Multiple sequence alignment - TraesCS5D01G362700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G362700 chr5D 100.000 3929 0 0 1 3929 441114235 441110307 0.000000e+00 7256
1 TraesCS5D01G362700 chr5D 79.757 494 75 17 2544 3018 441122949 441122462 6.290000e-88 335
2 TraesCS5D01G362700 chr5D 81.910 398 68 3 2533 2927 440728642 440729038 2.260000e-87 333
3 TraesCS5D01G362700 chr5D 82.972 323 48 7 1106 1426 440788825 440789142 6.430000e-73 285
4 TraesCS5D01G362700 chr5D 84.053 301 43 3 2544 2843 440917350 440917646 6.430000e-73 285
5 TraesCS5D01G362700 chr5D 75.000 636 139 8 1279 1896 440892853 440893486 3.870000e-70 276
6 TraesCS5D01G362700 chr5D 79.534 386 72 5 2544 2927 440901967 440902347 6.470000e-68 268
7 TraesCS5D01G362700 chr5D 76.083 531 103 18 1287 1796 440916128 440916655 5.040000e-64 255
8 TraesCS5D01G362700 chr5D 77.749 382 75 5 1534 1911 441260749 441260374 3.950000e-55 226
9 TraesCS5D01G362700 chr5D 74.772 329 78 3 1465 1789 440900953 440901280 4.090000e-30 143
10 TraesCS5D01G362700 chr5D 78.462 195 36 6 1970 2162 288423256 288423066 5.330000e-24 122
11 TraesCS5D01G362700 chr5B 94.707 2777 110 19 484 3242 536688829 536686072 0.000000e+00 4279
12 TraesCS5D01G362700 chr5B 93.362 708 35 6 3229 3929 536685968 536685266 0.000000e+00 1037
13 TraesCS5D01G362700 chr5B 92.888 464 32 1 3 466 688792413 688791951 0.000000e+00 673
14 TraesCS5D01G362700 chr5B 75.079 947 186 29 987 1896 536320293 536321226 2.850000e-106 396
15 TraesCS5D01G362700 chr5B 76.154 650 109 31 2404 3018 536912669 536912031 2.290000e-77 300
16 TraesCS5D01G362700 chr5B 77.586 348 75 2 1448 1792 536928078 536927731 1.430000e-49 207
17 TraesCS5D01G362700 chr5B 76.562 384 73 9 1534 1911 537307522 537307150 1.110000e-45 195
18 TraesCS5D01G362700 chr5B 84.173 139 16 3 1288 1426 536928268 536928136 3.190000e-26 130
19 TraesCS5D01G362700 chr5B 82.877 146 19 1 1281 1426 537308088 537307949 4.120000e-25 126
20 TraesCS5D01G362700 chr5A 94.090 1286 54 14 1818 3087 557350056 557348777 0.000000e+00 1934
21 TraesCS5D01G362700 chr5A 91.808 708 45 5 642 1339 557459929 557459225 0.000000e+00 974
22 TraesCS5D01G362700 chr5A 95.057 526 26 0 3404 3929 557332894 557332369 0.000000e+00 828
23 TraesCS5D01G362700 chr5A 91.494 482 37 1 1333 1814 557458582 557458105 0.000000e+00 660
24 TraesCS5D01G362700 chr5A 93.314 344 17 5 3067 3406 557345377 557345036 1.630000e-138 503
25 TraesCS5D01G362700 chr5A 82.680 306 47 6 2540 2844 556888458 556888758 2.330000e-67 267
26 TraesCS5D01G362700 chr5A 81.173 324 52 9 1106 1426 556783336 556783653 6.520000e-63 252
27 TraesCS5D01G362700 chr5A 79.167 216 41 2 1100 1311 557477275 557477060 3.160000e-31 147
28 TraesCS5D01G362700 chr5A 82.482 137 22 2 2792 2927 556873872 556874007 6.900000e-23 119
29 TraesCS5D01G362700 chr5A 80.137 146 24 5 1111 1255 77791589 77791448 1.930000e-18 104
30 TraesCS5D01G362700 chr2D 97.863 468 9 1 3 469 318341044 318340577 0.000000e+00 808
31 TraesCS5D01G362700 chr2D 78.414 454 62 19 988 1426 520537706 520537274 3.010000e-66 263
32 TraesCS5D01G362700 chr7D 98.056 463 9 0 3 465 202025140 202024678 0.000000e+00 806
33 TraesCS5D01G362700 chr7D 75.641 468 94 10 4 466 385698846 385699298 8.550000e-52 215
34 TraesCS5D01G362700 chr3D 96.552 464 13 3 3 466 12110231 12110691 0.000000e+00 765
35 TraesCS5D01G362700 chr3B 93.133 466 31 1 3 468 671863549 671863085 0.000000e+00 682
36 TraesCS5D01G362700 chr6A 86.147 462 61 3 5 466 455488658 455488200 2.730000e-136 496
37 TraesCS5D01G362700 chr3A 85.376 465 64 4 5 469 15423557 15424017 2.750000e-131 479
38 TraesCS5D01G362700 chr7B 94.424 269 13 2 201 468 649345626 649345893 2.830000e-111 412
39 TraesCS5D01G362700 chr7B 95.789 95 4 0 3 97 649341454 649341548 1.890000e-33 154
40 TraesCS5D01G362700 chr7B 96.386 83 3 0 42 124 649341549 649341631 1.900000e-28 137
41 TraesCS5D01G362700 chr1D 79.582 431 77 9 2506 2926 461148037 461147608 8.250000e-77 298
42 TraesCS5D01G362700 chr1D 82.090 134 20 3 1107 1238 478992224 478992093 1.150000e-20 111
43 TraesCS5D01G362700 chr6D 75.801 281 51 13 1124 1400 71053180 71052913 4.120000e-25 126
44 TraesCS5D01G362700 chr1A 85.185 108 16 0 2055 2162 139815485 139815592 1.150000e-20 111
45 TraesCS5D01G362700 chr7A 81.481 135 21 4 1106 1238 700679491 700679359 1.490000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G362700 chr5D 441110307 441114235 3928 True 7256.000000 7256 100.0000 1 3929 1 chr5D.!!$R2 3928
1 TraesCS5D01G362700 chr5D 440892853 440893486 633 False 276.000000 276 75.0000 1279 1896 1 chr5D.!!$F3 617
2 TraesCS5D01G362700 chr5D 440916128 440917646 1518 False 270.000000 285 80.0680 1287 2843 2 chr5D.!!$F5 1556
3 TraesCS5D01G362700 chr5D 440900953 440902347 1394 False 205.500000 268 77.1530 1465 2927 2 chr5D.!!$F4 1462
4 TraesCS5D01G362700 chr5B 536685266 536688829 3563 True 2658.000000 4279 94.0345 484 3929 2 chr5B.!!$R3 3445
5 TraesCS5D01G362700 chr5B 536320293 536321226 933 False 396.000000 396 75.0790 987 1896 1 chr5B.!!$F1 909
6 TraesCS5D01G362700 chr5B 536912031 536912669 638 True 300.000000 300 76.1540 2404 3018 1 chr5B.!!$R1 614
7 TraesCS5D01G362700 chr5A 557345036 557350056 5020 True 1218.500000 1934 93.7020 1818 3406 2 chr5A.!!$R4 1588
8 TraesCS5D01G362700 chr5A 557332369 557332894 525 True 828.000000 828 95.0570 3404 3929 1 chr5A.!!$R2 525
9 TraesCS5D01G362700 chr5A 557458105 557459929 1824 True 817.000000 974 91.6510 642 1814 2 chr5A.!!$R5 1172
10 TraesCS5D01G362700 chr7B 649341454 649345893 4439 False 234.333333 412 95.5330 3 468 3 chr7B.!!$F1 465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 2666 0.034089 AGAAGCTCCCCCGGATTTTG 60.034 55.000 0.73 0.0 0.00 2.44 F
392 2668 0.114364 AAGCTCCCCCGGATTTTGTT 59.886 50.000 0.73 0.0 0.00 2.83 F
459 2735 0.178068 GCGGCAGTATTTCTCCCTCA 59.822 55.000 0.00 0.0 0.00 3.86 F
1197 3495 1.137825 GACACGCCTTCTCTCCTCG 59.862 63.158 0.00 0.0 0.00 4.63 F
1770 4748 1.399440 CTTGTCATTGAGGATGCACCG 59.601 52.381 0.00 0.0 44.74 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 5030 1.210931 CCTTCACTGTGCGCATTGG 59.789 57.895 15.91 9.61 0.00 3.16 R
2251 5240 3.716353 TGTATGTCCAACTAGGCATCCAT 59.284 43.478 0.00 0.00 36.18 3.41 R
2327 5338 6.017440 GCTGTTTTGACCACTACATCTGTTAA 60.017 38.462 0.00 0.00 0.00 2.01 R
2670 5750 3.005791 ACTTGGCAAAGTTAACATCTGGC 59.994 43.478 8.61 13.49 44.47 4.85 R
3688 11941 0.460284 ACCATGTAAAGCTCGCGAGG 60.460 55.000 35.10 19.66 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.048470 GACAAGGGTGGAGGGGGC 62.048 72.222 0.00 0.00 0.00 5.80
46 47 1.540797 GCTGAGAGATCACCATGGAGC 60.541 57.143 21.47 9.78 0.00 4.70
84 141 3.942748 GTGCCACCACTTTCCGAATATTA 59.057 43.478 0.00 0.00 38.93 0.98
107 164 0.036306 ACCCGGAAGCGACTGAAATT 59.964 50.000 0.73 0.00 0.00 1.82
137 2413 1.533994 AAGGGCTTTGGAACTGGCC 60.534 57.895 0.00 0.00 45.34 5.36
144 2420 1.065410 TTTGGAACTGGCCAGGGAGA 61.065 55.000 35.42 14.73 39.52 3.71
176 2452 2.205074 CGCATACATCTGGAGTTGGAC 58.795 52.381 0.00 0.00 0.00 4.02
177 2453 2.418609 CGCATACATCTGGAGTTGGACA 60.419 50.000 0.00 0.00 0.00 4.02
178 2454 3.201290 GCATACATCTGGAGTTGGACAG 58.799 50.000 0.00 0.00 36.07 3.51
179 2455 3.369892 GCATACATCTGGAGTTGGACAGT 60.370 47.826 0.00 0.00 36.17 3.55
180 2456 4.437239 CATACATCTGGAGTTGGACAGTC 58.563 47.826 0.00 0.00 36.17 3.51
181 2457 2.329267 ACATCTGGAGTTGGACAGTCA 58.671 47.619 2.17 0.00 36.17 3.41
182 2458 2.705658 ACATCTGGAGTTGGACAGTCAA 59.294 45.455 2.17 0.00 36.17 3.18
183 2459 3.244353 ACATCTGGAGTTGGACAGTCAAG 60.244 47.826 2.17 0.00 36.17 3.02
184 2460 1.070758 TCTGGAGTTGGACAGTCAAGC 59.929 52.381 2.17 0.00 36.17 4.01
185 2461 0.108585 TGGAGTTGGACAGTCAAGCC 59.891 55.000 2.17 0.00 0.00 4.35
186 2462 0.398318 GGAGTTGGACAGTCAAGCCT 59.602 55.000 2.17 0.00 0.00 4.58
187 2463 1.202818 GGAGTTGGACAGTCAAGCCTT 60.203 52.381 2.17 0.00 0.00 4.35
188 2464 1.876156 GAGTTGGACAGTCAAGCCTTG 59.124 52.381 2.17 0.00 0.00 3.61
189 2465 1.490490 AGTTGGACAGTCAAGCCTTGA 59.510 47.619 2.24 2.24 37.33 3.02
190 2466 2.107204 AGTTGGACAGTCAAGCCTTGAT 59.893 45.455 10.87 0.00 42.47 2.57
191 2467 2.189594 TGGACAGTCAAGCCTTGATG 57.810 50.000 10.87 11.83 42.47 3.07
192 2468 0.807496 GGACAGTCAAGCCTTGATGC 59.193 55.000 10.87 0.00 42.47 3.91
193 2469 1.527034 GACAGTCAAGCCTTGATGCA 58.473 50.000 10.87 0.00 42.47 3.96
194 2470 1.467734 GACAGTCAAGCCTTGATGCAG 59.532 52.381 10.87 3.94 42.47 4.41
195 2471 1.072806 ACAGTCAAGCCTTGATGCAGA 59.927 47.619 10.87 0.00 42.47 4.26
196 2472 2.290768 ACAGTCAAGCCTTGATGCAGAT 60.291 45.455 10.87 0.00 42.47 2.90
197 2473 2.097629 CAGTCAAGCCTTGATGCAGATG 59.902 50.000 10.87 0.24 42.47 2.90
198 2474 1.100510 TCAAGCCTTGATGCAGATGC 58.899 50.000 2.24 0.00 36.76 3.91
199 2475 1.103803 CAAGCCTTGATGCAGATGCT 58.896 50.000 0.00 0.00 42.66 3.79
200 2476 2.092807 TCAAGCCTTGATGCAGATGCTA 60.093 45.455 2.24 0.00 37.00 3.49
201 2477 2.686405 CAAGCCTTGATGCAGATGCTAA 59.314 45.455 0.00 0.00 42.66 3.09
202 2478 3.008835 AGCCTTGATGCAGATGCTAAA 57.991 42.857 6.35 0.00 42.66 1.85
203 2479 3.359033 AGCCTTGATGCAGATGCTAAAA 58.641 40.909 6.35 0.00 42.66 1.52
204 2480 3.129988 AGCCTTGATGCAGATGCTAAAAC 59.870 43.478 6.35 0.00 42.66 2.43
205 2481 3.119388 GCCTTGATGCAGATGCTAAAACA 60.119 43.478 6.35 0.00 42.66 2.83
206 2482 4.669318 CCTTGATGCAGATGCTAAAACAG 58.331 43.478 6.35 0.00 42.66 3.16
216 2492 1.519408 GCTAAAACAGCCCACGAAGA 58.481 50.000 0.00 0.00 45.23 2.87
217 2493 1.877443 GCTAAAACAGCCCACGAAGAA 59.123 47.619 0.00 0.00 45.23 2.52
218 2494 2.350484 GCTAAAACAGCCCACGAAGAAC 60.350 50.000 0.00 0.00 45.23 3.01
219 2495 1.029681 AAAACAGCCCACGAAGAACC 58.970 50.000 0.00 0.00 0.00 3.62
220 2496 0.182775 AAACAGCCCACGAAGAACCT 59.817 50.000 0.00 0.00 0.00 3.50
221 2497 0.535102 AACAGCCCACGAAGAACCTG 60.535 55.000 0.00 0.00 0.00 4.00
222 2498 1.672356 CAGCCCACGAAGAACCTGG 60.672 63.158 0.00 0.00 0.00 4.45
223 2499 2.359975 GCCCACGAAGAACCTGGG 60.360 66.667 0.00 0.69 44.21 4.45
224 2500 2.359975 CCCACGAAGAACCTGGGC 60.360 66.667 0.00 0.00 37.84 5.36
225 2501 2.742372 CCACGAAGAACCTGGGCG 60.742 66.667 0.00 0.00 0.00 6.13
226 2502 2.030562 CACGAAGAACCTGGGCGT 59.969 61.111 0.00 0.00 35.33 5.68
227 2503 2.027625 CACGAAGAACCTGGGCGTC 61.028 63.158 0.00 0.00 32.27 5.19
228 2504 2.342279 CGAAGAACCTGGGCGTCA 59.658 61.111 0.00 0.00 0.00 4.35
229 2505 2.027625 CGAAGAACCTGGGCGTCAC 61.028 63.158 0.00 0.00 0.00 3.67
230 2506 1.371558 GAAGAACCTGGGCGTCACT 59.628 57.895 0.00 0.00 0.00 3.41
231 2507 0.951040 GAAGAACCTGGGCGTCACTG 60.951 60.000 0.00 0.00 0.00 3.66
232 2508 2.358737 GAACCTGGGCGTCACTGG 60.359 66.667 0.00 0.00 0.00 4.00
233 2509 3.168528 AACCTGGGCGTCACTGGT 61.169 61.111 0.00 5.13 41.23 4.00
234 2510 3.178540 AACCTGGGCGTCACTGGTC 62.179 63.158 10.19 0.00 38.95 4.02
235 2511 4.394712 CCTGGGCGTCACTGGTCC 62.395 72.222 0.00 0.00 0.00 4.46
236 2512 3.625897 CTGGGCGTCACTGGTCCA 61.626 66.667 0.00 0.00 0.00 4.02
237 2513 2.927856 TGGGCGTCACTGGTCCAT 60.928 61.111 0.00 0.00 0.00 3.41
238 2514 2.436646 GGGCGTCACTGGTCCATG 60.437 66.667 0.00 0.00 0.00 3.66
239 2515 2.436646 GGCGTCACTGGTCCATGG 60.437 66.667 4.97 4.97 0.00 3.66
240 2516 2.436646 GCGTCACTGGTCCATGGG 60.437 66.667 13.02 0.00 0.00 4.00
241 2517 3.068881 CGTCACTGGTCCATGGGT 58.931 61.111 13.02 0.00 0.00 4.51
242 2518 1.375908 CGTCACTGGTCCATGGGTG 60.376 63.158 13.02 12.09 0.00 4.61
256 2532 3.635591 CATGGGTGGAGGATTTAAAGCT 58.364 45.455 3.10 0.00 0.00 3.74
257 2533 3.825908 TGGGTGGAGGATTTAAAGCTT 57.174 42.857 3.10 0.00 0.00 3.74
258 2534 4.126520 TGGGTGGAGGATTTAAAGCTTT 57.873 40.909 17.30 17.30 0.00 3.51
259 2535 4.488770 TGGGTGGAGGATTTAAAGCTTTT 58.511 39.130 18.47 0.00 0.00 2.27
260 2536 4.283212 TGGGTGGAGGATTTAAAGCTTTTG 59.717 41.667 18.47 0.00 0.00 2.44
275 2551 4.385244 GCTTTTGCTGCATTCTTTTCAG 57.615 40.909 1.84 0.00 43.35 3.02
276 2552 3.185797 GCTTTTGCTGCATTCTTTTCAGG 59.814 43.478 1.84 0.00 43.35 3.86
277 2553 3.389925 TTTGCTGCATTCTTTTCAGGG 57.610 42.857 1.84 0.00 0.00 4.45
278 2554 1.999648 TGCTGCATTCTTTTCAGGGT 58.000 45.000 0.00 0.00 0.00 4.34
279 2555 2.318908 TGCTGCATTCTTTTCAGGGTT 58.681 42.857 0.00 0.00 0.00 4.11
280 2556 2.699846 TGCTGCATTCTTTTCAGGGTTT 59.300 40.909 0.00 0.00 0.00 3.27
281 2557 3.134442 TGCTGCATTCTTTTCAGGGTTTT 59.866 39.130 0.00 0.00 0.00 2.43
282 2558 4.343526 TGCTGCATTCTTTTCAGGGTTTTA 59.656 37.500 0.00 0.00 0.00 1.52
283 2559 5.163364 TGCTGCATTCTTTTCAGGGTTTTAA 60.163 36.000 0.00 0.00 0.00 1.52
284 2560 5.757808 GCTGCATTCTTTTCAGGGTTTTAAA 59.242 36.000 0.00 0.00 0.00 1.52
285 2561 6.073602 GCTGCATTCTTTTCAGGGTTTTAAAG 60.074 38.462 0.00 0.00 0.00 1.85
286 2562 6.883744 TGCATTCTTTTCAGGGTTTTAAAGT 58.116 32.000 0.00 0.00 0.00 2.66
287 2563 6.983890 TGCATTCTTTTCAGGGTTTTAAAGTC 59.016 34.615 0.00 0.00 0.00 3.01
288 2564 7.147742 TGCATTCTTTTCAGGGTTTTAAAGTCT 60.148 33.333 0.00 0.00 0.00 3.24
289 2565 7.382488 GCATTCTTTTCAGGGTTTTAAAGTCTC 59.618 37.037 0.00 0.00 0.00 3.36
290 2566 8.633561 CATTCTTTTCAGGGTTTTAAAGTCTCT 58.366 33.333 0.00 0.00 0.00 3.10
291 2567 8.589701 TTCTTTTCAGGGTTTTAAAGTCTCTT 57.410 30.769 0.00 0.00 0.00 2.85
292 2568 7.996385 TCTTTTCAGGGTTTTAAAGTCTCTTG 58.004 34.615 0.00 0.00 0.00 3.02
293 2569 6.709018 TTTCAGGGTTTTAAAGTCTCTTGG 57.291 37.500 0.00 0.00 0.00 3.61
294 2570 4.725490 TCAGGGTTTTAAAGTCTCTTGGG 58.275 43.478 0.00 0.00 0.00 4.12
295 2571 4.167307 TCAGGGTTTTAAAGTCTCTTGGGT 59.833 41.667 0.00 0.00 0.00 4.51
296 2572 4.893524 CAGGGTTTTAAAGTCTCTTGGGTT 59.106 41.667 0.00 0.00 0.00 4.11
297 2573 6.066032 CAGGGTTTTAAAGTCTCTTGGGTTA 58.934 40.000 0.00 0.00 0.00 2.85
298 2574 6.206829 CAGGGTTTTAAAGTCTCTTGGGTTAG 59.793 42.308 0.00 0.00 0.00 2.34
299 2575 5.475909 GGGTTTTAAAGTCTCTTGGGTTAGG 59.524 44.000 0.00 0.00 0.00 2.69
300 2576 6.301486 GGTTTTAAAGTCTCTTGGGTTAGGA 58.699 40.000 0.00 0.00 0.00 2.94
301 2577 6.430308 GGTTTTAAAGTCTCTTGGGTTAGGAG 59.570 42.308 0.00 0.00 34.00 3.69
302 2578 7.222161 GTTTTAAAGTCTCTTGGGTTAGGAGA 58.778 38.462 0.00 0.00 39.01 3.71
303 2579 7.569599 TTTAAAGTCTCTTGGGTTAGGAGAT 57.430 36.000 0.00 0.00 42.63 2.75
304 2580 5.685520 AAAGTCTCTTGGGTTAGGAGATC 57.314 43.478 0.00 0.00 42.63 2.75
305 2581 4.618378 AGTCTCTTGGGTTAGGAGATCT 57.382 45.455 0.00 0.00 42.63 2.75
306 2582 4.285863 AGTCTCTTGGGTTAGGAGATCTG 58.714 47.826 0.00 0.00 42.63 2.90
307 2583 3.034635 TCTCTTGGGTTAGGAGATCTGC 58.965 50.000 6.03 6.03 36.68 4.26
308 2584 3.037549 CTCTTGGGTTAGGAGATCTGCT 58.962 50.000 21.29 21.29 34.59 4.24
309 2585 4.079154 TCTCTTGGGTTAGGAGATCTGCTA 60.079 45.833 19.07 19.07 36.68 3.49
310 2586 4.620723 TCTTGGGTTAGGAGATCTGCTAA 58.379 43.478 27.27 27.27 40.43 3.09
311 2587 5.219739 TCTTGGGTTAGGAGATCTGCTAAT 58.780 41.667 31.55 9.50 43.58 1.73
312 2588 4.963318 TGGGTTAGGAGATCTGCTAATG 57.037 45.455 31.55 0.00 43.58 1.90
313 2589 4.298626 TGGGTTAGGAGATCTGCTAATGT 58.701 43.478 31.55 8.81 43.58 2.71
314 2590 4.721776 TGGGTTAGGAGATCTGCTAATGTT 59.278 41.667 31.55 8.13 43.58 2.71
315 2591 5.059833 GGGTTAGGAGATCTGCTAATGTTG 58.940 45.833 31.55 0.00 43.58 3.33
316 2592 4.513318 GGTTAGGAGATCTGCTAATGTTGC 59.487 45.833 31.55 20.89 43.58 4.17
317 2593 3.205784 AGGAGATCTGCTAATGTTGCC 57.794 47.619 16.05 0.00 0.00 4.52
318 2594 1.869767 GGAGATCTGCTAATGTTGCCG 59.130 52.381 7.03 0.00 0.00 5.69
319 2595 1.262683 GAGATCTGCTAATGTTGCCGC 59.737 52.381 0.00 0.00 0.00 6.53
320 2596 0.041839 GATCTGCTAATGTTGCCGCG 60.042 55.000 0.00 0.00 0.00 6.46
321 2597 2.051804 ATCTGCTAATGTTGCCGCGC 62.052 55.000 0.00 0.00 0.00 6.86
322 2598 3.037992 CTGCTAATGTTGCCGCGCA 62.038 57.895 8.75 0.00 36.47 6.09
323 2599 2.576847 GCTAATGTTGCCGCGCAC 60.577 61.111 8.75 0.00 38.71 5.34
324 2600 2.866750 CTAATGTTGCCGCGCACA 59.133 55.556 8.75 4.09 38.71 4.57
325 2601 1.208870 CTAATGTTGCCGCGCACAA 59.791 52.632 8.75 8.69 38.71 3.33
326 2602 0.794229 CTAATGTTGCCGCGCACAAG 60.794 55.000 12.67 0.00 38.71 3.16
327 2603 1.511318 TAATGTTGCCGCGCACAAGT 61.511 50.000 12.67 3.18 38.71 3.16
328 2604 2.348605 AATGTTGCCGCGCACAAGTT 62.349 50.000 12.67 8.51 38.71 2.66
329 2605 2.278531 GTTGCCGCGCACAAGTTT 60.279 55.556 12.67 0.00 38.71 2.66
330 2606 2.278466 TTGCCGCGCACAAGTTTG 60.278 55.556 8.75 0.00 38.71 2.93
331 2607 4.921847 TGCCGCGCACAAGTTTGC 62.922 61.111 8.75 0.00 39.28 3.68
332 2608 4.629115 GCCGCGCACAAGTTTGCT 62.629 61.111 8.75 0.00 40.62 3.91
333 2609 2.942879 CCGCGCACAAGTTTGCTA 59.057 55.556 8.75 0.00 40.62 3.49
334 2610 1.281353 CCGCGCACAAGTTTGCTAA 59.719 52.632 8.75 0.00 40.62 3.09
335 2611 0.317436 CCGCGCACAAGTTTGCTAAA 60.317 50.000 8.75 0.00 40.62 1.85
336 2612 1.044725 CGCGCACAAGTTTGCTAAAG 58.955 50.000 8.75 0.00 40.62 1.85
337 2613 1.596954 CGCGCACAAGTTTGCTAAAGT 60.597 47.619 8.75 0.00 40.62 2.66
338 2614 2.349060 CGCGCACAAGTTTGCTAAAGTA 60.349 45.455 8.75 0.00 40.62 2.24
339 2615 3.226347 GCGCACAAGTTTGCTAAAGTAG 58.774 45.455 0.30 0.00 40.62 2.57
340 2616 3.810373 CGCACAAGTTTGCTAAAGTAGG 58.190 45.455 7.94 0.00 40.62 3.18
341 2617 3.364964 CGCACAAGTTTGCTAAAGTAGGG 60.365 47.826 7.94 0.00 40.62 3.53
342 2618 3.057526 GCACAAGTTTGCTAAAGTAGGGG 60.058 47.826 3.65 0.00 39.59 4.79
343 2619 3.057526 CACAAGTTTGCTAAAGTAGGGGC 60.058 47.826 0.00 0.00 0.00 5.80
344 2620 2.109425 AGTTTGCTAAAGTAGGGGCG 57.891 50.000 0.00 0.00 0.00 6.13
345 2621 1.092348 GTTTGCTAAAGTAGGGGCGG 58.908 55.000 0.00 0.00 0.00 6.13
346 2622 0.034863 TTTGCTAAAGTAGGGGCGGG 60.035 55.000 0.00 0.00 0.00 6.13
347 2623 0.910566 TTGCTAAAGTAGGGGCGGGA 60.911 55.000 0.00 0.00 0.00 5.14
348 2624 1.335132 TGCTAAAGTAGGGGCGGGAG 61.335 60.000 0.00 0.00 0.00 4.30
349 2625 1.047034 GCTAAAGTAGGGGCGGGAGA 61.047 60.000 0.00 0.00 0.00 3.71
350 2626 0.751452 CTAAAGTAGGGGCGGGAGAC 59.249 60.000 0.00 0.00 0.00 3.36
365 2641 4.732672 GGGAGACGAACTATGTAAGGTT 57.267 45.455 0.00 0.00 0.00 3.50
366 2642 5.082251 GGGAGACGAACTATGTAAGGTTT 57.918 43.478 0.00 0.00 0.00 3.27
367 2643 4.868734 GGGAGACGAACTATGTAAGGTTTG 59.131 45.833 0.00 0.00 34.16 2.93
368 2644 4.868734 GGAGACGAACTATGTAAGGTTTGG 59.131 45.833 0.00 0.00 32.73 3.28
369 2645 5.476614 GAGACGAACTATGTAAGGTTTGGT 58.523 41.667 0.00 0.00 32.73 3.67
370 2646 5.861727 AGACGAACTATGTAAGGTTTGGTT 58.138 37.500 0.00 0.00 32.73 3.67
371 2647 6.996509 AGACGAACTATGTAAGGTTTGGTTA 58.003 36.000 0.00 0.00 32.73 2.85
372 2648 7.095270 AGACGAACTATGTAAGGTTTGGTTAG 58.905 38.462 0.00 0.00 32.73 2.34
373 2649 6.996509 ACGAACTATGTAAGGTTTGGTTAGA 58.003 36.000 0.00 0.00 32.73 2.10
374 2650 7.444299 ACGAACTATGTAAGGTTTGGTTAGAA 58.556 34.615 0.00 0.00 32.73 2.10
375 2651 7.601508 ACGAACTATGTAAGGTTTGGTTAGAAG 59.398 37.037 0.00 0.00 32.73 2.85
376 2652 7.412672 CGAACTATGTAAGGTTTGGTTAGAAGC 60.413 40.741 0.00 0.00 0.00 3.86
377 2653 7.017319 ACTATGTAAGGTTTGGTTAGAAGCT 57.983 36.000 0.00 0.00 36.48 3.74
378 2654 7.104290 ACTATGTAAGGTTTGGTTAGAAGCTC 58.896 38.462 0.00 0.00 34.04 4.09
379 2655 4.648651 TGTAAGGTTTGGTTAGAAGCTCC 58.351 43.478 0.00 0.00 34.04 4.70
380 2656 2.881111 AGGTTTGGTTAGAAGCTCCC 57.119 50.000 0.00 0.00 29.47 4.30
381 2657 1.354705 AGGTTTGGTTAGAAGCTCCCC 59.645 52.381 0.00 0.00 29.47 4.81
382 2658 1.616187 GGTTTGGTTAGAAGCTCCCCC 60.616 57.143 0.00 0.00 0.00 5.40
383 2659 0.326927 TTTGGTTAGAAGCTCCCCCG 59.673 55.000 0.00 0.00 0.00 5.73
384 2660 1.559065 TTGGTTAGAAGCTCCCCCGG 61.559 60.000 0.00 0.00 0.00 5.73
385 2661 1.688187 GGTTAGAAGCTCCCCCGGA 60.688 63.158 0.73 0.00 0.00 5.14
386 2662 1.054978 GGTTAGAAGCTCCCCCGGAT 61.055 60.000 0.73 0.00 0.00 4.18
387 2663 0.837940 GTTAGAAGCTCCCCCGGATT 59.162 55.000 0.73 0.00 0.00 3.01
388 2664 1.212195 GTTAGAAGCTCCCCCGGATTT 59.788 52.381 0.73 0.00 0.00 2.17
389 2665 1.591768 TAGAAGCTCCCCCGGATTTT 58.408 50.000 0.73 0.00 0.00 1.82
390 2666 0.034089 AGAAGCTCCCCCGGATTTTG 60.034 55.000 0.73 0.00 0.00 2.44
391 2667 0.323451 GAAGCTCCCCCGGATTTTGT 60.323 55.000 0.73 0.00 0.00 2.83
392 2668 0.114364 AAGCTCCCCCGGATTTTGTT 59.886 50.000 0.73 0.00 0.00 2.83
393 2669 0.323451 AGCTCCCCCGGATTTTGTTC 60.323 55.000 0.73 0.00 0.00 3.18
394 2670 0.323451 GCTCCCCCGGATTTTGTTCT 60.323 55.000 0.73 0.00 0.00 3.01
395 2671 1.891011 GCTCCCCCGGATTTTGTTCTT 60.891 52.381 0.73 0.00 0.00 2.52
396 2672 1.818674 CTCCCCCGGATTTTGTTCTTG 59.181 52.381 0.73 0.00 0.00 3.02
397 2673 1.425831 TCCCCCGGATTTTGTTCTTGA 59.574 47.619 0.73 0.00 0.00 3.02
398 2674 2.042433 TCCCCCGGATTTTGTTCTTGAT 59.958 45.455 0.73 0.00 0.00 2.57
399 2675 2.166254 CCCCCGGATTTTGTTCTTGATG 59.834 50.000 0.73 0.00 0.00 3.07
400 2676 2.825532 CCCCGGATTTTGTTCTTGATGT 59.174 45.455 0.73 0.00 0.00 3.06
401 2677 4.013728 CCCCGGATTTTGTTCTTGATGTA 58.986 43.478 0.73 0.00 0.00 2.29
402 2678 4.461081 CCCCGGATTTTGTTCTTGATGTAA 59.539 41.667 0.73 0.00 0.00 2.41
403 2679 5.127031 CCCCGGATTTTGTTCTTGATGTAAT 59.873 40.000 0.73 0.00 0.00 1.89
404 2680 6.350949 CCCCGGATTTTGTTCTTGATGTAATT 60.351 38.462 0.73 0.00 0.00 1.40
405 2681 7.096551 CCCGGATTTTGTTCTTGATGTAATTT 58.903 34.615 0.73 0.00 0.00 1.82
406 2682 7.275560 CCCGGATTTTGTTCTTGATGTAATTTC 59.724 37.037 0.73 0.00 0.00 2.17
407 2683 7.008266 CCGGATTTTGTTCTTGATGTAATTTCG 59.992 37.037 0.00 0.00 0.00 3.46
408 2684 7.008266 CGGATTTTGTTCTTGATGTAATTTCGG 59.992 37.037 0.00 0.00 0.00 4.30
409 2685 8.026607 GGATTTTGTTCTTGATGTAATTTCGGA 58.973 33.333 0.00 0.00 0.00 4.55
410 2686 9.573133 GATTTTGTTCTTGATGTAATTTCGGAT 57.427 29.630 0.00 0.00 0.00 4.18
411 2687 8.741101 TTTTGTTCTTGATGTAATTTCGGATG 57.259 30.769 0.00 0.00 0.00 3.51
412 2688 7.680442 TTGTTCTTGATGTAATTTCGGATGA 57.320 32.000 0.00 0.00 0.00 2.92
413 2689 7.072177 TGTTCTTGATGTAATTTCGGATGAC 57.928 36.000 0.00 0.00 0.00 3.06
414 2690 6.652900 TGTTCTTGATGTAATTTCGGATGACA 59.347 34.615 0.00 0.00 0.00 3.58
415 2691 7.336679 TGTTCTTGATGTAATTTCGGATGACAT 59.663 33.333 3.25 3.25 33.52 3.06
416 2692 7.864108 TCTTGATGTAATTTCGGATGACATT 57.136 32.000 4.74 0.00 31.03 2.71
417 2693 7.919690 TCTTGATGTAATTTCGGATGACATTC 58.080 34.615 4.74 0.00 31.03 2.67
418 2694 6.618287 TGATGTAATTTCGGATGACATTCC 57.382 37.500 4.74 0.00 31.03 3.01
419 2695 6.118852 TGATGTAATTTCGGATGACATTCCA 58.881 36.000 4.74 0.00 35.34 3.53
420 2696 6.601217 TGATGTAATTTCGGATGACATTCCAA 59.399 34.615 4.74 0.00 35.34 3.53
421 2697 6.825944 TGTAATTTCGGATGACATTCCAAA 57.174 33.333 0.00 0.00 35.34 3.28
422 2698 6.616947 TGTAATTTCGGATGACATTCCAAAC 58.383 36.000 0.00 0.00 35.34 2.93
423 2699 5.982890 AATTTCGGATGACATTCCAAACT 57.017 34.783 0.00 0.00 35.34 2.66
424 2700 7.608376 TGTAATTTCGGATGACATTCCAAACTA 59.392 33.333 0.00 0.00 35.34 2.24
425 2701 5.873179 TTTCGGATGACATTCCAAACTAC 57.127 39.130 0.00 0.00 35.34 2.73
426 2702 3.517602 TCGGATGACATTCCAAACTACG 58.482 45.455 0.00 0.00 35.34 3.51
427 2703 3.056393 TCGGATGACATTCCAAACTACGT 60.056 43.478 0.00 0.00 35.34 3.57
428 2704 3.062099 CGGATGACATTCCAAACTACGTG 59.938 47.826 0.00 0.00 35.34 4.49
429 2705 4.000988 GGATGACATTCCAAACTACGTGT 58.999 43.478 0.00 0.00 35.72 4.49
430 2706 4.454504 GGATGACATTCCAAACTACGTGTT 59.545 41.667 0.00 0.00 41.29 3.32
432 2708 5.821516 TGACATTCCAAACTACGTGTTTT 57.178 34.783 11.69 2.60 45.69 2.43
433 2709 6.922247 TGACATTCCAAACTACGTGTTTTA 57.078 33.333 11.69 3.59 45.69 1.52
434 2710 7.317842 TGACATTCCAAACTACGTGTTTTAA 57.682 32.000 11.69 10.11 45.69 1.52
435 2711 7.759465 TGACATTCCAAACTACGTGTTTTAAA 58.241 30.769 11.69 9.86 45.69 1.52
436 2712 8.407064 TGACATTCCAAACTACGTGTTTTAAAT 58.593 29.630 11.69 11.16 45.69 1.40
437 2713 9.881529 GACATTCCAAACTACGTGTTTTAAATA 57.118 29.630 11.69 0.96 45.69 1.40
441 2717 8.785468 TCCAAACTACGTGTTTTAAATAAAGC 57.215 30.769 11.69 0.00 45.69 3.51
442 2718 7.587028 TCCAAACTACGTGTTTTAAATAAAGCG 59.413 33.333 11.69 0.00 45.69 4.68
443 2719 7.149096 CCAAACTACGTGTTTTAAATAAAGCGG 60.149 37.037 11.69 4.93 45.69 5.52
444 2720 5.384787 ACTACGTGTTTTAAATAAAGCGGC 58.615 37.500 0.00 0.00 0.00 6.53
445 2721 4.226113 ACGTGTTTTAAATAAAGCGGCA 57.774 36.364 1.45 0.00 0.00 5.69
446 2722 4.223659 ACGTGTTTTAAATAAAGCGGCAG 58.776 39.130 1.45 0.00 0.00 4.85
447 2723 4.223659 CGTGTTTTAAATAAAGCGGCAGT 58.776 39.130 1.45 0.00 0.00 4.40
448 2724 5.049543 ACGTGTTTTAAATAAAGCGGCAGTA 60.050 36.000 1.45 0.00 0.00 2.74
449 2725 6.025280 CGTGTTTTAAATAAAGCGGCAGTAT 58.975 36.000 1.45 0.00 0.00 2.12
450 2726 6.525280 CGTGTTTTAAATAAAGCGGCAGTATT 59.475 34.615 1.45 2.56 0.00 1.89
451 2727 7.061326 CGTGTTTTAAATAAAGCGGCAGTATTT 59.939 33.333 18.69 18.69 33.27 1.40
452 2728 8.370321 GTGTTTTAAATAAAGCGGCAGTATTTC 58.630 33.333 18.40 9.42 31.58 2.17
453 2729 8.301002 TGTTTTAAATAAAGCGGCAGTATTTCT 58.699 29.630 18.40 5.24 31.58 2.52
454 2730 8.795341 GTTTTAAATAAAGCGGCAGTATTTCTC 58.205 33.333 18.40 8.76 31.58 2.87
455 2731 5.500645 AAATAAAGCGGCAGTATTTCTCC 57.499 39.130 1.45 0.00 0.00 3.71
456 2732 1.751437 AAAGCGGCAGTATTTCTCCC 58.249 50.000 1.45 0.00 0.00 4.30
457 2733 0.912486 AAGCGGCAGTATTTCTCCCT 59.088 50.000 1.45 0.00 0.00 4.20
458 2734 0.466124 AGCGGCAGTATTTCTCCCTC 59.534 55.000 1.45 0.00 0.00 4.30
459 2735 0.178068 GCGGCAGTATTTCTCCCTCA 59.822 55.000 0.00 0.00 0.00 3.86
460 2736 1.406887 GCGGCAGTATTTCTCCCTCAA 60.407 52.381 0.00 0.00 0.00 3.02
461 2737 2.939640 GCGGCAGTATTTCTCCCTCAAA 60.940 50.000 0.00 0.00 0.00 2.69
462 2738 3.343617 CGGCAGTATTTCTCCCTCAAAA 58.656 45.455 0.00 0.00 0.00 2.44
463 2739 3.756434 CGGCAGTATTTCTCCCTCAAAAA 59.244 43.478 0.00 0.00 0.00 1.94
536 2812 9.844257 TGTATCACATGATCCATATGTAACAAA 57.156 29.630 0.00 0.00 36.67 2.83
941 3239 1.146263 CGCCACCTAACAGGGGATC 59.854 63.158 0.00 0.00 43.10 3.36
962 3260 8.371770 GGATCAGATCCTTCAAAATGTACTAC 57.628 38.462 21.00 0.00 46.19 2.73
967 3265 7.492669 CAGATCCTTCAAAATGTACTACGTGAT 59.507 37.037 0.00 0.00 0.00 3.06
1101 3399 4.796225 GGAGACGGCGAAGAGAAG 57.204 61.111 16.62 0.00 0.00 2.85
1197 3495 1.137825 GACACGCCTTCTCTCCTCG 59.862 63.158 0.00 0.00 0.00 4.63
1770 4748 1.399440 CTTGTCATTGAGGATGCACCG 59.601 52.381 0.00 0.00 44.74 4.94
1959 4939 8.619146 AAACTTACATATGATGCATTTGAACG 57.381 30.769 10.38 0.00 29.79 3.95
2282 5293 7.728532 TGCCTAGTTGGACATACAGAGATAATA 59.271 37.037 0.00 0.00 38.35 0.98
2327 5338 5.190677 CAATTTCCCCCAAACTCTATACGT 58.809 41.667 0.00 0.00 0.00 3.57
2586 5625 5.842339 AGGAAGGATATGAAAAATGTGGGT 58.158 37.500 0.00 0.00 0.00 4.51
2624 5663 6.002082 TCATTGATCCTATTGAATGCCTCAG 58.998 40.000 0.00 0.00 34.81 3.35
2634 5673 3.646534 TGAATGCCTCAGTCTCCATCTA 58.353 45.455 0.00 0.00 29.32 1.98
2637 5676 3.107402 TGCCTCAGTCTCCATCTAAGT 57.893 47.619 0.00 0.00 0.00 2.24
2954 7656 7.267128 TGCCCTTTCAAAATAATATCAAGCTG 58.733 34.615 0.00 0.00 0.00 4.24
3136 11262 1.746787 TCCTCGTCGCTAGTTGCAATA 59.253 47.619 0.59 0.00 43.06 1.90
3182 11308 3.817084 ACAGCCACACACATGATATATGC 59.183 43.478 0.00 0.00 0.00 3.14
3367 11616 1.805345 CTGAAAGAGCAGCTCCTTGTG 59.195 52.381 19.40 3.77 34.07 3.33
3377 11626 1.490490 AGCTCCTTGTGAGTTGGAACA 59.510 47.619 0.00 0.00 43.48 3.18
3406 11655 6.362016 TGTTAGCATATTTGTTTGAAAGTGCG 59.638 34.615 0.00 0.00 36.53 5.34
3512 11761 8.807118 TCTGGGAATTACTAGCTTATCATGTAG 58.193 37.037 0.00 0.00 0.00 2.74
3608 11861 4.644234 TCTTTGAAAGTGCATGTGGAAGAA 59.356 37.500 4.68 0.00 0.00 2.52
3609 11862 5.302568 TCTTTGAAAGTGCATGTGGAAGAAT 59.697 36.000 4.68 0.00 0.00 2.40
3688 11941 4.600692 AGGGTTTGCTTCATTTACCAAC 57.399 40.909 0.00 0.00 0.00 3.77
3694 11947 1.202031 GCTTCATTTACCAACCTCGCG 60.202 52.381 0.00 0.00 0.00 5.87
3910 12163 3.356639 CTGCCGCTAGTCCGCTTCA 62.357 63.158 0.00 0.00 0.00 3.02
3925 12178 2.599645 CTTCATCTCCGGTGGCCTGG 62.600 65.000 3.32 3.21 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.852626 CCCCTCCACCCTTGTCCTT 60.853 63.158 0.00 0.00 0.00 3.36
1 2 2.204151 CCCCTCCACCCTTGTCCT 60.204 66.667 0.00 0.00 0.00 3.85
20 21 0.805322 GGTGATCTCTCAGCACAGCG 60.805 60.000 0.00 0.00 46.77 5.18
46 47 2.593436 ACAAACCCGCCCTGAACG 60.593 61.111 0.00 0.00 0.00 3.95
84 141 2.600769 AGTCGCTTCCGGGTCAGT 60.601 61.111 0.00 0.00 34.56 3.41
107 164 3.294493 GCCCTTCTGCACGCCAAA 61.294 61.111 0.00 0.00 0.00 3.28
137 2413 1.022735 GCTGTGCATTGATCTCCCTG 58.977 55.000 0.00 0.00 0.00 4.45
165 2441 1.517242 GCTTGACTGTCCAACTCCAG 58.483 55.000 5.17 0.00 34.82 3.86
176 2452 1.817357 TCTGCATCAAGGCTTGACTG 58.183 50.000 30.71 26.35 43.48 3.51
177 2453 2.366533 CATCTGCATCAAGGCTTGACT 58.633 47.619 30.71 17.26 43.48 3.41
178 2454 1.202268 GCATCTGCATCAAGGCTTGAC 60.202 52.381 30.71 19.65 43.48 3.18
179 2455 1.100510 GCATCTGCATCAAGGCTTGA 58.899 50.000 30.29 30.29 45.01 3.02
180 2456 1.103803 AGCATCTGCATCAAGGCTTG 58.896 50.000 21.17 21.17 45.16 4.01
181 2457 2.723322 TAGCATCTGCATCAAGGCTT 57.277 45.000 8.09 0.00 45.16 4.35
182 2458 2.723322 TTAGCATCTGCATCAAGGCT 57.277 45.000 4.79 7.92 45.16 4.58
183 2459 3.119388 TGTTTTAGCATCTGCATCAAGGC 60.119 43.478 4.79 0.00 45.16 4.35
184 2460 4.669318 CTGTTTTAGCATCTGCATCAAGG 58.331 43.478 4.79 0.00 45.16 3.61
198 2474 2.225727 GGTTCTTCGTGGGCTGTTTTAG 59.774 50.000 0.00 0.00 0.00 1.85
199 2475 2.158726 AGGTTCTTCGTGGGCTGTTTTA 60.159 45.455 0.00 0.00 0.00 1.52
200 2476 1.029681 GGTTCTTCGTGGGCTGTTTT 58.970 50.000 0.00 0.00 0.00 2.43
201 2477 0.182775 AGGTTCTTCGTGGGCTGTTT 59.817 50.000 0.00 0.00 0.00 2.83
202 2478 0.535102 CAGGTTCTTCGTGGGCTGTT 60.535 55.000 0.00 0.00 0.00 3.16
203 2479 1.071471 CAGGTTCTTCGTGGGCTGT 59.929 57.895 0.00 0.00 0.00 4.40
204 2480 1.672356 CCAGGTTCTTCGTGGGCTG 60.672 63.158 0.00 0.00 45.25 4.85
205 2481 2.750350 CCAGGTTCTTCGTGGGCT 59.250 61.111 0.00 0.00 45.25 5.19
209 2485 2.027625 GACGCCCAGGTTCTTCGTG 61.028 63.158 0.00 0.00 33.21 4.35
210 2486 2.342648 GACGCCCAGGTTCTTCGT 59.657 61.111 0.00 0.00 35.98 3.85
211 2487 2.027625 GTGACGCCCAGGTTCTTCG 61.028 63.158 0.00 0.00 0.00 3.79
212 2488 0.951040 CAGTGACGCCCAGGTTCTTC 60.951 60.000 0.00 0.00 0.00 2.87
213 2489 1.071471 CAGTGACGCCCAGGTTCTT 59.929 57.895 0.00 0.00 0.00 2.52
214 2490 2.743718 CAGTGACGCCCAGGTTCT 59.256 61.111 0.00 0.00 0.00 3.01
215 2491 2.358737 CCAGTGACGCCCAGGTTC 60.359 66.667 0.00 0.00 0.00 3.62
216 2492 3.168528 ACCAGTGACGCCCAGGTT 61.169 61.111 0.00 0.00 0.00 3.50
217 2493 3.626924 GACCAGTGACGCCCAGGT 61.627 66.667 0.00 0.00 34.76 4.00
218 2494 4.394712 GGACCAGTGACGCCCAGG 62.395 72.222 0.00 0.00 0.00 4.45
219 2495 2.959484 ATGGACCAGTGACGCCCAG 61.959 63.158 0.00 0.00 0.00 4.45
220 2496 2.927856 ATGGACCAGTGACGCCCA 60.928 61.111 0.00 0.00 0.00 5.36
221 2497 2.436646 CATGGACCAGTGACGCCC 60.437 66.667 0.00 0.00 0.00 6.13
222 2498 2.436646 CCATGGACCAGTGACGCC 60.437 66.667 5.56 0.00 0.00 5.68
223 2499 2.436646 CCCATGGACCAGTGACGC 60.437 66.667 15.22 0.00 0.00 5.19
224 2500 1.375908 CACCCATGGACCAGTGACG 60.376 63.158 15.22 0.00 31.79 4.35
225 2501 4.722193 CACCCATGGACCAGTGAC 57.278 61.111 15.22 0.00 31.79 3.67
235 2511 3.635591 AGCTTTAAATCCTCCACCCATG 58.364 45.455 0.00 0.00 0.00 3.66
236 2512 4.337264 AAGCTTTAAATCCTCCACCCAT 57.663 40.909 0.00 0.00 0.00 4.00
237 2513 3.825908 AAGCTTTAAATCCTCCACCCA 57.174 42.857 0.00 0.00 0.00 4.51
238 2514 4.820897 CAAAAGCTTTAAATCCTCCACCC 58.179 43.478 13.10 0.00 0.00 4.61
239 2515 4.021104 AGCAAAAGCTTTAAATCCTCCACC 60.021 41.667 13.10 0.00 0.00 4.61
240 2516 4.925646 CAGCAAAAGCTTTAAATCCTCCAC 59.074 41.667 13.10 0.00 0.00 4.02
241 2517 4.561326 GCAGCAAAAGCTTTAAATCCTCCA 60.561 41.667 13.10 0.00 0.00 3.86
242 2518 3.928992 GCAGCAAAAGCTTTAAATCCTCC 59.071 43.478 13.10 0.00 0.00 4.30
243 2519 4.559153 TGCAGCAAAAGCTTTAAATCCTC 58.441 39.130 13.10 0.00 0.00 3.71
244 2520 4.605640 TGCAGCAAAAGCTTTAAATCCT 57.394 36.364 13.10 1.95 0.00 3.24
245 2521 5.640783 AGAATGCAGCAAAAGCTTTAAATCC 59.359 36.000 13.10 2.35 30.66 3.01
246 2522 6.716898 AGAATGCAGCAAAAGCTTTAAATC 57.283 33.333 13.10 2.18 30.66 2.17
247 2523 7.500720 AAAGAATGCAGCAAAAGCTTTAAAT 57.499 28.000 13.10 0.00 30.66 1.40
248 2524 6.923928 AAAGAATGCAGCAAAAGCTTTAAA 57.076 29.167 13.10 0.00 30.66 1.52
249 2525 6.538021 TGAAAAGAATGCAGCAAAAGCTTTAA 59.462 30.769 13.10 0.00 30.66 1.52
250 2526 6.047870 TGAAAAGAATGCAGCAAAAGCTTTA 58.952 32.000 13.10 0.00 30.66 1.85
251 2527 4.877251 TGAAAAGAATGCAGCAAAAGCTTT 59.123 33.333 5.69 5.69 32.83 3.51
252 2528 4.444536 TGAAAAGAATGCAGCAAAAGCTT 58.555 34.783 0.00 0.00 0.00 3.74
253 2529 4.056050 CTGAAAAGAATGCAGCAAAAGCT 58.944 39.130 0.00 0.00 0.00 3.74
254 2530 3.185797 CCTGAAAAGAATGCAGCAAAAGC 59.814 43.478 0.00 0.00 0.00 3.51
255 2531 3.744426 CCCTGAAAAGAATGCAGCAAAAG 59.256 43.478 0.00 0.00 0.00 2.27
256 2532 3.134442 ACCCTGAAAAGAATGCAGCAAAA 59.866 39.130 0.00 0.00 0.00 2.44
257 2533 2.699846 ACCCTGAAAAGAATGCAGCAAA 59.300 40.909 0.00 0.00 0.00 3.68
258 2534 2.318908 ACCCTGAAAAGAATGCAGCAA 58.681 42.857 0.00 0.00 0.00 3.91
259 2535 1.999648 ACCCTGAAAAGAATGCAGCA 58.000 45.000 0.00 0.00 0.00 4.41
260 2536 3.391506 AAACCCTGAAAAGAATGCAGC 57.608 42.857 0.00 0.00 0.00 5.25
261 2537 6.986231 ACTTTAAAACCCTGAAAAGAATGCAG 59.014 34.615 0.00 0.00 33.98 4.41
262 2538 6.883744 ACTTTAAAACCCTGAAAAGAATGCA 58.116 32.000 0.00 0.00 33.98 3.96
263 2539 7.210174 AGACTTTAAAACCCTGAAAAGAATGC 58.790 34.615 0.00 0.00 33.98 3.56
264 2540 8.633561 AGAGACTTTAAAACCCTGAAAAGAATG 58.366 33.333 0.00 0.00 33.98 2.67
265 2541 8.768501 AGAGACTTTAAAACCCTGAAAAGAAT 57.231 30.769 0.00 0.00 33.98 2.40
266 2542 8.466798 CAAGAGACTTTAAAACCCTGAAAAGAA 58.533 33.333 0.00 0.00 33.98 2.52
267 2543 7.068226 CCAAGAGACTTTAAAACCCTGAAAAGA 59.932 37.037 0.00 0.00 33.98 2.52
268 2544 7.203218 CCAAGAGACTTTAAAACCCTGAAAAG 58.797 38.462 0.00 0.00 35.54 2.27
269 2545 6.097696 CCCAAGAGACTTTAAAACCCTGAAAA 59.902 38.462 0.00 0.00 0.00 2.29
270 2546 5.596772 CCCAAGAGACTTTAAAACCCTGAAA 59.403 40.000 0.00 0.00 0.00 2.69
271 2547 5.137551 CCCAAGAGACTTTAAAACCCTGAA 58.862 41.667 0.00 0.00 0.00 3.02
272 2548 4.167307 ACCCAAGAGACTTTAAAACCCTGA 59.833 41.667 0.00 0.00 0.00 3.86
273 2549 4.470602 ACCCAAGAGACTTTAAAACCCTG 58.529 43.478 0.00 0.00 0.00 4.45
274 2550 4.808767 ACCCAAGAGACTTTAAAACCCT 57.191 40.909 0.00 0.00 0.00 4.34
275 2551 5.475909 CCTAACCCAAGAGACTTTAAAACCC 59.524 44.000 0.00 0.00 0.00 4.11
276 2552 6.301486 TCCTAACCCAAGAGACTTTAAAACC 58.699 40.000 0.00 0.00 0.00 3.27
277 2553 7.222161 TCTCCTAACCCAAGAGACTTTAAAAC 58.778 38.462 0.00 0.00 31.80 2.43
278 2554 7.383156 TCTCCTAACCCAAGAGACTTTAAAA 57.617 36.000 0.00 0.00 31.80 1.52
279 2555 7.458170 AGATCTCCTAACCCAAGAGACTTTAAA 59.542 37.037 0.00 0.00 39.36 1.52
280 2556 6.960542 AGATCTCCTAACCCAAGAGACTTTAA 59.039 38.462 0.00 0.00 39.36 1.52
281 2557 6.381420 CAGATCTCCTAACCCAAGAGACTTTA 59.619 42.308 0.00 0.00 39.36 1.85
282 2558 5.188751 CAGATCTCCTAACCCAAGAGACTTT 59.811 44.000 0.00 0.00 39.36 2.66
283 2559 4.714308 CAGATCTCCTAACCCAAGAGACTT 59.286 45.833 0.00 0.00 39.36 3.01
284 2560 4.285863 CAGATCTCCTAACCCAAGAGACT 58.714 47.826 0.00 0.00 39.36 3.24
285 2561 3.181470 GCAGATCTCCTAACCCAAGAGAC 60.181 52.174 0.00 0.00 39.36 3.36
286 2562 3.034635 GCAGATCTCCTAACCCAAGAGA 58.965 50.000 0.00 0.00 40.73 3.10
287 2563 3.037549 AGCAGATCTCCTAACCCAAGAG 58.962 50.000 0.00 0.00 0.00 2.85
288 2564 3.121929 AGCAGATCTCCTAACCCAAGA 57.878 47.619 0.00 0.00 0.00 3.02
289 2565 5.163258 ACATTAGCAGATCTCCTAACCCAAG 60.163 44.000 8.31 0.42 0.00 3.61
290 2566 4.721776 ACATTAGCAGATCTCCTAACCCAA 59.278 41.667 8.31 0.00 0.00 4.12
291 2567 4.298626 ACATTAGCAGATCTCCTAACCCA 58.701 43.478 8.31 0.00 0.00 4.51
292 2568 4.965200 ACATTAGCAGATCTCCTAACCC 57.035 45.455 8.31 0.00 0.00 4.11
293 2569 4.513318 GCAACATTAGCAGATCTCCTAACC 59.487 45.833 8.31 0.00 0.00 2.85
294 2570 4.513318 GGCAACATTAGCAGATCTCCTAAC 59.487 45.833 8.31 0.00 0.00 2.34
295 2571 4.708177 GGCAACATTAGCAGATCTCCTAA 58.292 43.478 8.57 8.57 0.00 2.69
296 2572 3.243873 CGGCAACATTAGCAGATCTCCTA 60.244 47.826 0.00 0.00 0.00 2.94
297 2573 2.484417 CGGCAACATTAGCAGATCTCCT 60.484 50.000 0.00 0.00 0.00 3.69
298 2574 1.869767 CGGCAACATTAGCAGATCTCC 59.130 52.381 0.00 0.00 0.00 3.71
299 2575 1.262683 GCGGCAACATTAGCAGATCTC 59.737 52.381 0.00 0.00 0.00 2.75
300 2576 1.303309 GCGGCAACATTAGCAGATCT 58.697 50.000 0.00 0.00 0.00 2.75
301 2577 0.041839 CGCGGCAACATTAGCAGATC 60.042 55.000 0.00 0.00 0.00 2.75
302 2578 2.016961 CGCGGCAACATTAGCAGAT 58.983 52.632 0.00 0.00 0.00 2.90
303 2579 2.749865 GCGCGGCAACATTAGCAGA 61.750 57.895 8.83 0.00 0.00 4.26
304 2580 2.277501 GCGCGGCAACATTAGCAG 60.278 61.111 8.83 0.00 0.00 4.24
305 2581 3.052686 TGCGCGGCAACATTAGCA 61.053 55.556 8.83 0.00 34.76 3.49
306 2582 2.576847 GTGCGCGGCAACATTAGC 60.577 61.111 8.83 0.00 41.47 3.09
307 2583 0.794229 CTTGTGCGCGGCAACATTAG 60.794 55.000 8.83 0.00 41.47 1.73
308 2584 1.208870 CTTGTGCGCGGCAACATTA 59.791 52.632 8.83 0.00 41.47 1.90
309 2585 2.050168 CTTGTGCGCGGCAACATT 60.050 55.556 8.83 0.00 41.47 2.71
310 2586 2.348605 AAACTTGTGCGCGGCAACAT 62.349 50.000 8.83 2.77 41.47 2.71
311 2587 3.057547 AAACTTGTGCGCGGCAACA 62.058 52.632 8.83 3.70 41.47 3.33
312 2588 2.278531 AAACTTGTGCGCGGCAAC 60.279 55.556 8.83 0.91 41.47 4.17
313 2589 2.278466 CAAACTTGTGCGCGGCAA 60.278 55.556 8.83 14.85 41.47 4.52
314 2590 4.921847 GCAAACTTGTGCGCGGCA 62.922 61.111 8.83 3.20 34.21 5.69
320 2596 3.057526 CCCCTACTTTAGCAAACTTGTGC 60.058 47.826 0.00 0.00 45.28 4.57
321 2597 3.057526 GCCCCTACTTTAGCAAACTTGTG 60.058 47.826 0.00 0.00 0.00 3.33
322 2598 3.154710 GCCCCTACTTTAGCAAACTTGT 58.845 45.455 0.00 0.00 0.00 3.16
323 2599 2.161609 CGCCCCTACTTTAGCAAACTTG 59.838 50.000 0.00 0.00 0.00 3.16
324 2600 2.433436 CGCCCCTACTTTAGCAAACTT 58.567 47.619 0.00 0.00 0.00 2.66
325 2601 1.339727 CCGCCCCTACTTTAGCAAACT 60.340 52.381 0.00 0.00 0.00 2.66
326 2602 1.092348 CCGCCCCTACTTTAGCAAAC 58.908 55.000 0.00 0.00 0.00 2.93
327 2603 0.034863 CCCGCCCCTACTTTAGCAAA 60.035 55.000 0.00 0.00 0.00 3.68
328 2604 0.910566 TCCCGCCCCTACTTTAGCAA 60.911 55.000 0.00 0.00 0.00 3.91
329 2605 1.306312 TCCCGCCCCTACTTTAGCA 60.306 57.895 0.00 0.00 0.00 3.49
330 2606 1.047034 TCTCCCGCCCCTACTTTAGC 61.047 60.000 0.00 0.00 0.00 3.09
331 2607 0.751452 GTCTCCCGCCCCTACTTTAG 59.249 60.000 0.00 0.00 0.00 1.85
332 2608 1.039233 CGTCTCCCGCCCCTACTTTA 61.039 60.000 0.00 0.00 0.00 1.85
333 2609 2.356780 CGTCTCCCGCCCCTACTTT 61.357 63.158 0.00 0.00 0.00 2.66
334 2610 2.758737 CGTCTCCCGCCCCTACTT 60.759 66.667 0.00 0.00 0.00 2.24
335 2611 3.292481 TTCGTCTCCCGCCCCTACT 62.292 63.158 0.00 0.00 36.19 2.57
336 2612 2.757099 TTCGTCTCCCGCCCCTAC 60.757 66.667 0.00 0.00 36.19 3.18
337 2613 1.925285 TAGTTCGTCTCCCGCCCCTA 61.925 60.000 0.00 0.00 36.19 3.53
338 2614 2.584873 ATAGTTCGTCTCCCGCCCCT 62.585 60.000 0.00 0.00 36.19 4.79
339 2615 2.132352 ATAGTTCGTCTCCCGCCCC 61.132 63.158 0.00 0.00 36.19 5.80
340 2616 1.067582 CATAGTTCGTCTCCCGCCC 59.932 63.158 0.00 0.00 36.19 6.13
341 2617 1.027357 TACATAGTTCGTCTCCCGCC 58.973 55.000 0.00 0.00 36.19 6.13
342 2618 2.543238 CCTTACATAGTTCGTCTCCCGC 60.543 54.545 0.00 0.00 36.19 6.13
343 2619 2.686915 ACCTTACATAGTTCGTCTCCCG 59.313 50.000 0.00 0.00 38.13 5.14
344 2620 4.732672 AACCTTACATAGTTCGTCTCCC 57.267 45.455 0.00 0.00 0.00 4.30
345 2621 4.868734 CCAAACCTTACATAGTTCGTCTCC 59.131 45.833 0.00 0.00 0.00 3.71
346 2622 5.476614 ACCAAACCTTACATAGTTCGTCTC 58.523 41.667 0.00 0.00 0.00 3.36
347 2623 5.479124 ACCAAACCTTACATAGTTCGTCT 57.521 39.130 0.00 0.00 0.00 4.18
348 2624 7.092716 TCTAACCAAACCTTACATAGTTCGTC 58.907 38.462 0.00 0.00 0.00 4.20
349 2625 6.996509 TCTAACCAAACCTTACATAGTTCGT 58.003 36.000 0.00 0.00 0.00 3.85
350 2626 7.412672 GCTTCTAACCAAACCTTACATAGTTCG 60.413 40.741 0.00 0.00 0.00 3.95
351 2627 7.606839 AGCTTCTAACCAAACCTTACATAGTTC 59.393 37.037 0.00 0.00 0.00 3.01
352 2628 7.459234 AGCTTCTAACCAAACCTTACATAGTT 58.541 34.615 0.00 0.00 0.00 2.24
353 2629 7.017319 AGCTTCTAACCAAACCTTACATAGT 57.983 36.000 0.00 0.00 0.00 2.12
354 2630 6.539103 GGAGCTTCTAACCAAACCTTACATAG 59.461 42.308 0.00 0.00 0.00 2.23
355 2631 6.412214 GGAGCTTCTAACCAAACCTTACATA 58.588 40.000 0.00 0.00 0.00 2.29
356 2632 5.254115 GGAGCTTCTAACCAAACCTTACAT 58.746 41.667 0.00 0.00 0.00 2.29
357 2633 4.506095 GGGAGCTTCTAACCAAACCTTACA 60.506 45.833 0.00 0.00 0.00 2.41
358 2634 4.008330 GGGAGCTTCTAACCAAACCTTAC 58.992 47.826 0.00 0.00 0.00 2.34
359 2635 3.009805 GGGGAGCTTCTAACCAAACCTTA 59.990 47.826 0.00 0.00 0.00 2.69
360 2636 2.225041 GGGGAGCTTCTAACCAAACCTT 60.225 50.000 0.00 0.00 0.00 3.50
361 2637 1.354705 GGGGAGCTTCTAACCAAACCT 59.645 52.381 0.00 0.00 0.00 3.50
362 2638 1.616187 GGGGGAGCTTCTAACCAAACC 60.616 57.143 0.00 0.00 0.00 3.27
363 2639 1.835494 GGGGGAGCTTCTAACCAAAC 58.165 55.000 0.00 0.00 0.00 2.93
364 2640 0.326927 CGGGGGAGCTTCTAACCAAA 59.673 55.000 0.00 0.00 0.00 3.28
365 2641 1.559065 CCGGGGGAGCTTCTAACCAA 61.559 60.000 0.00 0.00 0.00 3.67
366 2642 1.993391 CCGGGGGAGCTTCTAACCA 60.993 63.158 0.00 0.00 0.00 3.67
367 2643 1.054978 ATCCGGGGGAGCTTCTAACC 61.055 60.000 0.00 0.00 34.05 2.85
368 2644 0.837940 AATCCGGGGGAGCTTCTAAC 59.162 55.000 0.00 0.00 34.05 2.34
369 2645 1.591768 AAATCCGGGGGAGCTTCTAA 58.408 50.000 0.00 0.00 34.05 2.10
370 2646 1.211949 CAAAATCCGGGGGAGCTTCTA 59.788 52.381 0.00 0.00 34.05 2.10
371 2647 0.034089 CAAAATCCGGGGGAGCTTCT 60.034 55.000 0.00 0.00 34.05 2.85
372 2648 0.323451 ACAAAATCCGGGGGAGCTTC 60.323 55.000 0.00 0.00 34.05 3.86
373 2649 0.114364 AACAAAATCCGGGGGAGCTT 59.886 50.000 0.00 0.00 34.05 3.74
374 2650 0.323451 GAACAAAATCCGGGGGAGCT 60.323 55.000 0.00 0.00 34.05 4.09
375 2651 0.323451 AGAACAAAATCCGGGGGAGC 60.323 55.000 0.00 0.00 34.05 4.70
376 2652 1.818674 CAAGAACAAAATCCGGGGGAG 59.181 52.381 0.00 0.00 34.05 4.30
377 2653 1.425831 TCAAGAACAAAATCCGGGGGA 59.574 47.619 0.00 0.00 35.55 4.81
378 2654 1.917872 TCAAGAACAAAATCCGGGGG 58.082 50.000 0.00 0.00 0.00 5.40
379 2655 2.825532 ACATCAAGAACAAAATCCGGGG 59.174 45.455 0.00 0.00 0.00 5.73
380 2656 5.637006 TTACATCAAGAACAAAATCCGGG 57.363 39.130 0.00 0.00 0.00 5.73
381 2657 7.008266 CGAAATTACATCAAGAACAAAATCCGG 59.992 37.037 0.00 0.00 0.00 5.14
382 2658 7.008266 CCGAAATTACATCAAGAACAAAATCCG 59.992 37.037 0.00 0.00 0.00 4.18
383 2659 8.026607 TCCGAAATTACATCAAGAACAAAATCC 58.973 33.333 0.00 0.00 0.00 3.01
384 2660 8.964420 TCCGAAATTACATCAAGAACAAAATC 57.036 30.769 0.00 0.00 0.00 2.17
385 2661 9.357652 CATCCGAAATTACATCAAGAACAAAAT 57.642 29.630 0.00 0.00 0.00 1.82
386 2662 8.572185 TCATCCGAAATTACATCAAGAACAAAA 58.428 29.630 0.00 0.00 0.00 2.44
387 2663 8.020819 GTCATCCGAAATTACATCAAGAACAAA 58.979 33.333 0.00 0.00 0.00 2.83
388 2664 7.174080 TGTCATCCGAAATTACATCAAGAACAA 59.826 33.333 0.00 0.00 0.00 2.83
389 2665 6.652900 TGTCATCCGAAATTACATCAAGAACA 59.347 34.615 0.00 0.00 0.00 3.18
390 2666 7.072177 TGTCATCCGAAATTACATCAAGAAC 57.928 36.000 0.00 0.00 0.00 3.01
391 2667 7.864108 ATGTCATCCGAAATTACATCAAGAA 57.136 32.000 0.00 0.00 0.00 2.52
392 2668 7.012327 GGAATGTCATCCGAAATTACATCAAGA 59.988 37.037 0.00 0.00 30.70 3.02
393 2669 7.134815 GGAATGTCATCCGAAATTACATCAAG 58.865 38.462 0.00 0.00 30.70 3.02
394 2670 6.601217 TGGAATGTCATCCGAAATTACATCAA 59.399 34.615 0.00 0.00 35.13 2.57
395 2671 6.118852 TGGAATGTCATCCGAAATTACATCA 58.881 36.000 0.00 0.00 35.13 3.07
396 2672 6.618287 TGGAATGTCATCCGAAATTACATC 57.382 37.500 0.00 0.00 35.13 3.06
397 2673 7.122650 AGTTTGGAATGTCATCCGAAATTACAT 59.877 33.333 0.00 0.00 39.12 2.29
398 2674 6.432783 AGTTTGGAATGTCATCCGAAATTACA 59.567 34.615 0.00 0.00 43.04 2.41
399 2675 6.852664 AGTTTGGAATGTCATCCGAAATTAC 58.147 36.000 0.00 0.00 43.04 1.89
400 2676 7.201574 CGTAGTTTGGAATGTCATCCGAAATTA 60.202 37.037 2.03 0.00 43.04 1.40
401 2677 5.982890 AGTTTGGAATGTCATCCGAAATT 57.017 34.783 0.00 0.00 43.04 1.82
402 2678 5.064707 CGTAGTTTGGAATGTCATCCGAAAT 59.935 40.000 2.30 2.30 43.04 2.17
403 2679 4.390603 CGTAGTTTGGAATGTCATCCGAAA 59.609 41.667 0.00 0.00 43.04 3.46
404 2680 3.930229 CGTAGTTTGGAATGTCATCCGAA 59.070 43.478 0.00 0.00 42.76 4.30
405 2681 3.056393 ACGTAGTTTGGAATGTCATCCGA 60.056 43.478 0.00 0.00 37.78 4.55
406 2682 3.062099 CACGTAGTTTGGAATGTCATCCG 59.938 47.826 0.00 0.00 41.61 4.18
407 2683 4.000988 ACACGTAGTTTGGAATGTCATCC 58.999 43.478 0.00 0.00 41.61 3.51
408 2684 5.607119 AACACGTAGTTTGGAATGTCATC 57.393 39.130 0.00 0.00 41.61 2.92
420 2696 5.852755 GCCGCTTTATTTAAAACACGTAGTT 59.147 36.000 0.00 0.00 41.61 2.24
422 2698 5.383958 TGCCGCTTTATTTAAAACACGTAG 58.616 37.500 0.00 0.00 0.00 3.51
423 2699 5.049543 ACTGCCGCTTTATTTAAAACACGTA 60.050 36.000 0.00 0.00 0.00 3.57
424 2700 4.223659 CTGCCGCTTTATTTAAAACACGT 58.776 39.130 0.00 0.00 0.00 4.49
425 2701 4.223659 ACTGCCGCTTTATTTAAAACACG 58.776 39.130 0.00 0.00 0.00 4.49
426 2702 7.806149 AATACTGCCGCTTTATTTAAAACAC 57.194 32.000 0.00 0.00 0.00 3.32
427 2703 8.301002 AGAAATACTGCCGCTTTATTTAAAACA 58.699 29.630 8.79 0.00 0.00 2.83
428 2704 8.683550 AGAAATACTGCCGCTTTATTTAAAAC 57.316 30.769 8.79 0.73 0.00 2.43
429 2705 7.971722 GGAGAAATACTGCCGCTTTATTTAAAA 59.028 33.333 8.79 0.00 0.00 1.52
430 2706 7.415877 GGGAGAAATACTGCCGCTTTATTTAAA 60.416 37.037 8.79 0.00 46.44 1.52
431 2707 6.038936 GGGAGAAATACTGCCGCTTTATTTAA 59.961 38.462 8.79 0.00 46.44 1.52
432 2708 5.529800 GGGAGAAATACTGCCGCTTTATTTA 59.470 40.000 8.79 0.00 46.44 1.40
433 2709 4.338400 GGGAGAAATACTGCCGCTTTATTT 59.662 41.667 8.64 8.64 46.44 1.40
434 2710 3.883489 GGGAGAAATACTGCCGCTTTATT 59.117 43.478 0.00 0.00 46.44 1.40
435 2711 3.477530 GGGAGAAATACTGCCGCTTTAT 58.522 45.455 0.00 0.00 46.44 1.40
436 2712 2.914059 GGGAGAAATACTGCCGCTTTA 58.086 47.619 0.00 0.00 46.44 1.85
437 2713 1.751437 GGGAGAAATACTGCCGCTTT 58.249 50.000 0.00 0.00 46.44 3.51
438 2714 3.478540 GGGAGAAATACTGCCGCTT 57.521 52.632 0.00 0.00 46.44 4.68
463 2739 6.074648 TGGACTTGGATAATGGACAGTTTTT 58.925 36.000 0.00 0.00 0.00 1.94
464 2740 5.640147 TGGACTTGGATAATGGACAGTTTT 58.360 37.500 0.00 0.00 0.00 2.43
465 2741 5.255397 TGGACTTGGATAATGGACAGTTT 57.745 39.130 0.00 0.00 0.00 2.66
466 2742 4.927267 TGGACTTGGATAATGGACAGTT 57.073 40.909 0.00 0.00 0.00 3.16
467 2743 5.044919 TCAATGGACTTGGATAATGGACAGT 60.045 40.000 0.00 0.00 35.43 3.55
468 2744 5.297776 GTCAATGGACTTGGATAATGGACAG 59.702 44.000 0.00 0.00 40.99 3.51
469 2745 5.192927 GTCAATGGACTTGGATAATGGACA 58.807 41.667 0.00 0.00 40.99 4.02
470 2746 5.757850 GTCAATGGACTTGGATAATGGAC 57.242 43.478 0.00 0.00 40.99 4.02
567 2843 8.635765 AGAAGCCTATGTAGTGATTTCAAAAA 57.364 30.769 0.00 0.00 0.00 1.94
568 2844 8.514594 CAAGAAGCCTATGTAGTGATTTCAAAA 58.485 33.333 0.00 0.00 0.00 2.44
569 2845 7.882791 TCAAGAAGCCTATGTAGTGATTTCAAA 59.117 33.333 0.00 0.00 0.00 2.69
570 2846 7.394016 TCAAGAAGCCTATGTAGTGATTTCAA 58.606 34.615 0.00 0.00 0.00 2.69
571 2847 6.946340 TCAAGAAGCCTATGTAGTGATTTCA 58.054 36.000 0.00 0.00 0.00 2.69
572 2848 8.983724 GTATCAAGAAGCCTATGTAGTGATTTC 58.016 37.037 0.00 0.00 0.00 2.17
573 2849 8.486210 TGTATCAAGAAGCCTATGTAGTGATTT 58.514 33.333 0.00 0.00 0.00 2.17
574 2850 7.928706 GTGTATCAAGAAGCCTATGTAGTGATT 59.071 37.037 0.00 0.00 0.00 2.57
575 2851 7.069950 TGTGTATCAAGAAGCCTATGTAGTGAT 59.930 37.037 0.00 0.00 0.00 3.06
576 2852 6.379988 TGTGTATCAAGAAGCCTATGTAGTGA 59.620 38.462 0.00 0.00 0.00 3.41
577 2853 6.573434 TGTGTATCAAGAAGCCTATGTAGTG 58.427 40.000 0.00 0.00 0.00 2.74
652 2940 0.824595 TCCTCCTCGAACGTGGACAA 60.825 55.000 12.82 3.23 34.54 3.18
941 3239 6.811665 TCACGTAGTACATTTTGAAGGATCTG 59.188 38.462 0.38 0.00 41.61 2.90
959 3257 3.446161 TCCCTCACTACCAAATCACGTAG 59.554 47.826 0.00 0.00 38.34 3.51
960 3258 3.194116 GTCCCTCACTACCAAATCACGTA 59.806 47.826 0.00 0.00 0.00 3.57
961 3259 2.028385 GTCCCTCACTACCAAATCACGT 60.028 50.000 0.00 0.00 0.00 4.49
962 3260 2.618053 GTCCCTCACTACCAAATCACG 58.382 52.381 0.00 0.00 0.00 4.35
967 3265 1.263356 CTCCGTCCCTCACTACCAAA 58.737 55.000 0.00 0.00 0.00 3.28
1029 3327 2.034687 TGCCTCAGCTTCTTGGGC 59.965 61.111 0.00 0.00 42.73 5.36
1082 3380 1.924320 CTTCTCTTCGCCGTCTCCGT 61.924 60.000 0.00 0.00 0.00 4.69
1101 3399 2.887568 CGGCTGATGTGGTCGAGC 60.888 66.667 7.89 7.89 33.18 5.03
1697 4675 9.111613 GGTAGTAAGATACATAGACAGCGATAT 57.888 37.037 0.00 0.00 0.00 1.63
1770 4748 3.091545 TGGGATCAATCTTTCAAGGCAC 58.908 45.455 0.00 0.00 0.00 5.01
2050 5030 1.210931 CCTTCACTGTGCGCATTGG 59.789 57.895 15.91 9.61 0.00 3.16
2242 5231 5.652014 CCAACTAGGCATCCATAAAGACAAA 59.348 40.000 0.00 0.00 0.00 2.83
2251 5240 3.716353 TGTATGTCCAACTAGGCATCCAT 59.284 43.478 0.00 0.00 36.18 3.41
2327 5338 6.017440 GCTGTTTTGACCACTACATCTGTTAA 60.017 38.462 0.00 0.00 0.00 2.01
2586 5625 7.803487 AGGATCAATGAGTATGTCATATGGA 57.197 36.000 2.13 0.00 45.89 3.41
2624 5663 3.786635 ACGATTGCACTTAGATGGAGAC 58.213 45.455 0.00 0.00 0.00 3.36
2634 5673 7.254319 CGATAGGTGTTTATTACGATTGCACTT 60.254 37.037 0.00 0.00 0.00 3.16
2637 5676 6.274579 TCGATAGGTGTTTATTACGATTGCA 58.725 36.000 0.00 0.00 0.00 4.08
2670 5750 3.005791 ACTTGGCAAAGTTAACATCTGGC 59.994 43.478 8.61 13.49 44.47 4.85
3028 7734 7.678194 TTTCAAATAGAAAAGTTGTGCGAAG 57.322 32.000 0.00 0.00 43.00 3.79
3182 11308 6.994496 TGAGCTATCAAAGGAATAACCATCAG 59.006 38.462 0.00 0.00 34.96 2.90
3367 11616 8.986477 AATATGCTAACAAAATGTTCCAACTC 57.014 30.769 0.00 0.00 40.22 3.01
3406 11655 8.411991 AGACAAATAGTATAGCTCCTTCCTAC 57.588 38.462 0.00 0.00 0.00 3.18
3512 11761 9.938670 TGCATATTCCACATTAAAAATACGTAC 57.061 29.630 0.00 0.00 0.00 3.67
3608 11861 4.831107 ACTTTGTCAAGCCAAAACACAAT 58.169 34.783 0.00 0.00 34.15 2.71
3609 11862 4.264460 ACTTTGTCAAGCCAAAACACAA 57.736 36.364 0.00 0.00 34.15 3.33
3688 11941 0.460284 ACCATGTAAAGCTCGCGAGG 60.460 55.000 35.10 19.66 0.00 4.63
3694 11947 6.505272 ACGACTAATCTACCATGTAAAGCTC 58.495 40.000 0.00 0.00 0.00 4.09
3862 12115 3.560068 GGGAGAATTACTAACATGCCACG 59.440 47.826 0.00 0.00 0.00 4.94
3899 12152 0.395311 ACCGGAGATGAAGCGGACTA 60.395 55.000 9.46 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.