Multiple sequence alignment - TraesCS5D01G366800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G366800 chr5D 100.000 3402 0 0 1 3402 443501471 443504872 0.000000e+00 6283.0
1 TraesCS5D01G366800 chr5D 86.486 555 44 19 1442 1966 25521112 25521665 6.330000e-162 580.0
2 TraesCS5D01G366800 chr5D 81.447 636 83 18 184 787 443002008 443002640 3.950000e-134 488.0
3 TraesCS5D01G366800 chr5D 83.523 528 63 13 289 796 35651014 35651537 3.970000e-129 472.0
4 TraesCS5D01G366800 chr5D 85.307 456 37 13 1007 1448 25520637 25521076 8.660000e-121 444.0
5 TraesCS5D01G366800 chr5B 89.019 1284 81 27 1440 2685 539934333 539935594 0.000000e+00 1535.0
6 TraesCS5D01G366800 chr5B 93.281 506 23 6 2896 3393 539935718 539936220 0.000000e+00 736.0
7 TraesCS5D01G366800 chr5B 85.572 603 44 20 850 1438 539933715 539934288 2.920000e-165 592.0
8 TraesCS5D01G366800 chr5B 80.838 668 91 27 181 814 507638830 507639494 1.100000e-134 490.0
9 TraesCS5D01G366800 chr5B 77.305 564 83 27 280 824 568186138 568185601 1.190000e-74 291.0
10 TraesCS5D01G366800 chr5B 80.912 351 51 10 480 817 646377613 646377960 2.600000e-66 263.0
11 TraesCS5D01G366800 chr5A 83.694 1662 158 64 870 2471 559744832 559746440 0.000000e+00 1463.0
12 TraesCS5D01G366800 chr5A 86.640 509 35 12 2904 3400 559746571 559747058 1.800000e-147 532.0
13 TraesCS5D01G366800 chr5A 77.224 562 77 39 280 820 608472837 608473368 7.190000e-72 281.0
14 TraesCS5D01G366800 chr5A 79.915 234 40 7 579 808 381709153 381708923 7.550000e-37 165.0
15 TraesCS5D01G366800 chr5A 92.079 101 4 1 1 101 559744529 559744625 4.580000e-29 139.0
16 TraesCS5D01G366800 chr1A 85.636 550 46 17 1448 1966 212156396 212155849 6.420000e-152 547.0
17 TraesCS5D01G366800 chr1A 85.088 456 38 20 1007 1448 212156877 212156438 4.030000e-119 438.0
18 TraesCS5D01G366800 chr3D 82.249 676 75 23 181 824 90832324 90831662 2.990000e-150 542.0
19 TraesCS5D01G366800 chr3D 84.430 456 41 14 1007 1448 350069696 350070135 4.060000e-114 422.0
20 TraesCS5D01G366800 chr3D 84.986 353 24 11 1643 1966 350070246 350070598 7.040000e-87 331.0
21 TraesCS5D01G366800 chr4A 85.064 549 51 15 1448 1966 519262415 519261868 6.460000e-147 531.0
22 TraesCS5D01G366800 chr4A 86.190 210 19 8 1007 1214 519263807 519263606 5.720000e-53 219.0
23 TraesCS5D01G366800 chr3B 81.748 652 84 21 181 802 673299466 673300112 2.340000e-141 512.0
24 TraesCS5D01G366800 chr3B 80.545 550 79 20 280 812 562704800 562704262 6.840000e-107 398.0
25 TraesCS5D01G366800 chr3B 77.132 551 84 22 281 813 762605644 762606170 7.190000e-72 281.0
26 TraesCS5D01G366800 chr3B 100.000 28 0 0 2833 2860 789493268 789493241 6.000000e-03 52.8
27 TraesCS5D01G366800 chr6B 81.037 675 84 26 182 817 679283029 679282360 6.560000e-137 497.0
28 TraesCS5D01G366800 chr6B 88.961 154 13 4 1448 1599 99588438 99588589 1.610000e-43 187.0
29 TraesCS5D01G366800 chr6B 87.013 154 16 4 1448 1599 711837571 711837722 1.620000e-38 171.0
30 TraesCS5D01G366800 chr1B 80.689 668 92 23 167 800 600968565 600969229 5.100000e-133 484.0
31 TraesCS5D01G366800 chr1B 91.463 82 7 0 2743 2824 208443267 208443186 2.770000e-21 113.0
32 TraesCS5D01G366800 chr7D 84.739 498 56 12 194 671 113175325 113174828 6.600000e-132 481.0
33 TraesCS5D01G366800 chr2D 81.496 508 67 15 166 651 589506833 589507335 3.180000e-105 392.0
34 TraesCS5D01G366800 chr2D 82.932 457 47 14 1006 1448 80827807 80828246 1.920000e-102 383.0
35 TraesCS5D01G366800 chr2D 84.181 354 25 12 1643 1966 80828357 80828709 7.090000e-82 315.0
36 TraesCS5D01G366800 chr2B 83.333 426 40 14 1007 1417 35048739 35048330 6.940000e-97 364.0
37 TraesCS5D01G366800 chr2A 81.250 432 57 11 401 819 544304209 544303789 9.100000e-86 327.0
38 TraesCS5D01G366800 chr7A 77.500 560 84 24 280 821 437074900 437074365 7.140000e-77 298.0
39 TraesCS5D01G366800 chr6A 79.859 427 54 17 1007 1417 587389773 587390183 2.000000e-72 283.0
40 TraesCS5D01G366800 chr6A 77.150 407 69 18 416 819 126351754 126352139 7.390000e-52 215.0
41 TraesCS5D01G366800 chr4B 80.899 267 24 10 1007 1258 144284399 144284653 5.800000e-43 185.0
42 TraesCS5D01G366800 chr4B 89.474 76 7 1 2127 2202 438378692 438378766 1.010000e-15 95.3
43 TraesCS5D01G366800 chr4D 96.341 82 3 0 2743 2824 259155440 259155521 5.920000e-28 135.0
44 TraesCS5D01G366800 chr6D 89.286 84 1 2 2743 2826 327599326 327599401 7.770000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G366800 chr5D 443501471 443504872 3401 False 6283.000000 6283 100.000000 1 3402 1 chr5D.!!$F3 3401
1 TraesCS5D01G366800 chr5D 25520637 25521665 1028 False 512.000000 580 85.896500 1007 1966 2 chr5D.!!$F4 959
2 TraesCS5D01G366800 chr5D 443002008 443002640 632 False 488.000000 488 81.447000 184 787 1 chr5D.!!$F2 603
3 TraesCS5D01G366800 chr5D 35651014 35651537 523 False 472.000000 472 83.523000 289 796 1 chr5D.!!$F1 507
4 TraesCS5D01G366800 chr5B 539933715 539936220 2505 False 954.333333 1535 89.290667 850 3393 3 chr5B.!!$F3 2543
5 TraesCS5D01G366800 chr5B 507638830 507639494 664 False 490.000000 490 80.838000 181 814 1 chr5B.!!$F1 633
6 TraesCS5D01G366800 chr5B 568185601 568186138 537 True 291.000000 291 77.305000 280 824 1 chr5B.!!$R1 544
7 TraesCS5D01G366800 chr5A 559744529 559747058 2529 False 711.333333 1463 87.471000 1 3400 3 chr5A.!!$F2 3399
8 TraesCS5D01G366800 chr5A 608472837 608473368 531 False 281.000000 281 77.224000 280 820 1 chr5A.!!$F1 540
9 TraesCS5D01G366800 chr1A 212155849 212156877 1028 True 492.500000 547 85.362000 1007 1966 2 chr1A.!!$R1 959
10 TraesCS5D01G366800 chr3D 90831662 90832324 662 True 542.000000 542 82.249000 181 824 1 chr3D.!!$R1 643
11 TraesCS5D01G366800 chr3D 350069696 350070598 902 False 376.500000 422 84.708000 1007 1966 2 chr3D.!!$F1 959
12 TraesCS5D01G366800 chr4A 519261868 519263807 1939 True 375.000000 531 85.627000 1007 1966 2 chr4A.!!$R1 959
13 TraesCS5D01G366800 chr3B 673299466 673300112 646 False 512.000000 512 81.748000 181 802 1 chr3B.!!$F1 621
14 TraesCS5D01G366800 chr3B 562704262 562704800 538 True 398.000000 398 80.545000 280 812 1 chr3B.!!$R1 532
15 TraesCS5D01G366800 chr3B 762605644 762606170 526 False 281.000000 281 77.132000 281 813 1 chr3B.!!$F2 532
16 TraesCS5D01G366800 chr6B 679282360 679283029 669 True 497.000000 497 81.037000 182 817 1 chr6B.!!$R1 635
17 TraesCS5D01G366800 chr1B 600968565 600969229 664 False 484.000000 484 80.689000 167 800 1 chr1B.!!$F1 633
18 TraesCS5D01G366800 chr2D 589506833 589507335 502 False 392.000000 392 81.496000 166 651 1 chr2D.!!$F1 485
19 TraesCS5D01G366800 chr2D 80827807 80828709 902 False 349.000000 383 83.556500 1006 1966 2 chr2D.!!$F2 960
20 TraesCS5D01G366800 chr7A 437074365 437074900 535 True 298.000000 298 77.500000 280 821 1 chr7A.!!$R1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 846 0.032952 TCGCTTCGGTGCTTGTAGTT 59.967 50.0 0.00 0.0 0.0 2.24 F
1606 2773 0.317269 CAGCGCCACACTGTTTCTTG 60.317 55.0 2.29 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2220 3559 0.033796 ACCCAGACATCAGGGCAATG 60.034 55.0 9.2 0.0 45.71 2.82 R
2752 4104 0.109723 GTACCTGTTTGCCCACTCCA 59.890 55.0 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.824936 CACATTGGCTTGGTGGAATACA 59.175 45.455 0.00 0.00 0.00 2.29
63 64 1.686355 TGGACGTCCAAGCAACATTT 58.314 45.000 34.60 0.00 44.35 2.32
86 87 1.670083 GGTTTACGCTCACGCCCTT 60.670 57.895 0.00 0.00 45.53 3.95
93 94 0.179189 CGCTCACGCCCTTGATTTTC 60.179 55.000 0.00 0.00 0.00 2.29
101 102 2.799978 CGCCCTTGATTTTCACCAAAAC 59.200 45.455 0.00 0.00 34.24 2.43
102 103 3.138304 GCCCTTGATTTTCACCAAAACC 58.862 45.455 0.00 0.00 34.24 3.27
106 107 3.090952 TGATTTTCACCAAAACCGCTG 57.909 42.857 0.00 0.00 34.24 5.18
108 109 3.118956 TGATTTTCACCAAAACCGCTGTT 60.119 39.130 0.00 0.00 34.24 3.16
109 110 3.320673 TTTTCACCAAAACCGCTGTTT 57.679 38.095 0.00 0.00 46.50 2.83
110 111 2.570442 TTCACCAAAACCGCTGTTTC 57.430 45.000 6.71 0.00 43.80 2.78
115 185 3.061965 CACCAAAACCGCTGTTTCTTTTG 59.938 43.478 6.71 1.92 43.80 2.44
116 186 3.056465 ACCAAAACCGCTGTTTCTTTTGA 60.056 39.130 6.71 0.00 43.80 2.69
122 192 3.945285 ACCGCTGTTTCTTTTGAGAGAAA 59.055 39.130 0.00 0.00 41.88 2.52
141 211 9.727627 GAGAGAAATTCATTTAGCTAACATTGG 57.272 33.333 5.45 0.00 0.00 3.16
142 212 9.466497 AGAGAAATTCATTTAGCTAACATTGGA 57.534 29.630 5.45 0.00 0.00 3.53
143 213 9.508567 GAGAAATTCATTTAGCTAACATTGGAC 57.491 33.333 5.45 0.00 0.00 4.02
144 214 8.184192 AGAAATTCATTTAGCTAACATTGGACG 58.816 33.333 5.45 0.00 0.00 4.79
145 215 7.624360 AATTCATTTAGCTAACATTGGACGA 57.376 32.000 5.45 0.00 0.00 4.20
146 216 6.417191 TTCATTTAGCTAACATTGGACGAC 57.583 37.500 5.45 0.00 0.00 4.34
147 217 4.873827 TCATTTAGCTAACATTGGACGACC 59.126 41.667 5.45 0.00 0.00 4.79
148 218 2.973694 TAGCTAACATTGGACGACCC 57.026 50.000 0.34 0.00 34.81 4.46
149 219 0.108329 AGCTAACATTGGACGACCCG 60.108 55.000 0.34 0.00 37.93 5.28
150 220 1.702491 GCTAACATTGGACGACCCGC 61.702 60.000 0.34 0.00 37.93 6.13
151 221 0.108329 CTAACATTGGACGACCCGCT 60.108 55.000 0.34 0.00 37.93 5.52
152 222 0.390603 TAACATTGGACGACCCGCTG 60.391 55.000 0.34 0.00 37.93 5.18
153 223 3.499737 CATTGGACGACCCGCTGC 61.500 66.667 0.34 0.00 37.93 5.25
154 224 3.706373 ATTGGACGACCCGCTGCT 61.706 61.111 0.34 0.00 37.93 4.24
155 225 3.958147 ATTGGACGACCCGCTGCTG 62.958 63.158 0.34 0.00 37.93 4.41
160 230 4.827087 CGACCCGCTGCTGCATCT 62.827 66.667 16.29 0.00 39.64 2.90
161 231 2.501128 GACCCGCTGCTGCATCTA 59.499 61.111 16.29 0.00 39.64 1.98
162 232 1.593750 GACCCGCTGCTGCATCTAG 60.594 63.158 16.29 0.00 39.64 2.43
163 233 2.971413 CCCGCTGCTGCATCTAGC 60.971 66.667 16.29 1.64 43.95 3.42
164 234 2.971413 CCGCTGCTGCATCTAGCC 60.971 66.667 16.29 0.00 44.83 3.93
208 280 2.125912 CAGCCGCGCTAGTGTTCT 60.126 61.111 5.56 0.00 36.40 3.01
255 334 2.030540 CGGTTTACCTCGTCTCTTGTGA 60.031 50.000 0.00 0.00 0.00 3.58
383 487 4.508662 CGGCTCTCTGAAGAATAAGGTTT 58.491 43.478 0.00 0.00 0.00 3.27
448 553 0.883370 GGTCGTGTGGAGGTTTGTCC 60.883 60.000 0.00 0.00 37.10 4.02
509 625 4.470764 TCCACATGGATCCGGTCA 57.529 55.556 7.39 0.00 39.78 4.02
535 653 3.787785 TCGTGTGTGTTTGTGTGTCTAT 58.212 40.909 0.00 0.00 0.00 1.98
588 707 2.946762 GGCGACAGTTGCTGTTCC 59.053 61.111 12.78 4.85 45.44 3.62
602 722 3.636231 TTCCGGTGGCTGGTCCTG 61.636 66.667 0.00 0.00 35.26 3.86
607 728 2.670148 GGTGGCTGGTCCTGTAGGG 61.670 68.421 0.00 0.00 35.41 3.53
659 782 1.136695 CAACAAGTTTTGCCCAGCTCA 59.863 47.619 0.00 0.00 0.00 4.26
662 785 0.390492 AAGTTTTGCCCAGCTCAAGC 59.610 50.000 0.00 0.00 42.49 4.01
707 846 0.032952 TCGCTTCGGTGCTTGTAGTT 59.967 50.000 0.00 0.00 0.00 2.24
712 851 3.766151 CTTCGGTGCTTGTAGTTATCGA 58.234 45.455 0.00 0.00 0.00 3.59
861 1003 1.257750 TGGACGACTCATGGACAGGG 61.258 60.000 0.00 0.00 0.00 4.45
892 1071 0.458669 CTGCATGGGCTAGGCAAAAG 59.541 55.000 19.14 5.40 46.57 2.27
933 1115 1.548719 GGCCTGAAACCCAAACATACC 59.451 52.381 0.00 0.00 0.00 2.73
934 1116 2.243810 GCCTGAAACCCAAACATACCA 58.756 47.619 0.00 0.00 0.00 3.25
963 1149 2.273776 GCCTTGCCTCTCTTCCCC 59.726 66.667 0.00 0.00 0.00 4.81
966 1152 3.009115 TTGCCTCTCTTCCCCCGG 61.009 66.667 0.00 0.00 0.00 5.73
992 1180 7.387948 GCTAGTACATCTTTTTCTCCAAGTCAA 59.612 37.037 0.00 0.00 0.00 3.18
993 1181 7.736447 AGTACATCTTTTTCTCCAAGTCAAG 57.264 36.000 0.00 0.00 0.00 3.02
994 1182 7.283329 AGTACATCTTTTTCTCCAAGTCAAGT 58.717 34.615 0.00 0.00 0.00 3.16
995 1183 6.625873 ACATCTTTTTCTCCAAGTCAAGTC 57.374 37.500 0.00 0.00 0.00 3.01
996 1184 6.122277 ACATCTTTTTCTCCAAGTCAAGTCA 58.878 36.000 0.00 0.00 0.00 3.41
1107 1295 1.348775 ATCTTCCCCCACTAGCCTGC 61.349 60.000 0.00 0.00 0.00 4.85
1113 1301 3.465403 CCACTAGCCTGCGCTCCT 61.465 66.667 9.73 4.52 43.95 3.69
1126 1314 2.689034 CTCCTTCCCGCTTCCCCT 60.689 66.667 0.00 0.00 0.00 4.79
1130 1322 1.609783 CTTCCCGCTTCCCCTCATT 59.390 57.895 0.00 0.00 0.00 2.57
1175 1367 3.077556 GCCTCCCTCGCCTCTCAA 61.078 66.667 0.00 0.00 0.00 3.02
1178 1371 2.683933 TCCCTCGCCTCTCAACCC 60.684 66.667 0.00 0.00 0.00 4.11
1206 1400 1.134371 CCCTAGAACAGCAAGGCCTAC 60.134 57.143 5.16 0.31 0.00 3.18
1230 2336 6.138967 CAATCCTAATCCTTTCCTCCCATTT 58.861 40.000 0.00 0.00 0.00 2.32
1302 2411 7.121168 CAGATCAAGGCAAGGTAACAGAAATAA 59.879 37.037 0.00 0.00 41.41 1.40
1305 2418 5.959618 AGGCAAGGTAACAGAAATAACAC 57.040 39.130 0.00 0.00 41.41 3.32
1316 2429 4.218417 ACAGAAATAACACCCATCTGTTGC 59.782 41.667 1.13 0.00 46.22 4.17
1334 2447 6.260050 TCTGTTGCGATTTTCTTTTGACTACT 59.740 34.615 0.00 0.00 0.00 2.57
1335 2448 7.439955 TCTGTTGCGATTTTCTTTTGACTACTA 59.560 33.333 0.00 0.00 0.00 1.82
1336 2449 7.349711 TGTTGCGATTTTCTTTTGACTACTAC 58.650 34.615 0.00 0.00 0.00 2.73
1337 2450 7.011576 TGTTGCGATTTTCTTTTGACTACTACA 59.988 33.333 0.00 0.00 0.00 2.74
1338 2451 7.117241 TGCGATTTTCTTTTGACTACTACAG 57.883 36.000 0.00 0.00 0.00 2.74
1354 2467 2.844839 AGTAGATCCGCCCCTGCC 60.845 66.667 0.00 0.00 0.00 4.85
1446 2607 1.674221 GGGATAGATGAGCACGATGCC 60.674 57.143 6.39 0.00 46.52 4.40
1473 2634 0.807667 CTGTCCTACTGCCGTGATGC 60.808 60.000 0.00 0.00 0.00 3.91
1476 2637 2.586079 CTACTGCCGTGATGCCCG 60.586 66.667 0.00 0.00 0.00 6.13
1497 2658 4.320421 CCGACAAATTCAGTGCATCTTTGA 60.320 41.667 13.00 3.68 32.54 2.69
1544 2705 5.592688 TGTTTCTTTGAAAGGGAGATTTCGT 59.407 36.000 4.94 0.00 41.21 3.85
1545 2706 6.096282 TGTTTCTTTGAAAGGGAGATTTCGTT 59.904 34.615 4.94 0.00 41.21 3.85
1550 2711 3.496884 TGAAAGGGAGATTTCGTTGTTCG 59.503 43.478 0.00 0.00 41.21 3.95
1567 2728 1.729284 TCGCGGTTATTGAAGGAACC 58.271 50.000 6.13 2.53 41.52 3.62
1569 2730 0.730840 GCGGTTATTGAAGGAACCCG 59.269 55.000 6.29 0.00 41.86 5.28
1579 2740 0.770948 AAGGAACCCGGGTTTCTCCT 60.771 55.000 41.37 36.36 42.67 3.69
1590 2752 3.734463 GGGTTTCTCCTAGATTAGCAGC 58.266 50.000 0.00 0.00 36.25 5.25
1606 2773 0.317269 CAGCGCCACACTGTTTCTTG 60.317 55.000 2.29 0.00 0.00 3.02
1630 2797 6.038825 TGGAAAGAAAATTAAGCAGTTCACGA 59.961 34.615 0.00 0.00 0.00 4.35
1730 3029 5.801350 TGTTCGGTTCAGATGATTCATTC 57.199 39.130 0.00 0.00 0.00 2.67
1731 3030 5.244755 TGTTCGGTTCAGATGATTCATTCA 58.755 37.500 0.00 0.00 39.12 2.57
1733 3032 6.375174 TGTTCGGTTCAGATGATTCATTCATT 59.625 34.615 0.00 0.00 45.29 2.57
1736 3035 6.825213 TCGGTTCAGATGATTCATTCATTTCT 59.175 34.615 0.00 0.00 45.29 2.52
1741 3063 6.202379 TCAGATGATTCATTCATTTCTCTCGC 59.798 38.462 0.00 0.00 45.29 5.03
1764 3086 2.161855 TGCTCCTGTAGGCATTTGTTG 58.838 47.619 0.00 0.00 33.23 3.33
1767 3089 3.947834 GCTCCTGTAGGCATTTGTTGTAT 59.052 43.478 0.00 0.00 34.44 2.29
1773 3095 8.491134 TCCTGTAGGCATTTGTTGTATACTTAT 58.509 33.333 4.17 0.00 34.44 1.73
1774 3096 9.772973 CCTGTAGGCATTTGTTGTATACTTATA 57.227 33.333 4.17 0.00 0.00 0.98
1940 3273 1.075659 GGCCTTCCTCAACTGCCTT 59.924 57.895 0.00 0.00 39.05 4.35
2030 3363 3.157881 TCAGGTCACGATTCACTCTTCT 58.842 45.455 0.00 0.00 0.00 2.85
2088 3422 2.044123 AGCCATCCATTCTTCCGTTC 57.956 50.000 0.00 0.00 0.00 3.95
2095 3430 5.294552 CCATCCATTCTTCCGTTCTTCTAAC 59.705 44.000 0.00 0.00 0.00 2.34
2102 3437 3.754188 TCCGTTCTTCTAACGCTACTC 57.246 47.619 4.82 0.00 41.85 2.59
2129 3464 3.228243 ATTGCAGAAGGGCAGGCCA 62.228 57.895 16.94 0.00 45.88 5.36
2138 3473 2.985847 GGCAGGCCAAAGAACGCT 60.986 61.111 5.01 0.00 35.81 5.07
2177 3512 1.267574 ATCTTCAGAGGCTTGGGCGA 61.268 55.000 0.00 0.00 39.81 5.54
2220 3559 6.161855 AGTGAAAACTCTTTCCCCATTTTC 57.838 37.500 0.00 0.00 40.31 2.29
2293 3632 4.727507 ACGAGCAGTGATCTTTAGACAT 57.272 40.909 6.84 0.00 0.00 3.06
2298 3637 4.940046 AGCAGTGATCTTTAGACATTGGTG 59.060 41.667 0.00 0.00 32.63 4.17
2310 3649 5.362556 AGACATTGGTGAAGTTTGAATCG 57.637 39.130 0.00 0.00 0.00 3.34
2322 3661 6.862608 TGAAGTTTGAATCGATTTTGGATGTG 59.137 34.615 12.81 0.00 0.00 3.21
2360 3699 7.041167 GCATCAGCACAATATCAGTATGGTTTA 60.041 37.037 0.00 0.00 41.58 2.01
2392 3731 9.807649 CATGATATAATATGCACTGCACTACTA 57.192 33.333 5.67 0.00 43.04 1.82
2393 3732 9.809096 ATGATATAATATGCACTGCACTACTAC 57.191 33.333 5.67 0.00 43.04 2.73
2398 3737 6.910536 ATATGCACTGCACTACTACTTTTC 57.089 37.500 5.67 0.00 43.04 2.29
2426 3767 8.367911 TGTTTTTGAGATGAGAGTGTATGTACT 58.632 33.333 0.00 0.00 0.00 2.73
2431 3772 8.809468 TGAGATGAGAGTGTATGTACTAAACT 57.191 34.615 0.00 0.00 0.00 2.66
2472 3813 4.039004 CCTTGACTGGAGTATCAGGATCAG 59.961 50.000 0.00 0.00 38.98 2.90
2481 3822 0.388659 ATCAGGATCAGAGAGTGCGC 59.611 55.000 0.00 0.00 0.00 6.09
2485 3826 0.741326 GGATCAGAGAGTGCGCTACA 59.259 55.000 9.73 0.00 0.00 2.74
2521 3862 6.427242 AGTGTCATAGCTGAATATGATGCTTG 59.573 38.462 0.00 0.00 42.54 4.01
2552 3893 0.241481 ACGAGCGAGGAAGACTTGTC 59.759 55.000 0.00 0.00 32.77 3.18
2553 3894 0.794981 CGAGCGAGGAAGACTTGTCG 60.795 60.000 10.80 10.80 32.77 4.35
2590 3933 2.580962 TGCATACTGCCAGTTCACAAA 58.419 42.857 1.02 0.00 44.23 2.83
2591 3934 3.156293 TGCATACTGCCAGTTCACAAAT 58.844 40.909 1.02 0.00 44.23 2.32
2592 3935 3.191162 TGCATACTGCCAGTTCACAAATC 59.809 43.478 1.02 0.00 44.23 2.17
2593 3936 3.441572 GCATACTGCCAGTTCACAAATCT 59.558 43.478 1.02 0.00 37.42 2.40
2594 3937 4.635765 GCATACTGCCAGTTCACAAATCTA 59.364 41.667 1.02 0.00 37.42 1.98
2595 3938 5.297776 GCATACTGCCAGTTCACAAATCTAT 59.702 40.000 1.02 0.00 37.42 1.98
2596 3939 6.512415 GCATACTGCCAGTTCACAAATCTATC 60.512 42.308 1.02 0.00 37.42 2.08
2597 3940 3.935203 ACTGCCAGTTCACAAATCTATCG 59.065 43.478 0.00 0.00 0.00 2.92
2703 4055 7.696992 TTGGTATATTTCACTGAAAACTCCC 57.303 36.000 8.28 7.30 35.11 4.30
2704 4056 7.027874 TGGTATATTTCACTGAAAACTCCCT 57.972 36.000 8.28 0.00 35.11 4.20
2705 4057 7.466804 TGGTATATTTCACTGAAAACTCCCTT 58.533 34.615 8.28 0.00 35.11 3.95
2707 4059 8.244113 GGTATATTTCACTGAAAACTCCCTTTG 58.756 37.037 8.28 0.00 35.11 2.77
2708 4060 5.535753 ATTTCACTGAAAACTCCCTTTGG 57.464 39.130 8.28 0.00 35.11 3.28
2709 4061 2.306847 TCACTGAAAACTCCCTTTGGC 58.693 47.619 0.00 0.00 0.00 4.52
2710 4062 1.341209 CACTGAAAACTCCCTTTGGCC 59.659 52.381 0.00 0.00 0.00 5.36
2711 4063 1.217942 ACTGAAAACTCCCTTTGGCCT 59.782 47.619 3.32 0.00 0.00 5.19
2712 4064 1.615392 CTGAAAACTCCCTTTGGCCTG 59.385 52.381 3.32 0.00 0.00 4.85
2713 4065 1.063266 TGAAAACTCCCTTTGGCCTGT 60.063 47.619 3.32 0.00 0.00 4.00
2714 4066 2.175931 TGAAAACTCCCTTTGGCCTGTA 59.824 45.455 3.32 0.00 0.00 2.74
2715 4067 3.181423 TGAAAACTCCCTTTGGCCTGTAT 60.181 43.478 3.32 0.00 0.00 2.29
2717 4069 4.668138 AAACTCCCTTTGGCCTGTATTA 57.332 40.909 3.32 0.00 0.00 0.98
2718 4070 4.668138 AACTCCCTTTGGCCTGTATTAA 57.332 40.909 3.32 0.00 0.00 1.40
2719 4071 4.668138 ACTCCCTTTGGCCTGTATTAAA 57.332 40.909 3.32 0.00 0.00 1.52
2721 4073 3.361786 TCCCTTTGGCCTGTATTAAAGC 58.638 45.455 3.32 0.00 0.00 3.51
2722 4074 2.430694 CCCTTTGGCCTGTATTAAAGCC 59.569 50.000 3.32 0.00 45.96 4.35
2724 4076 3.365472 CTTTGGCCTGTATTAAAGCCCT 58.635 45.455 3.32 0.00 45.14 5.19
2725 4077 2.435372 TGGCCTGTATTAAAGCCCTG 57.565 50.000 3.32 0.00 45.14 4.45
2726 4078 1.638589 TGGCCTGTATTAAAGCCCTGT 59.361 47.619 3.32 0.00 45.14 4.00
2727 4079 2.042433 TGGCCTGTATTAAAGCCCTGTT 59.958 45.455 3.32 0.00 45.14 3.16
2728 4080 2.688446 GGCCTGTATTAAAGCCCTGTTC 59.312 50.000 0.00 0.00 39.60 3.18
2729 4081 2.354821 GCCTGTATTAAAGCCCTGTTCG 59.645 50.000 0.00 0.00 0.00 3.95
2730 4082 2.943033 CCTGTATTAAAGCCCTGTTCGG 59.057 50.000 0.00 0.00 0.00 4.30
2731 4083 3.370103 CCTGTATTAAAGCCCTGTTCGGA 60.370 47.826 0.00 0.00 33.16 4.55
2732 4084 3.869065 TGTATTAAAGCCCTGTTCGGAG 58.131 45.455 0.00 0.00 33.16 4.63
2733 4085 2.420058 ATTAAAGCCCTGTTCGGAGG 57.580 50.000 0.00 0.00 33.16 4.30
2738 4090 4.394712 CCCTGTTCGGAGGCGCTT 62.395 66.667 7.64 0.00 33.16 4.68
2739 4091 2.815647 CCTGTTCGGAGGCGCTTC 60.816 66.667 11.69 11.69 33.16 3.86
2740 4092 2.048222 CTGTTCGGAGGCGCTTCA 60.048 61.111 21.86 0.00 0.00 3.02
2741 4093 2.357034 TGTTCGGAGGCGCTTCAC 60.357 61.111 21.86 11.43 0.00 3.18
2742 4094 2.048127 GTTCGGAGGCGCTTCACT 60.048 61.111 21.86 2.15 0.00 3.41
2743 4095 1.668151 GTTCGGAGGCGCTTCACTT 60.668 57.895 21.86 0.00 0.00 3.16
2744 4096 0.389426 GTTCGGAGGCGCTTCACTTA 60.389 55.000 21.86 0.00 0.00 2.24
2745 4097 0.319083 TTCGGAGGCGCTTCACTTAA 59.681 50.000 21.86 6.43 0.00 1.85
2746 4098 0.319083 TCGGAGGCGCTTCACTTAAA 59.681 50.000 21.86 0.00 0.00 1.52
2747 4099 1.153353 CGGAGGCGCTTCACTTAAAA 58.847 50.000 21.86 0.00 0.00 1.52
2748 4100 1.533731 CGGAGGCGCTTCACTTAAAAA 59.466 47.619 21.86 0.00 0.00 1.94
2749 4101 2.161609 CGGAGGCGCTTCACTTAAAAAT 59.838 45.455 21.86 0.00 0.00 1.82
2750 4102 3.727970 CGGAGGCGCTTCACTTAAAAATC 60.728 47.826 21.86 0.00 0.00 2.17
2751 4103 3.190535 GGAGGCGCTTCACTTAAAAATCA 59.809 43.478 21.86 0.00 0.00 2.57
2752 4104 4.142381 GGAGGCGCTTCACTTAAAAATCAT 60.142 41.667 21.86 0.00 0.00 2.45
2753 4105 4.737054 AGGCGCTTCACTTAAAAATCATG 58.263 39.130 7.64 0.00 0.00 3.07
2754 4106 3.859386 GGCGCTTCACTTAAAAATCATGG 59.141 43.478 7.64 0.00 0.00 3.66
2755 4107 4.380444 GGCGCTTCACTTAAAAATCATGGA 60.380 41.667 7.64 0.00 0.00 3.41
2756 4108 4.795278 GCGCTTCACTTAAAAATCATGGAG 59.205 41.667 0.00 0.00 0.00 3.86
2757 4109 5.619981 GCGCTTCACTTAAAAATCATGGAGT 60.620 40.000 0.00 0.00 0.00 3.85
2758 4110 5.796935 CGCTTCACTTAAAAATCATGGAGTG 59.203 40.000 0.00 0.00 36.68 3.51
2759 4111 6.095377 GCTTCACTTAAAAATCATGGAGTGG 58.905 40.000 0.00 0.00 36.17 4.00
2760 4112 6.588719 TTCACTTAAAAATCATGGAGTGGG 57.411 37.500 0.00 0.00 36.17 4.61
2761 4113 4.462483 TCACTTAAAAATCATGGAGTGGGC 59.538 41.667 0.00 0.00 36.17 5.36
2762 4114 4.220382 CACTTAAAAATCATGGAGTGGGCA 59.780 41.667 0.00 0.00 32.88 5.36
2763 4115 4.837860 ACTTAAAAATCATGGAGTGGGCAA 59.162 37.500 0.00 0.00 0.00 4.52
2764 4116 5.306678 ACTTAAAAATCATGGAGTGGGCAAA 59.693 36.000 0.00 0.00 0.00 3.68
2765 4117 3.683365 AAAATCATGGAGTGGGCAAAC 57.317 42.857 0.00 0.00 0.00 2.93
2766 4118 2.307496 AATCATGGAGTGGGCAAACA 57.693 45.000 0.00 0.00 0.00 2.83
2767 4119 1.843368 ATCATGGAGTGGGCAAACAG 58.157 50.000 0.00 0.00 0.00 3.16
2768 4120 0.251297 TCATGGAGTGGGCAAACAGG 60.251 55.000 0.00 0.00 0.00 4.00
2769 4121 0.540365 CATGGAGTGGGCAAACAGGT 60.540 55.000 0.00 0.00 0.00 4.00
2770 4122 1.072266 ATGGAGTGGGCAAACAGGTA 58.928 50.000 0.00 0.00 0.00 3.08
2771 4123 0.109723 TGGAGTGGGCAAACAGGTAC 59.890 55.000 0.00 0.00 0.00 3.34
2772 4124 0.400594 GGAGTGGGCAAACAGGTACT 59.599 55.000 0.00 0.00 43.88 2.73
2773 4125 1.610886 GGAGTGGGCAAACAGGTACTC 60.611 57.143 0.00 0.00 34.60 2.59
2774 4126 0.400594 AGTGGGCAAACAGGTACTCC 59.599 55.000 0.00 0.00 34.60 3.85
2775 4127 0.953960 GTGGGCAAACAGGTACTCCG 60.954 60.000 0.00 0.00 34.60 4.63
2776 4128 2.038837 GGGCAAACAGGTACTCCGC 61.039 63.158 0.00 0.00 34.60 5.54
2777 4129 1.302192 GGCAAACAGGTACTCCGCA 60.302 57.895 0.00 0.00 34.60 5.69
2778 4130 1.298859 GGCAAACAGGTACTCCGCAG 61.299 60.000 0.00 0.00 34.60 5.18
2779 4131 0.320421 GCAAACAGGTACTCCGCAGA 60.320 55.000 0.00 0.00 34.60 4.26
2780 4132 1.676014 GCAAACAGGTACTCCGCAGAT 60.676 52.381 0.00 0.00 34.60 2.90
2781 4133 2.699954 CAAACAGGTACTCCGCAGATT 58.300 47.619 0.00 0.00 34.60 2.40
2782 4134 2.673368 CAAACAGGTACTCCGCAGATTC 59.327 50.000 0.00 0.00 34.60 2.52
2783 4135 1.853963 ACAGGTACTCCGCAGATTCT 58.146 50.000 0.00 0.00 34.60 2.40
2784 4136 2.180276 ACAGGTACTCCGCAGATTCTT 58.820 47.619 0.00 0.00 34.60 2.52
2785 4137 2.093973 ACAGGTACTCCGCAGATTCTTG 60.094 50.000 0.00 0.00 34.60 3.02
2786 4138 2.093973 CAGGTACTCCGCAGATTCTTGT 60.094 50.000 0.00 0.00 34.60 3.16
2787 4139 3.130516 CAGGTACTCCGCAGATTCTTGTA 59.869 47.826 0.00 0.00 34.60 2.41
2788 4140 3.961408 AGGTACTCCGCAGATTCTTGTAT 59.039 43.478 0.00 0.00 39.05 2.29
2789 4141 4.406003 AGGTACTCCGCAGATTCTTGTATT 59.594 41.667 0.00 0.00 39.05 1.89
2790 4142 4.745620 GGTACTCCGCAGATTCTTGTATTC 59.254 45.833 0.00 0.00 0.00 1.75
2791 4143 4.744795 ACTCCGCAGATTCTTGTATTCT 57.255 40.909 0.00 0.00 0.00 2.40
2792 4144 5.854010 ACTCCGCAGATTCTTGTATTCTA 57.146 39.130 0.00 0.00 0.00 2.10
2793 4145 5.593010 ACTCCGCAGATTCTTGTATTCTAC 58.407 41.667 0.00 0.00 0.00 2.59
2794 4146 4.607955 TCCGCAGATTCTTGTATTCTACG 58.392 43.478 0.00 0.00 0.00 3.51
2795 4147 3.736252 CCGCAGATTCTTGTATTCTACGG 59.264 47.826 0.00 0.00 37.86 4.02
2796 4148 4.499188 CCGCAGATTCTTGTATTCTACGGA 60.499 45.833 5.13 0.00 43.00 4.69
2797 4149 4.677378 CGCAGATTCTTGTATTCTACGGAG 59.323 45.833 0.00 0.00 0.00 4.63
2798 4150 4.446051 GCAGATTCTTGTATTCTACGGAGC 59.554 45.833 0.00 0.00 0.00 4.70
2799 4151 5.737635 GCAGATTCTTGTATTCTACGGAGCT 60.738 44.000 0.00 0.00 0.00 4.09
2800 4152 5.689514 CAGATTCTTGTATTCTACGGAGCTG 59.310 44.000 0.00 0.00 0.00 4.24
2801 4153 4.386867 TTCTTGTATTCTACGGAGCTGG 57.613 45.455 0.00 0.00 0.00 4.85
2802 4154 3.362706 TCTTGTATTCTACGGAGCTGGT 58.637 45.455 0.00 0.00 0.00 4.00
2803 4155 3.130516 TCTTGTATTCTACGGAGCTGGTG 59.869 47.826 0.00 0.00 0.00 4.17
2804 4156 2.730382 TGTATTCTACGGAGCTGGTGA 58.270 47.619 0.00 0.00 0.00 4.02
2805 4157 3.093814 TGTATTCTACGGAGCTGGTGAA 58.906 45.455 0.00 0.00 0.00 3.18
2806 4158 2.969628 ATTCTACGGAGCTGGTGAAG 57.030 50.000 0.00 0.00 0.00 3.02
2807 4159 1.629043 TTCTACGGAGCTGGTGAAGT 58.371 50.000 0.00 0.00 0.00 3.01
2808 4160 0.888619 TCTACGGAGCTGGTGAAGTG 59.111 55.000 0.00 0.00 0.00 3.16
2809 4161 0.737715 CTACGGAGCTGGTGAAGTGC 60.738 60.000 0.00 0.00 0.00 4.40
2810 4162 2.167398 TACGGAGCTGGTGAAGTGCC 62.167 60.000 0.00 0.00 0.00 5.01
2811 4163 2.743928 GGAGCTGGTGAAGTGCCG 60.744 66.667 0.00 0.00 0.00 5.69
2812 4164 2.343758 GAGCTGGTGAAGTGCCGA 59.656 61.111 0.00 0.00 0.00 5.54
2813 4165 1.301716 GAGCTGGTGAAGTGCCGAA 60.302 57.895 0.00 0.00 0.00 4.30
2814 4166 1.569479 GAGCTGGTGAAGTGCCGAAC 61.569 60.000 0.00 0.00 0.00 3.95
2815 4167 1.891919 GCTGGTGAAGTGCCGAACA 60.892 57.895 0.00 0.00 0.00 3.18
2816 4168 1.845809 GCTGGTGAAGTGCCGAACAG 61.846 60.000 0.00 0.00 0.00 3.16
2817 4169 1.227823 TGGTGAAGTGCCGAACAGG 60.228 57.895 0.00 0.00 44.97 4.00
2818 4170 1.966451 GGTGAAGTGCCGAACAGGG 60.966 63.158 0.00 0.00 41.48 4.45
2827 4179 3.644861 CCGAACAGGGCCTAAAAGT 57.355 52.632 5.28 0.00 35.97 2.66
2828 4180 1.165270 CCGAACAGGGCCTAAAAGTG 58.835 55.000 5.28 0.00 35.97 3.16
2829 4181 1.544759 CCGAACAGGGCCTAAAAGTGT 60.545 52.381 5.28 0.00 35.97 3.55
2830 4182 1.535462 CGAACAGGGCCTAAAAGTGTG 59.465 52.381 5.28 0.00 0.00 3.82
2831 4183 1.269723 GAACAGGGCCTAAAAGTGTGC 59.730 52.381 5.28 0.00 0.00 4.57
2832 4184 0.889186 ACAGGGCCTAAAAGTGTGCG 60.889 55.000 5.28 0.00 0.00 5.34
2833 4185 0.889186 CAGGGCCTAAAAGTGTGCGT 60.889 55.000 5.28 0.00 0.00 5.24
2834 4186 0.605589 AGGGCCTAAAAGTGTGCGTC 60.606 55.000 2.82 0.00 0.00 5.19
2835 4187 0.887387 GGGCCTAAAAGTGTGCGTCA 60.887 55.000 0.84 0.00 0.00 4.35
2836 4188 0.948678 GGCCTAAAAGTGTGCGTCAA 59.051 50.000 0.00 0.00 0.00 3.18
2837 4189 1.539827 GGCCTAAAAGTGTGCGTCAAT 59.460 47.619 0.00 0.00 0.00 2.57
2838 4190 2.030274 GGCCTAAAAGTGTGCGTCAATT 60.030 45.455 0.00 0.00 35.81 2.32
2839 4191 3.189702 GGCCTAAAAGTGTGCGTCAATTA 59.810 43.478 0.00 0.00 33.04 1.40
2840 4192 4.320641 GGCCTAAAAGTGTGCGTCAATTAA 60.321 41.667 0.00 0.00 33.04 1.40
2841 4193 5.399013 GCCTAAAAGTGTGCGTCAATTAAT 58.601 37.500 0.00 0.00 33.04 1.40
2842 4194 6.403855 GGCCTAAAAGTGTGCGTCAATTAATA 60.404 38.462 0.00 0.00 33.04 0.98
2843 4195 7.193595 GCCTAAAAGTGTGCGTCAATTAATAT 58.806 34.615 0.00 0.00 33.04 1.28
2844 4196 7.165812 GCCTAAAAGTGTGCGTCAATTAATATG 59.834 37.037 0.00 0.00 33.04 1.78
2845 4197 7.643764 CCTAAAAGTGTGCGTCAATTAATATGG 59.356 37.037 0.00 0.00 33.04 2.74
2846 4198 5.499139 AAGTGTGCGTCAATTAATATGGG 57.501 39.130 0.00 0.00 32.40 4.00
2847 4199 4.523083 AGTGTGCGTCAATTAATATGGGT 58.477 39.130 0.00 0.00 0.00 4.51
2848 4200 4.947388 AGTGTGCGTCAATTAATATGGGTT 59.053 37.500 0.00 0.00 0.00 4.11
2849 4201 5.034152 GTGTGCGTCAATTAATATGGGTTG 58.966 41.667 0.00 0.00 0.00 3.77
2850 4202 4.097135 TGTGCGTCAATTAATATGGGTTGG 59.903 41.667 0.00 0.00 0.00 3.77
2851 4203 4.336993 GTGCGTCAATTAATATGGGTTGGA 59.663 41.667 0.00 0.00 0.00 3.53
2852 4204 4.578516 TGCGTCAATTAATATGGGTTGGAG 59.421 41.667 0.00 0.00 0.00 3.86
2853 4205 4.023193 GCGTCAATTAATATGGGTTGGAGG 60.023 45.833 0.00 0.00 0.00 4.30
2854 4206 4.518970 CGTCAATTAATATGGGTTGGAGGG 59.481 45.833 0.00 0.00 0.00 4.30
2855 4207 5.689031 CGTCAATTAATATGGGTTGGAGGGA 60.689 44.000 0.00 0.00 0.00 4.20
2856 4208 5.770162 GTCAATTAATATGGGTTGGAGGGAG 59.230 44.000 0.00 0.00 0.00 4.30
2893 4245 5.868043 CACTGACAAGTGCATTCTAATGA 57.132 39.130 6.87 0.00 46.98 2.57
2894 4246 6.432607 CACTGACAAGTGCATTCTAATGAT 57.567 37.500 6.87 0.00 46.98 2.45
2998 4401 5.991328 ATTGAACCATCATAAGTACAGCG 57.009 39.130 0.00 0.00 34.96 5.18
3040 4449 3.609853 AGACAGTGCTTTCTCACACAAA 58.390 40.909 0.00 0.00 39.30 2.83
3042 4451 4.641989 AGACAGTGCTTTCTCACACAAAAT 59.358 37.500 0.00 0.00 39.30 1.82
3044 4453 6.017605 AGACAGTGCTTTCTCACACAAAATAG 60.018 38.462 0.00 0.00 39.30 1.73
3045 4454 5.822519 ACAGTGCTTTCTCACACAAAATAGA 59.177 36.000 0.00 0.00 39.30 1.98
3047 4456 5.471456 AGTGCTTTCTCACACAAAATAGAGG 59.529 40.000 0.00 0.00 39.30 3.69
3060 4469 1.356124 ATAGAGGCCCCAGCTACATG 58.644 55.000 0.00 0.00 39.73 3.21
3112 4521 3.571401 AGAATGGGTTGCTGTTCTTCTTG 59.429 43.478 0.00 0.00 0.00 3.02
3175 4584 3.181399 TCTCCTGGACTTTCTTCCCCTTA 60.181 47.826 0.00 0.00 34.33 2.69
3214 4623 2.076863 GGGTTGAAGTTGTCCTCATCG 58.923 52.381 0.00 0.00 0.00 3.84
3304 4713 0.955919 CGTGCCCCTTGAACTCCTTC 60.956 60.000 0.00 0.00 0.00 3.46
3365 4774 1.036707 TGCCCTGCAAAAACCAGTAC 58.963 50.000 0.00 0.00 34.76 2.73
3369 4778 0.385473 CTGCAAAAACCAGTACCGCG 60.385 55.000 0.00 0.00 0.00 6.46
3378 4787 1.135721 ACCAGTACCGCGGATAAGAAC 59.864 52.381 35.90 18.25 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.667420 CGTCCAAACGTAGGCAGT 57.333 55.556 2.20 0.00 43.94 4.40
57 58 3.810941 TGAGCGTAAACCTTCGAAATGTT 59.189 39.130 0.00 3.04 0.00 2.71
63 64 3.096541 CGTGAGCGTAAACCTTCGA 57.903 52.632 0.00 0.00 0.00 3.71
86 87 2.428890 ACAGCGGTTTTGGTGAAAATCA 59.571 40.909 0.00 0.00 39.68 2.57
93 94 2.577449 AAGAAACAGCGGTTTTGGTG 57.423 45.000 16.15 0.00 46.84 4.17
101 102 4.552166 TTTCTCTCAAAAGAAACAGCGG 57.448 40.909 0.00 0.00 39.67 5.52
102 103 6.201517 TGAATTTCTCTCAAAAGAAACAGCG 58.798 36.000 1.47 0.00 45.38 5.18
115 185 9.727627 CCAATGTTAGCTAAATGAATTTCTCTC 57.272 33.333 7.99 0.00 0.00 3.20
116 186 9.466497 TCCAATGTTAGCTAAATGAATTTCTCT 57.534 29.630 7.99 0.00 0.00 3.10
122 192 6.038271 GGTCGTCCAATGTTAGCTAAATGAAT 59.962 38.462 7.99 0.00 0.00 2.57
134 204 1.671054 CAGCGGGTCGTCCAATGTT 60.671 57.895 0.04 0.00 34.36 2.71
135 205 2.047274 CAGCGGGTCGTCCAATGT 60.047 61.111 0.04 0.00 34.36 2.71
136 206 3.499737 GCAGCGGGTCGTCCAATG 61.500 66.667 0.04 0.00 34.36 2.82
137 207 3.706373 AGCAGCGGGTCGTCCAAT 61.706 61.111 0.04 0.00 34.36 3.16
138 208 4.680237 CAGCAGCGGGTCGTCCAA 62.680 66.667 0.04 0.00 34.36 3.53
143 213 3.430565 TAGATGCAGCAGCGGGTCG 62.431 63.158 4.07 0.00 46.23 4.79
144 214 1.593750 CTAGATGCAGCAGCGGGTC 60.594 63.158 4.07 0.00 46.23 4.46
145 215 2.503061 CTAGATGCAGCAGCGGGT 59.497 61.111 4.07 0.00 46.23 5.28
146 216 2.971413 GCTAGATGCAGCAGCGGG 60.971 66.667 4.07 3.28 46.23 6.13
147 217 2.971413 GGCTAGATGCAGCAGCGG 60.971 66.667 16.40 3.66 46.23 5.52
148 218 3.336318 CGGCTAGATGCAGCAGCG 61.336 66.667 16.40 10.30 46.23 5.18
172 242 1.418755 GGTACGAGCGCTTTTTCCG 59.581 57.895 13.26 13.21 0.00 4.30
208 280 2.347490 GCCGGCAGGAGACAAGAA 59.653 61.111 24.80 0.00 41.02 2.52
231 304 0.896940 AGAGACGAGGTAAACCGGCA 60.897 55.000 0.00 0.00 42.08 5.69
234 307 2.030540 TCACAAGAGACGAGGTAAACCG 60.031 50.000 0.00 0.00 42.08 4.44
237 310 5.723672 AAGATCACAAGAGACGAGGTAAA 57.276 39.130 0.00 0.00 0.00 2.01
238 311 5.357314 CCTAAGATCACAAGAGACGAGGTAA 59.643 44.000 0.00 0.00 0.00 2.85
278 358 3.708220 GAAGCTCTCCCGTCGGCAG 62.708 68.421 5.50 0.00 0.00 4.85
291 384 3.715628 AAAGCATCACAAAACGAAGCT 57.284 38.095 0.00 0.00 38.98 3.74
509 625 3.057876 ACACACAAACACACACGAACAAT 60.058 39.130 0.00 0.00 0.00 2.71
588 707 2.579201 CTACAGGACCAGCCACCG 59.421 66.667 0.00 0.00 40.02 4.94
602 722 0.525029 GTCGTCGTGCTAAGCCCTAC 60.525 60.000 0.00 0.00 0.00 3.18
607 728 1.077089 GGGAAGTCGTCGTGCTAAGC 61.077 60.000 0.00 0.00 0.00 3.09
662 785 4.148825 CACTTCGCCCCTCCCTCG 62.149 72.222 0.00 0.00 0.00 4.63
707 846 4.224594 AGATCCGTAGACCACCTATCGATA 59.775 45.833 4.78 4.78 0.00 2.92
712 851 2.445905 TCCAGATCCGTAGACCACCTAT 59.554 50.000 0.00 0.00 0.00 2.57
833 975 3.057315 CCATGAGTCGTCCAATGCTTTTT 60.057 43.478 0.00 0.00 0.00 1.94
834 976 2.489329 CCATGAGTCGTCCAATGCTTTT 59.511 45.455 0.00 0.00 0.00 2.27
835 977 2.086869 CCATGAGTCGTCCAATGCTTT 58.913 47.619 0.00 0.00 0.00 3.51
836 978 1.278985 TCCATGAGTCGTCCAATGCTT 59.721 47.619 0.00 0.00 0.00 3.91
837 979 0.904649 TCCATGAGTCGTCCAATGCT 59.095 50.000 0.00 0.00 0.00 3.79
838 980 1.009829 GTCCATGAGTCGTCCAATGC 58.990 55.000 0.00 0.00 0.00 3.56
839 981 2.274437 CTGTCCATGAGTCGTCCAATG 58.726 52.381 0.00 0.00 0.00 2.82
840 982 1.208052 CCTGTCCATGAGTCGTCCAAT 59.792 52.381 0.00 0.00 0.00 3.16
841 983 0.608130 CCTGTCCATGAGTCGTCCAA 59.392 55.000 0.00 0.00 0.00 3.53
842 984 1.257750 CCCTGTCCATGAGTCGTCCA 61.258 60.000 0.00 0.00 0.00 4.02
843 985 0.970937 TCCCTGTCCATGAGTCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
846 988 2.472695 TTTTCCCTGTCCATGAGTCG 57.527 50.000 0.00 0.00 0.00 4.18
873 1052 0.458669 CTTTTGCCTAGCCCATGCAG 59.541 55.000 0.00 0.00 41.13 4.41
892 1071 4.182433 GCTAGCCCTCCCCAGCAC 62.182 72.222 2.29 0.00 34.13 4.40
918 1100 2.159296 GGCGATGGTATGTTTGGGTTTC 60.159 50.000 0.00 0.00 0.00 2.78
952 1138 1.834822 CTAGCCGGGGGAAGAGAGG 60.835 68.421 2.18 0.00 0.00 3.69
963 1149 4.120589 GGAGAAAAAGATGTACTAGCCGG 58.879 47.826 0.00 0.00 0.00 6.13
966 1152 6.874134 TGACTTGGAGAAAAAGATGTACTAGC 59.126 38.462 0.00 0.00 0.00 3.42
967 1153 8.833231 TTGACTTGGAGAAAAAGATGTACTAG 57.167 34.615 0.00 0.00 0.00 2.57
992 1180 1.304547 CACGGACCTCCTCCTGACT 60.305 63.158 0.00 0.00 36.80 3.41
993 1181 3.007973 GCACGGACCTCCTCCTGAC 62.008 68.421 0.00 0.00 36.80 3.51
994 1182 2.680352 GCACGGACCTCCTCCTGA 60.680 66.667 0.00 0.00 36.80 3.86
995 1183 4.135153 CGCACGGACCTCCTCCTG 62.135 72.222 0.00 0.00 36.80 3.86
1107 1295 4.840005 GGGAAGCGGGAAGGAGCG 62.840 72.222 0.00 0.00 38.61 5.03
1113 1301 0.914417 AGAATGAGGGGAAGCGGGAA 60.914 55.000 0.00 0.00 0.00 3.97
1120 1308 0.327576 GGGGGAGAGAATGAGGGGAA 60.328 60.000 0.00 0.00 0.00 3.97
1121 1309 1.318380 GGGGGAGAGAATGAGGGGA 59.682 63.158 0.00 0.00 0.00 4.81
1174 1366 0.197661 TTCTAGGGGGTTCAGGGGTT 59.802 55.000 0.00 0.00 0.00 4.11
1175 1367 0.549413 GTTCTAGGGGGTTCAGGGGT 60.549 60.000 0.00 0.00 0.00 4.95
1178 1371 0.253327 GCTGTTCTAGGGGGTTCAGG 59.747 60.000 0.00 0.00 0.00 3.86
1206 1400 4.796110 TGGGAGGAAAGGATTAGGATTG 57.204 45.455 0.00 0.00 0.00 2.67
1230 2336 2.032528 CTGGAGCCAACCTGCGAA 59.967 61.111 0.00 0.00 34.08 4.70
1302 2411 1.909700 AAATCGCAACAGATGGGTGT 58.090 45.000 0.00 0.00 42.35 4.16
1305 2418 3.855689 AAGAAAATCGCAACAGATGGG 57.144 42.857 0.00 0.00 43.06 4.00
1316 2429 9.622004 TCTACTGTAGTAGTCAAAAGAAAATCG 57.378 33.333 16.33 0.00 46.08 3.34
1334 2447 1.113517 GCAGGGGCGGATCTACTGTA 61.114 60.000 0.00 0.00 0.00 2.74
1335 2448 2.435693 GCAGGGGCGGATCTACTGT 61.436 63.158 0.00 0.00 0.00 3.55
1336 2449 2.423446 GCAGGGGCGGATCTACTG 59.577 66.667 0.00 0.00 0.00 2.74
1337 2450 2.844839 GGCAGGGGCGGATCTACT 60.845 66.667 0.00 0.00 42.47 2.57
1338 2451 3.942439 GGGCAGGGGCGGATCTAC 61.942 72.222 0.00 0.00 42.47 2.59
1363 2476 0.250727 ATGGGTCGAACAGGTTGTGG 60.251 55.000 1.31 0.00 0.00 4.17
1446 2607 3.760035 AGTAGGACAGCGGGCACG 61.760 66.667 2.50 2.50 44.63 5.34
1473 2634 2.086869 AGATGCACTGAATTTGTCGGG 58.913 47.619 0.00 0.00 36.88 5.14
1476 2637 5.766222 ACTCAAAGATGCACTGAATTTGTC 58.234 37.500 0.00 0.00 33.61 3.18
1544 2705 2.768698 TCCTTCAATAACCGCGAACAA 58.231 42.857 8.23 0.00 0.00 2.83
1545 2706 2.459060 TCCTTCAATAACCGCGAACA 57.541 45.000 8.23 0.00 0.00 3.18
1550 2711 0.730840 CGGGTTCCTTCAATAACCGC 59.269 55.000 0.00 0.00 45.08 5.68
1567 2728 2.698797 TGCTAATCTAGGAGAAACCCGG 59.301 50.000 0.00 0.00 40.05 5.73
1569 2730 3.734463 GCTGCTAATCTAGGAGAAACCC 58.266 50.000 6.41 0.00 45.91 4.11
1579 2740 0.824109 AGTGTGGCGCTGCTAATCTA 59.176 50.000 7.64 0.00 0.00 1.98
1590 2752 1.021202 TTCCAAGAAACAGTGTGGCG 58.979 50.000 0.00 0.00 0.00 5.69
1606 2773 6.435428 TCGTGAACTGCTTAATTTTCTTTCC 58.565 36.000 0.00 0.00 0.00 3.13
1618 2785 2.549754 CTCCAACAATCGTGAACTGCTT 59.450 45.455 0.00 0.00 0.00 3.91
1619 2786 2.146342 CTCCAACAATCGTGAACTGCT 58.854 47.619 0.00 0.00 0.00 4.24
1630 2797 2.887152 GCAACAGAGTTCCTCCAACAAT 59.113 45.455 0.00 0.00 37.48 2.71
1730 3029 2.031807 CAGGAGCAATGCGAGAGAAATG 59.968 50.000 0.00 0.00 0.00 2.32
1731 3030 2.286872 CAGGAGCAATGCGAGAGAAAT 58.713 47.619 0.00 0.00 0.00 2.17
1733 3032 0.610174 ACAGGAGCAATGCGAGAGAA 59.390 50.000 0.00 0.00 0.00 2.87
1736 3035 0.461548 CCTACAGGAGCAATGCGAGA 59.538 55.000 0.00 0.00 37.39 4.04
1741 3063 2.756760 ACAAATGCCTACAGGAGCAATG 59.243 45.455 0.00 0.00 43.36 2.82
1940 3273 1.159285 CGATCTGCTTGTTCAAGGCA 58.841 50.000 13.35 10.59 34.66 4.75
2056 3390 5.680594 ATGGATGGCTTAATGCTTTGAAA 57.319 34.783 0.00 0.00 42.39 2.69
2082 3416 2.094894 CGAGTAGCGTTAGAAGAACGGA 59.905 50.000 11.37 0.00 43.25 4.69
2102 3437 1.699656 CCTTCTGCAATCGAGCCACG 61.700 60.000 0.00 0.00 44.09 4.94
2129 3464 0.465460 TGGTCTTGGCAGCGTTCTTT 60.465 50.000 0.00 0.00 0.00 2.52
2138 3473 3.448093 TGGTAATTGATGGTCTTGGCA 57.552 42.857 0.00 0.00 0.00 4.92
2220 3559 0.033796 ACCCAGACATCAGGGCAATG 60.034 55.000 9.20 0.00 45.71 2.82
2281 3620 8.099364 TCAAACTTCACCAATGTCTAAAGATC 57.901 34.615 0.00 0.00 0.00 2.75
2293 3632 5.982516 CCAAAATCGATTCAAACTTCACCAA 59.017 36.000 11.83 0.00 0.00 3.67
2298 3637 7.083858 TCACATCCAAAATCGATTCAAACTTC 58.916 34.615 11.83 0.00 0.00 3.01
2310 3649 6.623767 GCCTTACAAGTCTCACATCCAAAATC 60.624 42.308 0.00 0.00 0.00 2.17
2322 3661 2.675348 GTGCTGATGCCTTACAAGTCTC 59.325 50.000 0.00 0.00 38.71 3.36
2360 3699 8.098912 TGCAGTGCATATTATATCATGAGAAGT 58.901 33.333 15.37 0.00 31.71 3.01
2392 3731 8.186821 CACTCTCATCTCAAAAACAAGAAAAGT 58.813 33.333 0.00 0.00 0.00 2.66
2393 3732 8.186821 ACACTCTCATCTCAAAAACAAGAAAAG 58.813 33.333 0.00 0.00 0.00 2.27
2396 3735 8.777413 CATACACTCTCATCTCAAAAACAAGAA 58.223 33.333 0.00 0.00 0.00 2.52
2398 3737 8.092521 ACATACACTCTCATCTCAAAAACAAG 57.907 34.615 0.00 0.00 0.00 3.16
2428 3769 9.685276 TCAAGGTATGTAATCAATCAATCAGTT 57.315 29.630 0.00 0.00 0.00 3.16
2431 3772 9.112725 CAGTCAAGGTATGTAATCAATCAATCA 57.887 33.333 0.00 0.00 0.00 2.57
2449 3790 3.963374 TGATCCTGATACTCCAGTCAAGG 59.037 47.826 0.00 0.00 32.43 3.61
2481 3822 2.224042 TGACACTTGAGCACCTGTGTAG 60.224 50.000 8.65 0.00 42.72 2.74
2485 3826 2.613977 GCTATGACACTTGAGCACCTGT 60.614 50.000 0.00 0.00 34.96 4.00
2590 3933 4.743045 AGCAAATCAGCAAGCTCGATAGAT 60.743 41.667 0.00 0.00 40.42 1.98
2591 3934 3.431346 AGCAAATCAGCAAGCTCGATAGA 60.431 43.478 0.00 0.00 39.28 1.98
2592 3935 2.871022 AGCAAATCAGCAAGCTCGATAG 59.129 45.455 0.00 0.00 36.85 2.08
2593 3936 2.868583 GAGCAAATCAGCAAGCTCGATA 59.131 45.455 0.00 0.00 43.27 2.92
2594 3937 1.669779 GAGCAAATCAGCAAGCTCGAT 59.330 47.619 0.00 0.00 43.27 3.59
2595 3938 1.081892 GAGCAAATCAGCAAGCTCGA 58.918 50.000 0.00 0.00 43.27 4.04
2596 3939 3.600493 GAGCAAATCAGCAAGCTCG 57.400 52.632 0.00 0.00 43.27 5.03
2685 4037 5.010617 GCCAAAGGGAGTTTTCAGTGAAATA 59.989 40.000 18.69 7.60 35.59 1.40
2686 4038 4.202253 GCCAAAGGGAGTTTTCAGTGAAAT 60.202 41.667 18.69 5.28 35.59 2.17
2687 4039 3.132111 GCCAAAGGGAGTTTTCAGTGAAA 59.868 43.478 14.35 14.35 35.59 2.69
2688 4040 2.693074 GCCAAAGGGAGTTTTCAGTGAA 59.307 45.455 0.08 0.08 35.59 3.18
2689 4041 2.306847 GCCAAAGGGAGTTTTCAGTGA 58.693 47.619 0.00 0.00 35.59 3.41
2690 4042 1.341209 GGCCAAAGGGAGTTTTCAGTG 59.659 52.381 0.00 0.00 35.59 3.66
2691 4043 1.217942 AGGCCAAAGGGAGTTTTCAGT 59.782 47.619 5.01 0.00 35.59 3.41
2693 4045 1.063266 ACAGGCCAAAGGGAGTTTTCA 60.063 47.619 5.01 0.00 35.59 2.69
2694 4046 1.704641 ACAGGCCAAAGGGAGTTTTC 58.295 50.000 5.01 0.00 35.59 2.29
2695 4047 3.542969 ATACAGGCCAAAGGGAGTTTT 57.457 42.857 5.01 0.00 35.59 2.43
2696 4048 3.542969 AATACAGGCCAAAGGGAGTTT 57.457 42.857 5.01 0.00 35.59 2.66
2697 4049 4.668138 TTAATACAGGCCAAAGGGAGTT 57.332 40.909 5.01 0.00 35.59 3.01
2698 4050 4.600062 CTTTAATACAGGCCAAAGGGAGT 58.400 43.478 5.01 0.00 35.59 3.85
2702 4054 3.801114 GGCTTTAATACAGGCCAAAGG 57.199 47.619 5.01 0.00 43.59 3.11
2708 4060 2.354821 CGAACAGGGCTTTAATACAGGC 59.645 50.000 0.00 0.00 36.08 4.85
2709 4061 2.943033 CCGAACAGGGCTTTAATACAGG 59.057 50.000 0.00 0.00 35.97 4.00
2710 4062 3.869065 TCCGAACAGGGCTTTAATACAG 58.131 45.455 0.00 0.00 41.52 2.74
2711 4063 3.370103 CCTCCGAACAGGGCTTTAATACA 60.370 47.826 0.00 0.00 41.52 2.29
2712 4064 3.203716 CCTCCGAACAGGGCTTTAATAC 58.796 50.000 0.00 0.00 41.52 1.89
2713 4065 2.420967 GCCTCCGAACAGGGCTTTAATA 60.421 50.000 0.00 0.00 42.31 0.98
2714 4066 1.682087 GCCTCCGAACAGGGCTTTAAT 60.682 52.381 0.00 0.00 42.31 1.40
2715 4067 0.322187 GCCTCCGAACAGGGCTTTAA 60.322 55.000 0.00 0.00 42.31 1.52
2717 4069 2.034221 GCCTCCGAACAGGGCTTT 59.966 61.111 0.00 0.00 42.31 3.51
2718 4070 4.394712 CGCCTCCGAACAGGGCTT 62.395 66.667 0.00 0.00 43.29 4.35
2721 4073 4.394712 AAGCGCCTCCGAACAGGG 62.395 66.667 2.29 0.00 41.52 4.45
2722 4074 2.815647 GAAGCGCCTCCGAACAGG 60.816 66.667 2.29 0.00 42.97 4.00
2724 4076 2.357034 GTGAAGCGCCTCCGAACA 60.357 61.111 2.29 0.00 36.29 3.18
2725 4077 0.389426 TAAGTGAAGCGCCTCCGAAC 60.389 55.000 2.29 0.00 36.29 3.95
2726 4078 0.319083 TTAAGTGAAGCGCCTCCGAA 59.681 50.000 2.29 0.00 36.29 4.30
2727 4079 0.319083 TTTAAGTGAAGCGCCTCCGA 59.681 50.000 2.29 0.00 36.29 4.55
2728 4080 1.153353 TTTTAAGTGAAGCGCCTCCG 58.847 50.000 2.29 0.00 37.57 4.63
2729 4081 3.190535 TGATTTTTAAGTGAAGCGCCTCC 59.809 43.478 2.29 0.00 0.00 4.30
2730 4082 4.419522 TGATTTTTAAGTGAAGCGCCTC 57.580 40.909 2.29 0.00 0.00 4.70
2731 4083 4.380867 CCATGATTTTTAAGTGAAGCGCCT 60.381 41.667 2.29 0.00 0.00 5.52
2732 4084 3.859386 CCATGATTTTTAAGTGAAGCGCC 59.141 43.478 2.29 0.00 0.00 6.53
2733 4085 4.732784 TCCATGATTTTTAAGTGAAGCGC 58.267 39.130 0.00 0.00 0.00 5.92
2734 4086 5.796935 CACTCCATGATTTTTAAGTGAAGCG 59.203 40.000 0.00 0.00 36.99 4.68
2735 4087 6.095377 CCACTCCATGATTTTTAAGTGAAGC 58.905 40.000 0.00 0.00 36.99 3.86
2736 4088 6.624423 CCCACTCCATGATTTTTAAGTGAAG 58.376 40.000 0.00 0.00 36.99 3.02
2737 4089 5.047377 GCCCACTCCATGATTTTTAAGTGAA 60.047 40.000 0.00 0.00 36.99 3.18
2738 4090 4.462483 GCCCACTCCATGATTTTTAAGTGA 59.538 41.667 0.00 0.00 36.99 3.41
2739 4091 4.220382 TGCCCACTCCATGATTTTTAAGTG 59.780 41.667 0.00 0.00 35.13 3.16
2740 4092 4.415596 TGCCCACTCCATGATTTTTAAGT 58.584 39.130 0.00 0.00 0.00 2.24
2741 4093 5.404466 TTGCCCACTCCATGATTTTTAAG 57.596 39.130 0.00 0.00 0.00 1.85
2742 4094 5.070981 TGTTTGCCCACTCCATGATTTTTAA 59.929 36.000 0.00 0.00 0.00 1.52
2743 4095 4.590647 TGTTTGCCCACTCCATGATTTTTA 59.409 37.500 0.00 0.00 0.00 1.52
2744 4096 3.390639 TGTTTGCCCACTCCATGATTTTT 59.609 39.130 0.00 0.00 0.00 1.94
2745 4097 2.971330 TGTTTGCCCACTCCATGATTTT 59.029 40.909 0.00 0.00 0.00 1.82
2746 4098 2.564062 CTGTTTGCCCACTCCATGATTT 59.436 45.455 0.00 0.00 0.00 2.17
2747 4099 2.173519 CTGTTTGCCCACTCCATGATT 58.826 47.619 0.00 0.00 0.00 2.57
2748 4100 1.617804 CCTGTTTGCCCACTCCATGAT 60.618 52.381 0.00 0.00 0.00 2.45
2749 4101 0.251297 CCTGTTTGCCCACTCCATGA 60.251 55.000 0.00 0.00 0.00 3.07
2750 4102 0.540365 ACCTGTTTGCCCACTCCATG 60.540 55.000 0.00 0.00 0.00 3.66
2751 4103 1.072266 TACCTGTTTGCCCACTCCAT 58.928 50.000 0.00 0.00 0.00 3.41
2752 4104 0.109723 GTACCTGTTTGCCCACTCCA 59.890 55.000 0.00 0.00 0.00 3.86
2753 4105 0.400594 AGTACCTGTTTGCCCACTCC 59.599 55.000 0.00 0.00 0.00 3.85
2754 4106 1.610886 GGAGTACCTGTTTGCCCACTC 60.611 57.143 0.00 0.00 33.31 3.51
2755 4107 0.400594 GGAGTACCTGTTTGCCCACT 59.599 55.000 0.00 0.00 0.00 4.00
2756 4108 0.953960 CGGAGTACCTGTTTGCCCAC 60.954 60.000 0.00 0.00 0.00 4.61
2757 4109 1.373435 CGGAGTACCTGTTTGCCCA 59.627 57.895 0.00 0.00 0.00 5.36
2758 4110 2.038837 GCGGAGTACCTGTTTGCCC 61.039 63.158 0.00 0.00 0.00 5.36
2759 4111 1.298859 CTGCGGAGTACCTGTTTGCC 61.299 60.000 0.00 0.00 0.00 4.52
2760 4112 0.320421 TCTGCGGAGTACCTGTTTGC 60.320 55.000 3.10 0.00 0.00 3.68
2761 4113 2.386661 ATCTGCGGAGTACCTGTTTG 57.613 50.000 3.10 0.00 0.00 2.93
2762 4114 2.567615 AGAATCTGCGGAGTACCTGTTT 59.432 45.455 3.10 0.00 0.00 2.83
2763 4115 2.180276 AGAATCTGCGGAGTACCTGTT 58.820 47.619 3.10 0.00 0.00 3.16
2764 4116 1.853963 AGAATCTGCGGAGTACCTGT 58.146 50.000 3.10 0.00 0.00 4.00
2765 4117 2.093973 ACAAGAATCTGCGGAGTACCTG 60.094 50.000 3.10 0.00 0.00 4.00
2766 4118 2.180276 ACAAGAATCTGCGGAGTACCT 58.820 47.619 3.10 0.00 0.00 3.08
2767 4119 2.674796 ACAAGAATCTGCGGAGTACC 57.325 50.000 3.10 0.00 0.00 3.34
2768 4120 5.593010 AGAATACAAGAATCTGCGGAGTAC 58.407 41.667 3.10 0.00 0.00 2.73
2769 4121 5.854010 AGAATACAAGAATCTGCGGAGTA 57.146 39.130 3.10 0.00 0.00 2.59
2770 4122 4.744795 AGAATACAAGAATCTGCGGAGT 57.255 40.909 3.10 0.00 0.00 3.85
2771 4123 4.677378 CGTAGAATACAAGAATCTGCGGAG 59.323 45.833 0.00 0.00 43.24 4.63
2772 4124 4.607955 CGTAGAATACAAGAATCTGCGGA 58.392 43.478 0.00 0.00 43.24 5.54
2773 4125 4.956034 CGTAGAATACAAGAATCTGCGG 57.044 45.455 4.88 0.00 43.24 5.69
2774 4126 4.607955 TCCGTAGAATACAAGAATCTGCG 58.392 43.478 5.68 5.68 43.24 5.18
2775 4127 4.446051 GCTCCGTAGAATACAAGAATCTGC 59.554 45.833 0.00 0.00 43.24 4.26
2776 4128 5.689514 CAGCTCCGTAGAATACAAGAATCTG 59.310 44.000 0.00 0.00 43.24 2.90
2777 4129 5.221342 CCAGCTCCGTAGAATACAAGAATCT 60.221 44.000 0.00 0.00 43.24 2.40
2778 4130 4.985409 CCAGCTCCGTAGAATACAAGAATC 59.015 45.833 0.00 0.00 43.24 2.52
2779 4131 4.406003 ACCAGCTCCGTAGAATACAAGAAT 59.594 41.667 0.00 0.00 43.24 2.40
2780 4132 3.767673 ACCAGCTCCGTAGAATACAAGAA 59.232 43.478 0.00 0.00 43.24 2.52
2781 4133 3.130516 CACCAGCTCCGTAGAATACAAGA 59.869 47.826 0.00 0.00 43.24 3.02
2782 4134 3.130516 TCACCAGCTCCGTAGAATACAAG 59.869 47.826 0.00 0.00 43.24 3.16
2783 4135 3.093814 TCACCAGCTCCGTAGAATACAA 58.906 45.455 0.00 0.00 43.24 2.41
2784 4136 2.730382 TCACCAGCTCCGTAGAATACA 58.270 47.619 0.00 0.00 43.24 2.29
2785 4137 3.130693 ACTTCACCAGCTCCGTAGAATAC 59.869 47.826 0.00 0.00 38.50 1.89
2786 4138 3.130516 CACTTCACCAGCTCCGTAGAATA 59.869 47.826 0.00 0.00 0.00 1.75
2787 4139 2.093973 CACTTCACCAGCTCCGTAGAAT 60.094 50.000 0.00 0.00 0.00 2.40
2788 4140 1.272490 CACTTCACCAGCTCCGTAGAA 59.728 52.381 0.00 0.00 0.00 2.10
2789 4141 0.888619 CACTTCACCAGCTCCGTAGA 59.111 55.000 0.00 0.00 0.00 2.59
2790 4142 0.737715 GCACTTCACCAGCTCCGTAG 60.738 60.000 0.00 0.00 0.00 3.51
2791 4143 1.292223 GCACTTCACCAGCTCCGTA 59.708 57.895 0.00 0.00 0.00 4.02
2792 4144 2.031163 GCACTTCACCAGCTCCGT 59.969 61.111 0.00 0.00 0.00 4.69
2793 4145 2.743928 GGCACTTCACCAGCTCCG 60.744 66.667 0.00 0.00 0.00 4.63
2794 4146 2.731691 TTCGGCACTTCACCAGCTCC 62.732 60.000 0.00 0.00 0.00 4.70
2795 4147 1.301716 TTCGGCACTTCACCAGCTC 60.302 57.895 0.00 0.00 0.00 4.09
2796 4148 1.598130 GTTCGGCACTTCACCAGCT 60.598 57.895 0.00 0.00 0.00 4.24
2797 4149 1.845809 CTGTTCGGCACTTCACCAGC 61.846 60.000 0.00 0.00 0.00 4.85
2798 4150 1.230635 CCTGTTCGGCACTTCACCAG 61.231 60.000 0.00 0.00 0.00 4.00
2799 4151 1.227823 CCTGTTCGGCACTTCACCA 60.228 57.895 0.00 0.00 0.00 4.17
2800 4152 1.966451 CCCTGTTCGGCACTTCACC 60.966 63.158 0.00 0.00 0.00 4.02
2801 4153 3.655481 CCCTGTTCGGCACTTCAC 58.345 61.111 0.00 0.00 0.00 3.18
2809 4161 1.165270 CACTTTTAGGCCCTGTTCGG 58.835 55.000 0.00 0.00 0.00 4.30
2810 4162 1.535462 CACACTTTTAGGCCCTGTTCG 59.465 52.381 0.00 0.00 0.00 3.95
2811 4163 1.269723 GCACACTTTTAGGCCCTGTTC 59.730 52.381 0.00 0.00 0.00 3.18
2812 4164 1.328279 GCACACTTTTAGGCCCTGTT 58.672 50.000 0.00 0.00 0.00 3.16
2813 4165 0.889186 CGCACACTTTTAGGCCCTGT 60.889 55.000 0.00 0.00 0.00 4.00
2814 4166 0.889186 ACGCACACTTTTAGGCCCTG 60.889 55.000 0.00 0.00 0.00 4.45
2815 4167 0.605589 GACGCACACTTTTAGGCCCT 60.606 55.000 0.00 0.00 0.00 5.19
2816 4168 0.887387 TGACGCACACTTTTAGGCCC 60.887 55.000 0.00 0.00 0.00 5.80
2817 4169 0.948678 TTGACGCACACTTTTAGGCC 59.051 50.000 0.00 0.00 0.00 5.19
2818 4170 2.989422 ATTGACGCACACTTTTAGGC 57.011 45.000 0.00 0.00 0.00 3.93
2819 4171 7.643764 CCATATTAATTGACGCACACTTTTAGG 59.356 37.037 0.00 0.00 0.00 2.69
2820 4172 7.643764 CCCATATTAATTGACGCACACTTTTAG 59.356 37.037 0.00 0.00 0.00 1.85
2821 4173 7.121463 ACCCATATTAATTGACGCACACTTTTA 59.879 33.333 0.00 0.00 0.00 1.52
2822 4174 6.071616 ACCCATATTAATTGACGCACACTTTT 60.072 34.615 0.00 0.00 0.00 2.27
2823 4175 5.417580 ACCCATATTAATTGACGCACACTTT 59.582 36.000 0.00 0.00 0.00 2.66
2824 4176 4.947388 ACCCATATTAATTGACGCACACTT 59.053 37.500 0.00 0.00 0.00 3.16
2825 4177 4.523083 ACCCATATTAATTGACGCACACT 58.477 39.130 0.00 0.00 0.00 3.55
2826 4178 4.893424 ACCCATATTAATTGACGCACAC 57.107 40.909 0.00 0.00 0.00 3.82
2827 4179 4.097135 CCAACCCATATTAATTGACGCACA 59.903 41.667 0.00 0.00 0.00 4.57
2828 4180 4.336993 TCCAACCCATATTAATTGACGCAC 59.663 41.667 0.00 0.00 0.00 5.34
2829 4181 4.527944 TCCAACCCATATTAATTGACGCA 58.472 39.130 0.00 0.00 0.00 5.24
2830 4182 4.023193 CCTCCAACCCATATTAATTGACGC 60.023 45.833 0.00 0.00 0.00 5.19
2831 4183 4.518970 CCCTCCAACCCATATTAATTGACG 59.481 45.833 0.00 0.00 0.00 4.35
2832 4184 5.701224 TCCCTCCAACCCATATTAATTGAC 58.299 41.667 0.00 0.00 0.00 3.18
2833 4185 5.435041 ACTCCCTCCAACCCATATTAATTGA 59.565 40.000 0.00 0.00 0.00 2.57
2834 4186 5.705400 ACTCCCTCCAACCCATATTAATTG 58.295 41.667 0.00 0.00 0.00 2.32
2835 4187 6.624021 ACTACTCCCTCCAACCCATATTAATT 59.376 38.462 0.00 0.00 0.00 1.40
2836 4188 6.158260 ACTACTCCCTCCAACCCATATTAAT 58.842 40.000 0.00 0.00 0.00 1.40
2837 4189 5.544682 ACTACTCCCTCCAACCCATATTAA 58.455 41.667 0.00 0.00 0.00 1.40
2838 4190 5.166013 ACTACTCCCTCCAACCCATATTA 57.834 43.478 0.00 0.00 0.00 0.98
2839 4191 4.022359 ACTACTCCCTCCAACCCATATT 57.978 45.455 0.00 0.00 0.00 1.28
2840 4192 3.726837 ACTACTCCCTCCAACCCATAT 57.273 47.619 0.00 0.00 0.00 1.78
2841 4193 3.381335 GAACTACTCCCTCCAACCCATA 58.619 50.000 0.00 0.00 0.00 2.74
2842 4194 2.197465 GAACTACTCCCTCCAACCCAT 58.803 52.381 0.00 0.00 0.00 4.00
2843 4195 1.652947 GAACTACTCCCTCCAACCCA 58.347 55.000 0.00 0.00 0.00 4.51
2844 4196 0.535797 CGAACTACTCCCTCCAACCC 59.464 60.000 0.00 0.00 0.00 4.11
2845 4197 1.067071 CACGAACTACTCCCTCCAACC 60.067 57.143 0.00 0.00 0.00 3.77
2846 4198 1.672145 GCACGAACTACTCCCTCCAAC 60.672 57.143 0.00 0.00 0.00 3.77
2847 4199 0.606604 GCACGAACTACTCCCTCCAA 59.393 55.000 0.00 0.00 0.00 3.53
2848 4200 0.251653 AGCACGAACTACTCCCTCCA 60.252 55.000 0.00 0.00 0.00 3.86
2849 4201 0.456628 GAGCACGAACTACTCCCTCC 59.543 60.000 0.00 0.00 0.00 4.30
2850 4202 1.174783 TGAGCACGAACTACTCCCTC 58.825 55.000 0.00 0.00 0.00 4.30
2851 4203 1.272769 GTTGAGCACGAACTACTCCCT 59.727 52.381 0.00 0.00 0.00 4.20
2852 4204 1.000506 TGTTGAGCACGAACTACTCCC 59.999 52.381 0.00 0.00 0.00 4.30
2853 4205 2.059541 GTGTTGAGCACGAACTACTCC 58.940 52.381 0.00 0.00 38.45 3.85
2876 4228 5.359009 CCTTGGATCATTAGAATGCACTTGT 59.641 40.000 0.00 0.00 36.36 3.16
2877 4229 5.359009 ACCTTGGATCATTAGAATGCACTTG 59.641 40.000 0.00 0.00 36.36 3.16
2879 4231 4.885907 CACCTTGGATCATTAGAATGCACT 59.114 41.667 0.00 0.00 36.36 4.40
2882 4234 3.887716 AGCACCTTGGATCATTAGAATGC 59.112 43.478 0.00 2.75 36.36 3.56
2883 4235 5.128205 TGAGCACCTTGGATCATTAGAATG 58.872 41.667 0.00 0.00 37.75 2.67
2884 4236 5.378230 TGAGCACCTTGGATCATTAGAAT 57.622 39.130 0.00 0.00 0.00 2.40
2886 4238 4.409901 TGATGAGCACCTTGGATCATTAGA 59.590 41.667 0.00 0.00 43.40 2.10
2887 4239 4.711399 TGATGAGCACCTTGGATCATTAG 58.289 43.478 0.00 0.00 43.40 1.73
2889 4241 3.657398 TGATGAGCACCTTGGATCATT 57.343 42.857 0.00 0.00 43.40 2.57
2890 4242 3.657398 TTGATGAGCACCTTGGATCAT 57.343 42.857 0.00 0.00 45.80 2.45
2891 4243 3.657398 ATTGATGAGCACCTTGGATCA 57.343 42.857 0.00 0.00 37.63 2.92
2893 4245 4.508551 TGTATTGATGAGCACCTTGGAT 57.491 40.909 0.00 0.00 0.00 3.41
2894 4246 3.998913 TGTATTGATGAGCACCTTGGA 57.001 42.857 0.00 0.00 0.00 3.53
2932 4328 7.384439 TGTTCTGTGTTGTGTTTTAAGATGA 57.616 32.000 0.00 0.00 0.00 2.92
2996 4399 5.845985 TGTATCTTCTTGCTAATATGCGC 57.154 39.130 0.00 0.00 35.36 6.09
2998 4401 8.370493 TGTCTTGTATCTTCTTGCTAATATGC 57.630 34.615 0.00 0.00 0.00 3.14
3040 4449 1.701847 CATGTAGCTGGGGCCTCTATT 59.298 52.381 3.07 0.00 39.73 1.73
3042 4451 1.410850 GCATGTAGCTGGGGCCTCTA 61.411 60.000 3.07 0.00 41.15 2.43
3044 4453 2.203266 GCATGTAGCTGGGGCCTC 60.203 66.667 0.84 0.00 41.15 4.70
3045 4454 3.016971 TGCATGTAGCTGGGGCCT 61.017 61.111 0.84 0.00 45.94 5.19
3047 4456 1.821332 GAGTGCATGTAGCTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
3060 4469 1.396301 GCTACAACTGATGCAGAGTGC 59.604 52.381 0.82 0.00 45.29 4.40
3112 4521 4.843728 TCACCAACCCTTTCTATGATGAC 58.156 43.478 0.00 0.00 0.00 3.06
3175 4584 1.633915 CCAGGGCCTTCTCAGATGCT 61.634 60.000 1.32 0.00 0.00 3.79
3325 4734 1.668151 GTGTGAGCAGAACGGGGAC 60.668 63.158 0.00 0.00 0.00 4.46
3337 4746 1.180456 TTTGCAGGGCATGGTGTGAG 61.180 55.000 0.00 0.00 38.76 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.