Multiple sequence alignment - TraesCS5D01G365900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G365900 chr5D 100.000 2599 0 0 1 2599 442963764 442966362 0.000000e+00 4800.0
1 TraesCS5D01G365900 chr5D 97.229 1949 49 3 654 2599 435192753 435194699 0.000000e+00 3295.0
2 TraesCS5D01G365900 chr5D 96.197 1946 38 4 657 2599 45353780 45351868 0.000000e+00 3151.0
3 TraesCS5D01G365900 chr5D 83.700 227 27 7 101 318 29150936 29150711 3.390000e-49 206.0
4 TraesCS5D01G365900 chr6D 97.329 1947 48 2 656 2599 124597510 124599455 0.000000e+00 3304.0
5 TraesCS5D01G365900 chr6D 97.071 1946 48 4 657 2599 9124703 9126642 0.000000e+00 3269.0
6 TraesCS5D01G365900 chr2D 97.329 1947 48 2 656 2599 459776855 459778800 0.000000e+00 3304.0
7 TraesCS5D01G365900 chr2D 96.844 1014 29 1 657 1667 43889897 43890910 0.000000e+00 1692.0
8 TraesCS5D01G365900 chr3D 96.655 1943 36 3 657 2596 31790294 31792210 0.000000e+00 3201.0
9 TraesCS5D01G365900 chr3D 97.438 1015 22 2 656 1667 609330391 609329378 0.000000e+00 1727.0
10 TraesCS5D01G365900 chr3D 98.289 935 13 3 1667 2599 609329231 609328298 0.000000e+00 1635.0
11 TraesCS5D01G365900 chr3D 80.000 225 36 6 101 317 382104942 382105165 9.630000e-35 158.0
12 TraesCS5D01G365900 chr7D 97.064 1703 46 2 900 2599 188838525 188840226 0.000000e+00 2865.0
13 TraesCS5D01G365900 chr7D 97.230 1011 25 1 660 1667 497919307 497918297 0.000000e+00 1709.0
14 TraesCS5D01G365900 chr1D 96.795 1404 34 3 1199 2599 280841128 280842523 0.000000e+00 2333.0
15 TraesCS5D01G365900 chr3B 84.000 225 28 4 101 318 731365282 731365505 2.620000e-50 209.0
16 TraesCS5D01G365900 chr3B 80.804 224 35 3 100 316 470219717 470219495 4.450000e-38 169.0
17 TraesCS5D01G365900 chr5B 82.805 221 29 5 119 332 37111498 37111716 3.410000e-44 189.0
18 TraesCS5D01G365900 chr6B 82.297 209 28 4 116 316 570215951 570215744 3.440000e-39 172.0
19 TraesCS5D01G365900 chr1B 81.250 224 30 7 102 316 466172163 466172383 1.240000e-38 171.0
20 TraesCS5D01G365900 chr7B 80.097 206 33 5 116 314 259144396 259144192 2.080000e-31 147.0
21 TraesCS5D01G365900 chr7B 80.402 199 31 7 125 316 458536258 458536455 7.500000e-31 145.0
22 TraesCS5D01G365900 chr2A 88.571 70 6 2 101 168 458919912 458919843 1.660000e-12 84.2
23 TraesCS5D01G365900 chr2A 92.727 55 4 0 100 154 507337373 507337319 2.140000e-11 80.5
24 TraesCS5D01G365900 chr1A 90.476 63 4 2 92 154 399941154 399941094 5.960000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G365900 chr5D 442963764 442966362 2598 False 4800 4800 100.0000 1 2599 1 chr5D.!!$F2 2598
1 TraesCS5D01G365900 chr5D 435192753 435194699 1946 False 3295 3295 97.2290 654 2599 1 chr5D.!!$F1 1945
2 TraesCS5D01G365900 chr5D 45351868 45353780 1912 True 3151 3151 96.1970 657 2599 1 chr5D.!!$R2 1942
3 TraesCS5D01G365900 chr6D 124597510 124599455 1945 False 3304 3304 97.3290 656 2599 1 chr6D.!!$F2 1943
4 TraesCS5D01G365900 chr6D 9124703 9126642 1939 False 3269 3269 97.0710 657 2599 1 chr6D.!!$F1 1942
5 TraesCS5D01G365900 chr2D 459776855 459778800 1945 False 3304 3304 97.3290 656 2599 1 chr2D.!!$F2 1943
6 TraesCS5D01G365900 chr2D 43889897 43890910 1013 False 1692 1692 96.8440 657 1667 1 chr2D.!!$F1 1010
7 TraesCS5D01G365900 chr3D 31790294 31792210 1916 False 3201 3201 96.6550 657 2596 1 chr3D.!!$F1 1939
8 TraesCS5D01G365900 chr3D 609328298 609330391 2093 True 1681 1727 97.8635 656 2599 2 chr3D.!!$R1 1943
9 TraesCS5D01G365900 chr7D 188838525 188840226 1701 False 2865 2865 97.0640 900 2599 1 chr7D.!!$F1 1699
10 TraesCS5D01G365900 chr7D 497918297 497919307 1010 True 1709 1709 97.2300 660 1667 1 chr7D.!!$R1 1007
11 TraesCS5D01G365900 chr1D 280841128 280842523 1395 False 2333 2333 96.7950 1199 2599 1 chr1D.!!$F1 1400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 324 0.038166 ACGGAGGTAGTACGACCCAA 59.962 55.0 20.25 0.0 40.74 4.12 F
648 649 0.109342 CCTTCACCTTCACCACTGCT 59.891 55.0 0.00 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 1289 1.078143 GCCTTCCCGTGCTTCTCAT 60.078 57.895 0.0 0.0 0.00 2.90 R
2288 2473 2.550180 GCTTCAACTTCAGGTTCTGGAC 59.450 50.000 0.0 0.0 35.74 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.316205 ACCACATGCATGCTCATTTATG 57.684 40.909 26.53 14.90 0.00 1.90
22 23 3.702548 ACCACATGCATGCTCATTTATGT 59.297 39.130 26.53 15.56 0.00 2.29
23 24 4.888823 ACCACATGCATGCTCATTTATGTA 59.111 37.500 26.53 0.00 0.00 2.29
24 25 5.009310 ACCACATGCATGCTCATTTATGTAG 59.991 40.000 26.53 13.78 0.00 2.74
25 26 5.239963 CCACATGCATGCTCATTTATGTAGA 59.760 40.000 26.53 0.00 0.00 2.59
26 27 6.072119 CCACATGCATGCTCATTTATGTAGAT 60.072 38.462 26.53 0.00 0.00 1.98
27 28 6.801862 CACATGCATGCTCATTTATGTAGATG 59.198 38.462 26.53 11.31 0.00 2.90
28 29 5.366829 TGCATGCTCATTTATGTAGATGC 57.633 39.130 20.33 0.00 0.00 3.91
29 30 4.822896 TGCATGCTCATTTATGTAGATGCA 59.177 37.500 20.33 15.00 38.72 3.96
30 31 5.048991 TGCATGCTCATTTATGTAGATGCAG 60.049 40.000 20.33 0.00 36.55 4.41
31 32 5.391449 CATGCTCATTTATGTAGATGCAGC 58.609 41.667 0.00 0.00 32.65 5.25
32 33 4.453751 TGCTCATTTATGTAGATGCAGCA 58.546 39.130 4.07 0.00 35.78 4.41
33 34 4.274214 TGCTCATTTATGTAGATGCAGCAC 59.726 41.667 4.07 0.80 34.55 4.40
34 35 4.274214 GCTCATTTATGTAGATGCAGCACA 59.726 41.667 4.07 7.22 32.10 4.57
35 36 5.048921 GCTCATTTATGTAGATGCAGCACAT 60.049 40.000 19.00 19.00 43.54 3.21
36 37 6.514541 GCTCATTTATGTAGATGCAGCACATT 60.515 38.462 19.83 5.33 39.84 2.71
37 38 7.337480 TCATTTATGTAGATGCAGCACATTT 57.663 32.000 19.83 5.87 39.84 2.32
38 39 7.774134 TCATTTATGTAGATGCAGCACATTTT 58.226 30.769 19.83 5.32 39.84 1.82
39 40 8.252417 TCATTTATGTAGATGCAGCACATTTTT 58.748 29.630 19.83 5.04 39.84 1.94
40 41 7.815398 TTTATGTAGATGCAGCACATTTTTG 57.185 32.000 19.83 0.00 39.84 2.44
41 42 4.177165 TGTAGATGCAGCACATTTTTGG 57.823 40.909 4.07 0.00 39.84 3.28
42 43 3.573538 TGTAGATGCAGCACATTTTTGGT 59.426 39.130 4.07 0.00 39.84 3.67
43 44 3.756933 AGATGCAGCACATTTTTGGTT 57.243 38.095 4.07 0.00 39.84 3.67
44 45 3.656559 AGATGCAGCACATTTTTGGTTC 58.343 40.909 4.07 0.00 39.84 3.62
45 46 1.850377 TGCAGCACATTTTTGGTTCG 58.150 45.000 0.00 0.00 0.00 3.95
46 47 1.135915 TGCAGCACATTTTTGGTTCGT 59.864 42.857 0.00 0.00 0.00 3.85
47 48 2.200899 GCAGCACATTTTTGGTTCGTT 58.799 42.857 0.00 0.00 0.00 3.85
48 49 2.607180 GCAGCACATTTTTGGTTCGTTT 59.393 40.909 0.00 0.00 0.00 3.60
49 50 3.063316 GCAGCACATTTTTGGTTCGTTTT 59.937 39.130 0.00 0.00 0.00 2.43
50 51 4.436718 GCAGCACATTTTTGGTTCGTTTTT 60.437 37.500 0.00 0.00 0.00 1.94
51 52 5.020758 CAGCACATTTTTGGTTCGTTTTTG 58.979 37.500 0.00 0.00 0.00 2.44
52 53 4.932200 AGCACATTTTTGGTTCGTTTTTGA 59.068 33.333 0.00 0.00 0.00 2.69
53 54 5.409826 AGCACATTTTTGGTTCGTTTTTGAA 59.590 32.000 0.00 0.00 0.00 2.69
54 55 5.506485 GCACATTTTTGGTTCGTTTTTGAAC 59.494 36.000 0.00 0.00 45.91 3.18
64 65 1.750351 GTTTTTGAACGAGGGAACGC 58.250 50.000 0.00 0.00 36.70 4.84
65 66 0.664224 TTTTTGAACGAGGGAACGCC 59.336 50.000 0.00 0.00 36.70 5.68
120 121 8.673626 CGTAAGTTTATTAGTCCTCGTTGTAA 57.326 34.615 0.00 0.00 0.00 2.41
121 122 9.294030 CGTAAGTTTATTAGTCCTCGTTGTAAT 57.706 33.333 0.00 0.00 0.00 1.89
124 125 8.928270 AGTTTATTAGTCCTCGTTGTAATCTG 57.072 34.615 0.00 0.00 0.00 2.90
125 126 8.529476 AGTTTATTAGTCCTCGTTGTAATCTGT 58.471 33.333 0.00 0.00 0.00 3.41
126 127 8.592998 GTTTATTAGTCCTCGTTGTAATCTGTG 58.407 37.037 0.00 0.00 0.00 3.66
127 128 5.717078 TTAGTCCTCGTTGTAATCTGTGT 57.283 39.130 0.00 0.00 0.00 3.72
128 129 4.175787 AGTCCTCGTTGTAATCTGTGTC 57.824 45.455 0.00 0.00 0.00 3.67
129 130 3.572682 AGTCCTCGTTGTAATCTGTGTCA 59.427 43.478 0.00 0.00 0.00 3.58
130 131 4.038763 AGTCCTCGTTGTAATCTGTGTCAA 59.961 41.667 0.00 0.00 0.00 3.18
131 132 4.748102 GTCCTCGTTGTAATCTGTGTCAAA 59.252 41.667 0.00 0.00 0.00 2.69
132 133 5.408604 GTCCTCGTTGTAATCTGTGTCAAAT 59.591 40.000 0.00 0.00 0.00 2.32
133 134 5.995282 TCCTCGTTGTAATCTGTGTCAAATT 59.005 36.000 0.00 0.00 0.00 1.82
134 135 6.485313 TCCTCGTTGTAATCTGTGTCAAATTT 59.515 34.615 0.00 0.00 0.00 1.82
135 136 7.012894 TCCTCGTTGTAATCTGTGTCAAATTTT 59.987 33.333 0.00 0.00 0.00 1.82
136 137 7.113404 CCTCGTTGTAATCTGTGTCAAATTTTG 59.887 37.037 2.59 2.59 0.00 2.44
137 138 7.698628 TCGTTGTAATCTGTGTCAAATTTTGA 58.301 30.769 7.74 7.74 37.33 2.69
138 139 8.349245 TCGTTGTAATCTGTGTCAAATTTTGAT 58.651 29.630 14.54 0.44 42.47 2.57
139 140 8.629986 CGTTGTAATCTGTGTCAAATTTTGATC 58.370 33.333 14.54 11.31 42.47 2.92
140 141 9.462174 GTTGTAATCTGTGTCAAATTTTGATCA 57.538 29.630 14.54 14.55 42.47 2.92
229 230 9.967346 TGAATCCAACGTTATAATTTTTGTTGA 57.033 25.926 0.00 3.80 39.11 3.18
231 232 9.751542 AATCCAACGTTATAATTTTTGTTGACA 57.248 25.926 0.00 0.00 39.11 3.58
232 233 9.921637 ATCCAACGTTATAATTTTTGTTGACAT 57.078 25.926 0.00 7.15 39.11 3.06
233 234 9.186323 TCCAACGTTATAATTTTTGTTGACATG 57.814 29.630 0.00 0.00 39.11 3.21
234 235 7.949428 CCAACGTTATAATTTTTGTTGACATGC 59.051 33.333 0.00 0.00 39.11 4.06
235 236 8.483218 CAACGTTATAATTTTTGTTGACATGCA 58.517 29.630 0.00 0.00 39.11 3.96
236 237 8.002433 ACGTTATAATTTTTGTTGACATGCAC 57.998 30.769 0.00 0.00 0.00 4.57
237 238 7.149047 ACGTTATAATTTTTGTTGACATGCACG 60.149 33.333 0.00 0.00 0.00 5.34
238 239 7.060059 CGTTATAATTTTTGTTGACATGCACGA 59.940 33.333 0.00 0.00 0.00 4.35
239 240 8.859156 GTTATAATTTTTGTTGACATGCACGAT 58.141 29.630 0.00 0.00 0.00 3.73
240 241 5.827568 AATTTTTGTTGACATGCACGATC 57.172 34.783 0.00 0.00 0.00 3.69
241 242 3.978718 TTTTGTTGACATGCACGATCA 57.021 38.095 0.00 0.00 0.00 2.92
242 243 4.502171 TTTTGTTGACATGCACGATCAT 57.498 36.364 0.00 0.00 0.00 2.45
243 244 4.502171 TTTGTTGACATGCACGATCATT 57.498 36.364 0.00 0.00 0.00 2.57
244 245 4.502171 TTGTTGACATGCACGATCATTT 57.498 36.364 0.00 0.00 0.00 2.32
245 246 4.502171 TGTTGACATGCACGATCATTTT 57.498 36.364 0.00 0.00 0.00 1.82
246 247 4.228317 TGTTGACATGCACGATCATTTTG 58.772 39.130 0.00 0.00 0.00 2.44
247 248 4.229096 GTTGACATGCACGATCATTTTGT 58.771 39.130 0.00 0.00 0.00 2.83
248 249 4.082274 TGACATGCACGATCATTTTGTC 57.918 40.909 4.70 4.70 0.00 3.18
249 250 3.501445 TGACATGCACGATCATTTTGTCA 59.499 39.130 9.32 9.32 29.84 3.58
250 251 4.087510 ACATGCACGATCATTTTGTCAG 57.912 40.909 0.00 0.00 0.00 3.51
251 252 3.503363 ACATGCACGATCATTTTGTCAGT 59.497 39.130 0.00 0.00 0.00 3.41
252 253 4.022935 ACATGCACGATCATTTTGTCAGTT 60.023 37.500 0.00 0.00 0.00 3.16
253 254 5.181056 ACATGCACGATCATTTTGTCAGTTA 59.819 36.000 0.00 0.00 0.00 2.24
254 255 5.681337 TGCACGATCATTTTGTCAGTTAA 57.319 34.783 0.00 0.00 0.00 2.01
255 256 6.252967 TGCACGATCATTTTGTCAGTTAAT 57.747 33.333 0.00 0.00 0.00 1.40
256 257 6.676950 TGCACGATCATTTTGTCAGTTAATT 58.323 32.000 0.00 0.00 0.00 1.40
257 258 7.144661 TGCACGATCATTTTGTCAGTTAATTT 58.855 30.769 0.00 0.00 0.00 1.82
258 259 7.651304 TGCACGATCATTTTGTCAGTTAATTTT 59.349 29.630 0.00 0.00 0.00 1.82
259 260 8.487176 GCACGATCATTTTGTCAGTTAATTTTT 58.513 29.630 0.00 0.00 0.00 1.94
260 261 9.782028 CACGATCATTTTGTCAGTTAATTTTTG 57.218 29.630 0.00 0.00 0.00 2.44
261 262 9.743057 ACGATCATTTTGTCAGTTAATTTTTGA 57.257 25.926 0.00 0.00 0.00 2.69
289 290 8.514330 AAAATTTAGCACGAATTATACAGGGA 57.486 30.769 0.00 0.00 0.00 4.20
290 291 8.514330 AAATTTAGCACGAATTATACAGGGAA 57.486 30.769 0.00 0.00 0.00 3.97
291 292 6.913873 TTTAGCACGAATTATACAGGGAAC 57.086 37.500 0.00 0.00 0.00 3.62
292 293 4.755266 AGCACGAATTATACAGGGAACT 57.245 40.909 0.00 0.00 46.44 3.01
293 294 5.864418 AGCACGAATTATACAGGGAACTA 57.136 39.130 0.00 0.00 40.21 2.24
294 295 6.229936 AGCACGAATTATACAGGGAACTAA 57.770 37.500 0.00 0.00 40.21 2.24
295 296 6.827727 AGCACGAATTATACAGGGAACTAAT 58.172 36.000 0.00 0.00 40.21 1.73
296 297 7.959175 AGCACGAATTATACAGGGAACTAATA 58.041 34.615 0.00 0.00 40.21 0.98
297 298 8.426489 AGCACGAATTATACAGGGAACTAATAA 58.574 33.333 0.00 0.00 40.21 1.40
298 299 9.048446 GCACGAATTATACAGGGAACTAATAAA 57.952 33.333 0.00 0.00 40.21 1.40
300 301 9.252962 ACGAATTATACAGGGAACTAATAAACG 57.747 33.333 0.00 0.00 40.21 3.60
301 302 9.467258 CGAATTATACAGGGAACTAATAAACGA 57.533 33.333 0.00 0.00 40.21 3.85
303 304 9.774413 AATTATACAGGGAACTAATAAACGAGG 57.226 33.333 0.00 0.00 40.21 4.63
304 305 8.537728 TTATACAGGGAACTAATAAACGAGGA 57.462 34.615 0.00 0.00 40.21 3.71
305 306 5.082251 ACAGGGAACTAATAAACGAGGAC 57.918 43.478 0.00 0.00 40.21 3.85
306 307 4.110482 CAGGGAACTAATAAACGAGGACG 58.890 47.826 0.00 0.00 40.21 4.79
307 308 3.131755 AGGGAACTAATAAACGAGGACGG 59.868 47.826 0.00 0.00 41.26 4.79
308 309 3.131046 GGGAACTAATAAACGAGGACGGA 59.869 47.826 0.00 0.00 44.46 4.69
309 310 4.357996 GGAACTAATAAACGAGGACGGAG 58.642 47.826 0.00 0.00 44.46 4.63
310 311 4.357996 GAACTAATAAACGAGGACGGAGG 58.642 47.826 0.00 0.00 44.46 4.30
311 312 3.359950 ACTAATAAACGAGGACGGAGGT 58.640 45.455 0.00 0.00 44.46 3.85
312 313 4.526970 ACTAATAAACGAGGACGGAGGTA 58.473 43.478 0.00 0.00 44.46 3.08
313 314 4.578105 ACTAATAAACGAGGACGGAGGTAG 59.422 45.833 0.00 0.00 44.46 3.18
314 315 2.496899 TAAACGAGGACGGAGGTAGT 57.503 50.000 0.00 0.00 44.46 2.73
315 316 2.496899 AAACGAGGACGGAGGTAGTA 57.503 50.000 0.00 0.00 44.46 1.82
316 317 1.743996 AACGAGGACGGAGGTAGTAC 58.256 55.000 0.00 0.00 44.46 2.73
317 318 0.460987 ACGAGGACGGAGGTAGTACG 60.461 60.000 0.00 0.00 44.46 3.67
318 319 0.179100 CGAGGACGGAGGTAGTACGA 60.179 60.000 0.00 0.00 35.72 3.43
319 320 1.294857 GAGGACGGAGGTAGTACGAC 58.705 60.000 0.00 0.00 0.00 4.34
320 321 0.107459 AGGACGGAGGTAGTACGACC 60.107 60.000 16.73 16.73 41.48 4.79
321 322 1.098129 GGACGGAGGTAGTACGACCC 61.098 65.000 20.25 12.15 40.74 4.46
322 323 0.392998 GACGGAGGTAGTACGACCCA 60.393 60.000 20.25 0.00 40.74 4.51
323 324 0.038166 ACGGAGGTAGTACGACCCAA 59.962 55.000 20.25 0.00 40.74 4.12
324 325 1.176527 CGGAGGTAGTACGACCCAAA 58.823 55.000 20.25 0.00 40.74 3.28
325 326 1.545582 CGGAGGTAGTACGACCCAAAA 59.454 52.381 20.25 0.00 40.74 2.44
326 327 2.029110 CGGAGGTAGTACGACCCAAAAA 60.029 50.000 20.25 0.00 40.74 1.94
348 349 6.806120 AAATTTAATTATTTCACCGCTCGC 57.194 33.333 0.00 0.00 0.00 5.03
349 350 5.751243 ATTTAATTATTTCACCGCTCGCT 57.249 34.783 0.00 0.00 0.00 4.93
350 351 4.789095 TTAATTATTTCACCGCTCGCTC 57.211 40.909 0.00 0.00 0.00 5.03
351 352 1.209128 ATTATTTCACCGCTCGCTCG 58.791 50.000 0.00 0.00 0.00 5.03
352 353 1.418342 TTATTTCACCGCTCGCTCGC 61.418 55.000 0.00 0.00 0.00 5.03
353 354 2.279502 TATTTCACCGCTCGCTCGCT 62.280 55.000 0.00 0.00 0.00 4.93
354 355 4.778415 TTCACCGCTCGCTCGCTC 62.778 66.667 0.00 0.00 0.00 5.03
381 382 4.805231 CACGCACGGCCATCGGTA 62.805 66.667 2.24 0.00 44.45 4.02
382 383 4.807039 ACGCACGGCCATCGGTAC 62.807 66.667 2.24 0.00 44.45 3.34
384 385 4.460683 GCACGGCCATCGGTACCA 62.461 66.667 13.54 0.00 44.45 3.25
385 386 2.202878 CACGGCCATCGGTACCAG 60.203 66.667 13.54 5.03 44.45 4.00
386 387 2.682494 ACGGCCATCGGTACCAGT 60.682 61.111 13.54 0.00 44.45 4.00
387 388 1.380246 ACGGCCATCGGTACCAGTA 60.380 57.895 13.54 0.00 44.45 2.74
388 389 1.066918 CGGCCATCGGTACCAGTAC 59.933 63.158 13.54 0.00 34.75 2.73
389 390 1.066918 GGCCATCGGTACCAGTACG 59.933 63.158 13.54 0.00 36.94 3.67
390 391 1.590792 GCCATCGGTACCAGTACGC 60.591 63.158 13.54 2.41 36.94 4.42
391 392 1.298863 CCATCGGTACCAGTACGCG 60.299 63.158 13.54 3.53 36.94 6.01
392 393 1.942712 CATCGGTACCAGTACGCGC 60.943 63.158 13.54 0.00 36.94 6.86
393 394 3.129913 ATCGGTACCAGTACGCGCC 62.130 63.158 13.54 0.00 36.94 6.53
395 396 4.120331 GGTACCAGTACGCGCCGT 62.120 66.667 5.73 5.91 44.35 5.68
396 397 2.877582 GTACCAGTACGCGCCGTG 60.878 66.667 5.73 0.00 41.39 4.94
397 398 4.118995 TACCAGTACGCGCCGTGG 62.119 66.667 17.14 17.14 41.39 4.94
400 401 4.415332 CAGTACGCGCCGTGGACT 62.415 66.667 10.29 10.29 41.39 3.85
401 402 4.112341 AGTACGCGCCGTGGACTC 62.112 66.667 10.29 0.00 41.39 3.36
407 408 4.180946 CGCCGTGGACTCGAGGAG 62.181 72.222 18.41 2.78 35.52 3.69
408 409 3.827898 GCCGTGGACTCGAGGAGG 61.828 72.222 18.41 12.67 33.35 4.30
409 410 3.141488 CCGTGGACTCGAGGAGGG 61.141 72.222 18.41 11.06 33.35 4.30
410 411 3.827898 CGTGGACTCGAGGAGGGC 61.828 72.222 18.41 1.95 33.35 5.19
411 412 3.462678 GTGGACTCGAGGAGGGCC 61.463 72.222 18.41 10.09 33.35 5.80
430 431 3.825611 GCCGGCCGTGATTTGCAT 61.826 61.111 26.12 0.00 0.00 3.96
431 432 2.102749 CCGGCCGTGATTTGCATG 59.897 61.111 26.12 0.00 0.00 4.06
432 433 2.580326 CGGCCGTGATTTGCATGC 60.580 61.111 19.50 11.82 31.94 4.06
433 434 2.572812 GGCCGTGATTTGCATGCA 59.427 55.556 18.46 18.46 31.94 3.96
434 435 1.142314 GGCCGTGATTTGCATGCAT 59.858 52.632 23.37 7.51 31.94 3.96
435 436 1.149361 GGCCGTGATTTGCATGCATG 61.149 55.000 23.37 22.70 31.94 4.06
436 437 1.149361 GCCGTGATTTGCATGCATGG 61.149 55.000 27.34 14.81 40.76 3.66
437 438 1.149361 CCGTGATTTGCATGCATGGC 61.149 55.000 27.34 19.18 32.51 4.40
438 439 0.458716 CGTGATTTGCATGCATGGCA 60.459 50.000 27.34 21.38 44.86 4.92
442 443 3.049470 TTGCATGCATGGCAACGT 58.951 50.000 27.34 0.00 45.57 3.99
443 444 1.366734 TTGCATGCATGGCAACGTT 59.633 47.368 27.34 0.00 45.57 3.99
444 445 0.944788 TTGCATGCATGGCAACGTTG 60.945 50.000 27.34 23.90 45.57 4.10
445 446 2.095847 GCATGCATGGCAACGTTGG 61.096 57.895 28.33 13.51 43.62 3.77
446 447 1.289694 CATGCATGGCAACGTTGGT 59.710 52.632 28.33 0.00 43.62 3.67
447 448 0.733566 CATGCATGGCAACGTTGGTC 60.734 55.000 28.33 13.36 43.62 4.02
448 449 2.126888 GCATGGCAACGTTGGTCG 60.127 61.111 28.33 4.64 46.00 4.79
457 458 3.816388 CGTTGGTCGTGGTTTGGT 58.184 55.556 0.00 0.00 34.52 3.67
458 459 2.099994 CGTTGGTCGTGGTTTGGTT 58.900 52.632 0.00 0.00 34.52 3.67
459 460 0.452585 CGTTGGTCGTGGTTTGGTTT 59.547 50.000 0.00 0.00 34.52 3.27
460 461 1.795889 CGTTGGTCGTGGTTTGGTTTG 60.796 52.381 0.00 0.00 34.52 2.93
461 462 1.202817 GTTGGTCGTGGTTTGGTTTGT 59.797 47.619 0.00 0.00 0.00 2.83
462 463 0.811915 TGGTCGTGGTTTGGTTTGTG 59.188 50.000 0.00 0.00 0.00 3.33
463 464 0.812549 GGTCGTGGTTTGGTTTGTGT 59.187 50.000 0.00 0.00 0.00 3.72
464 465 1.468395 GGTCGTGGTTTGGTTTGTGTG 60.468 52.381 0.00 0.00 0.00 3.82
465 466 0.811915 TCGTGGTTTGGTTTGTGTGG 59.188 50.000 0.00 0.00 0.00 4.17
466 467 0.811915 CGTGGTTTGGTTTGTGTGGA 59.188 50.000 0.00 0.00 0.00 4.02
467 468 1.202582 CGTGGTTTGGTTTGTGTGGAA 59.797 47.619 0.00 0.00 0.00 3.53
468 469 2.352814 CGTGGTTTGGTTTGTGTGGAAA 60.353 45.455 0.00 0.00 0.00 3.13
469 470 2.997303 GTGGTTTGGTTTGTGTGGAAAC 59.003 45.455 0.00 0.00 35.45 2.78
473 474 3.930400 GGTTTGTGTGGAAACCGAC 57.070 52.632 0.00 0.00 44.14 4.79
474 475 0.382873 GGTTTGTGTGGAAACCGACC 59.617 55.000 0.00 0.00 44.14 4.79
475 476 0.382873 GTTTGTGTGGAAACCGACCC 59.617 55.000 0.00 0.00 30.81 4.46
476 477 0.752376 TTTGTGTGGAAACCGACCCC 60.752 55.000 0.00 0.00 0.00 4.95
477 478 2.667199 GTGTGGAAACCGACCCCG 60.667 66.667 0.00 0.00 0.00 5.73
478 479 3.162858 TGTGGAAACCGACCCCGT 61.163 61.111 0.00 0.00 0.00 5.28
479 480 2.667199 GTGGAAACCGACCCCGTG 60.667 66.667 0.00 0.00 0.00 4.94
480 481 3.162858 TGGAAACCGACCCCGTGT 61.163 61.111 0.00 0.00 0.00 4.49
481 482 2.667199 GGAAACCGACCCCGTGTG 60.667 66.667 0.00 0.00 0.00 3.82
482 483 2.109593 GAAACCGACCCCGTGTGT 59.890 61.111 0.00 0.00 0.00 3.72
483 484 2.203098 AAACCGACCCCGTGTGTG 60.203 61.111 0.00 0.00 0.00 3.82
484 485 2.928642 GAAACCGACCCCGTGTGTGT 62.929 60.000 0.00 0.00 0.00 3.72
485 486 2.540028 AAACCGACCCCGTGTGTGTT 62.540 55.000 0.00 0.00 0.00 3.32
486 487 2.970324 CCGACCCCGTGTGTGTTG 60.970 66.667 0.00 0.00 0.00 3.33
487 488 3.645975 CGACCCCGTGTGTGTTGC 61.646 66.667 0.00 0.00 0.00 4.17
488 489 3.645975 GACCCCGTGTGTGTTGCG 61.646 66.667 0.00 0.00 0.00 4.85
491 492 2.663520 CCCGTGTGTGTTGCGCTA 60.664 61.111 9.73 0.00 0.00 4.26
492 493 2.667318 CCCGTGTGTGTTGCGCTAG 61.667 63.158 9.73 0.00 0.00 3.42
493 494 1.663388 CCGTGTGTGTTGCGCTAGA 60.663 57.895 9.73 0.00 0.00 2.43
494 495 1.487231 CGTGTGTGTTGCGCTAGAC 59.513 57.895 12.03 12.03 0.00 2.59
495 496 0.939577 CGTGTGTGTTGCGCTAGACT 60.940 55.000 18.80 0.00 0.00 3.24
496 497 0.508641 GTGTGTGTTGCGCTAGACTG 59.491 55.000 18.80 0.00 0.00 3.51
497 498 0.599991 TGTGTGTTGCGCTAGACTGG 60.600 55.000 18.80 0.00 0.00 4.00
498 499 1.667830 TGTGTTGCGCTAGACTGGC 60.668 57.895 18.80 0.00 0.00 4.85
499 500 2.047274 TGTTGCGCTAGACTGGCC 60.047 61.111 9.73 0.00 0.00 5.36
500 501 2.047274 GTTGCGCTAGACTGGCCA 60.047 61.111 9.73 4.71 0.00 5.36
501 502 1.671054 GTTGCGCTAGACTGGCCAA 60.671 57.895 7.01 7.76 0.00 4.52
502 503 1.026718 GTTGCGCTAGACTGGCCAAT 61.027 55.000 7.01 0.00 0.00 3.16
503 504 0.744414 TTGCGCTAGACTGGCCAATC 60.744 55.000 5.94 5.94 0.00 2.67
504 505 2.240500 GCGCTAGACTGGCCAATCG 61.241 63.158 8.85 0.91 0.00 3.34
505 506 2.240500 CGCTAGACTGGCCAATCGC 61.241 63.158 8.85 6.27 0.00 4.58
506 507 1.153369 GCTAGACTGGCCAATCGCA 60.153 57.895 8.85 0.00 40.31 5.10
507 508 0.533755 GCTAGACTGGCCAATCGCAT 60.534 55.000 8.85 0.00 40.31 4.73
508 509 1.224075 CTAGACTGGCCAATCGCATG 58.776 55.000 8.85 0.00 40.31 4.06
509 510 0.815213 TAGACTGGCCAATCGCATGC 60.815 55.000 8.85 7.91 40.31 4.06
510 511 2.361483 ACTGGCCAATCGCATGCA 60.361 55.556 19.57 5.34 40.31 3.96
511 512 1.731433 GACTGGCCAATCGCATGCAT 61.731 55.000 19.57 7.64 40.31 3.96
512 513 1.299850 CTGGCCAATCGCATGCATG 60.300 57.895 22.70 22.70 40.31 4.06
526 527 2.404923 TGCATGCATGGATTTTTGGG 57.595 45.000 27.34 0.00 0.00 4.12
527 528 1.907255 TGCATGCATGGATTTTTGGGA 59.093 42.857 27.34 0.00 0.00 4.37
528 529 2.506231 TGCATGCATGGATTTTTGGGAT 59.494 40.909 27.34 0.00 0.00 3.85
529 530 3.135994 GCATGCATGGATTTTTGGGATC 58.864 45.455 27.34 2.70 0.00 3.36
530 531 3.386486 CATGCATGGATTTTTGGGATCG 58.614 45.455 19.40 0.00 0.00 3.69
531 532 2.732763 TGCATGGATTTTTGGGATCGA 58.267 42.857 0.00 0.00 0.00 3.59
532 533 3.298619 TGCATGGATTTTTGGGATCGAT 58.701 40.909 0.00 0.00 0.00 3.59
533 534 3.318839 TGCATGGATTTTTGGGATCGATC 59.681 43.478 17.36 17.36 0.00 3.69
534 535 3.305608 GCATGGATTTTTGGGATCGATCC 60.306 47.826 32.57 32.57 46.41 3.36
535 536 3.951563 TGGATTTTTGGGATCGATCCT 57.048 42.857 36.72 20.82 46.35 3.24
536 537 4.249638 TGGATTTTTGGGATCGATCCTT 57.750 40.909 36.72 18.56 46.35 3.36
537 538 4.207165 TGGATTTTTGGGATCGATCCTTC 58.793 43.478 36.72 24.64 46.35 3.46
538 539 3.570125 GGATTTTTGGGATCGATCCTTCC 59.430 47.826 36.72 27.14 46.35 3.46
539 540 4.464947 GATTTTTGGGATCGATCCTTCCT 58.535 43.478 36.72 20.26 46.35 3.36
540 541 4.316025 TTTTTGGGATCGATCCTTCCTT 57.684 40.909 36.72 0.00 46.35 3.36
541 542 4.316025 TTTTGGGATCGATCCTTCCTTT 57.684 40.909 36.72 0.00 46.35 3.11
542 543 3.560636 TTGGGATCGATCCTTCCTTTC 57.439 47.619 36.72 22.06 46.35 2.62
543 544 1.768870 TGGGATCGATCCTTCCTTTCC 59.231 52.381 36.72 21.41 46.35 3.13
544 545 1.270358 GGGATCGATCCTTCCTTTCCG 60.270 57.143 36.72 0.00 46.35 4.30
545 546 1.270358 GGATCGATCCTTCCTTTCCGG 60.270 57.143 32.91 0.00 43.73 5.14
546 547 0.759346 ATCGATCCTTCCTTTCCGGG 59.241 55.000 0.00 0.00 0.00 5.73
547 548 0.324923 TCGATCCTTCCTTTCCGGGA 60.325 55.000 0.00 0.00 0.00 5.14
548 549 0.539986 CGATCCTTCCTTTCCGGGAA 59.460 55.000 5.09 5.09 42.39 3.97
549 550 1.742750 CGATCCTTCCTTTCCGGGAAC 60.743 57.143 9.46 0.00 40.08 3.62
562 563 2.046217 GGAACCTGCGTCCTTCCC 60.046 66.667 0.00 0.00 0.00 3.97
563 564 2.593956 GGAACCTGCGTCCTTCCCT 61.594 63.158 0.00 0.00 0.00 4.20
564 565 1.375326 GAACCTGCGTCCTTCCCTT 59.625 57.895 0.00 0.00 0.00 3.95
565 566 0.250770 GAACCTGCGTCCTTCCCTTT 60.251 55.000 0.00 0.00 0.00 3.11
566 567 0.185175 AACCTGCGTCCTTCCCTTTT 59.815 50.000 0.00 0.00 0.00 2.27
567 568 0.250770 ACCTGCGTCCTTCCCTTTTC 60.251 55.000 0.00 0.00 0.00 2.29
568 569 1.298859 CCTGCGTCCTTCCCTTTTCG 61.299 60.000 0.00 0.00 0.00 3.46
569 570 1.298859 CTGCGTCCTTCCCTTTTCGG 61.299 60.000 0.00 0.00 0.00 4.30
582 583 3.900941 CCTTTTCGGGATGTTTGACAAG 58.099 45.455 0.00 0.00 0.00 3.16
583 584 3.317993 CCTTTTCGGGATGTTTGACAAGT 59.682 43.478 0.00 0.00 0.00 3.16
584 585 4.517453 CCTTTTCGGGATGTTTGACAAGTA 59.483 41.667 0.00 0.00 0.00 2.24
585 586 5.334879 CCTTTTCGGGATGTTTGACAAGTAG 60.335 44.000 0.00 0.00 0.00 2.57
586 587 3.328382 TCGGGATGTTTGACAAGTAGG 57.672 47.619 0.00 0.00 0.00 3.18
587 588 2.901192 TCGGGATGTTTGACAAGTAGGA 59.099 45.455 0.00 0.00 0.00 2.94
588 589 3.056107 TCGGGATGTTTGACAAGTAGGAG 60.056 47.826 0.00 0.00 0.00 3.69
589 590 3.306780 CGGGATGTTTGACAAGTAGGAGT 60.307 47.826 0.00 0.00 0.00 3.85
590 591 4.081862 CGGGATGTTTGACAAGTAGGAGTA 60.082 45.833 0.00 0.00 0.00 2.59
591 592 5.395324 CGGGATGTTTGACAAGTAGGAGTAT 60.395 44.000 0.00 0.00 0.00 2.12
592 593 5.817816 GGGATGTTTGACAAGTAGGAGTATG 59.182 44.000 0.00 0.00 0.00 2.39
593 594 6.407202 GGATGTTTGACAAGTAGGAGTATGT 58.593 40.000 0.00 0.00 0.00 2.29
594 595 6.879458 GGATGTTTGACAAGTAGGAGTATGTT 59.121 38.462 0.00 0.00 0.00 2.71
595 596 7.390718 GGATGTTTGACAAGTAGGAGTATGTTT 59.609 37.037 0.00 0.00 0.00 2.83
596 597 7.490962 TGTTTGACAAGTAGGAGTATGTTTG 57.509 36.000 0.00 0.00 0.00 2.93
597 598 7.276658 TGTTTGACAAGTAGGAGTATGTTTGA 58.723 34.615 0.00 0.00 0.00 2.69
598 599 7.225931 TGTTTGACAAGTAGGAGTATGTTTGAC 59.774 37.037 0.00 0.00 0.00 3.18
599 600 6.665992 TGACAAGTAGGAGTATGTTTGACT 57.334 37.500 0.00 0.00 0.00 3.41
600 601 7.062749 TGACAAGTAGGAGTATGTTTGACTT 57.937 36.000 0.00 0.00 0.00 3.01
601 602 6.929049 TGACAAGTAGGAGTATGTTTGACTTG 59.071 38.462 9.64 9.64 44.90 3.16
602 603 7.062749 ACAAGTAGGAGTATGTTTGACTTGA 57.937 36.000 16.37 0.00 43.06 3.02
603 604 7.506114 ACAAGTAGGAGTATGTTTGACTTGAA 58.494 34.615 16.37 0.00 43.06 2.69
604 605 7.441458 ACAAGTAGGAGTATGTTTGACTTGAAC 59.559 37.037 16.37 0.00 43.06 3.18
605 606 7.062749 AGTAGGAGTATGTTTGACTTGAACA 57.937 36.000 0.00 0.00 40.86 3.18
606 607 7.155328 AGTAGGAGTATGTTTGACTTGAACAG 58.845 38.462 0.00 0.00 40.04 3.16
607 608 5.930135 AGGAGTATGTTTGACTTGAACAGT 58.070 37.500 0.00 0.00 40.04 3.55
608 609 6.357367 AGGAGTATGTTTGACTTGAACAGTT 58.643 36.000 0.00 0.00 40.04 3.16
609 610 6.483640 AGGAGTATGTTTGACTTGAACAGTTC 59.516 38.462 6.32 6.32 40.04 3.01
610 611 6.260050 GGAGTATGTTTGACTTGAACAGTTCA 59.740 38.462 12.24 12.24 40.04 3.18
611 612 7.041098 GGAGTATGTTTGACTTGAACAGTTCAT 60.041 37.037 16.89 2.80 40.04 2.57
612 613 7.865707 AGTATGTTTGACTTGAACAGTTCATC 58.134 34.615 16.89 12.58 40.04 2.92
613 614 5.155509 TGTTTGACTTGAACAGTTCATCG 57.844 39.130 16.89 12.98 39.84 3.84
614 615 4.873259 TGTTTGACTTGAACAGTTCATCGA 59.127 37.500 16.89 9.43 39.84 3.59
615 616 5.006649 TGTTTGACTTGAACAGTTCATCGAG 59.993 40.000 16.89 13.38 39.84 4.04
616 617 3.653344 TGACTTGAACAGTTCATCGAGG 58.347 45.455 16.89 7.72 39.84 4.63
617 618 3.320826 TGACTTGAACAGTTCATCGAGGA 59.679 43.478 16.89 0.00 39.84 3.71
618 619 3.919216 ACTTGAACAGTTCATCGAGGAG 58.081 45.455 16.89 12.02 39.84 3.69
619 620 3.322254 ACTTGAACAGTTCATCGAGGAGT 59.678 43.478 16.89 12.64 39.84 3.85
620 621 3.577649 TGAACAGTTCATCGAGGAGTC 57.422 47.619 12.24 0.00 34.08 3.36
621 622 2.095212 TGAACAGTTCATCGAGGAGTCG 60.095 50.000 12.24 0.00 40.25 4.18
630 631 4.246053 GAGGAGTCGAGGAGGACC 57.754 66.667 0.00 0.00 37.66 4.46
640 641 3.893089 AGGAGGACCTTCACCTTCA 57.107 52.632 1.60 0.00 45.36 3.02
641 642 1.353091 AGGAGGACCTTCACCTTCAC 58.647 55.000 1.60 0.00 45.36 3.18
642 643 0.325272 GGAGGACCTTCACCTTCACC 59.675 60.000 0.00 0.00 37.93 4.02
643 644 1.056660 GAGGACCTTCACCTTCACCA 58.943 55.000 0.00 0.00 37.93 4.17
644 645 0.765510 AGGACCTTCACCTTCACCAC 59.234 55.000 0.00 0.00 33.55 4.16
645 646 0.765510 GGACCTTCACCTTCACCACT 59.234 55.000 0.00 0.00 0.00 4.00
646 647 1.543429 GGACCTTCACCTTCACCACTG 60.543 57.143 0.00 0.00 0.00 3.66
647 648 0.179018 ACCTTCACCTTCACCACTGC 60.179 55.000 0.00 0.00 0.00 4.40
648 649 0.109342 CCTTCACCTTCACCACTGCT 59.891 55.000 0.00 0.00 0.00 4.24
649 650 1.477558 CCTTCACCTTCACCACTGCTT 60.478 52.381 0.00 0.00 0.00 3.91
650 651 1.605710 CTTCACCTTCACCACTGCTTG 59.394 52.381 0.00 0.00 0.00 4.01
651 652 0.836606 TCACCTTCACCACTGCTTGA 59.163 50.000 0.00 0.00 0.00 3.02
652 653 1.202687 TCACCTTCACCACTGCTTGAG 60.203 52.381 0.00 0.00 0.00 3.02
653 654 1.131638 ACCTTCACCACTGCTTGAGA 58.868 50.000 0.00 0.00 0.00 3.27
654 655 1.701847 ACCTTCACCACTGCTTGAGAT 59.298 47.619 0.00 0.00 0.00 2.75
777 778 2.285220 TGCAAATCGAGCTAATCTTCGC 59.715 45.455 0.00 0.00 0.00 4.70
794 795 5.404096 TCTTCGCATTTCTACGTATTGACA 58.596 37.500 0.00 0.00 0.00 3.58
1044 1076 3.695606 GAGACGTCCAGCCTGCCA 61.696 66.667 13.01 0.00 0.00 4.92
1130 1162 2.496070 GGTTAGGGTTTCAGATTTGGGC 59.504 50.000 0.00 0.00 0.00 5.36
1161 1193 5.359194 TTTGGTTGATTTTGCTGGGTTTA 57.641 34.783 0.00 0.00 0.00 2.01
1207 1239 1.415672 TTCGGCAGGTCCCTTTCAGT 61.416 55.000 0.00 0.00 0.00 3.41
1257 1289 1.934589 CTGGAAACGATGTCGCCATA 58.065 50.000 1.77 0.00 44.43 2.74
1280 1312 0.178068 GAAGCACGGGAAGGCATCTA 59.822 55.000 0.00 0.00 0.00 1.98
1307 1339 3.795150 GCTTGTCGCATTTGAAGGAACAA 60.795 43.478 0.00 0.00 38.92 2.83
1334 1366 3.198853 AGGGAGAAGGTTCTTAGCATGTC 59.801 47.826 0.00 0.00 37.73 3.06
1652 1688 5.258051 ACACTTTTACTCCTGTTTGGAACA 58.742 37.500 0.00 0.00 45.63 3.18
1709 1893 5.449862 GCTGAGTGGTGTTGTAATTTGTCAA 60.450 40.000 0.00 0.00 0.00 3.18
1833 2018 6.942976 AGCTTAGTGCACTAGTTATTTACCA 58.057 36.000 24.79 7.00 45.94 3.25
1889 2074 1.332195 GCTCTTTTTGCAGGAAGGGT 58.668 50.000 11.31 0.00 0.00 4.34
2125 2310 0.854039 TCCAGGAGGAGAGGGTGGTA 60.854 60.000 0.00 0.00 39.61 3.25
2145 2330 5.181748 GGTAGATTTCAGACATCTGCAGTT 58.818 41.667 14.67 1.65 43.46 3.16
2367 2552 6.302269 AGATGAACTTGGAGTTGAAGAATGT 58.698 36.000 0.00 0.00 38.80 2.71
2476 2661 1.741706 CATGGTGAAGAGATGGTGCAC 59.258 52.381 8.80 8.80 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.316205 ACATAAATGAGCATGCATGTGG 57.684 40.909 26.79 3.17 29.91 4.17
3 4 6.569801 GCATCTACATAAATGAGCATGCATGT 60.570 38.462 26.79 20.30 33.40 3.21
4 5 5.800438 GCATCTACATAAATGAGCATGCATG 59.200 40.000 22.70 22.70 0.00 4.06
5 6 5.475564 TGCATCTACATAAATGAGCATGCAT 59.524 36.000 21.98 1.94 36.55 3.96
6 7 4.822896 TGCATCTACATAAATGAGCATGCA 59.177 37.500 21.98 16.37 38.72 3.96
7 8 5.366829 TGCATCTACATAAATGAGCATGC 57.633 39.130 10.51 10.51 0.00 4.06
8 9 5.048991 TGCTGCATCTACATAAATGAGCATG 60.049 40.000 0.00 0.00 34.32 4.06
9 10 5.048921 GTGCTGCATCTACATAAATGAGCAT 60.049 40.000 5.27 0.00 37.83 3.79
10 11 4.274214 GTGCTGCATCTACATAAATGAGCA 59.726 41.667 5.27 0.00 35.57 4.26
11 12 4.274214 TGTGCTGCATCTACATAAATGAGC 59.726 41.667 5.27 0.00 31.98 4.26
12 13 5.996669 TGTGCTGCATCTACATAAATGAG 57.003 39.130 5.27 0.00 0.00 2.90
13 14 6.947644 AATGTGCTGCATCTACATAAATGA 57.052 33.333 5.27 0.00 36.67 2.57
14 15 7.997107 AAAATGTGCTGCATCTACATAAATG 57.003 32.000 5.27 0.00 36.67 2.32
15 16 7.493320 CCAAAAATGTGCTGCATCTACATAAAT 59.507 33.333 5.27 0.00 36.67 1.40
16 17 6.812656 CCAAAAATGTGCTGCATCTACATAAA 59.187 34.615 5.27 0.00 36.67 1.40
17 18 6.071447 ACCAAAAATGTGCTGCATCTACATAA 60.071 34.615 5.27 0.00 36.67 1.90
18 19 5.418524 ACCAAAAATGTGCTGCATCTACATA 59.581 36.000 5.27 0.00 36.67 2.29
19 20 4.221262 ACCAAAAATGTGCTGCATCTACAT 59.779 37.500 5.27 1.14 36.67 2.29
20 21 3.573538 ACCAAAAATGTGCTGCATCTACA 59.426 39.130 5.27 0.00 36.67 2.74
21 22 4.178545 ACCAAAAATGTGCTGCATCTAC 57.821 40.909 5.27 0.00 36.67 2.59
22 23 4.615682 CGAACCAAAAATGTGCTGCATCTA 60.616 41.667 5.27 0.00 36.67 1.98
23 24 3.656559 GAACCAAAAATGTGCTGCATCT 58.343 40.909 5.27 0.00 36.67 2.90
24 25 2.409378 CGAACCAAAAATGTGCTGCATC 59.591 45.455 5.27 0.09 36.67 3.91
25 26 2.224018 ACGAACCAAAAATGTGCTGCAT 60.224 40.909 5.27 0.00 40.03 3.96
26 27 1.135915 ACGAACCAAAAATGTGCTGCA 59.864 42.857 0.00 0.00 0.00 4.41
27 28 1.851658 ACGAACCAAAAATGTGCTGC 58.148 45.000 0.00 0.00 0.00 5.25
28 29 4.856115 AAAACGAACCAAAAATGTGCTG 57.144 36.364 0.00 0.00 0.00 4.41
29 30 4.932200 TCAAAAACGAACCAAAAATGTGCT 59.068 33.333 0.00 0.00 0.00 4.40
30 31 5.209944 TCAAAAACGAACCAAAAATGTGC 57.790 34.783 0.00 0.00 0.00 4.57
45 46 1.598676 GGCGTTCCCTCGTTCAAAAAC 60.599 52.381 0.00 0.00 0.00 2.43
46 47 0.664224 GGCGTTCCCTCGTTCAAAAA 59.336 50.000 0.00 0.00 0.00 1.94
47 48 2.323213 GGCGTTCCCTCGTTCAAAA 58.677 52.632 0.00 0.00 0.00 2.44
48 49 4.052519 GGCGTTCCCTCGTTCAAA 57.947 55.556 0.00 0.00 0.00 2.69
89 90 5.266242 AGGACTAATAAACTTACGTACGCG 58.734 41.667 16.72 3.53 44.93 6.01
90 91 5.393742 CGAGGACTAATAAACTTACGTACGC 59.606 44.000 16.72 0.00 0.00 4.42
91 92 6.478588 ACGAGGACTAATAAACTTACGTACG 58.521 40.000 15.01 15.01 0.00 3.67
92 93 7.750903 ACAACGAGGACTAATAAACTTACGTAC 59.249 37.037 0.00 0.00 0.00 3.67
93 94 7.816640 ACAACGAGGACTAATAAACTTACGTA 58.183 34.615 0.00 0.00 0.00 3.57
94 95 6.681777 ACAACGAGGACTAATAAACTTACGT 58.318 36.000 0.00 0.00 0.00 3.57
95 96 8.673626 TTACAACGAGGACTAATAAACTTACG 57.326 34.615 0.00 0.00 0.00 3.18
98 99 9.367444 CAGATTACAACGAGGACTAATAAACTT 57.633 33.333 0.00 0.00 0.00 2.66
99 100 8.529476 ACAGATTACAACGAGGACTAATAAACT 58.471 33.333 0.00 0.00 0.00 2.66
100 101 8.592998 CACAGATTACAACGAGGACTAATAAAC 58.407 37.037 0.00 0.00 0.00 2.01
101 102 8.308931 ACACAGATTACAACGAGGACTAATAAA 58.691 33.333 0.00 0.00 0.00 1.40
102 103 7.833786 ACACAGATTACAACGAGGACTAATAA 58.166 34.615 0.00 0.00 0.00 1.40
103 104 7.121611 TGACACAGATTACAACGAGGACTAATA 59.878 37.037 0.00 0.00 0.00 0.98
104 105 6.071560 TGACACAGATTACAACGAGGACTAAT 60.072 38.462 0.00 0.00 0.00 1.73
105 106 5.242171 TGACACAGATTACAACGAGGACTAA 59.758 40.000 0.00 0.00 0.00 2.24
106 107 4.763279 TGACACAGATTACAACGAGGACTA 59.237 41.667 0.00 0.00 0.00 2.59
107 108 3.572682 TGACACAGATTACAACGAGGACT 59.427 43.478 0.00 0.00 0.00 3.85
108 109 3.909430 TGACACAGATTACAACGAGGAC 58.091 45.455 0.00 0.00 0.00 3.85
109 110 4.594123 TTGACACAGATTACAACGAGGA 57.406 40.909 0.00 0.00 0.00 3.71
110 111 5.862924 ATTTGACACAGATTACAACGAGG 57.137 39.130 0.00 0.00 0.00 4.63
111 112 7.855409 TCAAAATTTGACACAGATTACAACGAG 59.145 33.333 4.03 0.00 34.08 4.18
112 113 7.698628 TCAAAATTTGACACAGATTACAACGA 58.301 30.769 4.03 0.00 34.08 3.85
113 114 7.906611 TCAAAATTTGACACAGATTACAACG 57.093 32.000 4.03 0.00 34.08 4.10
114 115 9.462174 TGATCAAAATTTGACACAGATTACAAC 57.538 29.630 10.91 0.00 43.48 3.32
203 204 9.967346 TCAACAAAAATTATAACGTTGGATTCA 57.033 25.926 11.99 0.00 35.57 2.57
205 206 9.751542 TGTCAACAAAAATTATAACGTTGGATT 57.248 25.926 11.99 5.49 35.57 3.01
206 207 9.921637 ATGTCAACAAAAATTATAACGTTGGAT 57.078 25.926 11.99 0.00 35.57 3.41
207 208 9.186323 CATGTCAACAAAAATTATAACGTTGGA 57.814 29.630 11.99 0.00 35.57 3.53
208 209 7.949428 GCATGTCAACAAAAATTATAACGTTGG 59.051 33.333 11.99 0.60 35.57 3.77
209 210 8.483218 TGCATGTCAACAAAAATTATAACGTTG 58.517 29.630 11.99 0.00 36.05 4.10
210 211 8.484008 GTGCATGTCAACAAAAATTATAACGTT 58.516 29.630 5.88 5.88 0.00 3.99
211 212 7.149047 CGTGCATGTCAACAAAAATTATAACGT 60.149 33.333 0.00 0.00 0.00 3.99
212 213 7.060059 TCGTGCATGTCAACAAAAATTATAACG 59.940 33.333 5.68 0.00 0.00 3.18
213 214 8.221801 TCGTGCATGTCAACAAAAATTATAAC 57.778 30.769 5.68 0.00 0.00 1.89
214 215 8.978564 ATCGTGCATGTCAACAAAAATTATAA 57.021 26.923 5.68 0.00 0.00 0.98
215 216 8.239998 TGATCGTGCATGTCAACAAAAATTATA 58.760 29.630 5.68 0.00 0.00 0.98
216 217 7.089538 TGATCGTGCATGTCAACAAAAATTAT 58.910 30.769 5.68 0.00 0.00 1.28
217 218 6.442112 TGATCGTGCATGTCAACAAAAATTA 58.558 32.000 5.68 0.00 0.00 1.40
218 219 5.288015 TGATCGTGCATGTCAACAAAAATT 58.712 33.333 5.68 0.00 0.00 1.82
219 220 4.869215 TGATCGTGCATGTCAACAAAAAT 58.131 34.783 5.68 0.00 0.00 1.82
220 221 4.298744 TGATCGTGCATGTCAACAAAAA 57.701 36.364 5.68 0.00 0.00 1.94
221 222 3.978718 TGATCGTGCATGTCAACAAAA 57.021 38.095 5.68 0.00 0.00 2.44
222 223 4.502171 AATGATCGTGCATGTCAACAAA 57.498 36.364 5.68 0.00 0.00 2.83
223 224 4.502171 AAATGATCGTGCATGTCAACAA 57.498 36.364 5.68 0.00 0.00 2.83
224 225 4.228317 CAAAATGATCGTGCATGTCAACA 58.772 39.130 5.68 3.09 0.00 3.33
225 226 4.229096 ACAAAATGATCGTGCATGTCAAC 58.771 39.130 5.68 0.00 0.00 3.18
226 227 4.023365 TGACAAAATGATCGTGCATGTCAA 60.023 37.500 20.04 9.94 30.52 3.18
227 228 3.501445 TGACAAAATGATCGTGCATGTCA 59.499 39.130 19.10 19.10 30.79 3.58
228 229 4.082274 TGACAAAATGATCGTGCATGTC 57.918 40.909 15.76 15.76 0.00 3.06
229 230 3.503363 ACTGACAAAATGATCGTGCATGT 59.497 39.130 5.68 0.00 0.00 3.21
230 231 4.087510 ACTGACAAAATGATCGTGCATG 57.912 40.909 0.00 0.00 0.00 4.06
231 232 4.771590 AACTGACAAAATGATCGTGCAT 57.228 36.364 0.00 0.00 0.00 3.96
232 233 5.681337 TTAACTGACAAAATGATCGTGCA 57.319 34.783 0.00 0.00 0.00 4.57
233 234 7.566858 AAATTAACTGACAAAATGATCGTGC 57.433 32.000 0.00 0.00 0.00 5.34
234 235 9.782028 CAAAAATTAACTGACAAAATGATCGTG 57.218 29.630 0.00 0.00 0.00 4.35
235 236 9.743057 TCAAAAATTAACTGACAAAATGATCGT 57.257 25.926 0.00 0.00 0.00 3.73
263 264 9.616156 TCCCTGTATAATTCGTGCTAAATTTTA 57.384 29.630 0.00 0.00 0.00 1.52
264 265 8.514330 TCCCTGTATAATTCGTGCTAAATTTT 57.486 30.769 0.00 0.00 0.00 1.82
265 266 8.403236 GTTCCCTGTATAATTCGTGCTAAATTT 58.597 33.333 0.00 0.00 0.00 1.82
266 267 7.773690 AGTTCCCTGTATAATTCGTGCTAAATT 59.226 33.333 0.00 0.00 0.00 1.82
267 268 7.280356 AGTTCCCTGTATAATTCGTGCTAAAT 58.720 34.615 0.00 0.00 0.00 1.40
268 269 6.646267 AGTTCCCTGTATAATTCGTGCTAAA 58.354 36.000 0.00 0.00 0.00 1.85
269 270 6.229936 AGTTCCCTGTATAATTCGTGCTAA 57.770 37.500 0.00 0.00 0.00 3.09
270 271 5.864418 AGTTCCCTGTATAATTCGTGCTA 57.136 39.130 0.00 0.00 0.00 3.49
271 272 4.755266 AGTTCCCTGTATAATTCGTGCT 57.245 40.909 0.00 0.00 0.00 4.40
272 273 8.597662 TTATTAGTTCCCTGTATAATTCGTGC 57.402 34.615 0.00 0.00 0.00 5.34
274 275 9.252962 CGTTTATTAGTTCCCTGTATAATTCGT 57.747 33.333 0.00 0.00 0.00 3.85
275 276 9.467258 TCGTTTATTAGTTCCCTGTATAATTCG 57.533 33.333 0.00 0.00 0.00 3.34
277 278 9.774413 CCTCGTTTATTAGTTCCCTGTATAATT 57.226 33.333 0.00 0.00 0.00 1.40
278 279 9.151177 TCCTCGTTTATTAGTTCCCTGTATAAT 57.849 33.333 0.00 0.00 0.00 1.28
279 280 8.416329 GTCCTCGTTTATTAGTTCCCTGTATAA 58.584 37.037 0.00 0.00 0.00 0.98
280 281 7.255242 CGTCCTCGTTTATTAGTTCCCTGTATA 60.255 40.741 0.00 0.00 0.00 1.47
281 282 6.460676 CGTCCTCGTTTATTAGTTCCCTGTAT 60.461 42.308 0.00 0.00 0.00 2.29
282 283 5.163622 CGTCCTCGTTTATTAGTTCCCTGTA 60.164 44.000 0.00 0.00 0.00 2.74
283 284 4.381292 CGTCCTCGTTTATTAGTTCCCTGT 60.381 45.833 0.00 0.00 0.00 4.00
284 285 4.110482 CGTCCTCGTTTATTAGTTCCCTG 58.890 47.826 0.00 0.00 0.00 4.45
285 286 3.131755 CCGTCCTCGTTTATTAGTTCCCT 59.868 47.826 0.00 0.00 35.01 4.20
286 287 3.131046 TCCGTCCTCGTTTATTAGTTCCC 59.869 47.826 0.00 0.00 35.01 3.97
287 288 4.357996 CTCCGTCCTCGTTTATTAGTTCC 58.642 47.826 0.00 0.00 35.01 3.62
288 289 4.142293 ACCTCCGTCCTCGTTTATTAGTTC 60.142 45.833 0.00 0.00 35.01 3.01
289 290 3.766051 ACCTCCGTCCTCGTTTATTAGTT 59.234 43.478 0.00 0.00 35.01 2.24
290 291 3.359950 ACCTCCGTCCTCGTTTATTAGT 58.640 45.455 0.00 0.00 35.01 2.24
291 292 4.578105 ACTACCTCCGTCCTCGTTTATTAG 59.422 45.833 0.00 0.00 35.01 1.73
292 293 4.526970 ACTACCTCCGTCCTCGTTTATTA 58.473 43.478 0.00 0.00 35.01 0.98
293 294 3.359950 ACTACCTCCGTCCTCGTTTATT 58.640 45.455 0.00 0.00 35.01 1.40
294 295 3.010200 ACTACCTCCGTCCTCGTTTAT 57.990 47.619 0.00 0.00 35.01 1.40
295 296 2.496899 ACTACCTCCGTCCTCGTTTA 57.503 50.000 0.00 0.00 35.01 2.01
296 297 2.087646 GTACTACCTCCGTCCTCGTTT 58.912 52.381 0.00 0.00 35.01 3.60
297 298 1.743996 GTACTACCTCCGTCCTCGTT 58.256 55.000 0.00 0.00 35.01 3.85
298 299 0.460987 CGTACTACCTCCGTCCTCGT 60.461 60.000 0.00 0.00 35.01 4.18
299 300 0.179100 TCGTACTACCTCCGTCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
300 301 1.294857 GTCGTACTACCTCCGTCCTC 58.705 60.000 0.00 0.00 0.00 3.71
301 302 0.107459 GGTCGTACTACCTCCGTCCT 60.107 60.000 9.28 0.00 36.53 3.85
302 303 1.098129 GGGTCGTACTACCTCCGTCC 61.098 65.000 15.57 0.00 39.65 4.79
303 304 0.392998 TGGGTCGTACTACCTCCGTC 60.393 60.000 15.57 0.32 39.65 4.79
304 305 0.038166 TTGGGTCGTACTACCTCCGT 59.962 55.000 15.57 0.00 39.65 4.69
305 306 1.176527 TTTGGGTCGTACTACCTCCG 58.823 55.000 15.57 0.00 39.65 4.63
306 307 3.683365 TTTTTGGGTCGTACTACCTCC 57.317 47.619 15.57 1.68 39.65 4.30
323 324 7.544217 AGCGAGCGGTGAAATAATTAAATTTTT 59.456 29.630 0.00 0.00 0.00 1.94
324 325 7.033185 AGCGAGCGGTGAAATAATTAAATTTT 58.967 30.769 0.00 0.00 0.00 1.82
325 326 6.560711 AGCGAGCGGTGAAATAATTAAATTT 58.439 32.000 0.00 0.00 0.00 1.82
326 327 6.131544 AGCGAGCGGTGAAATAATTAAATT 57.868 33.333 0.00 0.00 0.00 1.82
327 328 5.558273 CGAGCGAGCGGTGAAATAATTAAAT 60.558 40.000 0.00 0.00 0.00 1.40
328 329 4.260051 CGAGCGAGCGGTGAAATAATTAAA 60.260 41.667 0.00 0.00 0.00 1.52
329 330 3.244345 CGAGCGAGCGGTGAAATAATTAA 59.756 43.478 0.00 0.00 0.00 1.40
330 331 2.792674 CGAGCGAGCGGTGAAATAATTA 59.207 45.455 0.00 0.00 0.00 1.40
331 332 1.593006 CGAGCGAGCGGTGAAATAATT 59.407 47.619 0.00 0.00 0.00 1.40
332 333 1.209128 CGAGCGAGCGGTGAAATAAT 58.791 50.000 0.00 0.00 0.00 1.28
333 334 1.418342 GCGAGCGAGCGGTGAAATAA 61.418 55.000 0.00 0.00 0.00 1.40
334 335 1.876714 GCGAGCGAGCGGTGAAATA 60.877 57.895 0.00 0.00 0.00 1.40
335 336 3.188786 GCGAGCGAGCGGTGAAAT 61.189 61.111 0.00 0.00 0.00 2.17
336 337 4.357947 AGCGAGCGAGCGGTGAAA 62.358 61.111 0.00 0.00 40.85 2.69
337 338 4.778415 GAGCGAGCGAGCGGTGAA 62.778 66.667 6.78 0.00 42.62 3.18
364 365 4.805231 TACCGATGGCCGTGCGTG 62.805 66.667 0.00 3.33 36.31 5.34
365 366 4.807039 GTACCGATGGCCGTGCGT 62.807 66.667 0.00 0.00 36.31 5.24
367 368 4.460683 TGGTACCGATGGCCGTGC 62.461 66.667 0.00 0.00 36.31 5.34
368 369 1.669049 TACTGGTACCGATGGCCGTG 61.669 60.000 0.00 0.00 36.31 4.94
369 370 1.380246 TACTGGTACCGATGGCCGT 60.380 57.895 7.57 0.00 36.31 5.68
370 371 1.066918 GTACTGGTACCGATGGCCG 59.933 63.158 7.57 0.00 38.18 6.13
371 372 1.066918 CGTACTGGTACCGATGGCC 59.933 63.158 7.57 0.00 32.61 5.36
372 373 1.590792 GCGTACTGGTACCGATGGC 60.591 63.158 7.57 3.22 32.61 4.40
373 374 1.298863 CGCGTACTGGTACCGATGG 60.299 63.158 7.57 0.00 34.19 3.51
374 375 1.942712 GCGCGTACTGGTACCGATG 60.943 63.158 8.43 2.56 34.19 3.84
375 376 2.410469 GCGCGTACTGGTACCGAT 59.590 61.111 8.43 0.00 34.19 4.18
376 377 3.814268 GGCGCGTACTGGTACCGA 61.814 66.667 8.43 0.00 34.19 4.69
378 379 4.120331 ACGGCGCGTACTGGTACC 62.120 66.667 6.90 4.43 38.73 3.34
379 380 2.877582 CACGGCGCGTACTGGTAC 60.878 66.667 6.90 1.18 38.32 3.34
380 381 4.118995 CCACGGCGCGTACTGGTA 62.119 66.667 6.90 0.00 38.32 3.25
383 384 4.415332 AGTCCACGGCGCGTACTG 62.415 66.667 6.90 0.00 38.32 2.74
384 385 4.112341 GAGTCCACGGCGCGTACT 62.112 66.667 6.90 7.66 38.32 2.73
390 391 4.180946 CTCCTCGAGTCCACGGCG 62.181 72.222 12.31 4.80 0.00 6.46
391 392 3.827898 CCTCCTCGAGTCCACGGC 61.828 72.222 12.31 0.00 0.00 5.68
392 393 3.141488 CCCTCCTCGAGTCCACGG 61.141 72.222 12.31 3.91 0.00 4.94
393 394 3.827898 GCCCTCCTCGAGTCCACG 61.828 72.222 12.31 0.00 0.00 4.94
394 395 3.462678 GGCCCTCCTCGAGTCCAC 61.463 72.222 12.31 0.00 0.00 4.02
413 414 3.825611 ATGCAAATCACGGCCGGC 61.826 61.111 31.76 21.18 0.00 6.13
414 415 2.102749 CATGCAAATCACGGCCGG 59.897 61.111 31.76 18.67 0.00 6.13
415 416 2.580326 GCATGCAAATCACGGCCG 60.580 61.111 26.86 26.86 0.00 6.13
416 417 1.142314 ATGCATGCAAATCACGGCC 59.858 52.632 26.68 0.00 0.00 6.13
417 418 1.149361 CCATGCATGCAAATCACGGC 61.149 55.000 26.68 0.00 0.00 5.68
418 419 1.149361 GCCATGCATGCAAATCACGG 61.149 55.000 26.68 17.91 0.00 4.94
419 420 0.458716 TGCCATGCATGCAAATCACG 60.459 50.000 26.68 9.34 35.40 4.35
420 421 1.728068 TTGCCATGCATGCAAATCAC 58.272 45.000 26.68 13.02 45.11 3.06
425 426 0.944788 CAACGTTGCCATGCATGCAA 60.945 50.000 26.68 22.91 45.83 4.08
426 427 1.373121 CAACGTTGCCATGCATGCA 60.373 52.632 25.04 25.04 38.76 3.96
427 428 2.095847 CCAACGTTGCCATGCATGC 61.096 57.895 22.93 11.82 38.76 4.06
428 429 0.733566 GACCAACGTTGCCATGCATG 60.734 55.000 22.93 20.19 38.76 4.06
429 430 1.586028 GACCAACGTTGCCATGCAT 59.414 52.632 22.93 0.00 38.76 3.96
430 431 2.902419 CGACCAACGTTGCCATGCA 61.902 57.895 22.93 0.00 36.47 3.96
431 432 2.126888 CGACCAACGTTGCCATGC 60.127 61.111 22.93 8.15 37.22 4.06
441 442 1.202817 ACAAACCAAACCACGACCAAC 59.797 47.619 0.00 0.00 0.00 3.77
442 443 1.202582 CACAAACCAAACCACGACCAA 59.797 47.619 0.00 0.00 0.00 3.67
443 444 0.811915 CACAAACCAAACCACGACCA 59.188 50.000 0.00 0.00 0.00 4.02
444 445 0.812549 ACACAAACCAAACCACGACC 59.187 50.000 0.00 0.00 0.00 4.79
445 446 1.468395 CCACACAAACCAAACCACGAC 60.468 52.381 0.00 0.00 0.00 4.34
446 447 0.811915 CCACACAAACCAAACCACGA 59.188 50.000 0.00 0.00 0.00 4.35
447 448 0.811915 TCCACACAAACCAAACCACG 59.188 50.000 0.00 0.00 0.00 4.94
448 449 2.997303 GTTTCCACACAAACCAAACCAC 59.003 45.455 0.00 0.00 31.10 4.16
449 450 3.320673 GTTTCCACACAAACCAAACCA 57.679 42.857 0.00 0.00 31.10 3.67
456 457 0.382873 GGGTCGGTTTCCACACAAAC 59.617 55.000 0.00 0.00 35.79 2.93
457 458 0.752376 GGGGTCGGTTTCCACACAAA 60.752 55.000 0.00 0.00 0.00 2.83
458 459 1.152922 GGGGTCGGTTTCCACACAA 60.153 57.895 0.00 0.00 0.00 3.33
459 460 2.511900 GGGGTCGGTTTCCACACA 59.488 61.111 0.00 0.00 0.00 3.72
460 461 2.667199 CGGGGTCGGTTTCCACAC 60.667 66.667 0.00 0.00 0.00 3.82
461 462 3.162858 ACGGGGTCGGTTTCCACA 61.163 61.111 0.00 0.00 41.39 4.17
462 463 2.667199 CACGGGGTCGGTTTCCAC 60.667 66.667 0.00 0.00 41.39 4.02
463 464 3.162858 ACACGGGGTCGGTTTCCA 61.163 61.111 0.00 0.00 41.39 3.53
464 465 2.667199 CACACGGGGTCGGTTTCC 60.667 66.667 0.00 0.00 41.39 3.13
465 466 2.109593 ACACACGGGGTCGGTTTC 59.890 61.111 0.00 0.00 41.39 2.78
466 467 2.203098 CACACACGGGGTCGGTTT 60.203 61.111 0.00 0.00 41.39 3.27
467 468 3.033919 AACACACACGGGGTCGGTT 62.034 57.895 0.00 0.00 41.39 4.44
468 469 3.472726 AACACACACGGGGTCGGT 61.473 61.111 0.00 0.00 41.39 4.69
469 470 2.970324 CAACACACACGGGGTCGG 60.970 66.667 0.00 0.00 41.39 4.79
470 471 3.645975 GCAACACACACGGGGTCG 61.646 66.667 0.00 0.00 43.02 4.79
471 472 3.645975 CGCAACACACACGGGGTC 61.646 66.667 0.00 0.00 0.00 4.46
474 475 2.663520 TAGCGCAACACACACGGG 60.664 61.111 11.47 0.00 0.00 5.28
475 476 1.663388 TCTAGCGCAACACACACGG 60.663 57.895 11.47 0.00 0.00 4.94
476 477 0.939577 AGTCTAGCGCAACACACACG 60.940 55.000 11.47 0.00 0.00 4.49
477 478 0.508641 CAGTCTAGCGCAACACACAC 59.491 55.000 11.47 0.00 0.00 3.82
478 479 0.599991 CCAGTCTAGCGCAACACACA 60.600 55.000 11.47 0.00 0.00 3.72
479 480 1.901650 GCCAGTCTAGCGCAACACAC 61.902 60.000 11.47 0.00 0.00 3.82
480 481 1.667830 GCCAGTCTAGCGCAACACA 60.668 57.895 11.47 0.00 0.00 3.72
481 482 2.391389 GGCCAGTCTAGCGCAACAC 61.391 63.158 11.47 1.73 0.00 3.32
482 483 2.047274 GGCCAGTCTAGCGCAACA 60.047 61.111 11.47 0.00 0.00 3.33
483 484 1.026718 ATTGGCCAGTCTAGCGCAAC 61.027 55.000 11.47 4.62 0.00 4.17
484 485 0.744414 GATTGGCCAGTCTAGCGCAA 60.744 55.000 20.38 0.00 0.00 4.85
485 486 1.153369 GATTGGCCAGTCTAGCGCA 60.153 57.895 20.38 0.00 0.00 6.09
486 487 2.240500 CGATTGGCCAGTCTAGCGC 61.241 63.158 24.13 0.00 0.00 5.92
487 488 2.240500 GCGATTGGCCAGTCTAGCG 61.241 63.158 24.13 16.72 34.80 4.26
488 489 0.533755 ATGCGATTGGCCAGTCTAGC 60.534 55.000 24.13 20.59 42.61 3.42
489 490 1.224075 CATGCGATTGGCCAGTCTAG 58.776 55.000 24.13 12.01 42.61 2.43
490 491 0.815213 GCATGCGATTGGCCAGTCTA 60.815 55.000 24.13 14.27 42.61 2.59
491 492 2.117156 GCATGCGATTGGCCAGTCT 61.117 57.895 24.13 4.71 42.61 3.24
492 493 1.731433 ATGCATGCGATTGGCCAGTC 61.731 55.000 17.97 17.97 42.61 3.51
493 494 1.755395 ATGCATGCGATTGGCCAGT 60.755 52.632 14.09 1.42 42.61 4.00
494 495 1.299850 CATGCATGCGATTGGCCAG 60.300 57.895 14.93 0.00 42.61 4.85
495 496 2.809010 CATGCATGCGATTGGCCA 59.191 55.556 14.93 0.00 42.61 5.36
496 497 2.660552 GCATGCATGCGATTGGCC 60.661 61.111 33.99 8.38 44.67 5.36
506 507 2.506231 TCCCAAAAATCCATGCATGCAT 59.494 40.909 27.46 27.46 37.08 3.96
507 508 1.907255 TCCCAAAAATCCATGCATGCA 59.093 42.857 25.04 25.04 0.00 3.96
508 509 2.695127 TCCCAAAAATCCATGCATGC 57.305 45.000 21.69 11.82 0.00 4.06
509 510 3.068448 TCGATCCCAAAAATCCATGCATG 59.932 43.478 20.19 20.19 0.00 4.06
510 511 3.298619 TCGATCCCAAAAATCCATGCAT 58.701 40.909 0.00 0.00 0.00 3.96
511 512 2.732763 TCGATCCCAAAAATCCATGCA 58.267 42.857 0.00 0.00 0.00 3.96
512 513 3.305608 GGATCGATCCCAAAAATCCATGC 60.306 47.826 30.80 3.14 41.20 4.06
513 514 4.510038 GGATCGATCCCAAAAATCCATG 57.490 45.455 30.80 0.00 41.20 3.66
524 525 4.502164 CCGGAAAGGAAGGATCGATCCC 62.502 59.091 35.53 23.21 45.37 3.85
525 526 1.270358 CCGGAAAGGAAGGATCGATCC 60.270 57.143 33.14 33.14 44.88 3.36
526 527 1.270358 CCCGGAAAGGAAGGATCGATC 60.270 57.143 17.36 17.36 45.00 3.69
527 528 0.759346 CCCGGAAAGGAAGGATCGAT 59.241 55.000 0.73 0.00 45.00 3.59
528 529 0.324923 TCCCGGAAAGGAAGGATCGA 60.325 55.000 0.73 0.00 45.00 3.59
529 530 0.539986 TTCCCGGAAAGGAAGGATCG 59.460 55.000 0.73 0.00 41.08 3.69
530 531 1.408405 GGTTCCCGGAAAGGAAGGATC 60.408 57.143 0.73 0.00 46.55 3.36
531 532 0.624254 GGTTCCCGGAAAGGAAGGAT 59.376 55.000 0.73 0.00 46.55 3.24
532 533 0.475048 AGGTTCCCGGAAAGGAAGGA 60.475 55.000 0.73 0.00 46.55 3.36
533 534 0.322546 CAGGTTCCCGGAAAGGAAGG 60.323 60.000 0.73 0.00 46.55 3.46
534 535 0.960861 GCAGGTTCCCGGAAAGGAAG 60.961 60.000 0.73 0.00 46.55 3.46
535 536 1.074248 GCAGGTTCCCGGAAAGGAA 59.926 57.895 0.73 0.00 43.77 3.36
536 537 2.754375 GCAGGTTCCCGGAAAGGA 59.246 61.111 0.73 0.00 45.00 3.36
537 538 2.746277 CGCAGGTTCCCGGAAAGG 60.746 66.667 0.73 0.00 40.63 3.11
538 539 2.032071 ACGCAGGTTCCCGGAAAG 59.968 61.111 0.73 0.00 0.00 2.62
539 540 2.031465 GACGCAGGTTCCCGGAAA 59.969 61.111 0.73 0.00 0.00 3.13
540 541 4.011517 GGACGCAGGTTCCCGGAA 62.012 66.667 0.73 0.00 0.00 4.30
542 543 3.952628 GAAGGACGCAGGTTCCCGG 62.953 68.421 0.00 0.00 0.00 5.73
543 544 2.434359 GAAGGACGCAGGTTCCCG 60.434 66.667 0.00 0.00 0.00 5.14
544 545 2.046217 GGAAGGACGCAGGTTCCC 60.046 66.667 0.00 0.00 34.72 3.97
545 546 2.046217 GGGAAGGACGCAGGTTCC 60.046 66.667 0.00 0.00 39.31 3.62
546 547 0.250770 AAAGGGAAGGACGCAGGTTC 60.251 55.000 0.00 0.00 0.00 3.62
547 548 0.185175 AAAAGGGAAGGACGCAGGTT 59.815 50.000 0.00 0.00 0.00 3.50
548 549 0.250770 GAAAAGGGAAGGACGCAGGT 60.251 55.000 0.00 0.00 0.00 4.00
549 550 1.298859 CGAAAAGGGAAGGACGCAGG 61.299 60.000 0.00 0.00 0.00 4.85
550 551 1.298859 CCGAAAAGGGAAGGACGCAG 61.299 60.000 0.00 0.00 35.97 5.18
551 552 1.302192 CCGAAAAGGGAAGGACGCA 60.302 57.895 0.00 0.00 35.97 5.24
552 553 3.574780 CCGAAAAGGGAAGGACGC 58.425 61.111 0.00 0.00 35.97 5.19
561 562 3.317993 ACTTGTCAAACATCCCGAAAAGG 59.682 43.478 0.00 0.00 40.63 3.11
562 563 4.568152 ACTTGTCAAACATCCCGAAAAG 57.432 40.909 0.00 0.00 31.47 2.27
563 564 4.517453 CCTACTTGTCAAACATCCCGAAAA 59.483 41.667 0.00 0.00 0.00 2.29
564 565 4.069304 CCTACTTGTCAAACATCCCGAAA 58.931 43.478 0.00 0.00 0.00 3.46
565 566 3.325425 TCCTACTTGTCAAACATCCCGAA 59.675 43.478 0.00 0.00 0.00 4.30
566 567 2.901192 TCCTACTTGTCAAACATCCCGA 59.099 45.455 0.00 0.00 0.00 5.14
567 568 3.262420 CTCCTACTTGTCAAACATCCCG 58.738 50.000 0.00 0.00 0.00 5.14
568 569 4.287766 ACTCCTACTTGTCAAACATCCC 57.712 45.455 0.00 0.00 0.00 3.85
569 570 6.407202 ACATACTCCTACTTGTCAAACATCC 58.593 40.000 0.00 0.00 0.00 3.51
570 571 7.907214 AACATACTCCTACTTGTCAAACATC 57.093 36.000 0.00 0.00 0.00 3.06
571 572 7.936847 TCAAACATACTCCTACTTGTCAAACAT 59.063 33.333 0.00 0.00 0.00 2.71
572 573 7.225931 GTCAAACATACTCCTACTTGTCAAACA 59.774 37.037 0.00 0.00 0.00 2.83
573 574 7.441458 AGTCAAACATACTCCTACTTGTCAAAC 59.559 37.037 0.00 0.00 0.00 2.93
574 575 7.506114 AGTCAAACATACTCCTACTTGTCAAA 58.494 34.615 0.00 0.00 0.00 2.69
575 576 7.062749 AGTCAAACATACTCCTACTTGTCAA 57.937 36.000 0.00 0.00 0.00 3.18
576 577 6.665992 AGTCAAACATACTCCTACTTGTCA 57.334 37.500 0.00 0.00 0.00 3.58
577 578 7.152645 TCAAGTCAAACATACTCCTACTTGTC 58.847 38.462 10.93 0.00 41.75 3.18
578 579 7.062749 TCAAGTCAAACATACTCCTACTTGT 57.937 36.000 10.93 0.00 41.75 3.16
579 580 7.441157 TGTTCAAGTCAAACATACTCCTACTTG 59.559 37.037 0.00 0.00 42.18 3.16
580 581 7.506114 TGTTCAAGTCAAACATACTCCTACTT 58.494 34.615 0.00 0.00 31.90 2.24
581 582 7.062749 TGTTCAAGTCAAACATACTCCTACT 57.937 36.000 0.00 0.00 31.90 2.57
582 583 6.929606 ACTGTTCAAGTCAAACATACTCCTAC 59.070 38.462 0.00 0.00 36.14 3.18
583 584 7.062749 ACTGTTCAAGTCAAACATACTCCTA 57.937 36.000 0.00 0.00 36.14 2.94
584 585 5.930135 ACTGTTCAAGTCAAACATACTCCT 58.070 37.500 0.00 0.00 36.14 3.69
585 586 6.260050 TGAACTGTTCAAGTCAAACATACTCC 59.740 38.462 20.14 0.00 38.56 3.85
586 587 7.246674 TGAACTGTTCAAGTCAAACATACTC 57.753 36.000 20.14 0.00 38.56 2.59
587 588 7.307396 CGATGAACTGTTCAAGTCAAACATACT 60.307 37.037 25.26 5.80 43.95 2.12
588 589 6.792250 CGATGAACTGTTCAAGTCAAACATAC 59.208 38.462 25.26 6.32 43.95 2.39
589 590 6.704050 TCGATGAACTGTTCAAGTCAAACATA 59.296 34.615 25.26 0.00 43.95 2.29
590 591 5.527214 TCGATGAACTGTTCAAGTCAAACAT 59.473 36.000 25.26 7.21 43.95 2.71
591 592 4.873259 TCGATGAACTGTTCAAGTCAAACA 59.127 37.500 25.26 1.47 43.95 2.83
592 593 5.403897 TCGATGAACTGTTCAAGTCAAAC 57.596 39.130 25.26 10.77 43.95 2.93
593 594 4.511454 CCTCGATGAACTGTTCAAGTCAAA 59.489 41.667 25.26 10.47 43.95 2.69
594 595 4.058124 CCTCGATGAACTGTTCAAGTCAA 58.942 43.478 25.26 6.03 43.95 3.18
595 596 3.320826 TCCTCGATGAACTGTTCAAGTCA 59.679 43.478 25.26 10.15 43.95 3.41
596 597 3.914312 TCCTCGATGAACTGTTCAAGTC 58.086 45.455 25.26 18.02 43.95 3.01
597 598 3.322254 ACTCCTCGATGAACTGTTCAAGT 59.678 43.478 25.26 19.19 43.95 3.16
598 599 3.919216 ACTCCTCGATGAACTGTTCAAG 58.081 45.455 25.26 20.91 43.95 3.02
599 600 3.611766 CGACTCCTCGATGAACTGTTCAA 60.612 47.826 25.26 9.90 43.95 2.69
600 601 2.095212 CGACTCCTCGATGAACTGTTCA 60.095 50.000 23.94 23.94 43.06 3.18
601 602 2.161808 TCGACTCCTCGATGAACTGTTC 59.838 50.000 13.49 13.49 44.14 3.18
602 603 2.160205 TCGACTCCTCGATGAACTGTT 58.840 47.619 0.00 0.00 44.14 3.16
603 604 1.822506 TCGACTCCTCGATGAACTGT 58.177 50.000 0.00 0.00 44.14 3.55
611 612 1.221293 GTCCTCCTCGACTCCTCGA 59.779 63.158 0.00 0.00 46.85 4.04
612 613 1.820481 GGTCCTCCTCGACTCCTCG 60.820 68.421 0.00 0.00 41.65 4.63
613 614 0.033894 AAGGTCCTCCTCGACTCCTC 60.034 60.000 0.00 0.00 44.35 3.71
614 615 0.033894 GAAGGTCCTCCTCGACTCCT 60.034 60.000 0.00 0.00 44.35 3.69
615 616 0.323542 TGAAGGTCCTCCTCGACTCC 60.324 60.000 0.00 0.00 44.35 3.85
616 617 0.812549 GTGAAGGTCCTCCTCGACTC 59.187 60.000 0.00 0.00 44.35 3.36
617 618 0.612453 GGTGAAGGTCCTCCTCGACT 60.612 60.000 0.00 0.00 44.35 4.18
618 619 0.612453 AGGTGAAGGTCCTCCTCGAC 60.612 60.000 0.00 0.00 44.35 4.20
619 620 0.114560 AAGGTGAAGGTCCTCCTCGA 59.885 55.000 0.00 0.00 44.35 4.04
620 621 0.533032 GAAGGTGAAGGTCCTCCTCG 59.467 60.000 0.00 0.00 44.35 4.63
621 622 1.276705 GTGAAGGTGAAGGTCCTCCTC 59.723 57.143 0.00 0.00 44.35 3.71
623 624 0.325272 GGTGAAGGTGAAGGTCCTCC 59.675 60.000 0.00 0.00 33.76 4.30
624 625 1.056660 TGGTGAAGGTGAAGGTCCTC 58.943 55.000 0.00 0.00 33.76 3.71
625 626 0.765510 GTGGTGAAGGTGAAGGTCCT 59.234 55.000 0.00 0.00 36.81 3.85
626 627 0.765510 AGTGGTGAAGGTGAAGGTCC 59.234 55.000 0.00 0.00 0.00 4.46
627 628 1.884235 CAGTGGTGAAGGTGAAGGTC 58.116 55.000 0.00 0.00 0.00 3.85
628 629 0.179018 GCAGTGGTGAAGGTGAAGGT 60.179 55.000 0.00 0.00 0.00 3.50
629 630 0.109342 AGCAGTGGTGAAGGTGAAGG 59.891 55.000 0.00 0.00 0.00 3.46
630 631 1.605710 CAAGCAGTGGTGAAGGTGAAG 59.394 52.381 0.00 0.00 0.00 3.02
631 632 1.211703 TCAAGCAGTGGTGAAGGTGAA 59.788 47.619 0.00 0.00 0.00 3.18
632 633 0.836606 TCAAGCAGTGGTGAAGGTGA 59.163 50.000 0.00 0.00 0.00 4.02
633 634 1.202687 TCTCAAGCAGTGGTGAAGGTG 60.203 52.381 0.00 0.00 0.00 4.00
634 635 1.131638 TCTCAAGCAGTGGTGAAGGT 58.868 50.000 0.00 0.00 0.00 3.50
635 636 2.486472 ATCTCAAGCAGTGGTGAAGG 57.514 50.000 0.00 0.00 0.00 3.46
636 637 4.159321 TCTCTATCTCAAGCAGTGGTGAAG 59.841 45.833 0.00 0.00 0.00 3.02
637 638 4.089361 TCTCTATCTCAAGCAGTGGTGAA 58.911 43.478 0.00 0.00 0.00 3.18
638 639 3.701664 TCTCTATCTCAAGCAGTGGTGA 58.298 45.455 0.00 0.00 0.00 4.02
639 640 4.669206 ATCTCTATCTCAAGCAGTGGTG 57.331 45.455 0.00 0.00 0.00 4.17
640 641 6.992664 ATTATCTCTATCTCAAGCAGTGGT 57.007 37.500 0.00 0.00 0.00 4.16
641 642 8.363390 TGTAATTATCTCTATCTCAAGCAGTGG 58.637 37.037 0.00 0.00 0.00 4.00
642 643 9.190858 GTGTAATTATCTCTATCTCAAGCAGTG 57.809 37.037 0.00 0.00 0.00 3.66
643 644 8.079203 CGTGTAATTATCTCTATCTCAAGCAGT 58.921 37.037 0.00 0.00 0.00 4.40
644 645 8.293157 TCGTGTAATTATCTCTATCTCAAGCAG 58.707 37.037 0.00 0.00 0.00 4.24
645 646 8.166422 TCGTGTAATTATCTCTATCTCAAGCA 57.834 34.615 0.00 0.00 0.00 3.91
654 655 9.783081 TGTGGTACTATCGTGTAATTATCTCTA 57.217 33.333 0.00 0.00 0.00 2.43
777 778 6.590292 AGTTCCAGTGTCAATACGTAGAAATG 59.410 38.462 0.08 0.00 0.00 2.32
794 795 4.003788 CGGGCGGTCAGTTCCAGT 62.004 66.667 0.00 0.00 0.00 4.00
1044 1076 2.036475 GGATGAGGTCGAGTGCATGTAT 59.964 50.000 0.00 0.00 0.00 2.29
1130 1162 6.913673 CAGCAAAATCAACCAAATCAAAAAGG 59.086 34.615 0.00 0.00 0.00 3.11
1161 1193 6.767456 TCATACAAACAAAATGCCCAAATCT 58.233 32.000 0.00 0.00 0.00 2.40
1207 1239 4.080356 CCCTGGTAATCTGGATCTTCAACA 60.080 45.833 0.00 0.00 36.68 3.33
1257 1289 1.078143 GCCTTCCCGTGCTTCTCAT 60.078 57.895 0.00 0.00 0.00 2.90
1307 1339 3.244596 GCTAAGAACCTTCTCCCTGTGTT 60.245 47.826 0.00 0.00 36.28 3.32
1334 1366 2.332063 ACAATTCATACCGGCTCTGG 57.668 50.000 0.00 0.00 0.00 3.86
1404 1436 4.826733 TGTTCAATATGCCACTGTCAAACT 59.173 37.500 0.00 0.00 0.00 2.66
1652 1688 9.545105 TTTGAACAGATTTGCACTCAATATTTT 57.455 25.926 0.00 0.00 31.33 1.82
1709 1893 5.722923 TGTACCTACCCACTAAATAACAGCT 59.277 40.000 0.00 0.00 0.00 4.24
1889 2074 5.011533 CCCATTCAACAAACCCACAATTCTA 59.988 40.000 0.00 0.00 0.00 2.10
2125 2310 4.082895 GCAAACTGCAGATGTCTGAAATCT 60.083 41.667 23.35 4.45 46.59 2.40
2145 2330 6.683715 CATTCATGCTGATATGTAATGGCAA 58.316 36.000 0.00 0.00 33.44 4.52
2288 2473 2.550180 GCTTCAACTTCAGGTTCTGGAC 59.450 50.000 0.00 0.00 35.74 4.02
2367 2552 3.761218 CTCCTCAGACTTTGTGAGCTCTA 59.239 47.826 16.19 0.75 40.22 2.43
2545 2730 5.745312 TTCTTCACTTCTCTAAGATGGCA 57.255 39.130 0.00 0.00 36.50 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.