Multiple sequence alignment - TraesCS5D01G368000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G368000 chr5D 100.000 5134 0 0 1 5134 444170022 444164889 0.000000e+00 9481
1 TraesCS5D01G368000 chr5D 96.833 4294 73 13 443 4731 156745273 156741038 0.000000e+00 7118
2 TraesCS5D01G368000 chr5D 97.506 3969 58 15 1 3962 473105671 473109605 0.000000e+00 6743
3 TraesCS5D01G368000 chr5D 96.568 1486 17 7 1 1484 38207238 38205785 0.000000e+00 2431
4 TraesCS5D01G368000 chr5D 99.267 409 3 0 4726 5134 295534203 295533795 0.000000e+00 739
5 TraesCS5D01G368000 chr1D 97.738 4730 44 11 1 4725 318144758 318140087 0.000000e+00 8083
6 TraesCS5D01G368000 chr1D 97.111 4638 51 22 126 4727 485442855 485447445 0.000000e+00 7745
7 TraesCS5D01G368000 chr1D 100.000 406 0 0 4729 5134 479243816 479243411 0.000000e+00 750
8 TraesCS5D01G368000 chr1D 99.755 408 1 0 4727 5134 443889138 443888731 0.000000e+00 749
9 TraesCS5D01G368000 chr1D 99.511 409 2 0 4726 5134 444170351 444169943 0.000000e+00 745
10 TraesCS5D01G368000 chr1D 99.510 408 2 0 4727 5134 479256311 479255904 0.000000e+00 743
11 TraesCS5D01G368000 chr2D 97.709 4715 53 11 1 4698 2315936 2320612 0.000000e+00 8058
12 TraesCS5D01G368000 chr2D 97.421 4730 41 10 1 4727 360462469 360457818 0.000000e+00 7984
13 TraesCS5D01G368000 chr2D 99.755 408 1 0 4727 5134 638955567 638955974 0.000000e+00 749
14 TraesCS5D01G368000 chr2D 99.755 408 1 0 4727 5134 638967877 638968284 0.000000e+00 749
15 TraesCS5D01G368000 chr4D 97.762 4603 57 15 1 4593 61998373 61993807 0.000000e+00 7888
16 TraesCS5D01G368000 chr4D 96.713 4289 53 19 443 4727 41941583 41945787 0.000000e+00 7059
17 TraesCS5D01G368000 chr4D 97.220 4136 58 17 1 4128 481106575 481102489 0.000000e+00 6948
18 TraesCS5D01G368000 chr4D 95.805 1454 22 5 3276 4727 7009706 7011122 0.000000e+00 2311
19 TraesCS5D01G368000 chr3D 98.070 4352 53 8 379 4725 367355992 367351667 0.000000e+00 7542
20 TraesCS5D01G368000 chr3D 96.711 4287 59 20 443 4725 94454210 94450002 0.000000e+00 7060
21 TraesCS5D01G368000 chr3D 98.203 3784 37 9 443 4222 405849743 405845987 0.000000e+00 6582
22 TraesCS5D01G368000 chr3D 98.375 2215 18 6 1 2213 135159982 135157784 0.000000e+00 3875
23 TraesCS5D01G368000 chr3D 92.936 2265 121 23 2471 4727 506887346 506885113 0.000000e+00 3260
24 TraesCS5D01G368000 chr3D 91.837 98 7 1 530 626 30791960 30791863 8.970000e-28 135
25 TraesCS5D01G368000 chr6D 97.392 4294 67 11 443 4731 18607865 18603612 0.000000e+00 7267
26 TraesCS5D01G368000 chr6D 97.335 1801 33 5 2932 4731 400562209 400560423 0.000000e+00 3046
27 TraesCS5D01G368000 chr7D 97.123 4136 53 14 1 4128 78254252 78258329 0.000000e+00 6918
28 TraesCS5D01G368000 chr7D 95.216 857 27 4 3876 4731 428974118 428974961 0.000000e+00 1343
29 TraesCS5D01G368000 chr7D 99.755 408 1 0 4727 5134 98828489 98828082 0.000000e+00 749
30 TraesCS5D01G368000 chr7D 99.510 408 2 0 4727 5134 98841003 98840596 0.000000e+00 743
31 TraesCS5D01G368000 chrUn 97.384 3631 41 10 1 3609 30211327 30207729 0.000000e+00 6130
32 TraesCS5D01G368000 chr4A 94.608 3561 145 22 585 4128 616591804 616588274 0.000000e+00 5469
33 TraesCS5D01G368000 chr4A 93.340 3213 168 20 951 4128 618207487 618204286 0.000000e+00 4706


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G368000 chr5D 444164889 444170022 5133 True 9481 9481 100.000 1 5134 1 chr5D.!!$R4 5133
1 TraesCS5D01G368000 chr5D 156741038 156745273 4235 True 7118 7118 96.833 443 4731 1 chr5D.!!$R2 4288
2 TraesCS5D01G368000 chr5D 473105671 473109605 3934 False 6743 6743 97.506 1 3962 1 chr5D.!!$F1 3961
3 TraesCS5D01G368000 chr5D 38205785 38207238 1453 True 2431 2431 96.568 1 1484 1 chr5D.!!$R1 1483
4 TraesCS5D01G368000 chr1D 318140087 318144758 4671 True 8083 8083 97.738 1 4725 1 chr1D.!!$R1 4724
5 TraesCS5D01G368000 chr1D 485442855 485447445 4590 False 7745 7745 97.111 126 4727 1 chr1D.!!$F1 4601
6 TraesCS5D01G368000 chr2D 2315936 2320612 4676 False 8058 8058 97.709 1 4698 1 chr2D.!!$F1 4697
7 TraesCS5D01G368000 chr2D 360457818 360462469 4651 True 7984 7984 97.421 1 4727 1 chr2D.!!$R1 4726
8 TraesCS5D01G368000 chr4D 61993807 61998373 4566 True 7888 7888 97.762 1 4593 1 chr4D.!!$R1 4592
9 TraesCS5D01G368000 chr4D 41941583 41945787 4204 False 7059 7059 96.713 443 4727 1 chr4D.!!$F2 4284
10 TraesCS5D01G368000 chr4D 481102489 481106575 4086 True 6948 6948 97.220 1 4128 1 chr4D.!!$R2 4127
11 TraesCS5D01G368000 chr4D 7009706 7011122 1416 False 2311 2311 95.805 3276 4727 1 chr4D.!!$F1 1451
12 TraesCS5D01G368000 chr3D 367351667 367355992 4325 True 7542 7542 98.070 379 4725 1 chr3D.!!$R4 4346
13 TraesCS5D01G368000 chr3D 94450002 94454210 4208 True 7060 7060 96.711 443 4725 1 chr3D.!!$R2 4282
14 TraesCS5D01G368000 chr3D 405845987 405849743 3756 True 6582 6582 98.203 443 4222 1 chr3D.!!$R5 3779
15 TraesCS5D01G368000 chr3D 135157784 135159982 2198 True 3875 3875 98.375 1 2213 1 chr3D.!!$R3 2212
16 TraesCS5D01G368000 chr3D 506885113 506887346 2233 True 3260 3260 92.936 2471 4727 1 chr3D.!!$R6 2256
17 TraesCS5D01G368000 chr6D 18603612 18607865 4253 True 7267 7267 97.392 443 4731 1 chr6D.!!$R1 4288
18 TraesCS5D01G368000 chr6D 400560423 400562209 1786 True 3046 3046 97.335 2932 4731 1 chr6D.!!$R2 1799
19 TraesCS5D01G368000 chr7D 78254252 78258329 4077 False 6918 6918 97.123 1 4128 1 chr7D.!!$F1 4127
20 TraesCS5D01G368000 chr7D 428974118 428974961 843 False 1343 1343 95.216 3876 4731 1 chr7D.!!$F2 855
21 TraesCS5D01G368000 chrUn 30207729 30211327 3598 True 6130 6130 97.384 1 3609 1 chrUn.!!$R1 3608
22 TraesCS5D01G368000 chr4A 616588274 616591804 3530 True 5469 5469 94.608 585 4128 1 chr4A.!!$R1 3543
23 TraesCS5D01G368000 chr4A 618204286 618207487 3201 True 4706 4706 93.340 951 4128 1 chr4A.!!$R2 3177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 2.037367 AGTGGCGGCTACTCCAGA 59.963 61.111 13.67 0.00 32.15 3.86 F
1059 1122 5.238868 CCCATCTATGCTGTTGATGAAGAAG 59.761 44.000 12.78 0.88 40.94 2.85 F
2302 2397 1.377333 GCAAGGGAGGGGTTTCTCG 60.377 63.158 0.00 0.00 34.74 4.04 F
3653 3759 0.519077 GCTGGCTTTGAGGAAGAACG 59.481 55.000 0.00 0.00 37.57 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1663 4.038271 TCATCAGCCTCCTTCAACAATT 57.962 40.909 0.0 0.0 0.00 2.32 R
2302 2397 0.257039 ATGAATGGTCTGCACCCCTC 59.743 55.000 0.0 0.0 42.99 4.30 R
3881 4120 0.112412 CCCCTCTCCTAGCTCCTCTC 59.888 65.000 0.0 0.0 0.00 3.20 R
4796 5180 0.035056 ATCTGAAACTTGGCTCCGGG 60.035 55.000 0.0 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 2.037367 AGTGGCGGCTACTCCAGA 59.963 61.111 13.67 0.00 32.15 3.86
885 948 5.953571 TGGAGATGGTAGAGAGTAATGCTA 58.046 41.667 0.00 0.00 0.00 3.49
1059 1122 5.238868 CCCATCTATGCTGTTGATGAAGAAG 59.761 44.000 12.78 0.88 40.94 2.85
2302 2397 1.377333 GCAAGGGAGGGGTTTCTCG 60.377 63.158 0.00 0.00 34.74 4.04
2665 2766 9.950496 ATCTTATGTCATTGTTCCTATATGGTC 57.050 33.333 0.00 0.00 37.07 4.02
2689 2790 6.971184 TCGTTTTGTGCTAGATAGTAGCTTAC 59.029 38.462 0.00 0.00 40.95 2.34
3193 3297 3.444029 AGAGGGCCAAATATTGCAAACT 58.556 40.909 6.18 0.00 0.00 2.66
3343 3448 5.011943 TCTCAGCAATAAACAAGGCCAAAAT 59.988 36.000 5.01 0.00 0.00 1.82
3653 3759 0.519077 GCTGGCTTTGAGGAAGAACG 59.481 55.000 0.00 0.00 37.57 3.95
3881 4120 3.478274 GCTGGGAGAGGAGCTGGG 61.478 72.222 0.00 0.00 32.12 4.45
3883 4122 1.761667 CTGGGAGAGGAGCTGGGAG 60.762 68.421 0.00 0.00 0.00 4.30
3891 4130 1.231641 GGAGCTGGGAGAGGAGCTA 59.768 63.158 0.00 0.00 45.72 3.32
3899 4138 0.112412 GGAGAGGAGCTAGGAGAGGG 59.888 65.000 0.00 0.00 0.00 4.30
3900 4139 0.112412 GAGAGGAGCTAGGAGAGGGG 59.888 65.000 0.00 0.00 0.00 4.79
3901 4140 1.533033 GAGGAGCTAGGAGAGGGGC 60.533 68.421 0.00 0.00 0.00 5.80
4045 4386 2.940514 TCTGGTCCCTCCACATCTAA 57.059 50.000 0.00 0.00 41.93 2.10
4500 4844 7.493367 ACTATTGGATAGAGTAACTCTGTTGC 58.507 38.462 0.00 0.00 41.37 4.17
4501 4845 6.552445 ATTGGATAGAGTAACTCTGTTGCT 57.448 37.500 0.00 0.95 41.37 3.91
4502 4846 5.330455 TGGATAGAGTAACTCTGTTGCTG 57.670 43.478 5.83 0.00 41.37 4.41
4503 4847 4.160439 TGGATAGAGTAACTCTGTTGCTGG 59.840 45.833 5.83 0.00 41.37 4.85
4504 4848 4.402793 GGATAGAGTAACTCTGTTGCTGGA 59.597 45.833 5.83 0.00 41.37 3.86
4505 4849 5.069781 GGATAGAGTAACTCTGTTGCTGGAT 59.930 44.000 5.83 0.08 41.37 3.41
4506 4850 6.265649 GGATAGAGTAACTCTGTTGCTGGATA 59.734 42.308 5.83 0.00 41.37 2.59
4507 4851 7.039363 GGATAGAGTAACTCTGTTGCTGGATAT 60.039 40.741 5.83 2.77 41.37 1.63
4508 4852 8.941995 ATAGAGTAACTCTGTTGCTGGATATA 57.058 34.615 5.83 0.00 41.37 0.86
4509 4853 7.847711 AGAGTAACTCTGTTGCTGGATATAT 57.152 36.000 5.83 0.00 39.62 0.86
4510 4854 8.256356 AGAGTAACTCTGTTGCTGGATATATT 57.744 34.615 5.83 0.00 39.62 1.28
4590 4972 0.874175 GCACTTTGGGTTTTCGGTGC 60.874 55.000 0.00 0.00 42.04 5.01
4727 5111 3.054361 ACCTAAAGGCATCAACTAGGGTG 60.054 47.826 0.00 0.00 39.32 4.61
4741 5125 6.980416 AACTAGGGTGTTGAGGATATAGAC 57.020 41.667 0.00 0.00 0.00 2.59
4742 5126 5.395611 ACTAGGGTGTTGAGGATATAGACC 58.604 45.833 0.00 0.00 0.00 3.85
4743 5127 4.561254 AGGGTGTTGAGGATATAGACCT 57.439 45.455 1.52 1.52 40.80 3.85
4744 5128 4.897051 AGGGTGTTGAGGATATAGACCTT 58.103 43.478 3.30 0.00 37.93 3.50
4745 5129 6.039415 AGGGTGTTGAGGATATAGACCTTA 57.961 41.667 3.30 0.00 37.93 2.69
4746 5130 6.078664 AGGGTGTTGAGGATATAGACCTTAG 58.921 44.000 3.30 0.00 37.93 2.18
4747 5131 6.075984 GGGTGTTGAGGATATAGACCTTAGA 58.924 44.000 3.30 0.00 37.93 2.10
4748 5132 6.209788 GGGTGTTGAGGATATAGACCTTAGAG 59.790 46.154 3.30 0.00 37.93 2.43
4749 5133 6.778559 GGTGTTGAGGATATAGACCTTAGAGT 59.221 42.308 3.30 0.00 37.93 3.24
4750 5134 7.040271 GGTGTTGAGGATATAGACCTTAGAGTC 60.040 44.444 3.30 0.00 37.93 3.36
4751 5135 7.502895 GTGTTGAGGATATAGACCTTAGAGTCA 59.497 40.741 0.00 0.00 39.34 3.41
4752 5136 7.502895 TGTTGAGGATATAGACCTTAGAGTCAC 59.497 40.741 0.00 0.00 39.34 3.67
4753 5137 6.544650 TGAGGATATAGACCTTAGAGTCACC 58.455 44.000 0.00 0.00 39.34 4.02
4754 5138 5.894653 AGGATATAGACCTTAGAGTCACCC 58.105 45.833 0.00 0.00 39.34 4.61
4755 5139 4.701171 GGATATAGACCTTAGAGTCACCCG 59.299 50.000 0.00 0.00 39.34 5.28
4756 5140 1.760192 TAGACCTTAGAGTCACCCGC 58.240 55.000 0.00 0.00 39.34 6.13
4757 5141 0.971447 AGACCTTAGAGTCACCCGCC 60.971 60.000 0.00 0.00 39.34 6.13
4758 5142 1.229082 ACCTTAGAGTCACCCGCCA 60.229 57.895 0.00 0.00 0.00 5.69
4759 5143 1.258445 ACCTTAGAGTCACCCGCCAG 61.258 60.000 0.00 0.00 0.00 4.85
4760 5144 1.517832 CTTAGAGTCACCCGCCAGG 59.482 63.158 0.00 0.00 43.78 4.45
4761 5145 0.970937 CTTAGAGTCACCCGCCAGGA 60.971 60.000 0.00 0.00 41.02 3.86
4762 5146 0.970937 TTAGAGTCACCCGCCAGGAG 60.971 60.000 0.00 0.00 41.02 3.69
4763 5147 2.856039 TAGAGTCACCCGCCAGGAGG 62.856 65.000 1.14 1.14 41.02 4.30
4774 5158 3.793888 CAGGAGGGGCCGGGTTAC 61.794 72.222 2.18 0.00 43.43 2.50
4775 5159 4.020878 AGGAGGGGCCGGGTTACT 62.021 66.667 2.18 0.00 43.43 2.24
4776 5160 3.477346 GGAGGGGCCGGGTTACTC 61.477 72.222 2.18 0.00 0.00 2.59
4777 5161 3.846430 GAGGGGCCGGGTTACTCG 61.846 72.222 2.18 0.00 0.00 4.18
4778 5162 4.709604 AGGGGCCGGGTTACTCGT 62.710 66.667 2.18 0.00 0.00 4.18
4779 5163 2.759560 GGGGCCGGGTTACTCGTA 60.760 66.667 2.18 0.00 0.00 3.43
4780 5164 2.789715 GGGGCCGGGTTACTCGTAG 61.790 68.421 2.18 0.00 0.00 3.51
4781 5165 2.789715 GGGCCGGGTTACTCGTAGG 61.790 68.421 2.18 0.00 0.00 3.18
4782 5166 2.789715 GGCCGGGTTACTCGTAGGG 61.790 68.421 2.18 0.00 0.00 3.53
4783 5167 2.054453 GCCGGGTTACTCGTAGGGT 61.054 63.158 2.18 0.00 0.00 4.34
4784 5168 2.009424 GCCGGGTTACTCGTAGGGTC 62.009 65.000 2.18 0.00 0.00 4.46
4785 5169 1.718757 CCGGGTTACTCGTAGGGTCG 61.719 65.000 3.32 0.00 0.00 4.79
4786 5170 0.744414 CGGGTTACTCGTAGGGTCGA 60.744 60.000 0.00 0.00 38.19 4.20
4787 5171 0.735471 GGGTTACTCGTAGGGTCGAC 59.265 60.000 7.13 7.13 35.91 4.20
4788 5172 0.375106 GGTTACTCGTAGGGTCGACG 59.625 60.000 9.92 0.00 41.69 5.12
4789 5173 0.247854 GTTACTCGTAGGGTCGACGC 60.248 60.000 23.85 23.85 40.14 5.19
4790 5174 1.369091 TTACTCGTAGGGTCGACGCC 61.369 60.000 26.94 19.81 40.14 5.68
4791 5175 2.520465 TACTCGTAGGGTCGACGCCA 62.520 60.000 26.94 13.02 40.14 5.69
4792 5176 3.109612 CTCGTAGGGTCGACGCCAG 62.110 68.421 26.94 18.44 40.14 4.85
4793 5177 3.129502 CGTAGGGTCGACGCCAGA 61.130 66.667 26.94 11.66 32.89 3.86
4794 5178 2.693762 CGTAGGGTCGACGCCAGAA 61.694 63.158 26.94 9.40 32.89 3.02
4795 5179 1.139095 GTAGGGTCGACGCCAGAAG 59.861 63.158 26.94 0.00 0.00 2.85
4796 5180 2.707849 TAGGGTCGACGCCAGAAGC 61.708 63.158 26.94 2.30 38.52 3.86
4802 5186 4.821589 GACGCCAGAAGCCCGGAG 62.822 72.222 0.73 0.00 38.78 4.63
4806 5190 4.033776 CCAGAAGCCCGGAGCCAA 62.034 66.667 0.73 0.00 45.47 4.52
4807 5191 2.437359 CAGAAGCCCGGAGCCAAG 60.437 66.667 0.73 0.00 45.47 3.61
4808 5192 2.930562 AGAAGCCCGGAGCCAAGT 60.931 61.111 0.73 0.00 45.47 3.16
4809 5193 2.034221 GAAGCCCGGAGCCAAGTT 59.966 61.111 0.73 0.00 45.47 2.66
4810 5194 1.603739 GAAGCCCGGAGCCAAGTTT 60.604 57.895 0.73 0.00 45.47 2.66
4811 5195 1.587043 GAAGCCCGGAGCCAAGTTTC 61.587 60.000 0.73 0.56 45.47 2.78
4812 5196 2.282180 GCCCGGAGCCAAGTTTCA 60.282 61.111 0.73 0.00 34.35 2.69
4813 5197 2.335712 GCCCGGAGCCAAGTTTCAG 61.336 63.158 0.73 0.00 34.35 3.02
4814 5198 1.374947 CCCGGAGCCAAGTTTCAGA 59.625 57.895 0.73 0.00 0.00 3.27
4815 5199 0.035056 CCCGGAGCCAAGTTTCAGAT 60.035 55.000 0.73 0.00 0.00 2.90
4816 5200 1.089920 CCGGAGCCAAGTTTCAGATG 58.910 55.000 0.00 0.00 0.00 2.90
4817 5201 1.339055 CCGGAGCCAAGTTTCAGATGA 60.339 52.381 0.00 0.00 0.00 2.92
4818 5202 2.636830 CGGAGCCAAGTTTCAGATGAT 58.363 47.619 0.00 0.00 0.00 2.45
4819 5203 2.353889 CGGAGCCAAGTTTCAGATGATG 59.646 50.000 0.00 0.00 0.00 3.07
4820 5204 2.686915 GGAGCCAAGTTTCAGATGATGG 59.313 50.000 0.00 0.00 0.00 3.51
4821 5205 2.686915 GAGCCAAGTTTCAGATGATGGG 59.313 50.000 3.13 0.00 0.00 4.00
4822 5206 1.135721 GCCAAGTTTCAGATGATGGGC 59.864 52.381 3.13 0.00 0.00 5.36
4823 5207 1.753073 CCAAGTTTCAGATGATGGGCC 59.247 52.381 0.00 0.00 0.00 5.80
4824 5208 2.449464 CAAGTTTCAGATGATGGGCCA 58.551 47.619 9.61 9.61 0.00 5.36
4825 5209 2.426024 CAAGTTTCAGATGATGGGCCAG 59.574 50.000 13.78 0.00 0.00 4.85
4826 5210 1.918262 AGTTTCAGATGATGGGCCAGA 59.082 47.619 13.78 0.41 0.00 3.86
4827 5211 2.092538 AGTTTCAGATGATGGGCCAGAG 60.093 50.000 13.78 0.00 0.00 3.35
4828 5212 1.883678 TTCAGATGATGGGCCAGAGA 58.116 50.000 13.78 0.00 0.00 3.10
4829 5213 2.113807 TCAGATGATGGGCCAGAGAT 57.886 50.000 13.78 3.08 0.00 2.75
4830 5214 1.697982 TCAGATGATGGGCCAGAGATG 59.302 52.381 13.78 7.28 0.00 2.90
4831 5215 1.065647 AGATGATGGGCCAGAGATGG 58.934 55.000 13.78 0.00 0.00 3.51
4832 5216 0.037877 GATGATGGGCCAGAGATGGG 59.962 60.000 13.78 0.00 0.00 4.00
4840 5224 1.828768 CCAGAGATGGGCTGAGACC 59.171 63.158 0.00 0.00 35.39 3.85
4847 5231 4.217112 GGGCTGAGACCCGGATAT 57.783 61.111 0.73 0.00 40.98 1.63
4848 5232 1.674057 GGGCTGAGACCCGGATATG 59.326 63.158 0.73 0.00 40.98 1.78
4849 5233 1.674057 GGCTGAGACCCGGATATGG 59.326 63.158 0.73 0.00 0.00 2.74
4850 5234 1.004440 GCTGAGACCCGGATATGGC 60.004 63.158 0.73 0.00 0.00 4.40
4851 5235 1.476007 GCTGAGACCCGGATATGGCT 61.476 60.000 0.73 0.00 0.00 4.75
4852 5236 1.051812 CTGAGACCCGGATATGGCTT 58.948 55.000 0.73 0.00 0.00 4.35
4853 5237 2.248248 CTGAGACCCGGATATGGCTTA 58.752 52.381 0.73 0.00 0.00 3.09
4854 5238 2.632996 CTGAGACCCGGATATGGCTTAA 59.367 50.000 0.73 0.00 0.00 1.85
4855 5239 3.042682 TGAGACCCGGATATGGCTTAAA 58.957 45.455 0.73 0.00 0.00 1.52
4856 5240 3.071023 TGAGACCCGGATATGGCTTAAAG 59.929 47.826 0.73 0.00 0.00 1.85
4857 5241 2.152016 GACCCGGATATGGCTTAAAGC 58.848 52.381 0.73 0.00 41.46 3.51
4872 5256 6.737254 GCTTAAAGCCTGTAGTTACAATCA 57.263 37.500 0.00 0.00 34.48 2.57
4873 5257 7.321745 GCTTAAAGCCTGTAGTTACAATCAT 57.678 36.000 0.00 0.00 34.48 2.45
4874 5258 7.762382 GCTTAAAGCCTGTAGTTACAATCATT 58.238 34.615 0.00 0.00 34.48 2.57
4875 5259 7.698130 GCTTAAAGCCTGTAGTTACAATCATTG 59.302 37.037 0.00 0.00 34.48 2.82
4877 5261 7.524717 AAAGCCTGTAGTTACAATCATTGTT 57.475 32.000 8.69 0.00 42.22 2.83
4878 5262 8.630054 AAAGCCTGTAGTTACAATCATTGTTA 57.370 30.769 8.69 0.00 42.22 2.41
4879 5263 8.807948 AAGCCTGTAGTTACAATCATTGTTAT 57.192 30.769 8.69 0.00 42.22 1.89
4880 5264 9.899661 AAGCCTGTAGTTACAATCATTGTTATA 57.100 29.630 8.69 0.00 42.22 0.98
4881 5265 9.547753 AGCCTGTAGTTACAATCATTGTTATAG 57.452 33.333 8.69 3.22 42.22 1.31
4882 5266 9.326413 GCCTGTAGTTACAATCATTGTTATAGT 57.674 33.333 8.69 0.97 42.22 2.12
4900 5284 8.680903 TGTTATAGTAGACTTGTAGTGTAAGGC 58.319 37.037 0.00 0.00 33.25 4.35
4901 5285 8.680903 GTTATAGTAGACTTGTAGTGTAAGGCA 58.319 37.037 0.00 0.00 35.58 4.75
4902 5286 7.713734 ATAGTAGACTTGTAGTGTAAGGCAA 57.286 36.000 0.00 0.00 35.58 4.52
4903 5287 6.026947 AGTAGACTTGTAGTGTAAGGCAAG 57.973 41.667 0.00 0.00 42.65 4.01
4922 5306 5.704217 CAAGTATTGTTTAGAGTCCGAGC 57.296 43.478 0.00 0.00 42.34 5.03
4923 5307 4.388378 AGTATTGTTTAGAGTCCGAGCC 57.612 45.455 0.00 0.00 0.00 4.70
4924 5308 2.295253 ATTGTTTAGAGTCCGAGCCG 57.705 50.000 0.00 0.00 0.00 5.52
4938 5322 4.327885 GCCGGACGCTCTTATGAG 57.672 61.111 5.05 1.25 42.96 2.90
4946 5330 2.029666 CTCTTATGAGCCGGCCGG 59.970 66.667 40.26 40.26 33.12 6.13
4947 5331 3.521529 CTCTTATGAGCCGGCCGGG 62.522 68.421 43.31 25.74 39.58 5.73
4948 5332 3.546543 CTTATGAGCCGGCCGGGA 61.547 66.667 43.31 10.93 38.47 5.14
4949 5333 3.809374 CTTATGAGCCGGCCGGGAC 62.809 68.421 43.31 28.68 38.47 4.46
4950 5334 4.853142 TATGAGCCGGCCGGGACT 62.853 66.667 43.31 32.89 38.47 3.85
4954 5338 4.772231 AGCCGGCCGGGACTCTAA 62.772 66.667 43.31 0.00 38.47 2.10
4955 5339 4.222847 GCCGGCCGGGACTCTAAG 62.223 72.222 43.31 17.04 38.47 2.18
4956 5340 3.537874 CCGGCCGGGACTCTAAGG 61.538 72.222 37.42 6.27 38.47 2.69
4957 5341 3.537874 CGGCCGGGACTCTAAGGG 61.538 72.222 20.10 0.00 0.00 3.95
4958 5342 3.862991 GGCCGGGACTCTAAGGGC 61.863 72.222 2.18 0.00 43.01 5.19
4959 5343 2.764547 GCCGGGACTCTAAGGGCT 60.765 66.667 2.18 0.00 40.59 5.19
4960 5344 3.095347 GCCGGGACTCTAAGGGCTG 62.095 68.421 2.18 0.00 40.59 4.85
4961 5345 2.501610 CGGGACTCTAAGGGCTGC 59.498 66.667 0.00 0.00 0.00 5.25
4962 5346 2.060980 CGGGACTCTAAGGGCTGCT 61.061 63.158 0.00 0.00 0.00 4.24
4963 5347 1.524482 GGGACTCTAAGGGCTGCTG 59.476 63.158 0.00 0.00 0.00 4.41
4964 5348 1.524482 GGACTCTAAGGGCTGCTGG 59.476 63.158 0.00 0.00 0.00 4.85
4965 5349 1.524482 GACTCTAAGGGCTGCTGGG 59.476 63.158 0.00 0.00 0.00 4.45
4966 5350 2.191641 CTCTAAGGGCTGCTGGGC 59.808 66.667 0.00 0.00 40.05 5.36
4967 5351 3.746949 CTCTAAGGGCTGCTGGGCG 62.747 68.421 0.00 0.00 41.87 6.13
4968 5352 4.101448 CTAAGGGCTGCTGGGCGT 62.101 66.667 0.00 0.00 41.87 5.68
4969 5353 4.096003 TAAGGGCTGCTGGGCGTC 62.096 66.667 0.00 0.00 41.87 5.19
4985 5369 3.955650 GCGTCAGCCTCCCTATATAAA 57.044 47.619 0.00 0.00 37.42 1.40
4986 5370 3.851098 GCGTCAGCCTCCCTATATAAAG 58.149 50.000 0.00 0.00 37.42 1.85
4987 5371 3.368531 GCGTCAGCCTCCCTATATAAAGG 60.369 52.174 2.47 2.47 37.42 3.11
4988 5372 6.423712 GCGTCAGCCTCCCTATATAAAGGG 62.424 54.167 4.33 4.33 46.97 3.95
5007 5391 4.397832 GGACCCGGCAGCGGTTTA 62.398 66.667 0.00 0.00 32.27 2.01
5008 5392 2.358984 GACCCGGCAGCGGTTTAA 60.359 61.111 0.00 0.00 32.27 1.52
5009 5393 2.359478 ACCCGGCAGCGGTTTAAG 60.359 61.111 0.00 0.00 0.00 1.85
5010 5394 3.131478 CCCGGCAGCGGTTTAAGG 61.131 66.667 0.00 0.00 0.00 2.69
5011 5395 3.131478 CCGGCAGCGGTTTAAGGG 61.131 66.667 0.00 0.00 0.00 3.95
5012 5396 3.810896 CGGCAGCGGTTTAAGGGC 61.811 66.667 0.00 0.00 0.00 5.19
5013 5397 3.810896 GGCAGCGGTTTAAGGGCG 61.811 66.667 0.00 0.00 0.00 6.13
5014 5398 2.744709 GCAGCGGTTTAAGGGCGA 60.745 61.111 0.00 0.00 0.00 5.54
5015 5399 3.035576 GCAGCGGTTTAAGGGCGAC 62.036 63.158 0.00 0.00 0.00 5.19
5016 5400 1.669760 CAGCGGTTTAAGGGCGACA 60.670 57.895 0.00 0.00 0.00 4.35
5017 5401 1.071814 AGCGGTTTAAGGGCGACAA 59.928 52.632 0.00 0.00 0.00 3.18
5018 5402 1.208358 GCGGTTTAAGGGCGACAAC 59.792 57.895 0.00 0.00 0.00 3.32
5019 5403 1.508808 GCGGTTTAAGGGCGACAACA 61.509 55.000 0.00 0.00 0.00 3.33
5020 5404 0.945813 CGGTTTAAGGGCGACAACAA 59.054 50.000 0.00 0.00 0.00 2.83
5021 5405 1.538075 CGGTTTAAGGGCGACAACAAT 59.462 47.619 0.00 0.00 0.00 2.71
5022 5406 2.413634 CGGTTTAAGGGCGACAACAATC 60.414 50.000 0.00 0.00 0.00 2.67
5023 5407 2.817844 GGTTTAAGGGCGACAACAATCT 59.182 45.455 0.00 0.00 0.00 2.40
5024 5408 4.004982 GGTTTAAGGGCGACAACAATCTA 58.995 43.478 0.00 0.00 0.00 1.98
5025 5409 4.456566 GGTTTAAGGGCGACAACAATCTAA 59.543 41.667 0.00 0.00 0.00 2.10
5026 5410 5.124936 GGTTTAAGGGCGACAACAATCTAAT 59.875 40.000 0.00 0.00 0.00 1.73
5027 5411 6.255950 GTTTAAGGGCGACAACAATCTAATC 58.744 40.000 0.00 0.00 0.00 1.75
5028 5412 2.550978 AGGGCGACAACAATCTAATCG 58.449 47.619 0.00 0.00 35.91 3.34
5029 5413 2.167693 AGGGCGACAACAATCTAATCGA 59.832 45.455 0.00 0.00 34.77 3.59
5030 5414 2.540101 GGGCGACAACAATCTAATCGAG 59.460 50.000 0.00 0.00 34.77 4.04
5031 5415 3.444916 GGCGACAACAATCTAATCGAGA 58.555 45.455 0.00 0.00 39.01 4.04
5032 5416 3.487574 GGCGACAACAATCTAATCGAGAG 59.512 47.826 0.00 0.00 37.70 3.20
5033 5417 3.060873 GCGACAACAATCTAATCGAGAGC 60.061 47.826 0.00 0.00 37.70 4.09
5034 5418 3.487574 CGACAACAATCTAATCGAGAGCC 59.512 47.826 0.00 0.00 37.70 4.70
5035 5419 3.448686 ACAACAATCTAATCGAGAGCCG 58.551 45.455 0.00 0.00 37.70 5.52
5036 5420 2.797156 CAACAATCTAATCGAGAGCCGG 59.203 50.000 0.00 0.00 37.70 6.13
5037 5421 1.341531 ACAATCTAATCGAGAGCCGGG 59.658 52.381 2.18 0.00 37.70 5.73
5038 5422 0.318762 AATCTAATCGAGAGCCGGGC 59.681 55.000 12.11 12.11 37.70 6.13
5039 5423 0.827925 ATCTAATCGAGAGCCGGGCA 60.828 55.000 23.09 0.00 37.70 5.36
5040 5424 0.827925 TCTAATCGAGAGCCGGGCAT 60.828 55.000 23.09 9.38 39.14 4.40
5041 5425 0.888619 CTAATCGAGAGCCGGGCATA 59.111 55.000 23.09 1.31 39.14 3.14
5042 5426 0.888619 TAATCGAGAGCCGGGCATAG 59.111 55.000 23.09 9.81 39.14 2.23
5043 5427 2.441822 AATCGAGAGCCGGGCATAGC 62.442 60.000 23.09 7.43 39.14 2.97
5044 5428 3.610669 CGAGAGCCGGGCATAGCT 61.611 66.667 23.09 12.37 43.55 3.32
5045 5429 2.030262 GAGAGCCGGGCATAGCTG 59.970 66.667 23.09 0.00 40.11 4.24
5046 5430 2.765807 AGAGCCGGGCATAGCTGT 60.766 61.111 23.09 0.00 40.11 4.40
5047 5431 2.190578 GAGCCGGGCATAGCTGTT 59.809 61.111 23.09 0.00 40.11 3.16
5048 5432 1.048724 AGAGCCGGGCATAGCTGTTA 61.049 55.000 23.09 0.00 40.11 2.41
5049 5433 0.601311 GAGCCGGGCATAGCTGTTAG 60.601 60.000 23.09 0.00 40.11 2.34
5050 5434 2.254464 GCCGGGCATAGCTGTTAGC 61.254 63.158 15.62 0.00 42.84 3.09
5059 5443 2.512515 GCTGTTAGCTCCCTGGCG 60.513 66.667 0.00 0.00 38.45 5.69
5060 5444 3.019003 GCTGTTAGCTCCCTGGCGA 62.019 63.158 0.00 0.00 38.45 5.54
5061 5445 1.826024 CTGTTAGCTCCCTGGCGAT 59.174 57.895 0.00 0.00 37.29 4.58
5062 5446 0.249657 CTGTTAGCTCCCTGGCGATC 60.250 60.000 0.00 0.00 37.29 3.69
5063 5447 1.300233 GTTAGCTCCCTGGCGATCG 60.300 63.158 11.69 11.69 37.29 3.69
5064 5448 1.756950 TTAGCTCCCTGGCGATCGT 60.757 57.895 17.81 0.00 37.29 3.73
5065 5449 0.466739 TTAGCTCCCTGGCGATCGTA 60.467 55.000 17.81 5.51 37.29 3.43
5066 5450 0.466739 TAGCTCCCTGGCGATCGTAA 60.467 55.000 17.81 4.30 37.29 3.18
5067 5451 1.591863 GCTCCCTGGCGATCGTAAC 60.592 63.158 17.81 8.24 0.00 2.50
5068 5452 1.067582 CTCCCTGGCGATCGTAACC 59.932 63.158 17.81 10.13 0.00 2.85
5069 5453 2.108362 CCCTGGCGATCGTAACCC 59.892 66.667 17.81 9.75 0.00 4.11
5070 5454 2.108362 CCTGGCGATCGTAACCCC 59.892 66.667 17.81 9.36 0.00 4.95
5071 5455 2.727392 CCTGGCGATCGTAACCCCA 61.727 63.158 17.81 13.61 0.00 4.96
5072 5456 1.227263 CTGGCGATCGTAACCCCAG 60.227 63.158 19.75 19.75 37.35 4.45
5073 5457 1.672854 CTGGCGATCGTAACCCCAGA 61.673 60.000 25.63 1.76 44.50 3.86
5074 5458 1.227176 GGCGATCGTAACCCCAGAC 60.227 63.158 17.81 0.00 0.00 3.51
5075 5459 1.514087 GCGATCGTAACCCCAGACA 59.486 57.895 17.81 0.00 0.00 3.41
5076 5460 0.108520 GCGATCGTAACCCCAGACAA 60.109 55.000 17.81 0.00 0.00 3.18
5077 5461 1.472728 GCGATCGTAACCCCAGACAAT 60.473 52.381 17.81 0.00 0.00 2.71
5078 5462 2.223876 GCGATCGTAACCCCAGACAATA 60.224 50.000 17.81 0.00 0.00 1.90
5079 5463 3.738899 GCGATCGTAACCCCAGACAATAA 60.739 47.826 17.81 0.00 0.00 1.40
5080 5464 3.800506 CGATCGTAACCCCAGACAATAAC 59.199 47.826 7.03 0.00 0.00 1.89
5081 5465 4.678574 CGATCGTAACCCCAGACAATAACA 60.679 45.833 7.03 0.00 0.00 2.41
5082 5466 4.829872 TCGTAACCCCAGACAATAACAT 57.170 40.909 0.00 0.00 0.00 2.71
5083 5467 4.761975 TCGTAACCCCAGACAATAACATC 58.238 43.478 0.00 0.00 0.00 3.06
5084 5468 4.468510 TCGTAACCCCAGACAATAACATCT 59.531 41.667 0.00 0.00 0.00 2.90
5085 5469 4.809426 CGTAACCCCAGACAATAACATCTC 59.191 45.833 0.00 0.00 0.00 2.75
5086 5470 4.927267 AACCCCAGACAATAACATCTCA 57.073 40.909 0.00 0.00 0.00 3.27
5087 5471 4.927267 ACCCCAGACAATAACATCTCAA 57.073 40.909 0.00 0.00 0.00 3.02
5088 5472 5.255397 ACCCCAGACAATAACATCTCAAA 57.745 39.130 0.00 0.00 0.00 2.69
5089 5473 5.010282 ACCCCAGACAATAACATCTCAAAC 58.990 41.667 0.00 0.00 0.00 2.93
5090 5474 5.222130 ACCCCAGACAATAACATCTCAAACT 60.222 40.000 0.00 0.00 0.00 2.66
5091 5475 5.124457 CCCCAGACAATAACATCTCAAACTG 59.876 44.000 0.00 0.00 0.00 3.16
5092 5476 5.124457 CCCAGACAATAACATCTCAAACTGG 59.876 44.000 0.00 0.00 40.23 4.00
5093 5477 5.939883 CCAGACAATAACATCTCAAACTGGA 59.060 40.000 0.00 0.00 42.22 3.86
5094 5478 6.128172 CCAGACAATAACATCTCAAACTGGAC 60.128 42.308 0.00 0.00 42.22 4.02
5095 5479 5.639506 AGACAATAACATCTCAAACTGGACG 59.360 40.000 0.00 0.00 0.00 4.79
5096 5480 5.305585 ACAATAACATCTCAAACTGGACGT 58.694 37.500 0.00 0.00 0.00 4.34
5097 5481 6.460781 ACAATAACATCTCAAACTGGACGTA 58.539 36.000 0.00 0.00 0.00 3.57
5098 5482 6.590292 ACAATAACATCTCAAACTGGACGTAG 59.410 38.462 0.00 0.00 0.00 3.51
5099 5483 3.594603 ACATCTCAAACTGGACGTAGG 57.405 47.619 0.00 0.00 0.00 3.18
5100 5484 2.271800 CATCTCAAACTGGACGTAGGC 58.728 52.381 0.00 0.00 0.00 3.93
5101 5485 1.629043 TCTCAAACTGGACGTAGGCT 58.371 50.000 0.00 0.00 0.00 4.58
5102 5486 1.968493 TCTCAAACTGGACGTAGGCTT 59.032 47.619 0.00 0.00 0.00 4.35
5103 5487 2.367567 TCTCAAACTGGACGTAGGCTTT 59.632 45.455 0.00 0.00 0.00 3.51
5104 5488 3.139077 CTCAAACTGGACGTAGGCTTTT 58.861 45.455 0.00 0.00 0.00 2.27
5105 5489 4.039488 TCTCAAACTGGACGTAGGCTTTTA 59.961 41.667 0.00 0.00 0.00 1.52
5106 5490 4.060205 TCAAACTGGACGTAGGCTTTTAC 58.940 43.478 0.00 0.00 0.00 2.01
5107 5491 2.756840 ACTGGACGTAGGCTTTTACC 57.243 50.000 0.00 0.00 0.00 2.85
5108 5492 2.254508 ACTGGACGTAGGCTTTTACCT 58.745 47.619 0.00 0.00 44.31 3.08
5109 5493 2.636403 ACTGGACGTAGGCTTTTACCTT 59.364 45.455 0.00 0.00 41.50 3.50
5110 5494 3.259902 CTGGACGTAGGCTTTTACCTTC 58.740 50.000 0.00 0.00 41.50 3.46
5111 5495 2.633967 TGGACGTAGGCTTTTACCTTCA 59.366 45.455 0.00 0.00 41.50 3.02
5112 5496 2.998670 GGACGTAGGCTTTTACCTTCAC 59.001 50.000 0.00 0.00 41.50 3.18
5113 5497 2.998670 GACGTAGGCTTTTACCTTCACC 59.001 50.000 0.00 0.00 41.50 4.02
5114 5498 1.997606 CGTAGGCTTTTACCTTCACCG 59.002 52.381 0.00 0.00 41.50 4.94
5115 5499 2.611224 CGTAGGCTTTTACCTTCACCGT 60.611 50.000 0.00 0.00 41.50 4.83
5116 5500 3.367292 CGTAGGCTTTTACCTTCACCGTA 60.367 47.826 0.00 0.00 41.50 4.02
5117 5501 3.775261 AGGCTTTTACCTTCACCGTAA 57.225 42.857 0.00 0.00 36.28 3.18
5118 5502 3.671716 AGGCTTTTACCTTCACCGTAAG 58.328 45.455 0.00 0.00 36.28 2.34
5130 5514 2.125269 CGTAAGGGGCCGAACCAG 60.125 66.667 0.00 0.00 42.05 4.00
5131 5515 2.951101 CGTAAGGGGCCGAACCAGT 61.951 63.158 0.00 0.00 42.05 4.00
5132 5516 1.606885 CGTAAGGGGCCGAACCAGTA 61.607 60.000 0.00 0.00 42.05 2.74
5133 5517 0.835276 GTAAGGGGCCGAACCAGTAT 59.165 55.000 0.00 0.00 42.05 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.647629 CGCGCTACTGTACTCCGAT 59.352 57.895 5.56 0.00 0.00 4.18
114 115 0.809241 GCCTCTGCTCCATCGACAAG 60.809 60.000 0.00 0.00 33.53 3.16
439 440 3.423539 AACACCTAATGCTGCTCTGAA 57.576 42.857 0.00 0.00 0.00 3.02
885 948 4.714632 TGCCTCTTTACTAGTTGCAACTT 58.285 39.130 35.20 21.63 40.37 2.66
1580 1663 4.038271 TCATCAGCCTCCTTCAACAATT 57.962 40.909 0.00 0.00 0.00 2.32
2302 2397 0.257039 ATGAATGGTCTGCACCCCTC 59.743 55.000 0.00 0.00 42.99 4.30
2665 2766 6.198591 GGTAAGCTACTATCTAGCACAAAACG 59.801 42.308 2.37 0.00 42.68 3.60
2689 2790 4.700213 CCTGGGACACACAATTAAACTAGG 59.300 45.833 0.00 0.00 0.00 3.02
3193 3297 3.788227 AGTCCACACCAGCTTGAATTA 57.212 42.857 0.00 0.00 0.00 1.40
3343 3448 6.061022 TGCTGACATAATCCTCTGGTTTTA 57.939 37.500 0.00 0.00 0.00 1.52
3469 3574 6.013725 TCCTCTCTTCACTTTAAATGCAGGTA 60.014 38.462 0.00 0.00 0.00 3.08
3854 4081 1.938596 TCTCCCAGCTCCTCTCCCT 60.939 63.158 0.00 0.00 0.00 4.20
3881 4120 0.112412 CCCCTCTCCTAGCTCCTCTC 59.888 65.000 0.00 0.00 0.00 3.20
3883 4122 1.533033 GCCCCTCTCCTAGCTCCTC 60.533 68.421 0.00 0.00 0.00 3.71
3891 4130 4.737476 AGCTGCAGCCCCTCTCCT 62.737 66.667 34.39 11.28 43.38 3.69
4045 4386 2.896685 GCAGTAGATGTAGAGGGAGCAT 59.103 50.000 0.00 0.00 0.00 3.79
4499 4843 8.915057 ACAATATATCCAGCAATATATCCAGC 57.085 34.615 6.70 0.00 34.95 4.85
4510 4854 9.791801 ACAATGTATACAACAATATATCCAGCA 57.208 29.630 10.14 0.00 42.70 4.41
4590 4972 4.125695 GTTCCGTCGACCCCGAGG 62.126 72.222 10.58 4.95 46.52 4.63
4727 5111 7.040271 GGTGACTCTAAGGTCTATATCCTCAAC 60.040 44.444 0.00 0.00 37.16 3.18
4731 5115 5.515184 CGGGTGACTCTAAGGTCTATATCCT 60.515 48.000 0.00 0.00 37.16 3.24
4732 5116 4.701171 CGGGTGACTCTAAGGTCTATATCC 59.299 50.000 0.00 0.00 37.16 2.59
4733 5117 4.156373 GCGGGTGACTCTAAGGTCTATATC 59.844 50.000 0.00 0.00 37.16 1.63
4734 5118 4.080687 GCGGGTGACTCTAAGGTCTATAT 58.919 47.826 0.00 0.00 37.16 0.86
4735 5119 3.484407 GCGGGTGACTCTAAGGTCTATA 58.516 50.000 0.00 0.00 37.16 1.31
4736 5120 2.308690 GCGGGTGACTCTAAGGTCTAT 58.691 52.381 0.00 0.00 37.16 1.98
4737 5121 1.684248 GGCGGGTGACTCTAAGGTCTA 60.684 57.143 0.00 0.00 37.16 2.59
4738 5122 0.971447 GGCGGGTGACTCTAAGGTCT 60.971 60.000 0.00 0.00 37.16 3.85
4739 5123 1.255667 TGGCGGGTGACTCTAAGGTC 61.256 60.000 0.00 0.00 36.81 3.85
4740 5124 1.229082 TGGCGGGTGACTCTAAGGT 60.229 57.895 0.00 0.00 0.00 3.50
4741 5125 1.517832 CTGGCGGGTGACTCTAAGG 59.482 63.158 0.00 0.00 0.00 2.69
4742 5126 0.970937 TCCTGGCGGGTGACTCTAAG 60.971 60.000 13.14 0.00 36.25 2.18
4743 5127 0.970937 CTCCTGGCGGGTGACTCTAA 60.971 60.000 13.14 0.00 36.25 2.10
4744 5128 1.379977 CTCCTGGCGGGTGACTCTA 60.380 63.158 13.14 0.00 36.25 2.43
4745 5129 2.681778 CTCCTGGCGGGTGACTCT 60.682 66.667 13.14 0.00 36.25 3.24
4746 5130 3.775654 CCTCCTGGCGGGTGACTC 61.776 72.222 15.89 0.00 36.25 3.36
4757 5141 3.793888 GTAACCCGGCCCCTCCTG 61.794 72.222 0.00 0.00 0.00 3.86
4758 5142 3.997756 GAGTAACCCGGCCCCTCCT 62.998 68.421 0.00 0.00 0.00 3.69
4759 5143 3.477346 GAGTAACCCGGCCCCTCC 61.477 72.222 0.00 0.00 0.00 4.30
4760 5144 3.846430 CGAGTAACCCGGCCCCTC 61.846 72.222 0.00 0.00 0.00 4.30
4761 5145 3.301222 TACGAGTAACCCGGCCCCT 62.301 63.158 0.00 0.00 0.00 4.79
4762 5146 2.759560 TACGAGTAACCCGGCCCC 60.760 66.667 0.00 0.00 0.00 5.80
4763 5147 2.789715 CCTACGAGTAACCCGGCCC 61.790 68.421 0.00 0.00 0.00 5.80
4764 5148 2.789715 CCCTACGAGTAACCCGGCC 61.790 68.421 0.00 0.00 0.00 6.13
4765 5149 2.009424 GACCCTACGAGTAACCCGGC 62.009 65.000 0.00 0.00 0.00 6.13
4766 5150 1.718757 CGACCCTACGAGTAACCCGG 61.719 65.000 0.00 0.00 35.09 5.73
4767 5151 0.744414 TCGACCCTACGAGTAACCCG 60.744 60.000 0.00 0.00 37.37 5.28
4768 5152 0.735471 GTCGACCCTACGAGTAACCC 59.265 60.000 3.51 0.00 42.88 4.11
4769 5153 0.375106 CGTCGACCCTACGAGTAACC 59.625 60.000 10.58 0.00 42.90 2.85
4770 5154 0.247854 GCGTCGACCCTACGAGTAAC 60.248 60.000 10.58 0.00 42.90 2.50
4771 5155 1.369091 GGCGTCGACCCTACGAGTAA 61.369 60.000 10.58 0.00 42.90 2.24
4772 5156 1.815421 GGCGTCGACCCTACGAGTA 60.815 63.158 10.58 0.00 42.90 2.59
4773 5157 3.130160 GGCGTCGACCCTACGAGT 61.130 66.667 10.58 0.00 42.90 4.18
4774 5158 3.109612 CTGGCGTCGACCCTACGAG 62.110 68.421 19.61 8.49 42.90 4.18
4775 5159 3.129502 CTGGCGTCGACCCTACGA 61.130 66.667 19.61 0.00 42.90 3.43
4776 5160 2.594119 CTTCTGGCGTCGACCCTACG 62.594 65.000 19.61 6.89 43.12 3.51
4777 5161 1.139095 CTTCTGGCGTCGACCCTAC 59.861 63.158 19.61 5.76 0.00 3.18
4778 5162 2.707849 GCTTCTGGCGTCGACCCTA 61.708 63.158 19.61 5.48 0.00 3.53
4779 5163 4.070552 GCTTCTGGCGTCGACCCT 62.071 66.667 19.61 0.00 0.00 4.34
4785 5169 4.821589 CTCCGGGCTTCTGGCGTC 62.822 72.222 0.00 0.00 42.94 5.19
4789 5173 3.984193 CTTGGCTCCGGGCTTCTGG 62.984 68.421 13.58 0.00 41.46 3.86
4790 5174 2.437359 CTTGGCTCCGGGCTTCTG 60.437 66.667 13.58 0.83 41.46 3.02
4791 5175 2.069165 AAACTTGGCTCCGGGCTTCT 62.069 55.000 13.58 0.00 41.46 2.85
4792 5176 1.587043 GAAACTTGGCTCCGGGCTTC 61.587 60.000 13.58 6.51 41.46 3.86
4793 5177 1.603739 GAAACTTGGCTCCGGGCTT 60.604 57.895 13.58 1.35 41.46 4.35
4794 5178 2.034221 GAAACTTGGCTCCGGGCT 59.966 61.111 13.58 0.00 41.46 5.19
4795 5179 2.282180 TGAAACTTGGCTCCGGGC 60.282 61.111 0.00 3.56 40.90 6.13
4796 5180 0.035056 ATCTGAAACTTGGCTCCGGG 60.035 55.000 0.00 0.00 0.00 5.73
4797 5181 1.089920 CATCTGAAACTTGGCTCCGG 58.910 55.000 0.00 0.00 0.00 5.14
4798 5182 2.099141 TCATCTGAAACTTGGCTCCG 57.901 50.000 0.00 0.00 0.00 4.63
4799 5183 2.686915 CCATCATCTGAAACTTGGCTCC 59.313 50.000 0.00 0.00 0.00 4.70
4800 5184 2.686915 CCCATCATCTGAAACTTGGCTC 59.313 50.000 0.00 0.00 0.00 4.70
4801 5185 2.731572 CCCATCATCTGAAACTTGGCT 58.268 47.619 0.00 0.00 0.00 4.75
4802 5186 1.135721 GCCCATCATCTGAAACTTGGC 59.864 52.381 0.00 0.00 0.00 4.52
4803 5187 1.753073 GGCCCATCATCTGAAACTTGG 59.247 52.381 0.00 0.00 0.00 3.61
4804 5188 2.426024 CTGGCCCATCATCTGAAACTTG 59.574 50.000 0.00 0.00 0.00 3.16
4805 5189 2.309755 TCTGGCCCATCATCTGAAACTT 59.690 45.455 0.00 0.00 0.00 2.66
4806 5190 1.918262 TCTGGCCCATCATCTGAAACT 59.082 47.619 0.00 0.00 0.00 2.66
4807 5191 2.092753 TCTCTGGCCCATCATCTGAAAC 60.093 50.000 0.00 0.00 0.00 2.78
4808 5192 2.199208 TCTCTGGCCCATCATCTGAAA 58.801 47.619 0.00 0.00 0.00 2.69
4809 5193 1.883678 TCTCTGGCCCATCATCTGAA 58.116 50.000 0.00 0.00 0.00 3.02
4810 5194 1.697982 CATCTCTGGCCCATCATCTGA 59.302 52.381 0.00 0.00 0.00 3.27
4811 5195 1.271434 CCATCTCTGGCCCATCATCTG 60.271 57.143 0.00 0.00 35.23 2.90
4812 5196 1.065647 CCATCTCTGGCCCATCATCT 58.934 55.000 0.00 0.00 35.23 2.90
4813 5197 0.037877 CCCATCTCTGGCCCATCATC 59.962 60.000 0.00 0.00 41.64 2.92
4814 5198 2.077842 GCCCATCTCTGGCCCATCAT 62.078 60.000 0.00 0.00 43.33 2.45
4815 5199 2.760378 GCCCATCTCTGGCCCATCA 61.760 63.158 0.00 0.00 43.33 3.07
4816 5200 2.114838 GCCCATCTCTGGCCCATC 59.885 66.667 0.00 0.00 43.33 3.51
4822 5206 1.828768 GGTCTCAGCCCATCTCTGG 59.171 63.158 0.00 0.00 42.73 3.86
4830 5214 1.674057 CATATCCGGGTCTCAGCCC 59.326 63.158 0.00 0.00 45.21 5.19
4831 5215 1.674057 CCATATCCGGGTCTCAGCC 59.326 63.158 0.00 0.00 0.00 4.85
4832 5216 1.004440 GCCATATCCGGGTCTCAGC 60.004 63.158 0.00 0.00 0.00 4.26
4833 5217 1.051812 AAGCCATATCCGGGTCTCAG 58.948 55.000 0.00 0.00 35.11 3.35
4834 5218 2.391926 TAAGCCATATCCGGGTCTCA 57.608 50.000 0.00 0.00 35.11 3.27
4835 5219 3.665190 CTTTAAGCCATATCCGGGTCTC 58.335 50.000 0.00 0.00 35.11 3.36
4836 5220 2.224548 GCTTTAAGCCATATCCGGGTCT 60.225 50.000 5.52 0.00 35.11 3.85
4837 5221 2.152016 GCTTTAAGCCATATCCGGGTC 58.848 52.381 5.52 0.00 35.11 4.46
4838 5222 2.271944 GCTTTAAGCCATATCCGGGT 57.728 50.000 5.52 0.00 38.81 5.28
4849 5233 6.737254 TGATTGTAACTACAGGCTTTAAGC 57.263 37.500 8.66 8.66 41.46 3.09
4850 5234 8.730680 ACAATGATTGTAACTACAGGCTTTAAG 58.269 33.333 9.41 0.00 43.27 1.85
4851 5235 8.630054 ACAATGATTGTAACTACAGGCTTTAA 57.370 30.769 9.41 0.00 43.27 1.52
4852 5236 8.630054 AACAATGATTGTAACTACAGGCTTTA 57.370 30.769 11.70 0.00 44.59 1.85
4853 5237 7.524717 AACAATGATTGTAACTACAGGCTTT 57.475 32.000 11.70 0.00 44.59 3.51
4854 5238 8.807948 ATAACAATGATTGTAACTACAGGCTT 57.192 30.769 11.70 0.00 44.59 4.35
4855 5239 9.547753 CTATAACAATGATTGTAACTACAGGCT 57.452 33.333 11.70 0.00 44.59 4.58
4856 5240 9.326413 ACTATAACAATGATTGTAACTACAGGC 57.674 33.333 11.70 0.00 44.59 4.85
4874 5258 8.680903 GCCTTACACTACAAGTCTACTATAACA 58.319 37.037 0.00 0.00 0.00 2.41
4875 5259 8.680903 TGCCTTACACTACAAGTCTACTATAAC 58.319 37.037 0.00 0.00 0.00 1.89
4876 5260 8.812513 TGCCTTACACTACAAGTCTACTATAA 57.187 34.615 0.00 0.00 0.00 0.98
4877 5261 8.812513 TTGCCTTACACTACAAGTCTACTATA 57.187 34.615 0.00 0.00 0.00 1.31
4878 5262 7.713734 TTGCCTTACACTACAAGTCTACTAT 57.286 36.000 0.00 0.00 0.00 2.12
4879 5263 7.154435 CTTGCCTTACACTACAAGTCTACTA 57.846 40.000 0.00 0.00 35.81 1.82
4880 5264 6.026947 CTTGCCTTACACTACAAGTCTACT 57.973 41.667 0.00 0.00 35.81 2.57
4886 5270 7.435068 AACAATACTTGCCTTACACTACAAG 57.565 36.000 0.00 0.00 43.99 3.16
4887 5271 7.811117 AAACAATACTTGCCTTACACTACAA 57.189 32.000 0.00 0.00 0.00 2.41
4888 5272 8.369424 TCTAAACAATACTTGCCTTACACTACA 58.631 33.333 0.00 0.00 0.00 2.74
4889 5273 8.767478 TCTAAACAATACTTGCCTTACACTAC 57.233 34.615 0.00 0.00 0.00 2.73
4890 5274 8.591072 ACTCTAAACAATACTTGCCTTACACTA 58.409 33.333 0.00 0.00 0.00 2.74
4891 5275 7.450903 ACTCTAAACAATACTTGCCTTACACT 58.549 34.615 0.00 0.00 0.00 3.55
4892 5276 7.148457 GGACTCTAAACAATACTTGCCTTACAC 60.148 40.741 0.00 0.00 0.00 2.90
4893 5277 6.877322 GGACTCTAAACAATACTTGCCTTACA 59.123 38.462 0.00 0.00 0.00 2.41
4894 5278 6.035758 CGGACTCTAAACAATACTTGCCTTAC 59.964 42.308 0.00 0.00 0.00 2.34
4895 5279 6.071221 TCGGACTCTAAACAATACTTGCCTTA 60.071 38.462 0.00 0.00 0.00 2.69
4896 5280 4.935808 CGGACTCTAAACAATACTTGCCTT 59.064 41.667 0.00 0.00 0.00 4.35
4897 5281 4.222145 TCGGACTCTAAACAATACTTGCCT 59.778 41.667 0.00 0.00 0.00 4.75
4898 5282 4.501071 TCGGACTCTAAACAATACTTGCC 58.499 43.478 0.00 0.00 0.00 4.52
4899 5283 4.033014 GCTCGGACTCTAAACAATACTTGC 59.967 45.833 0.00 0.00 0.00 4.01
4900 5284 4.567159 GGCTCGGACTCTAAACAATACTTG 59.433 45.833 0.00 0.00 0.00 3.16
4901 5285 4.677250 CGGCTCGGACTCTAAACAATACTT 60.677 45.833 0.00 0.00 0.00 2.24
4902 5286 3.181489 CGGCTCGGACTCTAAACAATACT 60.181 47.826 0.00 0.00 0.00 2.12
4903 5287 3.114065 CGGCTCGGACTCTAAACAATAC 58.886 50.000 0.00 0.00 0.00 1.89
4904 5288 3.431922 CGGCTCGGACTCTAAACAATA 57.568 47.619 0.00 0.00 0.00 1.90
4905 5289 2.295253 CGGCTCGGACTCTAAACAAT 57.705 50.000 0.00 0.00 0.00 2.71
4906 5290 3.806591 CGGCTCGGACTCTAAACAA 57.193 52.632 0.00 0.00 0.00 2.83
4921 5305 4.327885 CTCATAAGAGCGTCCGGC 57.672 61.111 0.00 0.00 44.05 6.13
4929 5313 2.029666 CCGGCCGGCTCATAAGAG 59.970 66.667 34.96 3.26 44.96 2.85
4930 5314 3.546543 CCCGGCCGGCTCATAAGA 61.547 66.667 39.46 0.00 0.00 2.10
4931 5315 3.546543 TCCCGGCCGGCTCATAAG 61.547 66.667 39.46 22.98 0.00 1.73
4932 5316 3.857038 GTCCCGGCCGGCTCATAA 61.857 66.667 39.46 15.60 0.00 1.90
4933 5317 4.853142 AGTCCCGGCCGGCTCATA 62.853 66.667 39.46 17.51 0.00 2.15
4937 5321 4.772231 TTAGAGTCCCGGCCGGCT 62.772 66.667 39.46 30.53 0.00 5.52
4938 5322 4.222847 CTTAGAGTCCCGGCCGGC 62.223 72.222 39.46 26.05 0.00 6.13
4939 5323 3.537874 CCTTAGAGTCCCGGCCGG 61.538 72.222 37.99 37.99 0.00 6.13
4940 5324 3.537874 CCCTTAGAGTCCCGGCCG 61.538 72.222 21.04 21.04 0.00 6.13
4941 5325 3.862991 GCCCTTAGAGTCCCGGCC 61.863 72.222 0.00 0.00 33.30 6.13
4942 5326 2.764547 AGCCCTTAGAGTCCCGGC 60.765 66.667 0.00 0.00 40.03 6.13
4943 5327 3.095347 GCAGCCCTTAGAGTCCCGG 62.095 68.421 0.00 0.00 0.00 5.73
4944 5328 2.060980 AGCAGCCCTTAGAGTCCCG 61.061 63.158 0.00 0.00 0.00 5.14
4945 5329 1.524482 CAGCAGCCCTTAGAGTCCC 59.476 63.158 0.00 0.00 0.00 4.46
4946 5330 1.524482 CCAGCAGCCCTTAGAGTCC 59.476 63.158 0.00 0.00 0.00 3.85
4947 5331 1.524482 CCCAGCAGCCCTTAGAGTC 59.476 63.158 0.00 0.00 0.00 3.36
4948 5332 2.674220 GCCCAGCAGCCCTTAGAGT 61.674 63.158 0.00 0.00 0.00 3.24
4949 5333 2.191641 GCCCAGCAGCCCTTAGAG 59.808 66.667 0.00 0.00 0.00 2.43
4950 5334 3.785859 CGCCCAGCAGCCCTTAGA 61.786 66.667 0.00 0.00 0.00 2.10
4951 5335 4.101448 ACGCCCAGCAGCCCTTAG 62.101 66.667 0.00 0.00 0.00 2.18
4952 5336 4.096003 GACGCCCAGCAGCCCTTA 62.096 66.667 0.00 0.00 0.00 2.69
4965 5349 3.368531 CCTTTATATAGGGAGGCTGACGC 60.369 52.174 0.00 0.00 0.00 5.19
4966 5350 4.457834 CCTTTATATAGGGAGGCTGACG 57.542 50.000 0.00 0.00 0.00 4.35
4995 5379 3.810896 GCCCTTAAACCGCTGCCG 61.811 66.667 0.00 0.00 0.00 5.69
4996 5380 3.810896 CGCCCTTAAACCGCTGCC 61.811 66.667 0.00 0.00 0.00 4.85
4997 5381 2.744709 TCGCCCTTAAACCGCTGC 60.745 61.111 0.00 0.00 0.00 5.25
4998 5382 1.231958 TTGTCGCCCTTAAACCGCTG 61.232 55.000 0.00 0.00 0.00 5.18
4999 5383 1.071814 TTGTCGCCCTTAAACCGCT 59.928 52.632 0.00 0.00 0.00 5.52
5000 5384 1.208358 GTTGTCGCCCTTAAACCGC 59.792 57.895 0.00 0.00 0.00 5.68
5001 5385 0.945813 TTGTTGTCGCCCTTAAACCG 59.054 50.000 0.00 0.00 0.00 4.44
5002 5386 2.817844 AGATTGTTGTCGCCCTTAAACC 59.182 45.455 0.00 0.00 0.00 3.27
5003 5387 5.616488 TTAGATTGTTGTCGCCCTTAAAC 57.384 39.130 0.00 0.00 0.00 2.01
5004 5388 5.064198 CGATTAGATTGTTGTCGCCCTTAAA 59.936 40.000 0.00 0.00 0.00 1.52
5005 5389 4.569162 CGATTAGATTGTTGTCGCCCTTAA 59.431 41.667 0.00 0.00 0.00 1.85
5006 5390 4.116961 CGATTAGATTGTTGTCGCCCTTA 58.883 43.478 0.00 0.00 0.00 2.69
5007 5391 2.936498 CGATTAGATTGTTGTCGCCCTT 59.064 45.455 0.00 0.00 0.00 3.95
5008 5392 2.167693 TCGATTAGATTGTTGTCGCCCT 59.832 45.455 0.00 0.00 32.74 5.19
5009 5393 2.540101 CTCGATTAGATTGTTGTCGCCC 59.460 50.000 0.00 0.00 32.74 6.13
5010 5394 3.444916 TCTCGATTAGATTGTTGTCGCC 58.555 45.455 0.00 0.00 32.74 5.54
5011 5395 3.060873 GCTCTCGATTAGATTGTTGTCGC 60.061 47.826 0.00 0.00 32.41 5.19
5012 5396 3.487574 GGCTCTCGATTAGATTGTTGTCG 59.512 47.826 0.00 0.00 32.41 4.35
5013 5397 3.487574 CGGCTCTCGATTAGATTGTTGTC 59.512 47.826 0.00 0.00 42.43 3.18
5014 5398 3.448686 CGGCTCTCGATTAGATTGTTGT 58.551 45.455 0.00 0.00 42.43 3.32
5015 5399 2.797156 CCGGCTCTCGATTAGATTGTTG 59.203 50.000 0.00 0.00 42.43 3.33
5016 5400 2.224066 CCCGGCTCTCGATTAGATTGTT 60.224 50.000 0.00 0.00 42.43 2.83
5017 5401 1.341531 CCCGGCTCTCGATTAGATTGT 59.658 52.381 0.00 0.00 42.43 2.71
5018 5402 1.937108 GCCCGGCTCTCGATTAGATTG 60.937 57.143 0.71 0.00 42.43 2.67
5019 5403 0.318762 GCCCGGCTCTCGATTAGATT 59.681 55.000 0.71 0.00 42.43 2.40
5020 5404 0.827925 TGCCCGGCTCTCGATTAGAT 60.828 55.000 11.61 0.00 42.43 1.98
5021 5405 0.827925 ATGCCCGGCTCTCGATTAGA 60.828 55.000 11.61 0.00 42.43 2.10
5022 5406 0.888619 TATGCCCGGCTCTCGATTAG 59.111 55.000 11.61 0.00 42.43 1.73
5023 5407 0.888619 CTATGCCCGGCTCTCGATTA 59.111 55.000 11.61 0.00 42.43 1.75
5024 5408 1.668294 CTATGCCCGGCTCTCGATT 59.332 57.895 11.61 0.00 42.43 3.34
5025 5409 2.936912 GCTATGCCCGGCTCTCGAT 61.937 63.158 11.61 0.00 42.43 3.59
5026 5410 3.606662 GCTATGCCCGGCTCTCGA 61.607 66.667 11.61 0.00 42.43 4.04
5027 5411 3.610669 AGCTATGCCCGGCTCTCG 61.611 66.667 11.61 0.00 32.98 4.04
5028 5412 2.030262 CAGCTATGCCCGGCTCTC 59.970 66.667 11.61 0.00 36.59 3.20
5029 5413 1.048724 TAACAGCTATGCCCGGCTCT 61.049 55.000 11.61 0.34 36.59 4.09
5030 5414 0.601311 CTAACAGCTATGCCCGGCTC 60.601 60.000 11.61 0.00 36.59 4.70
5031 5415 1.447643 CTAACAGCTATGCCCGGCT 59.552 57.895 11.61 0.00 39.60 5.52
5032 5416 2.254464 GCTAACAGCTATGCCCGGC 61.254 63.158 1.04 1.04 38.45 6.13
5033 5417 4.049393 GCTAACAGCTATGCCCGG 57.951 61.111 0.00 0.00 38.45 5.73
5042 5426 2.317149 ATCGCCAGGGAGCTAACAGC 62.317 60.000 0.00 0.00 42.84 4.40
5043 5427 0.249657 GATCGCCAGGGAGCTAACAG 60.250 60.000 0.00 0.00 0.00 3.16
5044 5428 1.823295 GATCGCCAGGGAGCTAACA 59.177 57.895 0.00 0.00 0.00 2.41
5045 5429 1.300233 CGATCGCCAGGGAGCTAAC 60.300 63.158 0.26 0.00 0.00 2.34
5046 5430 0.466739 TACGATCGCCAGGGAGCTAA 60.467 55.000 16.60 0.00 0.00 3.09
5047 5431 0.466739 TTACGATCGCCAGGGAGCTA 60.467 55.000 16.60 0.00 0.00 3.32
5048 5432 1.756950 TTACGATCGCCAGGGAGCT 60.757 57.895 16.60 0.00 0.00 4.09
5049 5433 1.591863 GTTACGATCGCCAGGGAGC 60.592 63.158 16.60 0.00 0.00 4.70
5050 5434 1.067582 GGTTACGATCGCCAGGGAG 59.932 63.158 16.60 0.00 0.00 4.30
5051 5435 2.428925 GGGTTACGATCGCCAGGGA 61.429 63.158 16.60 0.00 0.00 4.20
5052 5436 2.108362 GGGTTACGATCGCCAGGG 59.892 66.667 16.60 0.00 0.00 4.45
5053 5437 2.108362 GGGGTTACGATCGCCAGG 59.892 66.667 16.60 0.00 37.75 4.45
5054 5438 2.897207 TGGGGTTACGATCGCCAG 59.103 61.111 16.60 0.00 41.71 4.85
5055 5439 1.683025 TCTGGGGTTACGATCGCCA 60.683 57.895 16.60 12.94 43.75 5.69
5056 5440 1.227176 GTCTGGGGTTACGATCGCC 60.227 63.158 16.60 8.46 38.21 5.54
5057 5441 0.108520 TTGTCTGGGGTTACGATCGC 60.109 55.000 16.60 0.00 0.00 4.58
5058 5442 2.596904 ATTGTCTGGGGTTACGATCG 57.403 50.000 14.88 14.88 0.00 3.69
5059 5443 4.761975 TGTTATTGTCTGGGGTTACGATC 58.238 43.478 0.00 0.00 0.00 3.69
5060 5444 4.829872 TGTTATTGTCTGGGGTTACGAT 57.170 40.909 0.00 0.00 0.00 3.73
5061 5445 4.468510 AGATGTTATTGTCTGGGGTTACGA 59.531 41.667 0.00 0.00 0.00 3.43
5062 5446 4.766375 AGATGTTATTGTCTGGGGTTACG 58.234 43.478 0.00 0.00 0.00 3.18
5063 5447 5.741011 TGAGATGTTATTGTCTGGGGTTAC 58.259 41.667 0.00 0.00 0.00 2.50
5064 5448 6.381498 TTGAGATGTTATTGTCTGGGGTTA 57.619 37.500 0.00 0.00 0.00 2.85
5065 5449 4.927267 TGAGATGTTATTGTCTGGGGTT 57.073 40.909 0.00 0.00 0.00 4.11
5066 5450 4.927267 TTGAGATGTTATTGTCTGGGGT 57.073 40.909 0.00 0.00 0.00 4.95
5067 5451 5.124457 CAGTTTGAGATGTTATTGTCTGGGG 59.876 44.000 0.00 0.00 0.00 4.96
5068 5452 5.124457 CCAGTTTGAGATGTTATTGTCTGGG 59.876 44.000 0.00 0.00 36.21 4.45
5069 5453 5.939883 TCCAGTTTGAGATGTTATTGTCTGG 59.060 40.000 0.00 0.00 39.70 3.86
5070 5454 6.401474 CGTCCAGTTTGAGATGTTATTGTCTG 60.401 42.308 0.00 0.00 0.00 3.51
5071 5455 5.639506 CGTCCAGTTTGAGATGTTATTGTCT 59.360 40.000 0.00 0.00 0.00 3.41
5072 5456 5.408604 ACGTCCAGTTTGAGATGTTATTGTC 59.591 40.000 0.00 0.00 0.00 3.18
5073 5457 5.305585 ACGTCCAGTTTGAGATGTTATTGT 58.694 37.500 0.00 0.00 0.00 2.71
5074 5458 5.862924 ACGTCCAGTTTGAGATGTTATTG 57.137 39.130 0.00 0.00 0.00 1.90
5075 5459 6.106673 CCTACGTCCAGTTTGAGATGTTATT 58.893 40.000 0.00 0.00 34.21 1.40
5076 5460 5.661458 CCTACGTCCAGTTTGAGATGTTAT 58.339 41.667 0.00 0.00 34.21 1.89
5077 5461 4.619863 GCCTACGTCCAGTTTGAGATGTTA 60.620 45.833 0.00 0.00 34.21 2.41
5078 5462 3.864921 GCCTACGTCCAGTTTGAGATGTT 60.865 47.826 0.00 0.00 34.21 2.71
5079 5463 2.353803 GCCTACGTCCAGTTTGAGATGT 60.354 50.000 0.00 0.00 36.28 3.06
5080 5464 2.093973 AGCCTACGTCCAGTTTGAGATG 60.094 50.000 0.00 0.00 0.00 2.90
5081 5465 2.180276 AGCCTACGTCCAGTTTGAGAT 58.820 47.619 0.00 0.00 0.00 2.75
5082 5466 1.629043 AGCCTACGTCCAGTTTGAGA 58.371 50.000 0.00 0.00 0.00 3.27
5083 5467 2.457366 AAGCCTACGTCCAGTTTGAG 57.543 50.000 0.00 0.00 0.00 3.02
5084 5468 2.922740 AAAGCCTACGTCCAGTTTGA 57.077 45.000 0.00 0.00 0.00 2.69
5085 5469 3.187842 GGTAAAAGCCTACGTCCAGTTTG 59.812 47.826 0.00 0.00 0.00 2.93
5086 5470 3.072038 AGGTAAAAGCCTACGTCCAGTTT 59.928 43.478 0.00 0.00 37.04 2.66
5087 5471 2.636403 AGGTAAAAGCCTACGTCCAGTT 59.364 45.455 0.00 0.00 37.04 3.16
5088 5472 2.254508 AGGTAAAAGCCTACGTCCAGT 58.745 47.619 0.00 0.00 37.04 4.00
5089 5473 3.259902 GAAGGTAAAAGCCTACGTCCAG 58.740 50.000 0.00 0.00 38.03 3.86
5090 5474 2.633967 TGAAGGTAAAAGCCTACGTCCA 59.366 45.455 0.00 0.00 38.03 4.02
5091 5475 2.998670 GTGAAGGTAAAAGCCTACGTCC 59.001 50.000 0.00 0.00 38.03 4.79
5092 5476 2.998670 GGTGAAGGTAAAAGCCTACGTC 59.001 50.000 0.00 0.00 38.03 4.34
5093 5477 2.611224 CGGTGAAGGTAAAAGCCTACGT 60.611 50.000 0.00 0.00 38.03 3.57
5094 5478 1.997606 CGGTGAAGGTAAAAGCCTACG 59.002 52.381 0.00 0.00 38.03 3.51
5095 5479 3.049708 ACGGTGAAGGTAAAAGCCTAC 57.950 47.619 0.00 0.00 38.03 3.18
5096 5480 4.322953 CCTTACGGTGAAGGTAAAAGCCTA 60.323 45.833 5.17 0.00 41.09 3.93
5097 5481 3.558533 CCTTACGGTGAAGGTAAAAGCCT 60.559 47.826 5.17 0.00 41.09 4.58
5098 5482 2.745821 CCTTACGGTGAAGGTAAAAGCC 59.254 50.000 5.17 0.00 41.09 4.35
5099 5483 2.745821 CCCTTACGGTGAAGGTAAAAGC 59.254 50.000 10.90 0.00 44.02 3.51
5100 5484 3.340928 CCCCTTACGGTGAAGGTAAAAG 58.659 50.000 10.90 0.00 44.02 2.27
5101 5485 2.552809 GCCCCTTACGGTGAAGGTAAAA 60.553 50.000 10.90 0.00 44.02 1.52
5102 5486 1.003464 GCCCCTTACGGTGAAGGTAAA 59.997 52.381 10.90 0.00 44.02 2.01
5103 5487 0.614812 GCCCCTTACGGTGAAGGTAA 59.385 55.000 10.90 0.00 44.02 2.85
5104 5488 1.266867 GGCCCCTTACGGTGAAGGTA 61.267 60.000 10.90 0.00 44.02 3.08
5105 5489 2.599757 GGCCCCTTACGGTGAAGGT 61.600 63.158 10.90 0.00 44.02 3.50
5106 5490 2.271173 GGCCCCTTACGGTGAAGG 59.729 66.667 0.00 6.14 44.96 3.46
5107 5491 2.125269 CGGCCCCTTACGGTGAAG 60.125 66.667 0.00 0.00 0.00 3.02
5108 5492 2.215625 TTCGGCCCCTTACGGTGAA 61.216 57.895 0.00 0.00 0.00 3.18
5109 5493 2.604079 TTCGGCCCCTTACGGTGA 60.604 61.111 0.00 0.00 0.00 4.02
5110 5494 2.435410 GTTCGGCCCCTTACGGTG 60.435 66.667 0.00 0.00 0.00 4.94
5111 5495 3.709633 GGTTCGGCCCCTTACGGT 61.710 66.667 0.00 0.00 0.00 4.83
5112 5496 3.675619 CTGGTTCGGCCCCTTACGG 62.676 68.421 0.00 0.00 36.04 4.02
5113 5497 1.606885 TACTGGTTCGGCCCCTTACG 61.607 60.000 0.00 0.00 36.04 3.18
5114 5498 0.835276 ATACTGGTTCGGCCCCTTAC 59.165 55.000 0.00 0.00 36.04 2.34
5115 5499 3.327744 ATACTGGTTCGGCCCCTTA 57.672 52.632 0.00 0.00 36.04 2.69
5116 5500 4.164264 ATACTGGTTCGGCCCCTT 57.836 55.556 0.00 0.00 36.04 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.