910 55.000 0.00 0.00 0.00 4.20
304 308 1.092345 GCCTTGCGATTGACCCTCTC 61.092 60.000 0.00 0.00 0.00 3.20
415 429 3.192633 GGATTGGATTGCCACGTTACTTT 59.807 43.478 0.00 0.00 45.94 2.66
513 1324 3.206964 CAGTAGACTGATAGAGGCGTGA 58.793 50.000 3.45 0.00 46.59 4.35
514 1325 2.287308 GCAGTAGACTGATAGAGGCGTG 60.287 54.545 13.87 0.00 46.59 5.34
524 1336 1.276421 GGAAAGGCAGCAGTAGACTGA 59.724 52.381 13.87 0.00 46.59 3.41
534 1346 4.725790 ATGAAATTACAGGAAAGGCAGC 57.274 40.909 0.00 0.00 0.00 5.25
658 1470 4.379243 CCTCTTGCGCTCCGTGGT 62.379 66.667 9.73 0.00 0.00 4.16
688 1503 1.178534 CGGTGGGGCAGTTCAAACAT 61.179 55.000 0.00 0.00 0.00 2.71
733 1551 4.524318 ATCCCTACGCGCCAACCG 62.524 66.667 5.73 0.00 40.75 4.44
778 1596 2.386661 TTTCTCCTGCAGATTCGTCC 57.613 50.000 17.39 0.00 0.00 4.79
794 1612 1.136224 CAGGAAGCGAGCGAGTTTTTC 60.136 52.381 0.00 0.00 0.00 2.29
843 1663 1.005037 GGTGGTCTCGTGCACATGA 60.005 57.895 18.64 11.11 0.00 3.07
845 1665 0.036732 ATTGGTGGTCTCGTGCACAT 59.963 50.000 18.64 0.00 0.00 3.21
846 1666 0.884259 CATTGGTGGTCTCGTGCACA 60.884 55.000 18.64 3.15 0.00 4.57
847 1667 0.602638 TCATTGGTGGTCTCGTGCAC 60.603 55.000 6.82 6.82 0.00 4.57
848 1668 0.320683 CTCATTGGTGGTCTCGTGCA 60.321 55.000 0.00 0.00 0.00 4.57
849 1669 0.320771 ACTCATTGGTGGTCTCGTGC 60.321 55.000 0.00 0.00 0.00 5.34
960 1780 0.998928 AGAGAGTGAGCAGAGGAGGA 59.001 55.000 0.00 0.00 0.00 3.71
982 1802 1.207570 CATTGCTCAGCTCTCACCTCT 59.792 52.381 0.00 0.00 0.00 3.69
1157 1984 0.668535 CATACAGATGAGGTCGCCGA 59.331 55.000 0.00 0.00 34.73 5.54
1183 2010 2.640332 AGAGAGAGGGTGAGGGTTTTTC 59.360 50.000 0.00 0.00 0.00 2.29
1197 2024 6.881065 TGAAGAAAAGAGAGAGAGAGAGAGAG 59.119 42.308 0.00 0.00 0.00 3.20
1198 2025 6.655003 GTGAAGAAAAGAGAGAGAGAGAGAGA 59.345 42.308 0.00 0.00 0.00 3.10
1199 2026 6.127897 GGTGAAGAAAAGAGAGAGAGAGAGAG 60.128 46.154 0.00 0.00 0.00 3.20
1200 2027 5.710099 GGTGAAGAAAAGAGAGAGAGAGAGA 59.290 44.000 0.00 0.00 0.00 3.10
1202 2029 5.640147 AGGTGAAGAAAAGAGAGAGAGAGA 58.360 41.667 0.00 0.00 0.00 3.10
1203 2030 5.391950 CGAGGTGAAGAAAAGAGAGAGAGAG 60.392 48.000 0.00 0.00 0.00 3.20
1204 2031 4.457603 CGAGGTGAAGAAAAGAGAGAGAGA 59.542 45.833 0.00 0.00 0.00 3.10
1205 2032 4.380444 CCGAGGTGAAGAAAAGAGAGAGAG 60.380 50.000 0.00 0.00 0.00 3.20
1206 2033 3.508012 CCGAGGTGAAGAAAAGAGAGAGA 59.492 47.826 0.00 0.00 0.00 3.10
1207 2034 3.843999 CCGAGGTGAAGAAAAGAGAGAG 58.156 50.000 0.00 0.00 0.00 3.20
1208 2035 2.028930 GCCGAGGTGAAGAAAAGAGAGA 60.029 50.000 0.00 0.00 0.00 3.10
1227 2054 4.890306 GAGAGGGGAGGGGAGGCC 62.890 77.778 0.00 0.00 0.00 5.19
1240 2067 1.155155 GAGCTAGGGGAGGGGAGAG 59.845 68.421 0.00 0.00 0.00 3.20
1241 2068 2.404750 GGAGCTAGGGGAGGGGAGA 61.405 68.421 0.00 0.00 0.00 3.71
1242 2069 2.202899 GGAGCTAGGGGAGGGGAG 59.797 72.222 0.00 0.00 0.00 4.30
1243 2070 2.623763 TGGAGCTAGGGGAGGGGA 60.624 66.667 0.00 0.00 0.00 4.81
1244 2071 2.122636 CTGGAGCTAGGGGAGGGG 60.123 72.222 0.00 0.00 0.00 4.79
1245 2072 2.846754 GCTGGAGCTAGGGGAGGG 60.847 72.222 0.00 0.00 38.21 4.30
1281 2108 4.021925 GTGAGGCGGCAGGGAAGT 62.022 66.667 13.08 0.00 0.00 3.01
1365 2215 2.380410 GGTGCAGTTGTCGTAGCCG 61.380 63.158 0.00 0.00 0.00 5.52
1510 2366 2.018866 GGCCGAGATCGAAGATGCG 61.019 63.158 3.31 0.00 45.12 4.73
1569 2425 2.612251 GAGGAGGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
1570 2426 2.018086 AGGAGGAGGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
1571 2427 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1572 2428 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1573 2429 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1574 2430 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1575 2431 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1576 2432 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1577 2433 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1578 2434 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1579 2435 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
1580 2436 0.105709 GAAGGAGGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
1581 2437 0.467290 CGAAGGAGGAGGAGGAGGAG 60.467 65.000 0.00 0.00 0.00 3.69
1585 2441 2.042843 GGCGAAGGAGGAGGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
1725 2585 2.729028 AATGCGCCCCAACTAGTTAT 57.271 45.000 8.04 0.00 0.00 1.89
1729 2589 2.365582 AGTTAAATGCGCCCCAACTAG 58.634 47.619 4.18 0.00 0.00 2.57
1730 2590 2.500392 AGTTAAATGCGCCCCAACTA 57.500 45.000 4.18 0.00 0.00 2.24
1731 2591 2.365582 CTAGTTAAATGCGCCCCAACT 58.634 47.619 4.18 11.64 34.10 3.16
1732 2592 1.202256 GCTAGTTAAATGCGCCCCAAC 60.202 52.381 4.18 3.95 0.00 3.77
1739 2599 4.811557 AGGAAAGCTAGCTAGTTAAATGCG 59.188 41.667 19.70 0.00 0.00 4.73
1814 2681 1.514678 TTGCAACTGCCGTGGTCATC 61.515 55.000 0.00 0.00 41.18 2.92
1824 2691 6.127810 TCTATCTTGATGAATTGCAACTGC 57.872 37.500 0.00 0.00 42.50 4.40
1825 2692 7.012989 TGGATCTATCTTGATGAATTGCAACTG 59.987 37.037 0.00 0.00 0.00 3.16
1912 2782 7.307396 CCTTTTGTCCAATATACATAGCTGTCG 60.307 40.741 0.00 0.00 36.79 4.35
1913 2783 7.520614 GCCTTTTGTCCAATATACATAGCTGTC 60.521 40.741 0.00 0.00 36.79 3.51
1914 2784 6.263168 GCCTTTTGTCCAATATACATAGCTGT 59.737 38.462 0.00 0.00 39.49 4.40
1915 2785 6.488006 AGCCTTTTGTCCAATATACATAGCTG 59.512 38.462 0.00 0.00 0.00 4.24
1916 2786 6.605119 AGCCTTTTGTCCAATATACATAGCT 58.395 36.000 0.00 0.00 0.00 3.32
2033 2903 3.009033 CCACATGGTTCAGAAAGGGTCTA 59.991 47.826 0.00 0.00 33.56 2.59
2037 2907 0.890683 GCCACATGGTTCAGAAAGGG 59.109 55.000 0.00 0.00 37.57 3.95
2064 2934 3.043713 CGAAACAGCAGCGCTCCA 61.044 61.111 7.13 0.00 36.40 3.86
2137 3007 3.264845 ATGCCCCAAAGACCCCGT 61.265 61.111 0.00 0.00 0.00 5.28
2213 3083 6.739331 TTGAAATCCCACATTGTAAAACCT 57.261 33.333 0.00 0.00 0.00 3.50
2236 3106 7.253422 GCTGAAGCAACACATATTACAGATTT 58.747 34.615 0.00 0.00 41.59 2.17
2325 3202 0.530744 TACCAAGTCGGCTGCTACTG 59.469 55.000 8.55 0.00 39.03 2.74
2353 3233 3.311167 TCTAGCTCAGAGCAATCTCCT 57.689 47.619 24.64 4.24 45.56 3.69
2365 3245 0.741326 CGGCTGCTACTTCTAGCTCA 59.259 55.000 0.00 0.00 45.20 4.26
2573 3453 2.101750 TGTAAGCACCTCTGTTTCGTCA 59.898 45.455 0.00 0.00 0.00 4.35
2609 3489 3.820557 ACAAGTAGTGGACTTTGTGCAT 58.179 40.909 0.00 0.00 46.79 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.