AutoCloner

Multiple sequence alignment - TraesCS5D01G362300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G362300	chr5D	100.000	5057	0	0	1	5057	441024157	441019101	0.000000e+00	9339.0
1	TraesCS5D01G362300	chr5B	95.022	4460	165	17	629	5057	536590193	536585760	0.000000e+00	6953.0
2	TraesCS5D01G362300	chr5B	91.264	641	32	9	1	621	536591347	536590711	0.000000e+00	852.0
3	TraesCS5D01G362300	chr5B	91.509	318	26	1	1638	1955	50653748	50654064	2.160000e-118	436.0
4	TraesCS5D01G362300	chr5B	97.115	104	3	0	1427	1530	50653653	50653756	5.200000e-40	176.0
5	TraesCS5D01G362300	chr5B	90.164	122	12	0	1439	1560	511469226	511469105	5.240000e-35	159.0
6	TraesCS5D01G362300	chr5A	94.163	3255	144	18	555	3776	557130217	557126976	0.000000e+00	4916.0
7	TraesCS5D01G362300	chr5A	94.508	1220	42	10	3857	5057	557126978	557125765	0.000000e+00	1858.0
8	TraesCS5D01G362300	chr5A	90.303	330	24	7	1	324	557130841	557130514	4.680000e-115	425.0
9	TraesCS5D01G362300	chr5A	100.000	29	0	0	4565	4593	557126222	557126194	3.000000e-03	54.7
10	TraesCS5D01G362300	chr4D	94.061	522	31	0	1427	1948	503796429	503795908	0.000000e+00	793.0
11	TraesCS5D01G362300	chr6A	86.375	389	41	5	1562	1949	52324031	52323654	1.010000e-111	414.0
12	TraesCS5D01G362300	chr6A	86.118	389	42	5	1562	1949	52329348	52328971	4.710000e-110	409.0
13	TraesCS5D01G362300	chr6A	92.857	266	19	0	1683	1948	16649662	16649397	2.210000e-103	387.0
14	TraesCS5D01G362300	chr6A	96.667	60	1	1	1473	1531	52324164	52324105	1.160000e-16	99.0
15	TraesCS5D01G362300	chr6A	96.667	60	1	1	1473	1531	52329481	52329422	1.160000e-16	99.0
16	TraesCS5D01G362300	chr2B	89.850	266	27	0	1683	1948	526519327	526519592	4.850000e-90	342.0
17	TraesCS5D01G362300	chr3D	94.000	100	3	3	3774	3872	22679145	22679048	1.130000e-31	148.0
18	TraesCS5D01G362300	chr3D	94.000	100	3	3	3774	3872	22767813	22767910	1.130000e-31	148.0
19	TraesCS5D01G362300	chr3D	97.647	85	2	0	3775	3859	436676984	436676900	4.080000e-31	147.0
20	TraesCS5D01G362300	chr6D	96.552	87	3	0	3773	3859	299191349	299191263	1.470000e-30	145.0
21	TraesCS5D01G362300	chr4A	94.624	93	5	0	3770	3862	9380764	9380672	1.470000e-30	145.0
22	TraesCS5D01G362300	chr4B	95.556	90	3	1	3775	3864	631527860	631527772	5.280000e-30	143.0
23	TraesCS5D01G362300	chr4B	93.548	93	6	0	3767	3859	20800499	20800591	6.830000e-29	139.0
24	TraesCS5D01G362300	chr1B	96.512	86	3	0	3775	3860	510799178	510799093	5.280000e-30	143.0
25	TraesCS5D01G362300	chr6B	87.611	113	14	0	1683	1795	688752059	688752171	1.140000e-26	132.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G362300	chr5D	441019101	441024157	5056	True	9339.000	9339	100.0000	1	5057	1	chr5D.!!$R1	5056
1	TraesCS5D01G362300	chr5B	536585760	536591347	5587	True	3902.500	6953	93.1430	1	5057	2	chr5B.!!$R2	5056
2	TraesCS5D01G362300	chr5A	557125765	557130841	5076	True	1813.425	4916	94.7435	1	5057	4	chr5A.!!$R1	5056
3	TraesCS5D01G362300	chr4D	503795908	503796429	521	True	793.000	793	94.0610	1427	1948	1	chr4D.!!$R1	521
4	TraesCS5D01G362300	chr6A	52323654	52324164	510	True	256.500	414	91.5210	1473	1949	2	chr6A.!!$R2	476
5	TraesCS5D01G362300	chr6A	52328971	52329481	510	True	254.000	409	91.3925	1473	1949	2	chr6A.!!$R3	476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
615	698	0.322546	ACGGGGCAATCTGGTCTTTC	60.323	55.0	0.00	2.62	F
704	1300	1.016627	AATCACATGATCCGTTGGCG	58.983	50.0	32.75	5.69	F
913	1521	1.129058	ACTTCACCTTCTTGTCCCGT	58.871	50.0	0.00	5.28	F
2157	2814	0.336048	AGGAGCAGAAGAGAGAGCCT	59.664	55.0	0.00	4.58	F
2158	2815	0.461135	GGAGCAGAAGAGAGAGCCTG	59.539	60.0	0.00	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1935	2586	0.990374	AGGATGAGGCAGCAGTCTTT	59.010	50.000	0.00	0.0	2.52	R
1979	2630	1.074752	CGTCTTGCTCTGCTTCCTTC	58.925	55.000	0.00	0.0	3.46	R
2910	3576	1.435105	CTCGAAGGCGATCTGCTCA	59.565	57.895	8.94	46.8	4.26	R
3848	4521	0.684805	ACTTCCTGCTACTCCCTCCG	60.685	60.000	0.00	0.0	4.63	R
4132	4815	1.605232	TGCATGCAAATGATCGGCTAG	59.395	47.619	20.30	0.0	3.42	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
178	179	0.746063	CTTTGTGCCAGCCTTGTTCA	59.254	50.000	0.00	0.00	0.00	3.18
193	194	3.096489	TGTTCAGCATTTTCCTTGCAC	57.904	42.857	0.00	0.00	42.62	4.57
259	265	9.316859	GCAATAACAGAAAATAAAAACACATGC	57.683	29.630	0.00	0.00	0.00	4.06
330	337	1.080298	GCCAAGCATTGTGTCTGGC	60.080	57.895	8.11	8.11	46.99	4.85
342	349	0.545309	TGTCTGGCTGCTAGTTCCCT	60.545	55.000	12.90	0.00	0.00	4.20
346	353	2.087646	CTGGCTGCTAGTTCCCTTTTC	58.912	52.381	4.68	0.00	0.00	2.29
348	355	2.290323	TGGCTGCTAGTTCCCTTTTCTC	60.290	50.000	0.00	0.00	0.00	2.87
349	356	2.360844	GCTGCTAGTTCCCTTTTCTCC	58.639	52.381	0.00	0.00	0.00	3.71
370	418	2.099592	CCTTCAGTTTCAAAGCTGCACA	59.900	45.455	1.02	0.00	37.20	4.57
386	434	1.493772	CACATGCACTGCCAAGTTTG	58.506	50.000	0.00	0.00	32.98	2.93
396	444	4.000325	ACTGCCAAGTTTGTTTTGGAAAC	59.000	39.130	8.13	0.00	46.42	2.78
400	448	3.181525	CCAAGTTTGTTTTGGAAACGCAC	60.182	43.478	0.00	0.00	46.42	5.34
435	484	6.655078	TGTAGCATGTAGAGATCATAAGCA	57.345	37.500	0.00	0.00	0.00	3.91
436	485	6.685657	TGTAGCATGTAGAGATCATAAGCAG	58.314	40.000	0.00	0.00	0.00	4.24
438	487	5.782047	AGCATGTAGAGATCATAAGCAGTC	58.218	41.667	0.00	0.00	0.00	3.51
469	518	3.320541	TCATTTGCCACTTTGGTTTCGAT	59.679	39.130	0.00	0.00	40.46	3.59
483	532	8.850454	TTTGGTTTCGATGAACTTTTTAGAAG	57.150	30.769	0.35	0.00	0.00	2.85
564	646	8.635765	TCCACAGTAGCTAATTCAAATTTTCT	57.364	30.769	0.00	0.00	0.00	2.52
565	647	8.514594	TCCACAGTAGCTAATTCAAATTTTCTG	58.485	33.333	0.00	0.00	0.00	3.02
567	649	9.897744	CACAGTAGCTAATTCAAATTTTCTGAA	57.102	29.630	0.00	0.00	37.22	3.02
570	652	9.578439	AGTAGCTAATTCAAATTTTCTGAATGC	57.422	29.630	0.00	5.48	41.56	3.56
571	653	9.578439	GTAGCTAATTCAAATTTTCTGAATGCT	57.422	29.630	15.16	15.16	41.56	3.79
573	655	9.578439	AGCTAATTCAAATTTTCTGAATGCTAC	57.422	29.630	11.57	2.41	41.56	3.58
574	656	9.578439	GCTAATTCAAATTTTCTGAATGCTACT	57.422	29.630	4.93	0.00	41.56	2.57
579	661	8.268850	TCAAATTTTCTGAATGCTACTAGGTC	57.731	34.615	0.00	0.00	0.00	3.85
580	662	7.336931	TCAAATTTTCTGAATGCTACTAGGTCC	59.663	37.037	0.00	0.00	0.00	4.46
581	663	5.755409	TTTTCTGAATGCTACTAGGTCCA	57.245	39.130	0.00	0.00	0.00	4.02
587	669	2.781681	TGCTACTAGGTCCAAAAGGC	57.218	50.000	0.00	0.00	0.00	4.35
590	673	1.553704	CTACTAGGTCCAAAAGGCGGT	59.446	52.381	0.00	0.00	0.00	5.68
615	698	0.322546	ACGGGGCAATCTGGTCTTTC	60.323	55.000	0.00	0.00	0.00	2.62
618	701	2.421388	CGGGGCAATCTGGTCTTTCATA	60.421	50.000	0.00	0.00	0.00	2.15
619	702	3.748668	CGGGGCAATCTGGTCTTTCATAT	60.749	47.826	0.00	0.00	0.00	1.78
648	1242	9.283768	TGTTTCAGAATAATAAAGAGACAAGCA	57.716	29.630	0.00	0.00	0.00	3.91
671	1266	8.207521	GCATAGAGCATTATCCTCTAAAATCC	57.792	38.462	0.00	0.00	43.10	3.01
672	1268	7.826252	GCATAGAGCATTATCCTCTAAAATCCA	59.174	37.037	0.00	0.00	43.10	3.41
704	1300	1.016627	AATCACATGATCCGTTGGCG	58.983	50.000	0.00	0.00	32.75	5.69
847	1455	1.618888	CCTCCCGAGTACCTCCAAAGA	60.619	57.143	0.00	0.00	0.00	2.52
910	1518	2.614057	CACACACTTCACCTTCTTGTCC	59.386	50.000	0.00	0.00	0.00	4.02
913	1521	1.129058	ACTTCACCTTCTTGTCCCGT	58.871	50.000	0.00	0.00	0.00	5.28
928	1536	2.496470	GTCCCGTCTTATCCACACTCTT	59.504	50.000	0.00	0.00	0.00	2.85
929	1537	2.496070	TCCCGTCTTATCCACACTCTTG	59.504	50.000	0.00	0.00	0.00	3.02
1257	1865	2.261361	CGCCTGTCCATGACGTCA	59.739	61.111	22.48	22.48	34.95	4.35
1560	2211	3.181967	CGCAAGAAGGAGTCGCGG	61.182	66.667	6.13	0.00	42.13	6.46
1710	2361	3.382832	CGGCCGTTCCTCCTGTCT	61.383	66.667	19.50	0.00	0.00	3.41
1714	2365	1.816863	GCCGTTCCTCCTGTCTGTGA	61.817	60.000	0.00	0.00	0.00	3.58
1979	2630	3.031457	TTCGTCGGCGTTGTTCGG	61.031	61.111	10.18	0.00	40.26	4.30
2016	2667	1.068748	ACGTCGTTTAGCATCACGAGT	60.069	47.619	4.70	3.66	45.68	4.18
2157	2814	0.336048	AGGAGCAGAAGAGAGAGCCT	59.664	55.000	0.00	0.00	0.00	4.58
2158	2815	0.461135	GGAGCAGAAGAGAGAGCCTG	59.539	60.000	0.00	0.00	0.00	4.85
2159	2816	1.473258	GAGCAGAAGAGAGAGCCTGA	58.527	55.000	0.00	0.00	0.00	3.86
2160	2817	1.406539	GAGCAGAAGAGAGAGCCTGAG	59.593	57.143	0.00	0.00	0.00	3.35
2161	2818	0.461135	GCAGAAGAGAGAGCCTGAGG	59.539	60.000	0.00	0.00	0.00	3.86
2340	3006	1.630878	GATGAGGTGGTCAAGGAGGTT	59.369	52.381	0.00	0.00	39.19	3.50
2763	3429	3.458163	CCCAAGCTGGCCATGCAG	61.458	66.667	23.46	16.62	35.79	4.41
3102	3768	2.660206	CCGGTGACCGTGGATGAA	59.340	61.111	23.73	0.00	46.80	2.57
3333	3999	3.112205	GCTGAGGGATCCCATGCGT	62.112	63.158	32.69	11.80	38.92	5.24
3459	4125	2.747460	GGCATGCGGCTGAAGACA	60.747	61.111	12.44	0.00	44.01	3.41
3736	4409	4.035091	TGAAACACTTCTTCATGTTCCACG	59.965	41.667	0.00	0.00	38.08	4.94
3796	4469	9.319143	CTTGTACTCCCTCTGTAAAGAAATATG	57.681	37.037	0.00	0.00	0.00	1.78
3817	4490	9.956640	AATATGAGAGCATTTAGATCCCTAAAG	57.043	33.333	0.00	0.00	45.07	1.85
3831	4504	7.942990	AGATCCCTAAAGTAGTGATCTAAACG	58.057	38.462	8.07	0.00	44.60	3.60
4024	4704	9.712305	CTTACCCCTGAATATAGTGTAAATGAG	57.288	37.037	0.00	0.00	0.00	2.90
4132	4815	7.639039	TCGCAACATTATTTACAATGGATCTC	58.361	34.615	0.00	0.00	39.71	2.75
4142	4825	3.234353	ACAATGGATCTCTAGCCGATCA	58.766	45.455	17.90	8.93	39.17	2.92
4176	4859	6.638063	CACGACAAAATGACATTTTCTCACAT	59.362	34.615	20.73	7.16	40.27	3.21
4370	5063	2.093310	CACACTCGTCATGATCAGCAAC	59.907	50.000	0.00	0.00	0.00	4.17
4560	5253	4.000331	TCCACAAGAGAGCTTTCAAGAG	58.000	45.455	7.06	0.00	30.14	2.85
4614	5307	5.408604	AGAGCTACCAACAACAGAAAATACG	59.591	40.000	0.00	0.00	0.00	3.06
4866	5560	8.592809	TGAAATTAACTAATTTGTTGGCTGGAT	58.407	29.630	14.41	0.00	43.67	3.41
4884	5578	2.229302	GGATAGGTACAGTCGCATCCTC	59.771	54.545	0.00	0.00	31.23	3.71
4995	5689	2.865119	TATATCCAGCCAGGCATGTG	57.135	50.000	15.80	2.75	37.29	3.21

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
178	179	1.609208	ACTCGTGCAAGGAAAATGCT	58.391	45.000	0.00	0.00	44.14	3.79
288	295	6.456988	GCAGACTTTTATTACCTCAACCATCG	60.457	42.308	0.00	0.00	0.00	3.84
330	337	2.573915	AGGGAGAAAAGGGAACTAGCAG	59.426	50.000	0.00	0.00	42.68	4.24
342	349	4.956075	AGCTTTGAAACTGAAGGGAGAAAA	59.044	37.500	0.00	0.00	0.00	2.29
346	353	2.030451	GCAGCTTTGAAACTGAAGGGAG	60.030	50.000	10.31	0.00	35.90	4.30
348	355	1.682854	TGCAGCTTTGAAACTGAAGGG	59.317	47.619	10.31	0.00	35.90	3.95
349	356	2.099592	TGTGCAGCTTTGAAACTGAAGG	59.900	45.455	10.31	0.00	35.90	3.46
370	418	2.937799	CAAAACAAACTTGGCAGTGCAT	59.062	40.909	18.61	0.00	31.60	3.96
386	434	0.920664	GTGCAGTGCGTTTCCAAAAC	59.079	50.000	11.20	0.00	0.00	2.43
396	444	1.157257	TACAACCACAGTGCAGTGCG	61.157	55.000	21.57	12.15	38.18	5.34
400	448	1.198408	CATGCTACAACCACAGTGCAG	59.802	52.381	0.00	0.00	33.87	4.41
435	484	1.970640	GGCAAATGAACCCCAAAGACT	59.029	47.619	0.00	0.00	0.00	3.24
436	485	1.691434	TGGCAAATGAACCCCAAAGAC	59.309	47.619	0.00	0.00	0.00	3.01
438	487	1.693606	AGTGGCAAATGAACCCCAAAG	59.306	47.619	0.00	0.00	0.00	2.77
469	518	9.131791	GGCCAATATATCCTTCTAAAAAGTTCA	57.868	33.333	0.00	0.00	0.00	3.18
483	532	3.758554	ACATTCTTGCGGCCAATATATCC	59.241	43.478	2.24	0.00	0.00	2.59
564	646	4.843728	CCTTTTGGACCTAGTAGCATTCA	58.156	43.478	0.00	0.00	44.07	2.57
565	647	3.628032	GCCTTTTGGACCTAGTAGCATTC	59.372	47.826	0.00	0.00	44.07	2.67
567	649	2.420129	CGCCTTTTGGACCTAGTAGCAT	60.420	50.000	0.00	0.00	44.07	3.79
569	651	1.653151	CGCCTTTTGGACCTAGTAGC	58.347	55.000	0.00	0.00	44.07	3.58
570	652	1.553704	ACCGCCTTTTGGACCTAGTAG	59.446	52.381	0.00	0.00	44.07	2.57
571	653	1.276989	CACCGCCTTTTGGACCTAGTA	59.723	52.381	0.00	0.00	44.07	1.82
572	654	0.036306	CACCGCCTTTTGGACCTAGT	59.964	55.000	0.00	0.00	44.07	2.57
573	655	1.305930	GCACCGCCTTTTGGACCTAG	61.306	60.000	0.00	0.00	44.07	3.02
574	656	1.302993	GCACCGCCTTTTGGACCTA	60.303	57.895	0.00	0.00	44.07	3.08
593	676	2.046314	ACCAGATTGCCCCGTTCG	60.046	61.111	0.00	0.00	0.00	3.95
638	721	5.543405	AGGATAATGCTCTATGCTTGTCTCT	59.457	40.000	0.00	0.00	43.37	3.10
648	1242	9.902684	CATGGATTTTAGAGGATAATGCTCTAT	57.097	33.333	0.00	0.00	44.92	1.98
671	1266	8.188799	GGATCATGTGATTGGATAAATAGCATG	58.811	37.037	0.00	0.00	39.44	4.06
672	1268	7.066645	CGGATCATGTGATTGGATAAATAGCAT	59.933	37.037	0.00	0.00	34.37	3.79
821	1429	1.761271	GGTACTCGGGAGGGGAAGG	60.761	68.421	0.00	0.00	31.41	3.46
822	1430	1.310373	AGGTACTCGGGAGGGGAAG	59.690	63.158	0.00	0.00	31.41	3.46
823	1431	3.529412	AGGTACTCGGGAGGGGAA	58.471	61.111	0.00	0.00	31.41	3.97
847	1455	4.119363	ATGGCTGGCTGGCGACAT	62.119	61.111	13.03	8.20	45.14	3.06
910	1518	2.093973	AGCAAGAGTGTGGATAAGACGG	60.094	50.000	0.00	0.00	0.00	4.79
913	1521	4.026744	AGCTAGCAAGAGTGTGGATAAGA	58.973	43.478	18.83	0.00	0.00	2.10
929	1537	0.037326	TGTAGTGTGGTGCAGCTAGC	60.037	55.000	18.08	6.62	45.96	3.42
975	1583	2.866028	GCAAGCAGCTCGTGAAGG	59.134	61.111	0.00	0.00	41.15	3.46
1122	1730	2.668212	TTGCTGTGCGCCTGGTAC	60.668	61.111	4.18	0.00	38.05	3.34
1605	2256	2.100603	GTCTCCTCGAAGTCCGCG	59.899	66.667	0.00	0.00	38.37	6.46
1635	2286	4.175599	CTGCAGTAGACGTGGCAG	57.824	61.111	5.25	0.00	46.47	4.85
1695	2346	1.374758	CACAGACAGGAGGAACGGC	60.375	63.158	0.00	0.00	0.00	5.68
1741	2392	4.680237	CACCGTGCTCTGGCCGAA	62.680	66.667	0.00	0.00	37.74	4.30
1764	2415	3.302347	CTCCTTCACGAGGGCGCTT	62.302	63.158	7.64	0.00	46.31	4.68
1935	2586	0.990374	AGGATGAGGCAGCAGTCTTT	59.010	50.000	0.00	0.00	0.00	2.52
1979	2630	1.074752	CGTCTTGCTCTGCTTCCTTC	58.925	55.000	0.00	0.00	0.00	3.46
2016	2667	2.577059	GATCGCGTGACCTTGGGA	59.423	61.111	5.77	0.00	0.00	4.37
2129	2780	3.907260	TTCTGCTCCTGCTTGGGCG	62.907	63.158	0.00	0.00	42.25	6.13
2373	3039	2.725312	GGTGATCGCCTCCAGCTCA	61.725	63.158	18.40	0.00	40.39	4.26
2814	3480	1.734477	CAGTCGCTGGAACACCTCG	60.734	63.158	0.00	0.00	0.00	4.63
2910	3576	1.435105	CTCGAAGGCGATCTGCTCA	59.565	57.895	8.94	0.00	46.80	4.26
2937	3603	2.736236	GCGCTGATGATCGCCGAT	60.736	61.111	0.00	0.00	45.01	4.18
3099	3765	1.019278	GCGAGAACGGCAGGATTTCA	61.019	55.000	0.00	0.00	40.15	2.69
3102	3768	1.448540	CAGCGAGAACGGCAGGATT	60.449	57.895	0.00	0.00	40.15	3.01
3736	4409	8.348507	CAGGAATTCAGTAAATAATTCTGAGGC	58.651	37.037	7.93	0.00	40.41	4.70
3796	4469	7.870445	CACTACTTTAGGGATCTAAATGCTCTC	59.130	40.741	0.00	0.00	42.52	3.20
3831	4504	6.756221	TCCCTCCGTAAAGAAATATAAGAGC	58.244	40.000	0.00	0.00	0.00	4.09
3848	4521	0.684805	ACTTCCTGCTACTCCCTCCG	60.685	60.000	0.00	0.00	0.00	4.63
3888	4561	6.320926	TCATCAACACAGGAACAAAATGAAGA	59.679	34.615	0.00	0.00	0.00	2.87
3889	4562	6.506147	TCATCAACACAGGAACAAAATGAAG	58.494	36.000	0.00	0.00	0.00	3.02
3977	4655	7.760340	GGTAAGTAACACTTTGGATACTCTCAG	59.240	40.741	0.00	0.00	39.51	3.35
4024	4704	4.925646	GTGATCAAATTCCCTTGCAAGTTC	59.074	41.667	24.35	4.27	0.00	3.01
4085	4768	6.073548	GCGAAGGATGAAAACTGGTATCATAG	60.074	42.308	0.00	0.00	34.10	2.23
4092	4775	2.270352	TGCGAAGGATGAAAACTGGT	57.730	45.000	0.00	0.00	0.00	4.00
4132	4815	1.605232	TGCATGCAAATGATCGGCTAG	59.395	47.619	20.30	0.00	0.00	3.42
4142	4825	3.429543	GTCATTTTGTCGTGCATGCAAAT	59.570	39.130	24.58	14.48	33.00	2.32
4370	5063	6.710744	AGTATTTTACCCACAGTTCTGAGTTG	59.289	38.462	6.83	0.00	0.00	3.16
4657	5350	6.892658	ATTTACTGGATTGTAAGTGTGCAA	57.107	33.333	0.00	0.00	34.43	4.08
4866	5560	2.022195	GTGAGGATGCGACTGTACCTA	58.978	52.381	0.00	0.00	0.00	3.08
4884	5578	8.736751	AAAAGGCTAAAAACGTTATACATGTG	57.263	30.769	9.11	0.00	0.00	3.21

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.