Multiple sequence alignment - TraesCS5D01G367000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G367000 chr5D 100.000 2977 0 0 1 2977 443514386 443511410 0.000000e+00 5498.0
1 TraesCS5D01G367000 chr5D 98.713 544 6 1 1 543 45655305 45655848 0.000000e+00 965.0
2 TraesCS5D01G367000 chr5D 89.597 769 61 14 1 760 456026261 456027019 0.000000e+00 959.0
3 TraesCS5D01G367000 chr5D 83.088 136 17 4 2176 2311 417945602 417945731 5.210000e-23 119.0
4 TraesCS5D01G367000 chr5A 86.433 1253 95 36 1314 2513 559784682 559783452 0.000000e+00 1303.0
5 TraesCS5D01G367000 chr5A 95.681 764 21 8 1 760 680599550 680598795 0.000000e+00 1218.0
6 TraesCS5D01G367000 chr5A 94.670 469 19 3 2510 2977 28649147 28648684 0.000000e+00 723.0
7 TraesCS5D01G367000 chr5A 92.063 252 18 2 761 1011 559786423 559786173 1.310000e-93 353.0
8 TraesCS5D01G367000 chr5A 87.296 307 18 8 1018 1308 559785180 559784879 6.150000e-87 331.0
9 TraesCS5D01G367000 chr3D 96.494 770 17 6 1 760 302922235 302923004 0.000000e+00 1264.0
10 TraesCS5D01G367000 chr3D 96.461 763 18 5 1 761 442859832 442860587 0.000000e+00 1251.0
11 TraesCS5D01G367000 chr2D 96.234 770 19 6 1 760 572697793 572697024 0.000000e+00 1253.0
12 TraesCS5D01G367000 chr2D 93.498 769 14 6 1 760 382438403 382439144 0.000000e+00 1110.0
13 TraesCS5D01G367000 chr2D 95.957 470 17 2 2510 2977 427553064 427553533 0.000000e+00 761.0
14 TraesCS5D01G367000 chr2D 95.339 472 13 6 2508 2977 612613924 612614388 0.000000e+00 741.0
15 TraesCS5D01G367000 chr6B 96.053 760 27 3 3 760 36200474 36201232 0.000000e+00 1234.0
16 TraesCS5D01G367000 chr6D 95.207 772 25 7 1 760 22111103 22110332 0.000000e+00 1210.0
17 TraesCS5D01G367000 chr6D 95.106 470 20 3 2510 2977 166252324 166252792 0.000000e+00 737.0
18 TraesCS5D01G367000 chr4D 98.713 544 6 1 1 543 437728003 437728546 0.000000e+00 965.0
19 TraesCS5D01G367000 chr2B 94.904 471 22 2 2509 2977 540421755 540422225 0.000000e+00 736.0
20 TraesCS5D01G367000 chr2B 83.721 129 17 3 1314 1442 672523917 672524041 5.210000e-23 119.0
21 TraesCS5D01G367000 chr2B 91.549 71 6 0 1314 1384 764532887 764532817 6.790000e-17 99.0
22 TraesCS5D01G367000 chr2B 85.542 83 9 2 1314 1396 764873101 764873180 1.900000e-12 84.2
23 TraesCS5D01G367000 chr1B 94.456 469 22 4 2510 2977 611696775 611696310 0.000000e+00 719.0
24 TraesCS5D01G367000 chr1B 94.093 474 25 3 2506 2977 28287973 28288445 0.000000e+00 717.0
25 TraesCS5D01G367000 chr1B 82.400 125 15 6 1314 1434 470550174 470550295 5.250000e-18 102.0
26 TraesCS5D01G367000 chr3B 94.280 472 21 4 2510 2977 313123376 313122907 0.000000e+00 717.0
27 TraesCS5D01G367000 chr3B 94.068 472 22 4 2510 2977 313133514 313133045 0.000000e+00 712.0
28 TraesCS5D01G367000 chr3B 92.424 66 5 0 1315 1380 11666143 11666208 8.780000e-16 95.3
29 TraesCS5D01G367000 chr7B 85.356 519 63 10 249 760 89566359 89566871 2.630000e-145 525.0
30 TraesCS5D01G367000 chr7B 86.923 130 15 1 1314 1443 528769263 528769390 8.600000e-31 145.0
31 TraesCS5D01G367000 chr6A 83.471 121 15 4 761 880 602159850 602159734 1.130000e-19 108.0
32 TraesCS5D01G367000 chr6A 78.344 157 32 2 1810 1965 601236916 601237071 1.890000e-17 100.0
33 TraesCS5D01G367000 chr4B 87.097 93 10 2 1315 1406 536408851 536408942 1.460000e-18 104.0
34 TraesCS5D01G367000 chr7D 82.500 120 15 4 1314 1430 500632535 500632651 1.890000e-17 100.0
35 TraesCS5D01G367000 chr3A 90.141 71 6 1 1314 1383 332552013 332551943 1.140000e-14 91.6
36 TraesCS5D01G367000 chr3A 88.732 71 7 1 1314 1383 332548304 332548234 5.290000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G367000 chr5D 443511410 443514386 2976 True 5498.000000 5498 100.000000 1 2977 1 chr5D.!!$R1 2976
1 TraesCS5D01G367000 chr5D 45655305 45655848 543 False 965.000000 965 98.713000 1 543 1 chr5D.!!$F1 542
2 TraesCS5D01G367000 chr5D 456026261 456027019 758 False 959.000000 959 89.597000 1 760 1 chr5D.!!$F3 759
3 TraesCS5D01G367000 chr5A 680598795 680599550 755 True 1218.000000 1218 95.681000 1 760 1 chr5A.!!$R2 759
4 TraesCS5D01G367000 chr5A 559783452 559786423 2971 True 662.333333 1303 88.597333 761 2513 3 chr5A.!!$R3 1752
5 TraesCS5D01G367000 chr3D 302922235 302923004 769 False 1264.000000 1264 96.494000 1 760 1 chr3D.!!$F1 759
6 TraesCS5D01G367000 chr3D 442859832 442860587 755 False 1251.000000 1251 96.461000 1 761 1 chr3D.!!$F2 760
7 TraesCS5D01G367000 chr2D 572697024 572697793 769 True 1253.000000 1253 96.234000 1 760 1 chr2D.!!$R1 759
8 TraesCS5D01G367000 chr2D 382438403 382439144 741 False 1110.000000 1110 93.498000 1 760 1 chr2D.!!$F1 759
9 TraesCS5D01G367000 chr6B 36200474 36201232 758 False 1234.000000 1234 96.053000 3 760 1 chr6B.!!$F1 757
10 TraesCS5D01G367000 chr6D 22110332 22111103 771 True 1210.000000 1210 95.207000 1 760 1 chr6D.!!$R1 759
11 TraesCS5D01G367000 chr4D 437728003 437728546 543 False 965.000000 965 98.713000 1 543 1 chr4D.!!$F1 542
12 TraesCS5D01G367000 chr7B 89566359 89566871 512 False 525.000000 525 85.356000 249 760 1 chr7B.!!$F1 511


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 982 0.108585 ATTGATCGGAATCGGGTGGG 59.891 55.0 0.0 0.0 34.39 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 3253 0.034896 AGTGCGACGACCCTCATTTT 59.965 50.0 0.0 0.0 0.0 1.82 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
533 542 2.435234 CGGACCGGATTTTGGCGA 60.435 61.111 9.46 0.00 0.00 5.54
841 875 4.821589 CTGTTCCGGCGCCTCTCC 62.822 72.222 26.68 10.48 0.00 3.71
874 908 2.483745 CTGCCATGCAAGCTCGTG 59.516 61.111 12.69 0.00 38.41 4.35
887 921 1.540607 GCTCGTGGTACGCATCGATG 61.541 60.000 21.27 21.27 42.21 3.84
918 952 2.005451 CGTGCCCTCTTGATTTCTCTG 58.995 52.381 0.00 0.00 0.00 3.35
923 957 1.932511 CCTCTTGATTTCTCTGCTCGC 59.067 52.381 0.00 0.00 0.00 5.03
929 963 0.532573 ATTTCTCTGCTCGCTTCCGA 59.467 50.000 0.00 0.00 42.01 4.55
947 981 1.512926 GATTGATCGGAATCGGGTGG 58.487 55.000 0.00 0.00 34.39 4.61
948 982 0.108585 ATTGATCGGAATCGGGTGGG 59.891 55.000 0.00 0.00 34.39 4.61
970 1004 2.606308 CGATGAACTAATCCCCCGTACG 60.606 54.545 8.69 8.69 0.00 3.67
974 1008 0.826062 ACTAATCCCCCGTACGGTTG 59.174 55.000 31.24 21.52 0.00 3.77
976 1010 1.970352 TAATCCCCCGTACGGTTGGC 61.970 60.000 31.24 0.00 0.00 4.52
986 1020 3.777925 CGGTTGGCTCGCTCGTTG 61.778 66.667 0.00 0.00 0.00 4.10
1039 2060 2.669569 GCGCCAAGTGCTTCCTGA 60.670 61.111 0.00 0.00 38.05 3.86
1041 2062 1.589716 GCGCCAAGTGCTTCCTGATT 61.590 55.000 0.00 0.00 38.05 2.57
1108 2129 1.224315 CAATGGATCCACCTCCGCA 59.776 57.895 18.99 0.00 38.21 5.69
1119 2140 2.653448 CTCCGCAGCGACGAGATG 60.653 66.667 18.75 0.00 39.70 2.90
1155 2181 1.182667 TCGATCGAGCCTCCTTTTCA 58.817 50.000 15.15 0.00 0.00 2.69
1158 2184 2.939103 CGATCGAGCCTCCTTTTCAATT 59.061 45.455 10.26 0.00 0.00 2.32
1159 2185 3.242543 CGATCGAGCCTCCTTTTCAATTG 60.243 47.826 10.26 0.00 0.00 2.32
1190 2216 0.821517 GGGGGCCAATTAGTTTTCCG 59.178 55.000 4.39 0.00 0.00 4.30
1201 2227 7.385478 GCCAATTAGTTTTCCGTTGGATTTTTA 59.615 33.333 6.62 0.00 41.36 1.52
1210 2236 6.315091 TCCGTTGGATTTTTATTTTCACGA 57.685 33.333 0.00 0.00 0.00 4.35
1214 2240 9.130312 CCGTTGGATTTTTATTTTCACGATAAA 57.870 29.630 0.00 0.00 0.00 1.40
1285 2316 9.923143 TTACTAATCATTACCACCGAATATCAG 57.077 33.333 0.00 0.00 0.00 2.90
1286 2317 7.963532 ACTAATCATTACCACCGAATATCAGT 58.036 34.615 0.00 0.00 0.00 3.41
1288 2319 7.730364 AATCATTACCACCGAATATCAGTTC 57.270 36.000 0.00 0.00 0.00 3.01
1289 2320 5.607477 TCATTACCACCGAATATCAGTTCC 58.393 41.667 0.00 0.00 0.00 3.62
1293 2330 2.470821 CACCGAATATCAGTTCCCGAC 58.529 52.381 0.00 0.00 0.00 4.79
1308 2345 0.747255 CCGACCTCATCTACACCCTG 59.253 60.000 0.00 0.00 0.00 4.45
1310 2347 1.135139 CGACCTCATCTACACCCTGTG 59.865 57.143 0.00 0.00 39.75 3.66
1311 2348 2.457598 GACCTCATCTACACCCTGTGA 58.542 52.381 0.49 0.00 36.96 3.58
1331 2559 2.624316 ACAGATGTTCAAATGCGCTG 57.376 45.000 9.73 0.00 0.00 5.18
1334 2562 3.192001 ACAGATGTTCAAATGCGCTGAAT 59.808 39.130 9.73 0.00 35.36 2.57
1344 2572 0.248825 TGCGCTGAATTTTTGCACGT 60.249 45.000 9.73 0.00 0.00 4.49
1349 2577 3.668191 CGCTGAATTTTTGCACGTACATT 59.332 39.130 0.00 0.00 0.00 2.71
1370 2598 5.591643 TTACGAACTCAAGCATCTTTCAC 57.408 39.130 0.00 0.00 0.00 3.18
1371 2599 3.733337 ACGAACTCAAGCATCTTTCACT 58.267 40.909 0.00 0.00 0.00 3.41
1442 2670 0.322456 CTGTTCATTCCCGGGCTCAA 60.322 55.000 18.49 5.36 0.00 3.02
1444 2672 1.376683 TTCATTCCCGGGCTCAACG 60.377 57.895 18.49 0.00 0.00 4.10
1445 2673 3.508840 CATTCCCGGGCTCAACGC 61.509 66.667 18.49 0.00 38.13 4.84
1472 2719 5.107065 CGTCCTCATTACCACAAACTTCTTC 60.107 44.000 0.00 0.00 0.00 2.87
1483 2730 2.171341 AACTTCTTCGGCAGGTTCTC 57.829 50.000 0.00 0.00 0.00 2.87
1492 2739 1.004440 GCAGGTTCTCGGAAGCAGT 60.004 57.895 15.11 0.00 0.00 4.40
1524 2771 3.223674 AGGTTTCGTGGTTGGAAATCT 57.776 42.857 0.00 0.00 39.40 2.40
1528 2775 1.234821 TCGTGGTTGGAAATCTGTGC 58.765 50.000 0.00 0.00 0.00 4.57
1529 2776 0.240945 CGTGGTTGGAAATCTGTGCC 59.759 55.000 0.00 0.00 0.00 5.01
1565 2816 2.568612 CTCTCGCAGAACTCGGCA 59.431 61.111 2.83 0.00 36.87 5.69
1590 2841 2.351738 GCCACTTACATGGTGTTCAAGC 60.352 50.000 0.00 0.00 42.28 4.01
1621 2872 3.153919 GTGGGTTCAACAAGCTGGATTA 58.846 45.455 0.00 0.00 0.00 1.75
1637 2888 1.597663 GATTATCCGTTTCAGGTGGCG 59.402 52.381 0.00 0.00 0.00 5.69
1644 2895 1.300620 TTTCAGGTGGCGTCAGTCG 60.301 57.895 0.00 0.00 43.12 4.18
1656 2907 0.392998 GTCAGTCGGCATTGGATGGT 60.393 55.000 0.00 0.00 0.00 3.55
1657 2908 1.134521 GTCAGTCGGCATTGGATGGTA 60.135 52.381 0.00 0.00 0.00 3.25
1658 2909 1.768275 TCAGTCGGCATTGGATGGTAT 59.232 47.619 0.00 0.00 0.00 2.73
1660 2911 1.148310 GTCGGCATTGGATGGTATCG 58.852 55.000 0.00 0.00 0.00 2.92
1682 2933 1.403679 TCAACACGGAAAGTTTGCCTG 59.596 47.619 1.10 3.26 0.00 4.85
1712 2963 2.590092 GAGGTTGGGGATGACGGG 59.410 66.667 0.00 0.00 0.00 5.28
1743 2994 4.884164 GCAAACATATTTGGAGGTCTAGCT 59.116 41.667 0.00 0.00 44.64 3.32
1754 3005 2.774809 GAGGTCTAGCTGGGAGGAAAAT 59.225 50.000 0.00 0.00 0.00 1.82
1758 3009 2.027385 CTAGCTGGGAGGAAAATTGGC 58.973 52.381 0.00 0.00 0.00 4.52
1760 3011 1.948721 GCTGGGAGGAAAATTGGCGG 61.949 60.000 0.00 0.00 0.00 6.13
1801 3052 1.825090 ACTGGCGCAATTCATCTCAA 58.175 45.000 10.83 0.00 0.00 3.02
1802 3053 1.741706 ACTGGCGCAATTCATCTCAAG 59.258 47.619 10.83 0.00 0.00 3.02
1808 3059 3.730061 GCGCAATTCATCTCAAGGACAAG 60.730 47.826 0.30 0.00 0.00 3.16
1821 3072 2.206576 GGACAAGATTGTGCTCCCTT 57.793 50.000 9.65 0.00 44.78 3.95
1836 3087 2.381445 CCTTGGAGAAGGGCTGACT 58.619 57.895 0.00 0.00 44.76 3.41
1854 3105 2.107953 GCTGGATGGAGGTCGAGC 59.892 66.667 6.48 6.48 41.56 5.03
1879 3130 3.576648 GTGAGTTCTACAACGAGGAAGG 58.423 50.000 0.00 0.00 37.61 3.46
1882 3133 0.245539 TTCTACAACGAGGAAGGCGG 59.754 55.000 0.00 0.00 0.00 6.13
1887 3138 4.514577 ACGAGGAAGGCGGCGATG 62.515 66.667 12.98 0.00 0.00 3.84
1902 3153 1.517257 GATGGCGAGGTGTCTGTCG 60.517 63.158 0.00 0.00 39.25 4.35
1907 3158 2.044555 CGAGGTGTCTGTCGGCCTA 61.045 63.158 0.00 0.00 32.40 3.93
1919 3170 0.392461 TCGGCCTAATGCAGACAACC 60.392 55.000 0.00 0.00 43.89 3.77
1937 3189 3.669354 CGGAGGATACAAGAGTGGC 57.331 57.895 0.00 0.00 41.41 5.01
1955 3207 0.534873 GCCTTGTTGTGTTGGGTGTT 59.465 50.000 0.00 0.00 0.00 3.32
1959 3211 2.498644 TGTTGTGTTGGGTGTTGAGA 57.501 45.000 0.00 0.00 0.00 3.27
1970 3222 7.606456 GTGTTGGGTGTTGAGATTAGATCTAAA 59.394 37.037 18.79 0.00 40.38 1.85
1993 3245 2.654749 TGATGTGGACGAGCTTGTAG 57.345 50.000 6.58 0.00 0.00 2.74
2000 3252 1.002251 GGACGAGCTTGTAGGATCGAG 60.002 57.143 6.58 0.00 46.19 4.04
2001 3253 1.941294 GACGAGCTTGTAGGATCGAGA 59.059 52.381 6.58 0.00 46.19 4.04
2033 3285 4.386652 GTCGTCGCACTTTTTCCTACATAA 59.613 41.667 0.00 0.00 0.00 1.90
2107 3362 5.705609 AGATACGCCAGTTTGAATTGTTT 57.294 34.783 0.00 0.00 0.00 2.83
2130 3385 9.209297 GTTTCAAGCAAAACATTCATTAACAAC 57.791 29.630 4.96 0.00 38.68 3.32
2198 3453 9.969001 AGTTTTTGCTATTTATCAGGTACCTAA 57.031 29.630 15.80 0.00 0.00 2.69
2220 3475 4.582701 AAATTGTTTCAGCCGTCAATCA 57.417 36.364 0.00 0.00 31.41 2.57
2233 3488 2.028112 CGTCAATCACCTCTTCCTTCCA 60.028 50.000 0.00 0.00 0.00 3.53
2234 3489 3.369892 CGTCAATCACCTCTTCCTTCCAT 60.370 47.826 0.00 0.00 0.00 3.41
2235 3490 4.141937 CGTCAATCACCTCTTCCTTCCATA 60.142 45.833 0.00 0.00 0.00 2.74
2236 3491 5.453903 CGTCAATCACCTCTTCCTTCCATAT 60.454 44.000 0.00 0.00 0.00 1.78
2237 3492 5.762218 GTCAATCACCTCTTCCTTCCATATG 59.238 44.000 0.00 0.00 0.00 1.78
2259 3514 1.144913 CCTTCCTTCCAACCTCACCAA 59.855 52.381 0.00 0.00 0.00 3.67
2268 3523 5.319043 TCCAACCTCACCAAAGTAGAAAT 57.681 39.130 0.00 0.00 0.00 2.17
2319 3574 4.483950 CATCTATCTTAGGGTGGTGGAGA 58.516 47.826 0.00 0.00 0.00 3.71
2331 3586 1.272816 TGGTGGAGATCGGTGGTTAGA 60.273 52.381 0.00 0.00 0.00 2.10
2334 3589 0.030908 GGAGATCGGTGGTTAGAGCG 59.969 60.000 0.00 0.00 38.19 5.03
2344 3599 3.458163 TTAGAGCGGGGCAGGTCG 61.458 66.667 5.91 0.00 42.85 4.79
2378 3654 6.461788 GCGAGGAGGAAGAAGATAAATAGTGT 60.462 42.308 0.00 0.00 0.00 3.55
2382 3658 8.482128 AGGAGGAAGAAGATAAATAGTGTCTTG 58.518 37.037 0.00 0.00 32.67 3.02
2399 3675 6.007677 GTGTCTTGATTCGTTTACAATCGTC 58.992 40.000 0.00 0.00 33.57 4.20
2402 3678 2.924926 TGATTCGTTTACAATCGTCGGG 59.075 45.455 0.00 0.00 33.57 5.14
2409 3685 0.975135 TACAATCGTCGGGTGGGAAA 59.025 50.000 0.00 0.00 0.00 3.13
2410 3686 0.108963 ACAATCGTCGGGTGGGAAAA 59.891 50.000 0.00 0.00 0.00 2.29
2456 3732 4.708177 TGGCACTAGATCTTATTTCAGGC 58.292 43.478 0.00 0.00 0.00 4.85
2461 3737 2.843701 AGATCTTATTTCAGGCGCCTG 58.156 47.619 44.24 44.24 44.86 4.85
2470 3746 2.431023 CAGGCGCCTGACCTATAGT 58.569 57.895 46.72 11.69 46.30 2.12
2491 3767 2.891580 TCGGTCCTGGATAGTTGCTATC 59.108 50.000 0.00 7.43 41.31 2.08
2493 3769 4.079970 CGGTCCTGGATAGTTGCTATCTA 58.920 47.826 13.71 8.51 41.63 1.98
2504 3780 9.425577 GGATAGTTGCTATCTATAACCTTGTTC 57.574 37.037 13.71 0.00 41.63 3.18
2505 3781 9.425577 GATAGTTGCTATCTATAACCTTGTTCC 57.574 37.037 8.45 0.00 39.56 3.62
2506 3782 7.439108 AGTTGCTATCTATAACCTTGTTCCT 57.561 36.000 0.00 0.00 0.00 3.36
2509 3785 9.609346 GTTGCTATCTATAACCTTGTTCCTTTA 57.391 33.333 0.00 0.00 0.00 1.85
2510 3786 9.609346 TTGCTATCTATAACCTTGTTCCTTTAC 57.391 33.333 0.00 0.00 0.00 2.01
2515 3791 8.370266 TCTATAACCTTGTTCCTTTACTAGCA 57.630 34.615 0.00 0.00 0.00 3.49
2516 3792 8.818860 TCTATAACCTTGTTCCTTTACTAGCAA 58.181 33.333 0.00 0.00 0.00 3.91
2517 3793 9.444600 CTATAACCTTGTTCCTTTACTAGCAAA 57.555 33.333 0.00 0.00 0.00 3.68
2518 3794 8.879427 ATAACCTTGTTCCTTTACTAGCAAAT 57.121 30.769 0.00 0.00 0.00 2.32
2519 3795 9.969001 ATAACCTTGTTCCTTTACTAGCAAATA 57.031 29.630 0.00 0.00 0.00 1.40
2520 3796 8.879427 AACCTTGTTCCTTTACTAGCAAATAT 57.121 30.769 0.00 0.00 0.00 1.28
2521 3797 8.281212 ACCTTGTTCCTTTACTAGCAAATATG 57.719 34.615 0.00 0.00 0.00 1.78
2532 3808 2.942545 CAAATATGCCCGTGCGTTG 58.057 52.632 0.00 0.00 41.78 4.10
2533 3809 1.138671 AAATATGCCCGTGCGTTGC 59.861 52.632 0.00 0.00 41.78 4.17
2534 3810 1.590610 AAATATGCCCGTGCGTTGCA 61.591 50.000 8.11 8.11 41.78 4.08
2535 3811 1.590610 AATATGCCCGTGCGTTGCAA 61.591 50.000 0.00 0.00 41.47 4.08
2536 3812 2.265073 ATATGCCCGTGCGTTGCAAC 62.265 55.000 19.89 19.89 41.47 4.17
2547 3823 3.179433 GTTGCAACGGGAGAAAAGC 57.821 52.632 14.90 0.00 0.00 3.51
2548 3824 0.668535 GTTGCAACGGGAGAAAAGCT 59.331 50.000 14.90 0.00 0.00 3.74
2549 3825 1.877443 GTTGCAACGGGAGAAAAGCTA 59.123 47.619 14.90 0.00 0.00 3.32
2550 3826 2.488153 GTTGCAACGGGAGAAAAGCTAT 59.512 45.455 14.90 0.00 0.00 2.97
2551 3827 2.790433 TGCAACGGGAGAAAAGCTATT 58.210 42.857 0.00 0.00 0.00 1.73
2552 3828 3.945346 TGCAACGGGAGAAAAGCTATTA 58.055 40.909 0.00 0.00 0.00 0.98
2553 3829 3.938963 TGCAACGGGAGAAAAGCTATTAG 59.061 43.478 0.00 0.00 0.00 1.73
2554 3830 4.189231 GCAACGGGAGAAAAGCTATTAGA 58.811 43.478 0.00 0.00 0.00 2.10
2555 3831 4.816925 GCAACGGGAGAAAAGCTATTAGAT 59.183 41.667 0.00 0.00 0.00 1.98
2556 3832 5.297029 GCAACGGGAGAAAAGCTATTAGATT 59.703 40.000 0.00 0.00 0.00 2.40
2557 3833 6.482308 GCAACGGGAGAAAAGCTATTAGATTA 59.518 38.462 0.00 0.00 0.00 1.75
2558 3834 7.173390 GCAACGGGAGAAAAGCTATTAGATTAT 59.827 37.037 0.00 0.00 0.00 1.28
2559 3835 8.499162 CAACGGGAGAAAAGCTATTAGATTATG 58.501 37.037 0.00 0.00 0.00 1.90
2560 3836 6.651225 ACGGGAGAAAAGCTATTAGATTATGC 59.349 38.462 0.00 0.00 0.00 3.14
2561 3837 6.650807 CGGGAGAAAAGCTATTAGATTATGCA 59.349 38.462 0.00 0.00 0.00 3.96
2562 3838 7.360438 CGGGAGAAAAGCTATTAGATTATGCAC 60.360 40.741 0.00 0.00 0.00 4.57
2563 3839 7.360438 GGGAGAAAAGCTATTAGATTATGCACG 60.360 40.741 0.00 0.00 0.00 5.34
2564 3840 7.171678 GGAGAAAAGCTATTAGATTATGCACGT 59.828 37.037 0.00 0.00 0.00 4.49
2565 3841 7.855545 AGAAAAGCTATTAGATTATGCACGTG 58.144 34.615 12.28 12.28 0.00 4.49
2566 3842 5.597813 AAGCTATTAGATTATGCACGTGC 57.402 39.130 33.11 33.11 42.50 5.34
2567 3843 3.675225 AGCTATTAGATTATGCACGTGCG 59.325 43.478 33.22 16.42 45.83 5.34
2568 3844 3.673338 GCTATTAGATTATGCACGTGCGA 59.327 43.478 33.22 22.16 45.83 5.10
2569 3845 4.327357 GCTATTAGATTATGCACGTGCGAT 59.673 41.667 33.22 27.17 45.83 4.58
2570 3846 5.515270 GCTATTAGATTATGCACGTGCGATA 59.485 40.000 33.22 26.23 45.83 2.92
2571 3847 6.291322 GCTATTAGATTATGCACGTGCGATAG 60.291 42.308 33.22 24.91 45.83 2.08
2572 3848 3.643159 AGATTATGCACGTGCGATAGA 57.357 42.857 33.22 17.73 45.83 1.98
2573 3849 4.179926 AGATTATGCACGTGCGATAGAT 57.820 40.909 33.22 23.05 45.83 1.98
2574 3850 5.310720 AGATTATGCACGTGCGATAGATA 57.689 39.130 33.22 22.03 45.83 1.98
2575 3851 5.895928 AGATTATGCACGTGCGATAGATAT 58.104 37.500 33.22 21.68 45.83 1.63
2576 3852 7.027778 AGATTATGCACGTGCGATAGATATA 57.972 36.000 33.22 20.67 45.83 0.86
2577 3853 7.480810 AGATTATGCACGTGCGATAGATATAA 58.519 34.615 33.22 26.65 45.83 0.98
2578 3854 7.973944 AGATTATGCACGTGCGATAGATATAAA 59.026 33.333 33.22 16.81 45.83 1.40
2579 3855 7.876896 TTATGCACGTGCGATAGATATAAAA 57.123 32.000 33.22 13.16 45.83 1.52
2580 3856 6.779115 ATGCACGTGCGATAGATATAAAAA 57.221 33.333 33.22 12.71 45.83 1.94
2602 3878 3.967332 AATTCTGAACCAAATGCCAGG 57.033 42.857 0.00 0.00 0.00 4.45
2603 3879 2.673775 TTCTGAACCAAATGCCAGGA 57.326 45.000 0.00 0.00 0.00 3.86
2604 3880 2.905415 TCTGAACCAAATGCCAGGAT 57.095 45.000 0.00 0.00 0.00 3.24
2605 3881 2.449464 TCTGAACCAAATGCCAGGATG 58.551 47.619 0.00 0.00 0.00 3.51
2606 3882 2.041485 TCTGAACCAAATGCCAGGATGA 59.959 45.455 0.00 0.00 39.69 2.92
2607 3883 2.426024 CTGAACCAAATGCCAGGATGAG 59.574 50.000 0.00 0.00 39.69 2.90
2608 3884 2.041485 TGAACCAAATGCCAGGATGAGA 59.959 45.455 0.00 0.00 39.69 3.27
2609 3885 3.294214 GAACCAAATGCCAGGATGAGAT 58.706 45.455 0.00 0.00 39.69 2.75
2610 3886 4.079844 TGAACCAAATGCCAGGATGAGATA 60.080 41.667 0.00 0.00 39.69 1.98
2611 3887 4.524802 ACCAAATGCCAGGATGAGATAA 57.475 40.909 0.00 0.00 39.69 1.75
2612 3888 4.467769 ACCAAATGCCAGGATGAGATAAG 58.532 43.478 0.00 0.00 39.69 1.73
2613 3889 3.825014 CCAAATGCCAGGATGAGATAAGG 59.175 47.826 0.00 0.00 39.69 2.69
2614 3890 4.446745 CCAAATGCCAGGATGAGATAAGGA 60.447 45.833 0.00 0.00 39.69 3.36
2615 3891 4.363991 AATGCCAGGATGAGATAAGGAC 57.636 45.455 0.00 0.00 39.69 3.85
2616 3892 3.051940 TGCCAGGATGAGATAAGGACT 57.948 47.619 0.00 0.00 39.69 3.85
2617 3893 3.387962 TGCCAGGATGAGATAAGGACTT 58.612 45.455 0.00 0.00 39.69 3.01
2618 3894 3.782523 TGCCAGGATGAGATAAGGACTTT 59.217 43.478 0.00 0.00 39.69 2.66
2619 3895 4.228210 TGCCAGGATGAGATAAGGACTTTT 59.772 41.667 0.00 0.00 39.69 2.27
2620 3896 5.428457 TGCCAGGATGAGATAAGGACTTTTA 59.572 40.000 0.00 0.00 39.69 1.52
2621 3897 5.994668 GCCAGGATGAGATAAGGACTTTTAG 59.005 44.000 0.00 0.00 39.69 1.85
2622 3898 6.183361 GCCAGGATGAGATAAGGACTTTTAGA 60.183 42.308 0.00 0.00 39.69 2.10
2623 3899 7.635971 GCCAGGATGAGATAAGGACTTTTAGAA 60.636 40.741 0.00 0.00 39.69 2.10
2624 3900 8.435982 CCAGGATGAGATAAGGACTTTTAGAAT 58.564 37.037 0.00 0.00 39.69 2.40
2625 3901 9.270640 CAGGATGAGATAAGGACTTTTAGAATG 57.729 37.037 0.00 0.00 39.69 2.67
2626 3902 8.997734 AGGATGAGATAAGGACTTTTAGAATGT 58.002 33.333 0.00 0.00 0.00 2.71
2654 3930 9.896645 ATTTCATAAAGTATGTCTGAGTGATGT 57.103 29.630 0.00 0.00 37.45 3.06
2655 3931 8.932945 TTCATAAAGTATGTCTGAGTGATGTC 57.067 34.615 0.00 0.00 37.45 3.06
2656 3932 8.066612 TCATAAAGTATGTCTGAGTGATGTCA 57.933 34.615 0.00 0.00 37.45 3.58
2657 3933 8.699130 TCATAAAGTATGTCTGAGTGATGTCAT 58.301 33.333 0.00 0.00 37.45 3.06
2658 3934 8.762426 CATAAAGTATGTCTGAGTGATGTCATG 58.238 37.037 0.00 0.00 0.00 3.07
2659 3935 6.535963 AAGTATGTCTGAGTGATGTCATGA 57.464 37.500 0.00 0.00 0.00 3.07
2660 3936 6.728089 AGTATGTCTGAGTGATGTCATGAT 57.272 37.500 0.00 0.00 0.00 2.45
2661 3937 6.514063 AGTATGTCTGAGTGATGTCATGATG 58.486 40.000 0.00 0.00 0.00 3.07
2662 3938 5.609533 ATGTCTGAGTGATGTCATGATGA 57.390 39.130 0.00 0.00 0.00 2.92
2663 3939 5.007385 TGTCTGAGTGATGTCATGATGAG 57.993 43.478 0.00 0.00 0.00 2.90
2664 3940 4.708421 TGTCTGAGTGATGTCATGATGAGA 59.292 41.667 0.00 0.00 0.00 3.27
2665 3941 5.363005 TGTCTGAGTGATGTCATGATGAGAT 59.637 40.000 4.60 4.60 32.62 2.75
2666 3942 6.548622 TGTCTGAGTGATGTCATGATGAGATA 59.451 38.462 4.95 0.00 29.83 1.98
2667 3943 7.069085 TGTCTGAGTGATGTCATGATGAGATAA 59.931 37.037 4.95 0.00 29.83 1.75
2668 3944 7.595875 GTCTGAGTGATGTCATGATGAGATAAG 59.404 40.741 4.95 0.06 29.83 1.73
2669 3945 6.756221 TGAGTGATGTCATGATGAGATAAGG 58.244 40.000 4.95 0.00 29.83 2.69
2670 3946 6.111669 AGTGATGTCATGATGAGATAAGGG 57.888 41.667 4.95 0.00 29.83 3.95
2671 3947 5.842874 AGTGATGTCATGATGAGATAAGGGA 59.157 40.000 4.95 0.00 29.83 4.20
2672 3948 5.931146 GTGATGTCATGATGAGATAAGGGAC 59.069 44.000 4.95 0.00 29.83 4.46
2673 3949 5.842874 TGATGTCATGATGAGATAAGGGACT 59.157 40.000 4.95 0.00 31.95 3.85
2724 4000 3.510388 GATGGTCTCATCACGACTTGA 57.490 47.619 0.00 0.00 46.74 3.02
2725 4001 4.052159 GATGGTCTCATCACGACTTGAT 57.948 45.455 0.00 0.00 46.75 2.57
2726 4002 3.961480 TGGTCTCATCACGACTTGATT 57.039 42.857 0.00 0.00 42.87 2.57
2727 4003 4.271696 TGGTCTCATCACGACTTGATTT 57.728 40.909 0.00 0.00 42.87 2.17
2728 4004 4.641396 TGGTCTCATCACGACTTGATTTT 58.359 39.130 0.00 0.00 42.87 1.82
2729 4005 4.690748 TGGTCTCATCACGACTTGATTTTC 59.309 41.667 0.00 0.00 42.87 2.29
2730 4006 4.932200 GGTCTCATCACGACTTGATTTTCT 59.068 41.667 0.00 0.00 42.87 2.52
2731 4007 6.100004 GGTCTCATCACGACTTGATTTTCTA 58.900 40.000 0.00 0.00 42.87 2.10
2732 4008 6.590292 GGTCTCATCACGACTTGATTTTCTAA 59.410 38.462 0.00 0.00 42.87 2.10
2733 4009 7.412020 GGTCTCATCACGACTTGATTTTCTAAC 60.412 40.741 0.00 0.00 42.87 2.34
2734 4010 6.308041 TCTCATCACGACTTGATTTTCTAACG 59.692 38.462 0.00 0.00 42.87 3.18
2735 4011 4.640805 TCACGACTTGATTTTCTAACGC 57.359 40.909 0.00 0.00 0.00 4.84
2736 4012 3.120616 TCACGACTTGATTTTCTAACGCG 59.879 43.478 3.53 3.53 0.00 6.01
2737 4013 3.054878 ACGACTTGATTTTCTAACGCGT 58.945 40.909 5.58 5.58 0.00 6.01
2738 4014 3.120782 ACGACTTGATTTTCTAACGCGTC 59.879 43.478 14.44 0.00 0.00 5.19
2739 4015 3.120616 CGACTTGATTTTCTAACGCGTCA 59.879 43.478 14.44 0.00 0.00 4.35
2740 4016 4.201589 CGACTTGATTTTCTAACGCGTCAT 60.202 41.667 14.44 0.00 0.00 3.06
2741 4017 5.004061 CGACTTGATTTTCTAACGCGTCATA 59.996 40.000 14.44 0.18 0.00 2.15
2742 4018 6.453265 CGACTTGATTTTCTAACGCGTCATAA 60.453 38.462 14.44 3.84 0.00 1.90
2743 4019 6.531439 ACTTGATTTTCTAACGCGTCATAAC 58.469 36.000 14.44 0.35 0.00 1.89
2767 4043 3.354089 AAAATGTCGGTGAGCAAACTG 57.646 42.857 0.00 0.00 0.00 3.16
2768 4044 0.593128 AATGTCGGTGAGCAAACTGC 59.407 50.000 0.00 0.00 45.46 4.40
2779 4055 2.728690 GCAAACTGCATTGATGGACA 57.271 45.000 4.21 0.00 44.26 4.02
2780 4056 2.331194 GCAAACTGCATTGATGGACAC 58.669 47.619 4.21 0.00 44.26 3.67
2781 4057 2.029649 GCAAACTGCATTGATGGACACT 60.030 45.455 4.21 0.00 44.26 3.55
2782 4058 3.571571 CAAACTGCATTGATGGACACTG 58.428 45.455 0.00 0.00 31.84 3.66
2785 4061 2.877975 GCATTGATGGACACTGCCT 58.122 52.632 0.00 0.00 45.33 4.75
2786 4062 0.454600 GCATTGATGGACACTGCCTG 59.545 55.000 0.00 0.00 45.33 4.85
2787 4063 1.951895 GCATTGATGGACACTGCCTGA 60.952 52.381 0.00 0.00 45.33 3.86
2788 4064 2.014857 CATTGATGGACACTGCCTGAG 58.985 52.381 0.00 0.00 0.00 3.35
2789 4065 0.321919 TTGATGGACACTGCCTGAGC 60.322 55.000 0.00 0.00 40.48 4.26
2790 4066 1.196766 TGATGGACACTGCCTGAGCT 61.197 55.000 0.00 0.00 40.80 4.09
2791 4067 0.826715 GATGGACACTGCCTGAGCTA 59.173 55.000 0.00 0.00 40.80 3.32
2792 4068 0.829333 ATGGACACTGCCTGAGCTAG 59.171 55.000 0.00 0.00 40.80 3.42
2793 4069 0.251787 TGGACACTGCCTGAGCTAGA 60.252 55.000 0.00 0.00 40.80 2.43
2794 4070 0.174617 GGACACTGCCTGAGCTAGAC 59.825 60.000 0.00 0.00 40.80 2.59
2795 4071 1.181786 GACACTGCCTGAGCTAGACT 58.818 55.000 0.00 0.00 40.80 3.24
2796 4072 0.894141 ACACTGCCTGAGCTAGACTG 59.106 55.000 0.00 0.00 40.80 3.51
2797 4073 1.180907 CACTGCCTGAGCTAGACTGA 58.819 55.000 0.00 0.00 40.80 3.41
2798 4074 1.755959 CACTGCCTGAGCTAGACTGAT 59.244 52.381 0.00 0.00 40.80 2.90
2799 4075 1.755959 ACTGCCTGAGCTAGACTGATG 59.244 52.381 0.00 0.00 40.80 3.07
2800 4076 1.068895 CTGCCTGAGCTAGACTGATGG 59.931 57.143 0.00 0.00 40.80 3.51
2801 4077 0.392336 GCCTGAGCTAGACTGATGGG 59.608 60.000 0.00 0.00 35.50 4.00
2802 4078 1.786937 CCTGAGCTAGACTGATGGGT 58.213 55.000 0.00 0.00 0.00 4.51
2803 4079 1.411977 CCTGAGCTAGACTGATGGGTG 59.588 57.143 0.00 0.00 0.00 4.61
2804 4080 2.382882 CTGAGCTAGACTGATGGGTGA 58.617 52.381 0.00 0.00 0.00 4.02
2805 4081 2.361757 CTGAGCTAGACTGATGGGTGAG 59.638 54.545 0.00 0.00 0.00 3.51
2806 4082 2.291865 TGAGCTAGACTGATGGGTGAGT 60.292 50.000 0.00 0.00 0.00 3.41
2807 4083 2.100584 GAGCTAGACTGATGGGTGAGTG 59.899 54.545 0.00 0.00 0.00 3.51
2808 4084 1.472376 GCTAGACTGATGGGTGAGTGC 60.472 57.143 0.00 0.00 0.00 4.40
2809 4085 1.137872 CTAGACTGATGGGTGAGTGCC 59.862 57.143 0.00 0.00 0.00 5.01
2810 4086 0.546267 AGACTGATGGGTGAGTGCCT 60.546 55.000 0.00 0.00 0.00 4.75
2811 4087 0.107945 GACTGATGGGTGAGTGCCTC 60.108 60.000 0.00 0.00 0.00 4.70
2812 4088 1.153489 CTGATGGGTGAGTGCCTCG 60.153 63.158 0.00 0.00 32.35 4.63
2813 4089 2.512515 GATGGGTGAGTGCCTCGC 60.513 66.667 7.09 7.09 39.93 5.03
2818 4094 2.343758 GTGAGTGCCTCGCCTTGA 59.656 61.111 4.87 0.00 35.24 3.02
2819 4095 2.029844 GTGAGTGCCTCGCCTTGAC 61.030 63.158 4.87 0.00 35.24 3.18
2820 4096 2.435059 GAGTGCCTCGCCTTGACC 60.435 66.667 0.00 0.00 0.00 4.02
2821 4097 2.925170 AGTGCCTCGCCTTGACCT 60.925 61.111 0.00 0.00 0.00 3.85
2822 4098 1.605058 GAGTGCCTCGCCTTGACCTA 61.605 60.000 0.00 0.00 0.00 3.08
2823 4099 1.153549 GTGCCTCGCCTTGACCTAG 60.154 63.158 0.00 0.00 0.00 3.02
2824 4100 2.202946 GCCTCGCCTTGACCTAGC 60.203 66.667 0.00 0.00 0.00 3.42
2828 4104 4.711980 CGCCTTGACCTAGCGTAG 57.288 61.111 0.00 0.00 44.65 3.51
2829 4105 1.807886 CGCCTTGACCTAGCGTAGT 59.192 57.895 0.00 0.00 44.65 2.73
2830 4106 0.525668 CGCCTTGACCTAGCGTAGTG 60.526 60.000 0.00 0.00 44.65 2.74
2831 4107 0.179108 GCCTTGACCTAGCGTAGTGG 60.179 60.000 0.00 0.00 0.00 4.00
2832 4108 1.183549 CCTTGACCTAGCGTAGTGGT 58.816 55.000 0.00 0.00 36.70 4.16
2833 4109 1.135083 CCTTGACCTAGCGTAGTGGTG 60.135 57.143 0.00 0.00 33.74 4.17
2834 4110 1.544691 CTTGACCTAGCGTAGTGGTGT 59.455 52.381 0.00 0.00 33.74 4.16
2835 4111 1.624336 TGACCTAGCGTAGTGGTGTT 58.376 50.000 0.00 0.00 33.74 3.32
2836 4112 1.965643 TGACCTAGCGTAGTGGTGTTT 59.034 47.619 0.00 0.00 33.74 2.83
2837 4113 3.156293 TGACCTAGCGTAGTGGTGTTTA 58.844 45.455 0.00 0.00 33.74 2.01
2838 4114 3.765511 TGACCTAGCGTAGTGGTGTTTAT 59.234 43.478 0.00 0.00 33.74 1.40
2839 4115 4.949238 TGACCTAGCGTAGTGGTGTTTATA 59.051 41.667 0.00 0.00 33.74 0.98
2840 4116 5.418524 TGACCTAGCGTAGTGGTGTTTATAA 59.581 40.000 0.00 0.00 33.74 0.98
2841 4117 6.097270 TGACCTAGCGTAGTGGTGTTTATAAT 59.903 38.462 0.00 0.00 33.74 1.28
2842 4118 7.285172 TGACCTAGCGTAGTGGTGTTTATAATA 59.715 37.037 0.00 0.00 33.74 0.98
2843 4119 8.010733 ACCTAGCGTAGTGGTGTTTATAATAA 57.989 34.615 0.00 0.00 32.16 1.40
2844 4120 8.645110 ACCTAGCGTAGTGGTGTTTATAATAAT 58.355 33.333 0.00 0.00 32.16 1.28
2845 4121 9.136952 CCTAGCGTAGTGGTGTTTATAATAATC 57.863 37.037 0.00 0.00 0.00 1.75
2846 4122 9.687210 CTAGCGTAGTGGTGTTTATAATAATCA 57.313 33.333 0.00 0.00 0.00 2.57
2847 4123 8.589335 AGCGTAGTGGTGTTTATAATAATCAG 57.411 34.615 0.00 0.00 0.00 2.90
2848 4124 8.202137 AGCGTAGTGGTGTTTATAATAATCAGT 58.798 33.333 0.00 0.00 0.00 3.41
2849 4125 9.467258 GCGTAGTGGTGTTTATAATAATCAGTA 57.533 33.333 0.00 0.00 0.00 2.74
2894 4170 9.905713 ATAGCTGTGTATGAAGGAAAAATAGAA 57.094 29.630 0.00 0.00 0.00 2.10
2895 4171 8.635765 AGCTGTGTATGAAGGAAAAATAGAAA 57.364 30.769 0.00 0.00 0.00 2.52
2896 4172 9.247861 AGCTGTGTATGAAGGAAAAATAGAAAT 57.752 29.630 0.00 0.00 0.00 2.17
2897 4173 9.860898 GCTGTGTATGAAGGAAAAATAGAAATT 57.139 29.630 0.00 0.00 0.00 1.82
2947 4223 8.827177 AAATTAACTCATAGAAAGTCGTGTCA 57.173 30.769 0.00 0.00 0.00 3.58
2948 4224 8.827177 AATTAACTCATAGAAAGTCGTGTCAA 57.173 30.769 0.00 0.00 0.00 3.18
2949 4225 7.633361 TTAACTCATAGAAAGTCGTGTCAAC 57.367 36.000 0.00 0.00 0.00 3.18
2950 4226 5.455056 ACTCATAGAAAGTCGTGTCAACT 57.545 39.130 0.00 0.00 0.00 3.16
2951 4227 5.844004 ACTCATAGAAAGTCGTGTCAACTT 58.156 37.500 0.00 0.00 38.59 2.66
2952 4228 6.281405 ACTCATAGAAAGTCGTGTCAACTTT 58.719 36.000 2.88 2.88 46.74 2.66
2953 4229 6.761714 ACTCATAGAAAGTCGTGTCAACTTTT 59.238 34.615 4.53 0.00 44.72 2.27
2954 4230 6.943981 TCATAGAAAGTCGTGTCAACTTTTG 58.056 36.000 4.53 0.91 44.72 2.44
2955 4231 6.759356 TCATAGAAAGTCGTGTCAACTTTTGA 59.241 34.615 4.53 2.83 44.72 2.69
2956 4232 5.470845 AGAAAGTCGTGTCAACTTTTGAG 57.529 39.130 4.53 0.00 44.72 3.02
2957 4233 4.332819 AGAAAGTCGTGTCAACTTTTGAGG 59.667 41.667 4.53 0.00 44.72 3.86
2958 4234 2.561569 AGTCGTGTCAACTTTTGAGGG 58.438 47.619 0.00 0.00 41.01 4.30
2959 4235 1.002792 GTCGTGTCAACTTTTGAGGGC 60.003 52.381 0.00 0.00 41.01 5.19
2960 4236 1.134220 TCGTGTCAACTTTTGAGGGCT 60.134 47.619 0.00 0.00 41.01 5.19
2961 4237 1.264288 CGTGTCAACTTTTGAGGGCTC 59.736 52.381 0.00 0.00 41.01 4.70
2962 4238 2.297701 GTGTCAACTTTTGAGGGCTCA 58.702 47.619 0.00 0.00 41.01 4.26
2963 4239 2.291741 GTGTCAACTTTTGAGGGCTCAG 59.708 50.000 0.00 0.00 41.01 3.35
2964 4240 1.268079 GTCAACTTTTGAGGGCTCAGC 59.732 52.381 0.00 0.00 41.01 4.26
2965 4241 0.239347 CAACTTTTGAGGGCTCAGCG 59.761 55.000 0.00 0.00 41.13 5.18
2966 4242 0.179018 AACTTTTGAGGGCTCAGCGT 60.179 50.000 0.00 0.00 41.13 5.07
2967 4243 0.179018 ACTTTTGAGGGCTCAGCGTT 60.179 50.000 0.00 0.00 41.13 4.84
2968 4244 0.239347 CTTTTGAGGGCTCAGCGTTG 59.761 55.000 0.00 0.00 41.13 4.10
2969 4245 0.465460 TTTTGAGGGCTCAGCGTTGT 60.465 50.000 0.00 0.00 41.13 3.32
2970 4246 0.394938 TTTGAGGGCTCAGCGTTGTA 59.605 50.000 0.00 0.00 41.13 2.41
2971 4247 0.320421 TTGAGGGCTCAGCGTTGTAC 60.320 55.000 0.00 0.00 41.13 2.90
2972 4248 1.292223 GAGGGCTCAGCGTTGTACA 59.708 57.895 0.00 0.00 0.00 2.90
2973 4249 0.320421 GAGGGCTCAGCGTTGTACAA 60.320 55.000 3.59 3.59 0.00 2.41
2974 4250 0.320771 AGGGCTCAGCGTTGTACAAG 60.321 55.000 8.98 4.70 0.00 3.16
2975 4251 0.320421 GGGCTCAGCGTTGTACAAGA 60.320 55.000 8.98 1.71 0.00 3.02
2976 4252 0.790814 GGCTCAGCGTTGTACAAGAC 59.209 55.000 8.98 4.04 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
366 372 1.410004 TACCGCCTCTGGTCCTAATG 58.590 55.000 0.00 0.00 42.62 1.90
474 480 5.465390 AGCTTCCTTTTGCCGTTTTATTTTC 59.535 36.000 0.00 0.00 0.00 2.29
533 542 4.807631 GCCGGGGCCGTAATGGTT 62.808 66.667 2.18 0.00 41.21 3.67
874 908 1.065701 AGTCTGTCATCGATGCGTACC 59.934 52.381 20.81 8.12 0.00 3.34
887 921 4.083862 GGGCACGGGGAGTCTGTC 62.084 72.222 0.00 0.00 31.34 3.51
918 952 1.849306 CGATCAATCGGAAGCGAGC 59.151 57.895 4.48 0.00 45.93 5.03
929 963 0.108585 CCCACCCGATTCCGATCAAT 59.891 55.000 0.00 0.00 38.22 2.57
944 978 1.594331 GGGATTAGTTCATCGCCCAC 58.406 55.000 0.00 0.00 35.63 4.61
948 982 0.106149 ACGGGGGATTAGTTCATCGC 59.894 55.000 0.00 0.00 35.78 4.58
970 1004 4.090057 GCAACGAGCGAGCCAACC 62.090 66.667 0.00 0.00 0.00 3.77
1108 2129 0.037326 TTTCCTTGCATCTCGTCGCT 60.037 50.000 0.00 0.00 0.00 4.93
1119 2140 0.790814 CGAACCTCTCGTTTCCTTGC 59.209 55.000 0.00 0.00 42.89 4.01
1155 2181 1.488393 CCCCCAAAACACCACACAATT 59.512 47.619 0.00 0.00 0.00 2.32
1158 2184 2.060980 GCCCCCAAAACACCACACA 61.061 57.895 0.00 0.00 0.00 3.72
1159 2185 2.802724 GGCCCCCAAAACACCACAC 61.803 63.158 0.00 0.00 0.00 3.82
1230 2256 6.105397 TCATGTCATCTCATAGCAATGCTA 57.895 37.500 17.97 17.97 45.55 3.49
1231 2257 4.969484 TCATGTCATCTCATAGCAATGCT 58.031 39.130 13.92 13.92 43.41 3.79
1232 2258 5.684550 TTCATGTCATCTCATAGCAATGC 57.315 39.130 0.00 0.00 32.76 3.56
1262 2293 8.833231 AACTGATATTCGGTGGTAATGATTAG 57.167 34.615 0.00 0.00 35.86 1.73
1263 2294 7.876068 GGAACTGATATTCGGTGGTAATGATTA 59.124 37.037 0.00 0.00 35.86 1.75
1264 2295 6.710744 GGAACTGATATTCGGTGGTAATGATT 59.289 38.462 0.00 0.00 35.86 2.57
1284 2315 2.100989 GTGTAGATGAGGTCGGGAACT 58.899 52.381 0.00 0.00 0.00 3.01
1285 2316 1.136500 GGTGTAGATGAGGTCGGGAAC 59.864 57.143 0.00 0.00 0.00 3.62
1286 2317 1.481871 GGTGTAGATGAGGTCGGGAA 58.518 55.000 0.00 0.00 0.00 3.97
1288 2319 0.397254 AGGGTGTAGATGAGGTCGGG 60.397 60.000 0.00 0.00 0.00 5.14
1289 2320 0.747255 CAGGGTGTAGATGAGGTCGG 59.253 60.000 0.00 0.00 0.00 4.79
1293 2330 2.567169 TGTTCACAGGGTGTAGATGAGG 59.433 50.000 0.00 0.00 34.79 3.86
1311 2348 2.553602 TCAGCGCATTTGAACATCTGTT 59.446 40.909 11.47 0.00 41.64 3.16
1328 2556 5.219768 CGTAATGTACGTGCAAAAATTCAGC 60.220 40.000 11.22 0.00 46.41 4.26
1344 2572 6.871492 TGAAAGATGCTTGAGTTCGTAATGTA 59.129 34.615 0.00 0.00 0.00 2.29
1349 2577 4.883083 AGTGAAAGATGCTTGAGTTCGTA 58.117 39.130 0.00 0.00 0.00 3.43
1352 2580 6.545504 TTGTAGTGAAAGATGCTTGAGTTC 57.454 37.500 0.00 0.00 0.00 3.01
1417 2645 2.758423 GCCCGGGAATGAACAGTAAATT 59.242 45.455 29.31 0.00 0.00 1.82
1418 2646 2.025321 AGCCCGGGAATGAACAGTAAAT 60.025 45.455 29.31 0.00 0.00 1.40
1421 2649 0.539986 GAGCCCGGGAATGAACAGTA 59.460 55.000 29.31 0.00 0.00 2.74
1422 2650 1.299976 GAGCCCGGGAATGAACAGT 59.700 57.895 29.31 0.00 0.00 3.55
1442 2670 0.968901 TGGTAATGAGGACGAGGCGT 60.969 55.000 0.00 0.00 45.10 5.68
1444 2672 0.535335 TGTGGTAATGAGGACGAGGC 59.465 55.000 0.00 0.00 0.00 4.70
1445 2673 3.000727 GTTTGTGGTAATGAGGACGAGG 58.999 50.000 0.00 0.00 0.00 4.63
1446 2674 3.926616 AGTTTGTGGTAATGAGGACGAG 58.073 45.455 0.00 0.00 0.00 4.18
1447 2675 4.039973 AGAAGTTTGTGGTAATGAGGACGA 59.960 41.667 0.00 0.00 0.00 4.20
1472 2719 2.815647 GCTTCCGAGAACCTGCCG 60.816 66.667 0.00 0.00 0.00 5.69
1483 2730 2.125350 GGAGCCTGACTGCTTCCG 60.125 66.667 0.00 0.00 42.95 4.30
1512 2759 1.962807 CTTGGCACAGATTTCCAACCA 59.037 47.619 0.00 0.00 42.39 3.67
1524 2771 2.093890 CCTACATTGCATCTTGGCACA 58.906 47.619 0.00 0.00 44.86 4.57
1528 2775 3.220110 AGCATCCTACATTGCATCTTGG 58.780 45.455 0.00 0.00 41.35 3.61
1529 2776 4.135306 AGAGCATCCTACATTGCATCTTG 58.865 43.478 0.00 0.00 41.35 3.02
1565 2816 3.267483 GAACACCATGTAAGTGGCGTAT 58.733 45.455 5.70 0.00 43.27 3.06
1572 2823 3.149196 CCAGCTTGAACACCATGTAAGT 58.851 45.455 0.00 0.00 0.00 2.24
1590 2841 2.290260 TGTTGAACCCACTATCTGCCAG 60.290 50.000 0.00 0.00 0.00 4.85
1621 2872 1.375523 GACGCCACCTGAAACGGAT 60.376 57.895 0.00 0.00 0.00 4.18
1637 2888 0.392998 ACCATCCAATGCCGACTGAC 60.393 55.000 0.00 0.00 0.00 3.51
1644 2895 2.571212 TGAACGATACCATCCAATGCC 58.429 47.619 0.00 0.00 0.00 4.40
1660 2911 2.159296 AGGCAAACTTTCCGTGTTGAAC 60.159 45.455 0.00 0.00 0.00 3.18
1682 2933 1.098050 CAACCTCCATGTAGCCTTGC 58.902 55.000 0.00 0.00 0.00 4.01
1697 2948 3.335729 ACCCCGTCATCCCCAACC 61.336 66.667 0.00 0.00 0.00 3.77
1712 2963 3.438781 TCCAAATATGTTTGCGAGTCACC 59.561 43.478 9.28 0.00 42.66 4.02
1720 2971 4.884164 AGCTAGACCTCCAAATATGTTTGC 59.116 41.667 9.28 0.00 42.66 3.68
1725 2976 3.648067 TCCCAGCTAGACCTCCAAATATG 59.352 47.826 0.00 0.00 0.00 1.78
1743 2994 1.981853 GCCGCCAATTTTCCTCCCA 60.982 57.895 0.00 0.00 0.00 4.37
1787 3038 3.686241 TCTTGTCCTTGAGATGAATTGCG 59.314 43.478 0.00 0.00 0.00 4.85
1801 3052 1.366319 AGGGAGCACAATCTTGTCCT 58.634 50.000 0.00 0.00 39.91 3.85
1802 3053 1.815003 CAAGGGAGCACAATCTTGTCC 59.185 52.381 0.00 0.00 39.91 4.02
1821 3072 3.072476 GCAGTCAGCCCTTCTCCA 58.928 61.111 0.00 0.00 37.23 3.86
1833 3084 1.142748 CGACCTCCATCCAGCAGTC 59.857 63.158 0.00 0.00 0.00 3.51
1836 3087 2.725312 GCTCGACCTCCATCCAGCA 61.725 63.158 0.00 0.00 0.00 4.41
1854 3105 2.352814 CCTCGTTGTAGAACTCACCCAG 60.353 54.545 0.86 0.00 0.00 4.45
1882 3133 2.887568 CAGACACCTCGCCATCGC 60.888 66.667 0.00 0.00 35.26 4.58
1889 3140 1.592400 TTAGGCCGACAGACACCTCG 61.592 60.000 0.00 0.00 33.60 4.63
1902 3153 1.376609 CCGGTTGTCTGCATTAGGCC 61.377 60.000 0.00 0.00 43.89 5.19
1907 3158 0.620556 ATCCTCCGGTTGTCTGCATT 59.379 50.000 0.00 0.00 0.00 3.56
1919 3170 0.105039 GGCCACTCTTGTATCCTCCG 59.895 60.000 0.00 0.00 0.00 4.63
1937 3189 1.821753 TCAACACCCAACACAACAAGG 59.178 47.619 0.00 0.00 0.00 3.61
1955 3207 9.551734 CCACATCATTGTTTAGATCTAATCTCA 57.448 33.333 15.82 12.21 35.90 3.27
1959 3211 8.204160 TCGTCCACATCATTGTTTAGATCTAAT 58.796 33.333 15.82 0.00 32.34 1.73
1970 3222 2.079158 CAAGCTCGTCCACATCATTGT 58.921 47.619 0.00 0.00 36.15 2.71
1993 3245 2.159085 ACGACCCTCATTTTCTCGATCC 60.159 50.000 0.00 0.00 0.00 3.36
2000 3252 0.442699 GTGCGACGACCCTCATTTTC 59.557 55.000 0.00 0.00 0.00 2.29
2001 3253 0.034896 AGTGCGACGACCCTCATTTT 59.965 50.000 0.00 0.00 0.00 1.82
2107 3362 8.386606 GTTGTTGTTAATGAATGTTTTGCTTGA 58.613 29.630 0.00 0.00 0.00 3.02
2197 3452 5.234116 GTGATTGACGGCTGAAACAATTTTT 59.766 36.000 0.00 0.00 33.92 1.94
2198 3453 4.744631 GTGATTGACGGCTGAAACAATTTT 59.255 37.500 0.00 0.00 33.92 1.82
2220 3475 4.014273 AGGACATATGGAAGGAAGAGGT 57.986 45.455 7.80 0.00 0.00 3.85
2233 3488 4.080299 GTGAGGTTGGAAGGAAGGACATAT 60.080 45.833 0.00 0.00 0.00 1.78
2234 3489 3.263425 GTGAGGTTGGAAGGAAGGACATA 59.737 47.826 0.00 0.00 0.00 2.29
2235 3490 2.040412 GTGAGGTTGGAAGGAAGGACAT 59.960 50.000 0.00 0.00 0.00 3.06
2236 3491 1.420138 GTGAGGTTGGAAGGAAGGACA 59.580 52.381 0.00 0.00 0.00 4.02
2237 3492 1.271434 GGTGAGGTTGGAAGGAAGGAC 60.271 57.143 0.00 0.00 0.00 3.85
2259 3514 4.946157 TCTCCGACGAGGTTATTTCTACTT 59.054 41.667 0.00 0.00 41.99 2.24
2268 3523 0.609957 TGGCTTCTCCGACGAGGTTA 60.610 55.000 0.00 0.00 41.99 2.85
2319 3574 2.432300 CCCCGCTCTAACCACCGAT 61.432 63.158 0.00 0.00 0.00 4.18
2352 3628 3.438297 TTTATCTTCTTCCTCCTCGCG 57.562 47.619 0.00 0.00 0.00 5.87
2378 3654 4.325204 CCGACGATTGTAAACGAATCAAGA 59.675 41.667 0.00 0.00 31.26 3.02
2382 3658 2.925563 ACCCGACGATTGTAAACGAATC 59.074 45.455 0.00 0.00 0.00 2.52
2386 3662 0.717224 CCACCCGACGATTGTAAACG 59.283 55.000 0.00 0.00 0.00 3.60
2395 3671 1.196104 ATCCTTTTCCCACCCGACGA 61.196 55.000 0.00 0.00 0.00 4.20
2396 3672 1.024579 CATCCTTTTCCCACCCGACG 61.025 60.000 0.00 0.00 0.00 5.12
2399 3675 0.965363 CACCATCCTTTTCCCACCCG 60.965 60.000 0.00 0.00 0.00 5.28
2402 3678 1.560505 ATGCACCATCCTTTTCCCAC 58.439 50.000 0.00 0.00 0.00 4.61
2409 3685 5.183904 GTCACTTTCTTTATGCACCATCCTT 59.816 40.000 0.00 0.00 0.00 3.36
2410 3686 4.702131 GTCACTTTCTTTATGCACCATCCT 59.298 41.667 0.00 0.00 0.00 3.24
2456 3732 2.716814 ACCGACTATAGGTCAGGCG 58.283 57.895 4.43 0.00 44.70 5.52
2463 3739 4.304048 ACTATCCAGGACCGACTATAGG 57.696 50.000 4.43 0.00 0.00 2.57
2464 3740 4.082679 GCAACTATCCAGGACCGACTATAG 60.083 50.000 0.00 0.00 0.00 1.31
2465 3741 3.825014 GCAACTATCCAGGACCGACTATA 59.175 47.826 0.00 0.00 0.00 1.31
2466 3742 2.628657 GCAACTATCCAGGACCGACTAT 59.371 50.000 0.00 0.00 0.00 2.12
2467 3743 2.029623 GCAACTATCCAGGACCGACTA 58.970 52.381 0.00 0.00 0.00 2.59
2468 3744 0.824759 GCAACTATCCAGGACCGACT 59.175 55.000 0.00 0.00 0.00 4.18
2469 3745 0.824759 AGCAACTATCCAGGACCGAC 59.175 55.000 0.00 0.00 0.00 4.79
2470 3746 2.447408 TAGCAACTATCCAGGACCGA 57.553 50.000 0.00 0.00 0.00 4.69
2472 3748 7.363968 GGTTATAGATAGCAACTATCCAGGACC 60.364 44.444 10.29 10.04 42.56 4.46
2473 3749 7.397761 AGGTTATAGATAGCAACTATCCAGGAC 59.602 40.741 10.29 5.90 42.56 3.85
2474 3750 7.479579 AGGTTATAGATAGCAACTATCCAGGA 58.520 38.462 10.29 0.00 42.56 3.86
2475 3751 7.726033 AGGTTATAGATAGCAACTATCCAGG 57.274 40.000 10.29 0.00 42.56 4.45
2476 3752 8.589338 ACAAGGTTATAGATAGCAACTATCCAG 58.411 37.037 10.29 0.00 42.56 3.86
2477 3753 8.492415 ACAAGGTTATAGATAGCAACTATCCA 57.508 34.615 10.29 0.00 42.56 3.41
2478 3754 9.425577 GAACAAGGTTATAGATAGCAACTATCC 57.574 37.037 10.29 0.00 42.56 2.59
2491 3767 9.444600 TTTGCTAGTAAAGGAACAAGGTTATAG 57.555 33.333 1.42 0.00 34.93 1.31
2493 3769 8.879427 ATTTGCTAGTAAAGGAACAAGGTTAT 57.121 30.769 11.72 0.00 34.93 1.89
2514 3790 1.139226 GCAACGCACGGGCATATTTG 61.139 55.000 11.77 8.22 41.24 2.32
2515 3791 1.138671 GCAACGCACGGGCATATTT 59.861 52.632 11.77 0.00 41.24 1.40
2516 3792 1.590610 TTGCAACGCACGGGCATATT 61.591 50.000 11.77 0.00 38.71 1.28
2517 3793 2.043405 TTGCAACGCACGGGCATAT 61.043 52.632 11.77 0.00 38.71 1.78
2518 3794 2.669910 TTGCAACGCACGGGCATA 60.670 55.556 11.77 0.00 38.71 3.14
2519 3795 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
2529 3805 0.668535 AGCTTTTCTCCCGTTGCAAC 59.331 50.000 19.89 19.89 0.00 4.17
2530 3806 2.264005 TAGCTTTTCTCCCGTTGCAA 57.736 45.000 0.00 0.00 0.00 4.08
2531 3807 2.489938 ATAGCTTTTCTCCCGTTGCA 57.510 45.000 0.00 0.00 0.00 4.08
2532 3808 4.189231 TCTAATAGCTTTTCTCCCGTTGC 58.811 43.478 0.00 0.00 0.00 4.17
2533 3809 6.927294 AATCTAATAGCTTTTCTCCCGTTG 57.073 37.500 0.00 0.00 0.00 4.10
2534 3810 7.173390 GCATAATCTAATAGCTTTTCTCCCGTT 59.827 37.037 0.00 0.00 0.00 4.44
2535 3811 6.651225 GCATAATCTAATAGCTTTTCTCCCGT 59.349 38.462 0.00 0.00 0.00 5.28
2536 3812 6.650807 TGCATAATCTAATAGCTTTTCTCCCG 59.349 38.462 0.00 0.00 0.00 5.14
2537 3813 7.360438 CGTGCATAATCTAATAGCTTTTCTCCC 60.360 40.741 0.00 0.00 0.00 4.30
2538 3814 7.171678 ACGTGCATAATCTAATAGCTTTTCTCC 59.828 37.037 0.00 0.00 0.00 3.71
2539 3815 8.006590 CACGTGCATAATCTAATAGCTTTTCTC 58.993 37.037 0.82 0.00 0.00 2.87
2540 3816 7.519008 GCACGTGCATAATCTAATAGCTTTTCT 60.519 37.037 34.52 0.00 41.59 2.52
2541 3817 6.575201 GCACGTGCATAATCTAATAGCTTTTC 59.425 38.462 34.52 0.00 41.59 2.29
2542 3818 6.430451 GCACGTGCATAATCTAATAGCTTTT 58.570 36.000 34.52 0.00 41.59 2.27
2543 3819 5.333339 CGCACGTGCATAATCTAATAGCTTT 60.333 40.000 37.03 0.00 42.21 3.51
2544 3820 4.150627 CGCACGTGCATAATCTAATAGCTT 59.849 41.667 37.03 0.00 42.21 3.74
2545 3821 3.675225 CGCACGTGCATAATCTAATAGCT 59.325 43.478 37.03 0.00 42.21 3.32
2546 3822 3.673338 TCGCACGTGCATAATCTAATAGC 59.327 43.478 37.03 7.99 42.21 2.97
2547 3823 6.967199 TCTATCGCACGTGCATAATCTAATAG 59.033 38.462 37.03 25.00 42.21 1.73
2548 3824 6.848451 TCTATCGCACGTGCATAATCTAATA 58.152 36.000 37.03 18.84 42.21 0.98
2549 3825 5.709966 TCTATCGCACGTGCATAATCTAAT 58.290 37.500 37.03 18.74 42.21 1.73
2550 3826 5.116069 TCTATCGCACGTGCATAATCTAA 57.884 39.130 37.03 13.59 42.21 2.10
2551 3827 4.759516 TCTATCGCACGTGCATAATCTA 57.240 40.909 37.03 17.83 42.21 1.98
2552 3828 3.643159 TCTATCGCACGTGCATAATCT 57.357 42.857 37.03 17.68 42.21 2.40
2553 3829 7.679659 TTATATCTATCGCACGTGCATAATC 57.320 36.000 37.03 9.88 42.21 1.75
2554 3830 8.474006 TTTTATATCTATCGCACGTGCATAAT 57.526 30.769 37.03 27.46 42.21 1.28
2555 3831 7.876896 TTTTATATCTATCGCACGTGCATAA 57.123 32.000 37.03 26.39 42.21 1.90
2556 3832 7.876896 TTTTTATATCTATCGCACGTGCATA 57.123 32.000 37.03 28.53 42.21 3.14
2557 3833 6.779115 TTTTTATATCTATCGCACGTGCAT 57.221 33.333 37.03 28.89 42.21 3.96
2579 3855 5.065235 CCTGGCATTTGGTTCAGAATTTTT 58.935 37.500 0.00 0.00 0.00 1.94
2580 3856 4.347583 TCCTGGCATTTGGTTCAGAATTTT 59.652 37.500 0.00 0.00 0.00 1.82
2581 3857 3.903090 TCCTGGCATTTGGTTCAGAATTT 59.097 39.130 0.00 0.00 0.00 1.82
2582 3858 3.509442 TCCTGGCATTTGGTTCAGAATT 58.491 40.909 0.00 0.00 0.00 2.17
2583 3859 3.173953 TCCTGGCATTTGGTTCAGAAT 57.826 42.857 0.00 0.00 0.00 2.40
2584 3860 2.673775 TCCTGGCATTTGGTTCAGAA 57.326 45.000 0.00 0.00 0.00 3.02
2585 3861 2.041485 TCATCCTGGCATTTGGTTCAGA 59.959 45.455 0.00 0.00 0.00 3.27
2586 3862 2.426024 CTCATCCTGGCATTTGGTTCAG 59.574 50.000 0.00 0.00 0.00 3.02
2587 3863 2.041485 TCTCATCCTGGCATTTGGTTCA 59.959 45.455 0.00 0.00 0.00 3.18
2588 3864 2.726821 TCTCATCCTGGCATTTGGTTC 58.273 47.619 0.00 0.00 0.00 3.62
2589 3865 2.905415 TCTCATCCTGGCATTTGGTT 57.095 45.000 0.00 0.00 0.00 3.67
2590 3866 4.467769 CTTATCTCATCCTGGCATTTGGT 58.532 43.478 0.00 0.00 0.00 3.67
2591 3867 3.825014 CCTTATCTCATCCTGGCATTTGG 59.175 47.826 0.00 0.00 0.00 3.28
2592 3868 4.518211 GTCCTTATCTCATCCTGGCATTTG 59.482 45.833 0.00 0.00 0.00 2.32
2593 3869 4.414846 AGTCCTTATCTCATCCTGGCATTT 59.585 41.667 0.00 0.00 0.00 2.32
2594 3870 3.979347 AGTCCTTATCTCATCCTGGCATT 59.021 43.478 0.00 0.00 0.00 3.56
2595 3871 3.596101 AGTCCTTATCTCATCCTGGCAT 58.404 45.455 0.00 0.00 0.00 4.40
2596 3872 3.051940 AGTCCTTATCTCATCCTGGCA 57.948 47.619 0.00 0.00 0.00 4.92
2597 3873 4.429854 AAAGTCCTTATCTCATCCTGGC 57.570 45.455 0.00 0.00 0.00 4.85
2598 3874 7.366847 TCTAAAAGTCCTTATCTCATCCTGG 57.633 40.000 0.00 0.00 0.00 4.45
2599 3875 9.270640 CATTCTAAAAGTCCTTATCTCATCCTG 57.729 37.037 0.00 0.00 0.00 3.86
2600 3876 8.997734 ACATTCTAAAAGTCCTTATCTCATCCT 58.002 33.333 0.00 0.00 0.00 3.24
2628 3904 9.896645 ACATCACTCAGACATACTTTATGAAAT 57.103 29.630 0.16 0.00 39.45 2.17
2629 3905 9.371136 GACATCACTCAGACATACTTTATGAAA 57.629 33.333 0.16 0.00 39.45 2.69
2630 3906 8.531146 TGACATCACTCAGACATACTTTATGAA 58.469 33.333 0.16 0.00 39.45 2.57
2631 3907 8.066612 TGACATCACTCAGACATACTTTATGA 57.933 34.615 0.16 0.00 39.45 2.15
2632 3908 8.762426 CATGACATCACTCAGACATACTTTATG 58.238 37.037 0.00 0.00 41.88 1.90
2633 3909 8.699130 TCATGACATCACTCAGACATACTTTAT 58.301 33.333 0.00 0.00 0.00 1.40
2634 3910 8.066612 TCATGACATCACTCAGACATACTTTA 57.933 34.615 0.00 0.00 0.00 1.85
2635 3911 6.939622 TCATGACATCACTCAGACATACTTT 58.060 36.000 0.00 0.00 0.00 2.66
2636 3912 6.535963 TCATGACATCACTCAGACATACTT 57.464 37.500 0.00 0.00 0.00 2.24
2637 3913 6.323225 TCATCATGACATCACTCAGACATACT 59.677 38.462 0.00 0.00 0.00 2.12
2638 3914 6.510536 TCATCATGACATCACTCAGACATAC 58.489 40.000 0.00 0.00 0.00 2.39
2639 3915 6.548622 TCTCATCATGACATCACTCAGACATA 59.451 38.462 0.00 0.00 0.00 2.29
2640 3916 5.363005 TCTCATCATGACATCACTCAGACAT 59.637 40.000 0.00 0.00 0.00 3.06
2641 3917 4.708421 TCTCATCATGACATCACTCAGACA 59.292 41.667 0.00 0.00 0.00 3.41
2642 3918 5.259832 TCTCATCATGACATCACTCAGAC 57.740 43.478 0.00 0.00 0.00 3.51
2643 3919 7.255871 CCTTATCTCATCATGACATCACTCAGA 60.256 40.741 0.00 0.00 0.00 3.27
2644 3920 6.869388 CCTTATCTCATCATGACATCACTCAG 59.131 42.308 0.00 0.00 0.00 3.35
2645 3921 6.239515 CCCTTATCTCATCATGACATCACTCA 60.240 42.308 0.00 0.00 0.00 3.41
2646 3922 6.014755 TCCCTTATCTCATCATGACATCACTC 60.015 42.308 0.00 0.00 0.00 3.51
2647 3923 5.842874 TCCCTTATCTCATCATGACATCACT 59.157 40.000 0.00 0.00 0.00 3.41
2648 3924 5.931146 GTCCCTTATCTCATCATGACATCAC 59.069 44.000 0.00 0.00 0.00 3.06
2649 3925 5.842874 AGTCCCTTATCTCATCATGACATCA 59.157 40.000 0.00 0.00 0.00 3.07
2650 3926 6.357579 AGTCCCTTATCTCATCATGACATC 57.642 41.667 0.00 0.00 0.00 3.06
2651 3927 6.760440 AAGTCCCTTATCTCATCATGACAT 57.240 37.500 0.00 0.00 0.00 3.06
2652 3928 6.566079 AAAGTCCCTTATCTCATCATGACA 57.434 37.500 0.00 0.00 0.00 3.58
2653 3929 8.964476 TTAAAAGTCCCTTATCTCATCATGAC 57.036 34.615 0.00 0.00 0.00 3.06
2654 3930 9.973661 TTTTAAAAGTCCCTTATCTCATCATGA 57.026 29.630 0.00 0.00 0.00 3.07
2657 3933 9.807921 ACTTTTTAAAAGTCCCTTATCTCATCA 57.192 29.630 16.34 0.00 0.00 3.07
2659 3935 9.807921 TGACTTTTTAAAAGTCCCTTATCTCAT 57.192 29.630 33.80 7.79 44.47 2.90
2660 3936 9.807921 ATGACTTTTTAAAAGTCCCTTATCTCA 57.192 29.630 33.80 20.26 44.47 3.27
2704 3980 4.052159 ATCAAGTCGTGATGAGACCATC 57.948 45.455 0.01 0.00 45.69 3.51
2705 3981 4.478206 AATCAAGTCGTGATGAGACCAT 57.522 40.909 1.78 0.00 46.80 3.55
2706 3982 3.961480 AATCAAGTCGTGATGAGACCA 57.039 42.857 1.78 0.00 46.80 4.02
2707 3983 4.932200 AGAAAATCAAGTCGTGATGAGACC 59.068 41.667 1.78 0.00 46.80 3.85
2708 3984 7.449027 GTTAGAAAATCAAGTCGTGATGAGAC 58.551 38.462 1.78 0.00 46.80 3.36
2709 3985 6.308041 CGTTAGAAAATCAAGTCGTGATGAGA 59.692 38.462 1.78 0.00 46.80 3.27
2710 3986 6.461816 CGTTAGAAAATCAAGTCGTGATGAG 58.538 40.000 1.78 0.00 46.80 2.90
2711 3987 5.163992 GCGTTAGAAAATCAAGTCGTGATGA 60.164 40.000 1.78 0.00 46.80 2.92
2712 3988 5.015733 GCGTTAGAAAATCAAGTCGTGATG 58.984 41.667 1.78 0.00 46.80 3.07
2714 3990 3.120616 CGCGTTAGAAAATCAAGTCGTGA 59.879 43.478 0.00 0.00 41.67 4.35
2715 3991 3.121126 ACGCGTTAGAAAATCAAGTCGTG 60.121 43.478 5.58 0.00 0.00 4.35
2716 3992 3.054878 ACGCGTTAGAAAATCAAGTCGT 58.945 40.909 5.58 0.00 0.00 4.34
2717 3993 3.120616 TGACGCGTTAGAAAATCAAGTCG 59.879 43.478 15.53 0.00 0.00 4.18
2718 3994 4.640805 TGACGCGTTAGAAAATCAAGTC 57.359 40.909 15.53 0.00 0.00 3.01
2719 3995 6.531439 GTTATGACGCGTTAGAAAATCAAGT 58.469 36.000 15.53 0.00 0.00 3.16
2720 3996 5.666878 CGTTATGACGCGTTAGAAAATCAAG 59.333 40.000 15.53 0.00 43.03 3.02
2721 3997 5.543716 CGTTATGACGCGTTAGAAAATCAA 58.456 37.500 15.53 0.00 43.03 2.57
2722 3998 5.121071 CGTTATGACGCGTTAGAAAATCA 57.879 39.130 15.53 3.95 43.03 2.57
2746 4022 3.705604 CAGTTTGCTCACCGACATTTTT 58.294 40.909 0.00 0.00 0.00 1.94
2747 4023 2.543653 GCAGTTTGCTCACCGACATTTT 60.544 45.455 0.00 0.00 40.96 1.82
2748 4024 1.001378 GCAGTTTGCTCACCGACATTT 60.001 47.619 0.00 0.00 40.96 2.32
2749 4025 0.593128 GCAGTTTGCTCACCGACATT 59.407 50.000 0.00 0.00 40.96 2.71
2750 4026 0.534877 TGCAGTTTGCTCACCGACAT 60.535 50.000 2.48 0.00 45.31 3.06
2751 4027 0.534877 ATGCAGTTTGCTCACCGACA 60.535 50.000 2.48 0.00 45.31 4.35
2752 4028 0.593128 AATGCAGTTTGCTCACCGAC 59.407 50.000 2.48 0.00 45.31 4.79
2753 4029 0.592637 CAATGCAGTTTGCTCACCGA 59.407 50.000 2.48 0.00 45.31 4.69
2754 4030 0.592637 TCAATGCAGTTTGCTCACCG 59.407 50.000 2.48 0.00 45.31 4.94
2755 4031 2.602878 CATCAATGCAGTTTGCTCACC 58.397 47.619 2.48 0.00 45.31 4.02
2756 4032 2.229543 TCCATCAATGCAGTTTGCTCAC 59.770 45.455 2.48 0.00 45.31 3.51
2757 4033 2.229543 GTCCATCAATGCAGTTTGCTCA 59.770 45.455 2.48 0.00 45.31 4.26
2758 4034 2.229543 TGTCCATCAATGCAGTTTGCTC 59.770 45.455 2.48 0.00 45.31 4.26
2759 4035 2.029649 GTGTCCATCAATGCAGTTTGCT 60.030 45.455 2.48 0.00 45.31 3.91
2760 4036 2.029649 AGTGTCCATCAATGCAGTTTGC 60.030 45.455 0.00 0.00 45.29 3.68
2761 4037 3.571571 CAGTGTCCATCAATGCAGTTTG 58.428 45.455 0.00 0.00 35.41 2.93
2762 4038 3.928727 CAGTGTCCATCAATGCAGTTT 57.071 42.857 0.00 0.00 35.41 2.66
2768 4044 2.014857 CTCAGGCAGTGTCCATCAATG 58.985 52.381 6.40 0.00 43.82 2.82
2769 4045 1.681166 GCTCAGGCAGTGTCCATCAAT 60.681 52.381 6.40 0.00 38.54 2.57
2770 4046 0.321919 GCTCAGGCAGTGTCCATCAA 60.322 55.000 6.40 0.00 38.54 2.57
2771 4047 1.196766 AGCTCAGGCAGTGTCCATCA 61.197 55.000 6.40 0.00 41.70 3.07
2772 4048 0.826715 TAGCTCAGGCAGTGTCCATC 59.173 55.000 0.00 0.00 41.70 3.51
2773 4049 0.829333 CTAGCTCAGGCAGTGTCCAT 59.171 55.000 0.00 0.00 41.70 3.41
2774 4050 0.251787 TCTAGCTCAGGCAGTGTCCA 60.252 55.000 0.00 0.00 41.70 4.02
2775 4051 0.174617 GTCTAGCTCAGGCAGTGTCC 59.825 60.000 0.00 0.00 41.70 4.02
2776 4052 1.135141 CAGTCTAGCTCAGGCAGTGTC 60.135 57.143 0.00 0.00 41.70 3.67
2777 4053 0.894141 CAGTCTAGCTCAGGCAGTGT 59.106 55.000 0.00 0.00 41.70 3.55
2778 4054 1.180907 TCAGTCTAGCTCAGGCAGTG 58.819 55.000 0.00 0.00 41.70 3.66
2779 4055 1.755959 CATCAGTCTAGCTCAGGCAGT 59.244 52.381 0.00 0.00 41.70 4.40
2780 4056 1.068895 CCATCAGTCTAGCTCAGGCAG 59.931 57.143 0.00 0.00 41.70 4.85
2781 4057 1.117994 CCATCAGTCTAGCTCAGGCA 58.882 55.000 0.00 0.00 41.70 4.75
2782 4058 0.392336 CCCATCAGTCTAGCTCAGGC 59.608 60.000 0.00 0.00 39.06 4.85
2783 4059 1.411977 CACCCATCAGTCTAGCTCAGG 59.588 57.143 0.00 0.00 0.00 3.86
2784 4060 2.361757 CTCACCCATCAGTCTAGCTCAG 59.638 54.545 0.00 0.00 0.00 3.35
2785 4061 2.291865 ACTCACCCATCAGTCTAGCTCA 60.292 50.000 0.00 0.00 0.00 4.26
2786 4062 2.100584 CACTCACCCATCAGTCTAGCTC 59.899 54.545 0.00 0.00 0.00 4.09
2787 4063 2.106566 CACTCACCCATCAGTCTAGCT 58.893 52.381 0.00 0.00 0.00 3.32
2788 4064 1.472376 GCACTCACCCATCAGTCTAGC 60.472 57.143 0.00 0.00 0.00 3.42
2789 4065 1.137872 GGCACTCACCCATCAGTCTAG 59.862 57.143 0.00 0.00 0.00 2.43
2790 4066 1.195115 GGCACTCACCCATCAGTCTA 58.805 55.000 0.00 0.00 0.00 2.59
2791 4067 0.546267 AGGCACTCACCCATCAGTCT 60.546 55.000 0.00 0.00 0.00 3.24
2792 4068 1.986413 AGGCACTCACCCATCAGTC 59.014 57.895 0.00 0.00 0.00 3.51
2793 4069 4.239991 AGGCACTCACCCATCAGT 57.760 55.556 0.00 0.00 0.00 3.41
2805 4081 1.153549 CTAGGTCAAGGCGAGGCAC 60.154 63.158 0.00 0.00 0.00 5.01
2806 4082 3.019003 GCTAGGTCAAGGCGAGGCA 62.019 63.158 0.00 0.00 0.00 4.75
2807 4083 2.202946 GCTAGGTCAAGGCGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
2812 4088 0.179108 CCACTACGCTAGGTCAAGGC 60.179 60.000 0.00 0.00 0.00 4.35
2813 4089 1.135083 CACCACTACGCTAGGTCAAGG 60.135 57.143 0.00 0.00 32.15 3.61
2814 4090 1.544691 ACACCACTACGCTAGGTCAAG 59.455 52.381 0.00 0.00 32.15 3.02
2815 4091 1.624336 ACACCACTACGCTAGGTCAA 58.376 50.000 0.00 0.00 32.15 3.18
2816 4092 1.624336 AACACCACTACGCTAGGTCA 58.376 50.000 0.00 0.00 32.15 4.02
2817 4093 2.738013 AAACACCACTACGCTAGGTC 57.262 50.000 0.00 0.00 32.15 3.85
2818 4094 5.920193 TTATAAACACCACTACGCTAGGT 57.080 39.130 0.00 0.00 35.65 3.08
2819 4095 9.136952 GATTATTATAAACACCACTACGCTAGG 57.863 37.037 0.00 0.00 0.00 3.02
2820 4096 9.687210 TGATTATTATAAACACCACTACGCTAG 57.313 33.333 0.00 0.00 0.00 3.42
2821 4097 9.687210 CTGATTATTATAAACACCACTACGCTA 57.313 33.333 0.00 0.00 0.00 4.26
2822 4098 8.202137 ACTGATTATTATAAACACCACTACGCT 58.798 33.333 0.00 0.00 0.00 5.07
2823 4099 8.361592 ACTGATTATTATAAACACCACTACGC 57.638 34.615 0.00 0.00 0.00 4.42
2868 4144 9.905713 TTCTATTTTTCCTTCATACACAGCTAT 57.094 29.630 0.00 0.00 0.00 2.97
2869 4145 9.733556 TTTCTATTTTTCCTTCATACACAGCTA 57.266 29.630 0.00 0.00 0.00 3.32
2870 4146 8.635765 TTTCTATTTTTCCTTCATACACAGCT 57.364 30.769 0.00 0.00 0.00 4.24
2871 4147 9.860898 AATTTCTATTTTTCCTTCATACACAGC 57.139 29.630 0.00 0.00 0.00 4.40
2921 4197 9.268268 TGACACGACTTTCTATGAGTTAATTTT 57.732 29.630 0.00 0.00 0.00 1.82
2922 4198 8.827177 TGACACGACTTTCTATGAGTTAATTT 57.173 30.769 0.00 0.00 0.00 1.82
2923 4199 8.709646 GTTGACACGACTTTCTATGAGTTAATT 58.290 33.333 0.00 0.00 0.00 1.40
2924 4200 8.088981 AGTTGACACGACTTTCTATGAGTTAAT 58.911 33.333 0.00 0.00 0.00 1.40
2925 4201 7.431249 AGTTGACACGACTTTCTATGAGTTAA 58.569 34.615 0.00 0.00 0.00 2.01
2926 4202 6.978338 AGTTGACACGACTTTCTATGAGTTA 58.022 36.000 0.00 0.00 0.00 2.24
2927 4203 5.844004 AGTTGACACGACTTTCTATGAGTT 58.156 37.500 0.00 0.00 0.00 3.01
2928 4204 5.455056 AGTTGACACGACTTTCTATGAGT 57.545 39.130 0.00 0.00 0.00 3.41
2929 4205 6.771188 AAAGTTGACACGACTTTCTATGAG 57.229 37.500 10.25 0.00 42.06 2.90
2930 4206 6.759356 TCAAAAGTTGACACGACTTTCTATGA 59.241 34.615 14.75 12.52 44.24 2.15
2931 4207 6.943981 TCAAAAGTTGACACGACTTTCTATG 58.056 36.000 14.75 10.94 44.24 2.23
2932 4208 6.202954 CCTCAAAAGTTGACACGACTTTCTAT 59.797 38.462 14.75 1.18 44.24 1.98
2933 4209 5.522460 CCTCAAAAGTTGACACGACTTTCTA 59.478 40.000 14.75 7.64 44.24 2.10
2934 4210 4.332819 CCTCAAAAGTTGACACGACTTTCT 59.667 41.667 14.75 5.88 44.24 2.52
2935 4211 4.495844 CCCTCAAAAGTTGACACGACTTTC 60.496 45.833 14.75 0.00 44.24 2.62
2936 4212 3.377172 CCCTCAAAAGTTGACACGACTTT 59.623 43.478 10.25 10.25 46.27 2.66
2937 4213 2.943033 CCCTCAAAAGTTGACACGACTT 59.057 45.455 0.00 0.00 38.92 3.01
2938 4214 2.561569 CCCTCAAAAGTTGACACGACT 58.438 47.619 0.00 0.00 35.46 4.18
2939 4215 1.002792 GCCCTCAAAAGTTGACACGAC 60.003 52.381 0.00 0.00 35.46 4.34
2940 4216 1.134220 AGCCCTCAAAAGTTGACACGA 60.134 47.619 0.00 0.00 35.46 4.35
2941 4217 1.264288 GAGCCCTCAAAAGTTGACACG 59.736 52.381 0.00 0.00 35.46 4.49
2942 4218 2.291741 CTGAGCCCTCAAAAGTTGACAC 59.708 50.000 0.00 0.00 39.39 3.67
2943 4219 2.575532 CTGAGCCCTCAAAAGTTGACA 58.424 47.619 0.00 0.00 39.39 3.58
2944 4220 1.268079 GCTGAGCCCTCAAAAGTTGAC 59.732 52.381 0.00 0.00 39.39 3.18
2945 4221 1.609208 GCTGAGCCCTCAAAAGTTGA 58.391 50.000 0.00 0.00 39.39 3.18
2946 4222 0.239347 CGCTGAGCCCTCAAAAGTTG 59.761 55.000 0.00 0.00 39.39 3.16
2947 4223 0.179018 ACGCTGAGCCCTCAAAAGTT 60.179 50.000 0.00 0.00 39.39 2.66
2948 4224 0.179018 AACGCTGAGCCCTCAAAAGT 60.179 50.000 0.00 0.00 39.39 2.66
2949 4225 0.239347 CAACGCTGAGCCCTCAAAAG 59.761 55.000 0.00 0.00 39.39 2.27
2950 4226 0.465460 ACAACGCTGAGCCCTCAAAA 60.465 50.000 0.00 0.00 39.39 2.44
2951 4227 0.394938 TACAACGCTGAGCCCTCAAA 59.605 50.000 0.00 0.00 39.39 2.69
2952 4228 0.320421 GTACAACGCTGAGCCCTCAA 60.320 55.000 0.00 0.00 39.39 3.02
2953 4229 1.292223 GTACAACGCTGAGCCCTCA 59.708 57.895 0.00 0.00 38.06 3.86
2954 4230 0.320421 TTGTACAACGCTGAGCCCTC 60.320 55.000 3.59 0.00 0.00 4.30
2955 4231 0.320771 CTTGTACAACGCTGAGCCCT 60.321 55.000 3.59 0.00 0.00 5.19
2956 4232 0.320421 TCTTGTACAACGCTGAGCCC 60.320 55.000 3.59 0.00 0.00 5.19
2957 4233 0.790814 GTCTTGTACAACGCTGAGCC 59.209 55.000 3.59 0.00 0.00 4.70



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.