Multiple sequence alignment - TraesCS5D01G362100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G362100 chr5D 100.000 2564 0 0 1 2564 440964632 440967195 0.000000e+00 4735.0
1 TraesCS5D01G362100 chr5D 87.066 518 52 13 980 1489 440947874 440948384 2.860000e-159 571.0
2 TraesCS5D01G362100 chr5D 87.425 501 50 10 985 1475 440938505 440939002 4.790000e-157 564.0
3 TraesCS5D01G362100 chr5D 93.085 376 25 1 2121 2495 382093443 382093818 1.340000e-152 549.0
4 TraesCS5D01G362100 chr5D 90.727 399 28 5 2100 2495 446079141 446079533 8.130000e-145 523.0
5 TraesCS5D01G362100 chr5D 85.640 383 43 6 4 382 556862663 556862289 2.390000e-105 392.0
6 TraesCS5D01G362100 chr5D 96.364 55 2 0 2510 2564 446079517 446079571 9.770000e-15 91.6
7 TraesCS5D01G362100 chr5D 96.364 55 2 0 2510 2564 550982962 550983016 9.770000e-15 91.6
8 TraesCS5D01G362100 chr5B 95.068 1257 52 6 541 1795 536508102 536509350 0.000000e+00 1969.0
9 TraesCS5D01G362100 chr5B 87.352 506 48 10 980 1475 536505496 536505995 1.330000e-157 566.0
10 TraesCS5D01G362100 chr5B 82.770 621 59 29 1806 2388 470183413 470182803 6.330000e-141 510.0
11 TraesCS5D01G362100 chr5B 83.002 553 52 23 1931 2470 507688751 507688228 1.800000e-126 462.0
12 TraesCS5D01G362100 chr5B 93.289 298 17 3 1400 1694 536518828 536519125 1.090000e-118 436.0
13 TraesCS5D01G362100 chr5B 83.648 318 45 5 985 1297 536425759 536426074 2.500000e-75 292.0
14 TraesCS5D01G362100 chr5B 85.542 83 6 1 1715 1791 536519541 536519623 5.880000e-12 82.4
15 TraesCS5D01G362100 chr5B 100.000 30 0 0 514 543 78216818 78216847 3.560000e-04 56.5
16 TraesCS5D01G362100 chr5A 92.819 933 54 5 598 1530 557098521 557099440 0.000000e+00 1339.0
17 TraesCS5D01G362100 chr5A 86.653 502 53 8 980 1475 557076763 557077256 6.240000e-151 544.0
18 TraesCS5D01G362100 chr5A 86.706 504 43 10 980 1475 557092709 557093196 2.900000e-149 538.0
19 TraesCS5D01G362100 chr5A 86.667 120 8 3 1621 1740 557099571 557099682 2.680000e-25 126.0
20 TraesCS5D01G362100 chr5A 98.182 55 1 0 2510 2564 7112785 7112839 2.100000e-16 97.1
21 TraesCS5D01G362100 chr3D 91.940 397 29 2 2099 2495 385436713 385436320 1.040000e-153 553.0
22 TraesCS5D01G362100 chr3D 87.831 378 29 10 2121 2495 132929001 132928638 6.560000e-116 427.0
23 TraesCS5D01G362100 chr3D 93.952 248 15 0 1120 1367 66890696 66890943 2.410000e-100 375.0
24 TraesCS5D01G362100 chr3D 96.364 55 2 0 2510 2564 72255535 72255481 9.770000e-15 91.6
25 TraesCS5D01G362100 chr2A 90.955 398 32 3 2100 2495 35577623 35578018 1.350000e-147 532.0
26 TraesCS5D01G362100 chr2A 84.198 424 24 12 1801 2194 35576842 35577252 3.120000e-99 372.0
27 TraesCS5D01G362100 chr3A 91.601 381 26 3 2115 2495 609823381 609823007 2.920000e-144 521.0
28 TraesCS5D01G362100 chr3A 89.203 389 42 0 1020 1408 28396344 28395956 1.070000e-133 486.0
29 TraesCS5D01G362100 chr3A 80.131 609 60 25 1819 2389 609823833 609823248 5.140000e-107 398.0
30 TraesCS5D01G362100 chr3B 91.798 317 26 0 1 317 2342696 2343012 2.340000e-120 442.0
31 TraesCS5D01G362100 chr3B 90.683 322 30 0 4 325 264010861 264010540 1.820000e-116 429.0
32 TraesCS5D01G362100 chr3B 90.214 327 28 4 1 325 708392318 708391994 8.480000e-115 424.0
33 TraesCS5D01G362100 chr3B 86.769 325 28 8 1909 2228 39591683 39591997 5.250000e-92 348.0
34 TraesCS5D01G362100 chr2B 90.769 325 30 0 1 325 543196436 543196112 3.920000e-118 435.0
35 TraesCS5D01G362100 chr2B 90.184 326 29 3 1 325 182254 181931 3.050000e-114 422.0
36 TraesCS5D01G362100 chr2B 89.908 327 33 0 1 327 235579358 235579684 3.050000e-114 422.0
37 TraesCS5D01G362100 chr2B 94.737 38 1 1 517 553 680220836 680220799 9.910000e-05 58.4
38 TraesCS5D01G362100 chr7B 91.167 317 28 0 1 317 632802541 632802225 5.070000e-117 431.0
39 TraesCS5D01G362100 chr7B 86.877 381 34 10 2121 2495 480696935 480696565 1.840000e-111 412.0
40 TraesCS5D01G362100 chr7B 96.364 55 2 0 2510 2564 113517068 113517122 9.770000e-15 91.6
41 TraesCS5D01G362100 chr7B 96.364 55 2 0 2510 2564 480696581 480696527 9.770000e-15 91.6
42 TraesCS5D01G362100 chr6D 90.154 325 30 1 1 325 424671642 424671964 3.050000e-114 422.0
43 TraesCS5D01G362100 chr6D 96.364 55 2 0 2510 2564 308941725 308941779 9.770000e-15 91.6
44 TraesCS5D01G362100 chr6D 94.595 37 0 2 514 549 470750862 470750897 3.560000e-04 56.5
45 TraesCS5D01G362100 chr1D 91.016 256 23 0 1118 1373 10893827 10893572 1.890000e-91 346.0
46 TraesCS5D01G362100 chr1D 100.000 29 0 0 514 542 338068045 338068017 1.000000e-03 54.7
47 TraesCS5D01G362100 chr1D 100.000 29 0 0 514 542 452991933 452991961 1.000000e-03 54.7
48 TraesCS5D01G362100 chr1D 100.000 29 0 0 514 542 475202518 475202546 1.000000e-03 54.7
49 TraesCS5D01G362100 chr2D 90.323 248 21 2 1118 1365 7893282 7893038 3.180000e-84 322.0
50 TraesCS5D01G362100 chr7D 83.245 376 31 13 1806 2152 214117603 214117231 1.480000e-82 316.0
51 TraesCS5D01G362100 chr7D 96.364 55 2 0 2510 2564 263970560 263970614 9.770000e-15 91.6
52 TraesCS5D01G362100 chr7D 96.364 55 2 0 2510 2564 598743504 598743450 9.770000e-15 91.6
53 TraesCS5D01G362100 chr7A 83.824 136 20 2 1324 1458 727833307 727833441 7.450000e-26 128.0
54 TraesCS5D01G362100 chr4A 100.000 31 0 0 515 545 678036190 678036220 9.910000e-05 58.4
55 TraesCS5D01G362100 chr6A 100.000 29 0 0 514 542 37448877 37448905 1.000000e-03 54.7
56 TraesCS5D01G362100 chr6A 96.875 32 1 0 514 545 573849259 573849228 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G362100 chr5D 440964632 440967195 2563 False 4735.0 4735 100.0000 1 2564 1 chr5D.!!$F4 2563
1 TraesCS5D01G362100 chr5D 440947874 440948384 510 False 571.0 571 87.0660 980 1489 1 chr5D.!!$F3 509
2 TraesCS5D01G362100 chr5B 536505496 536509350 3854 False 1267.5 1969 91.2100 541 1795 2 chr5B.!!$F3 1254
3 TraesCS5D01G362100 chr5B 470182803 470183413 610 True 510.0 510 82.7700 1806 2388 1 chr5B.!!$R1 582
4 TraesCS5D01G362100 chr5B 507688228 507688751 523 True 462.0 462 83.0020 1931 2470 1 chr5B.!!$R2 539
5 TraesCS5D01G362100 chr5B 536518828 536519623 795 False 259.2 436 89.4155 1400 1791 2 chr5B.!!$F4 391
6 TraesCS5D01G362100 chr5A 557098521 557099682 1161 False 732.5 1339 89.7430 598 1740 2 chr5A.!!$F4 1142
7 TraesCS5D01G362100 chr2A 35576842 35578018 1176 False 452.0 532 87.5765 1801 2495 2 chr2A.!!$F1 694
8 TraesCS5D01G362100 chr3A 609823007 609823833 826 True 459.5 521 85.8660 1819 2495 2 chr3A.!!$R2 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 368 0.034059 CTAGGATTACAGCCGCCAGG 59.966 60.0 0.0 0.0 41.62 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 4317 0.103572 TAGCCGCTCCCGAAACATAC 59.896 55.0 0.0 0.0 36.29 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.992476 TGGACTACCTCCCAAGCTC 58.008 57.895 0.00 0.00 38.49 4.09
19 20 0.617820 TGGACTACCTCCCAAGCTCC 60.618 60.000 0.00 0.00 38.49 4.70
20 21 1.677637 GGACTACCTCCCAAGCTCCG 61.678 65.000 0.00 0.00 31.83 4.63
21 22 0.971447 GACTACCTCCCAAGCTCCGT 60.971 60.000 0.00 0.00 0.00 4.69
22 23 1.258445 ACTACCTCCCAAGCTCCGTG 61.258 60.000 0.00 0.00 0.00 4.94
24 25 4.785453 CCTCCCAAGCTCCGTGCC 62.785 72.222 0.00 0.00 44.23 5.01
39 40 4.090057 GCCGACGCTGGAGCAAAC 62.090 66.667 0.00 0.00 42.21 2.93
40 41 3.777925 CCGACGCTGGAGCAAACG 61.778 66.667 0.00 1.42 42.21 3.60
41 42 3.036084 CGACGCTGGAGCAAACGT 61.036 61.111 0.00 0.00 42.21 3.99
42 43 2.853914 GACGCTGGAGCAAACGTC 59.146 61.111 0.00 0.00 46.64 4.34
43 44 3.000080 GACGCTGGAGCAAACGTCG 62.000 63.158 0.00 0.00 44.42 5.12
44 45 3.036084 CGCTGGAGCAAACGTCGT 61.036 61.111 0.00 0.00 42.21 4.34
47 48 3.000080 CTGGAGCAAACGTCGTCGC 62.000 63.158 10.83 10.83 41.18 5.19
48 49 3.033764 GGAGCAAACGTCGTCGCA 61.034 61.111 18.56 0.00 41.18 5.10
49 50 2.591311 GGAGCAAACGTCGTCGCAA 61.591 57.895 18.56 0.00 41.18 4.85
50 51 1.436606 GAGCAAACGTCGTCGCAAC 60.437 57.895 18.56 10.33 41.18 4.17
71 72 3.775654 GGAGCCCGAGGACACAGG 61.776 72.222 0.00 0.00 0.00 4.00
72 73 2.997897 GAGCCCGAGGACACAGGT 60.998 66.667 0.00 0.00 0.00 4.00
73 74 2.997897 AGCCCGAGGACACAGGTC 60.998 66.667 0.00 0.00 43.55 3.85
81 82 3.134879 GACACAGGTCCACCACGA 58.865 61.111 0.00 0.00 38.12 4.35
83 84 2.343758 CACAGGTCCACCACGAGG 59.656 66.667 0.00 0.00 38.89 4.63
84 85 2.200370 ACAGGTCCACCACGAGGA 59.800 61.111 5.68 0.00 38.89 3.71
85 86 1.229209 ACAGGTCCACCACGAGGAT 60.229 57.895 5.68 0.00 37.52 3.24
86 87 1.219124 CAGGTCCACCACGAGGATG 59.781 63.158 5.68 0.11 37.52 3.51
87 88 2.125106 GGTCCACCACGAGGATGC 60.125 66.667 5.68 0.00 37.52 3.91
88 89 2.125106 GTCCACCACGAGGATGCC 60.125 66.667 5.68 0.00 37.52 4.40
89 90 3.770040 TCCACCACGAGGATGCCG 61.770 66.667 5.68 0.00 38.69 5.69
90 91 4.082523 CCACCACGAGGATGCCGT 62.083 66.667 5.68 0.00 41.36 5.68
91 92 2.509336 CACCACGAGGATGCCGTC 60.509 66.667 5.68 0.00 38.29 4.79
113 114 2.477880 GGTACGCCACCCTTGATTG 58.522 57.895 0.00 0.00 42.07 2.67
114 115 0.035820 GGTACGCCACCCTTGATTGA 60.036 55.000 0.00 0.00 42.07 2.57
115 116 1.612199 GGTACGCCACCCTTGATTGAA 60.612 52.381 0.00 0.00 42.07 2.69
116 117 1.467342 GTACGCCACCCTTGATTGAAC 59.533 52.381 0.00 0.00 0.00 3.18
118 119 0.523072 CGCCACCCTTGATTGAACAG 59.477 55.000 0.00 0.00 0.00 3.16
119 120 1.881925 CGCCACCCTTGATTGAACAGA 60.882 52.381 0.00 0.00 0.00 3.41
120 121 1.541588 GCCACCCTTGATTGAACAGAC 59.458 52.381 0.00 0.00 0.00 3.51
121 122 2.815589 GCCACCCTTGATTGAACAGACT 60.816 50.000 0.00 0.00 0.00 3.24
122 123 2.816087 CCACCCTTGATTGAACAGACTG 59.184 50.000 0.00 0.00 0.00 3.51
123 124 3.496692 CCACCCTTGATTGAACAGACTGA 60.497 47.826 10.08 0.00 0.00 3.41
124 125 4.330250 CACCCTTGATTGAACAGACTGAT 58.670 43.478 10.08 0.00 0.00 2.90
126 127 5.242393 CACCCTTGATTGAACAGACTGATTT 59.758 40.000 10.08 0.00 0.00 2.17
127 128 5.474876 ACCCTTGATTGAACAGACTGATTTC 59.525 40.000 10.08 4.16 0.00 2.17
128 129 5.105997 CCCTTGATTGAACAGACTGATTTCC 60.106 44.000 10.08 0.00 0.00 3.13
129 130 5.474532 CCTTGATTGAACAGACTGATTTCCA 59.525 40.000 10.08 0.00 0.00 3.53
130 131 6.016024 CCTTGATTGAACAGACTGATTTCCAA 60.016 38.462 10.08 5.94 0.00 3.53
131 132 6.957920 TGATTGAACAGACTGATTTCCAAA 57.042 33.333 10.08 0.00 0.00 3.28
132 133 7.528996 TGATTGAACAGACTGATTTCCAAAT 57.471 32.000 10.08 0.94 0.00 2.32
133 134 7.596494 TGATTGAACAGACTGATTTCCAAATC 58.404 34.615 10.08 9.76 43.91 2.17
135 136 5.384336 TGAACAGACTGATTTCCAAATCCA 58.616 37.500 10.08 0.00 43.19 3.41
136 137 6.012113 TGAACAGACTGATTTCCAAATCCAT 58.988 36.000 10.08 0.00 43.19 3.41
138 139 5.573219 ACAGACTGATTTCCAAATCCATCA 58.427 37.500 10.08 0.00 43.19 3.07
139 140 5.416952 ACAGACTGATTTCCAAATCCATCAC 59.583 40.000 10.08 0.00 43.19 3.06
140 141 4.952335 AGACTGATTTCCAAATCCATCACC 59.048 41.667 9.12 0.00 43.19 4.02
141 142 4.676109 ACTGATTTCCAAATCCATCACCA 58.324 39.130 9.12 0.00 43.19 4.17
142 143 5.085920 ACTGATTTCCAAATCCATCACCAA 58.914 37.500 9.12 0.00 43.19 3.67
143 144 5.047092 ACTGATTTCCAAATCCATCACCAAC 60.047 40.000 9.12 0.00 43.19 3.77
145 146 2.988636 TCCAAATCCATCACCAACCA 57.011 45.000 0.00 0.00 0.00 3.67
146 147 3.471430 TCCAAATCCATCACCAACCAT 57.529 42.857 0.00 0.00 0.00 3.55
147 148 4.599720 TCCAAATCCATCACCAACCATA 57.400 40.909 0.00 0.00 0.00 2.74
148 149 4.535781 TCCAAATCCATCACCAACCATAG 58.464 43.478 0.00 0.00 0.00 2.23
149 150 3.638160 CCAAATCCATCACCAACCATAGG 59.362 47.826 0.00 0.00 0.00 2.57
150 151 4.535781 CAAATCCATCACCAACCATAGGA 58.464 43.478 0.00 0.00 0.00 2.94
152 153 1.843851 TCCATCACCAACCATAGGACC 59.156 52.381 0.00 0.00 0.00 4.46
154 155 1.484653 CATCACCAACCATAGGACCGA 59.515 52.381 0.00 0.00 0.00 4.69
156 157 1.484653 TCACCAACCATAGGACCGATG 59.515 52.381 7.58 7.58 0.00 3.84
158 159 0.535102 CCAACCATAGGACCGATGGC 60.535 60.000 28.23 0.00 46.76 4.40
160 161 0.694444 AACCATAGGACCGATGGCCT 60.694 55.000 28.23 16.00 46.76 5.19
161 162 1.122019 ACCATAGGACCGATGGCCTC 61.122 60.000 28.23 0.00 46.76 4.70
163 164 1.152525 ATAGGACCGATGGCCTCGT 60.153 57.895 18.94 6.61 46.18 4.18
164 165 1.179814 ATAGGACCGATGGCCTCGTC 61.180 60.000 18.94 15.85 46.18 4.20
165 166 2.561467 TAGGACCGATGGCCTCGTCA 62.561 60.000 18.94 0.00 46.18 4.35
169 170 3.147595 CGATGGCCTCGTCAGGGA 61.148 66.667 3.32 0.00 42.56 4.20
170 171 2.721167 CGATGGCCTCGTCAGGGAA 61.721 63.158 3.32 0.00 42.56 3.97
173 174 2.683933 GGCCTCGTCAGGGAAGGA 60.684 66.667 0.00 0.00 40.75 3.36
174 175 2.066999 GGCCTCGTCAGGGAAGGAT 61.067 63.158 0.00 0.00 40.75 3.24
175 176 1.443828 GCCTCGTCAGGGAAGGATC 59.556 63.158 0.00 0.00 40.75 3.36
176 177 2.034048 GCCTCGTCAGGGAAGGATCC 62.034 65.000 2.48 2.48 45.77 3.36
192 193 7.996385 GGAAGGATCCGAAAAATCTTTATTCA 58.004 34.615 5.98 0.00 35.59 2.57
193 194 8.466798 GGAAGGATCCGAAAAATCTTTATTCAA 58.533 33.333 5.98 0.00 35.59 2.69
194 195 9.290483 GAAGGATCCGAAAAATCTTTATTCAAC 57.710 33.333 5.98 0.00 0.00 3.18
195 196 7.472543 AGGATCCGAAAAATCTTTATTCAACG 58.527 34.615 5.98 0.00 0.00 4.10
196 197 6.196538 GGATCCGAAAAATCTTTATTCAACGC 59.803 38.462 0.00 0.00 0.00 4.84
197 198 6.003234 TCCGAAAAATCTTTATTCAACGCA 57.997 33.333 0.00 0.00 0.00 5.24
200 201 6.032460 CCGAAAAATCTTTATTCAACGCAGTC 59.968 38.462 0.00 0.00 45.00 3.51
201 202 6.577055 CGAAAAATCTTTATTCAACGCAGTCA 59.423 34.615 0.00 0.00 45.00 3.41
202 203 7.271223 CGAAAAATCTTTATTCAACGCAGTCAT 59.729 33.333 0.00 0.00 45.00 3.06
203 204 8.452989 AAAAATCTTTATTCAACGCAGTCATC 57.547 30.769 0.00 0.00 45.00 2.92
204 205 4.840401 TCTTTATTCAACGCAGTCATCG 57.160 40.909 0.00 0.00 45.00 3.84
205 206 4.242475 TCTTTATTCAACGCAGTCATCGT 58.758 39.130 0.00 0.00 45.00 3.73
207 208 0.992072 ATTCAACGCAGTCATCGTCG 59.008 50.000 0.00 0.00 45.00 5.12
208 209 1.614227 TTCAACGCAGTCATCGTCGC 61.614 55.000 0.00 0.00 45.00 5.19
209 210 2.088763 CAACGCAGTCATCGTCGCT 61.089 57.895 0.00 0.00 45.00 4.93
210 211 0.796870 CAACGCAGTCATCGTCGCTA 60.797 55.000 0.00 0.00 45.00 4.26
211 212 0.797249 AACGCAGTCATCGTCGCTAC 60.797 55.000 0.00 0.00 45.00 3.58
213 214 1.939785 GCAGTCATCGTCGCTACCG 60.940 63.158 0.00 0.00 0.00 4.02
214 215 1.719709 CAGTCATCGTCGCTACCGA 59.280 57.895 0.00 0.00 42.01 4.69
215 216 0.098200 CAGTCATCGTCGCTACCGAA 59.902 55.000 0.00 0.00 46.34 4.30
216 217 0.377554 AGTCATCGTCGCTACCGAAG 59.622 55.000 0.00 0.00 46.34 3.79
217 218 1.063649 TCATCGTCGCTACCGAAGC 59.936 57.895 0.07 0.07 46.34 3.86
228 229 2.876091 CTACCGAAGCAAAGACGATGA 58.124 47.619 0.00 0.00 0.00 2.92
229 230 2.163818 ACCGAAGCAAAGACGATGAA 57.836 45.000 0.00 0.00 0.00 2.57
231 232 1.798223 CCGAAGCAAAGACGATGAACA 59.202 47.619 0.00 0.00 0.00 3.18
232 233 2.223144 CCGAAGCAAAGACGATGAACAA 59.777 45.455 0.00 0.00 0.00 2.83
233 234 3.218398 CGAAGCAAAGACGATGAACAAC 58.782 45.455 0.00 0.00 0.00 3.32
235 236 2.851195 AGCAAAGACGATGAACAACCT 58.149 42.857 0.00 0.00 0.00 3.50
236 237 4.002906 AGCAAAGACGATGAACAACCTA 57.997 40.909 0.00 0.00 0.00 3.08
239 240 5.298276 AGCAAAGACGATGAACAACCTAAAA 59.702 36.000 0.00 0.00 0.00 1.52
240 241 5.974751 GCAAAGACGATGAACAACCTAAAAA 59.025 36.000 0.00 0.00 0.00 1.94
241 242 6.075046 GCAAAGACGATGAACAACCTAAAAAC 60.075 38.462 0.00 0.00 0.00 2.43
243 244 5.374071 AGACGATGAACAACCTAAAAACCT 58.626 37.500 0.00 0.00 0.00 3.50
245 246 6.649557 AGACGATGAACAACCTAAAAACCTAG 59.350 38.462 0.00 0.00 0.00 3.02
246 247 6.527423 ACGATGAACAACCTAAAAACCTAGA 58.473 36.000 0.00 0.00 0.00 2.43
247 248 6.426025 ACGATGAACAACCTAAAAACCTAGAC 59.574 38.462 0.00 0.00 0.00 2.59
248 249 6.649557 CGATGAACAACCTAAAAACCTAGACT 59.350 38.462 0.00 0.00 0.00 3.24
249 250 7.816031 CGATGAACAACCTAAAAACCTAGACTA 59.184 37.037 0.00 0.00 0.00 2.59
251 252 7.794041 TGAACAACCTAAAAACCTAGACTACA 58.206 34.615 0.00 0.00 0.00 2.74
252 253 8.266473 TGAACAACCTAAAAACCTAGACTACAA 58.734 33.333 0.00 0.00 0.00 2.41
253 254 8.672823 AACAACCTAAAAACCTAGACTACAAG 57.327 34.615 0.00 0.00 0.00 3.16
255 256 6.370186 ACCTAAAAACCTAGACTACAAGGG 57.630 41.667 0.00 0.00 37.18 3.95
257 258 4.652679 AAAAACCTAGACTACAAGGGGG 57.347 45.455 0.00 0.00 37.18 5.40
258 259 3.286871 AAACCTAGACTACAAGGGGGT 57.713 47.619 0.00 0.00 37.18 4.95
259 260 4.424761 AAACCTAGACTACAAGGGGGTA 57.575 45.455 0.00 0.00 37.18 3.69
260 261 4.424761 AACCTAGACTACAAGGGGGTAA 57.575 45.455 0.00 0.00 37.18 2.85
261 262 4.424761 ACCTAGACTACAAGGGGGTAAA 57.575 45.455 0.00 0.00 37.18 2.01
263 264 5.164897 ACCTAGACTACAAGGGGGTAAAAA 58.835 41.667 0.00 0.00 37.18 1.94
264 265 5.013495 ACCTAGACTACAAGGGGGTAAAAAC 59.987 44.000 0.00 0.00 37.18 2.43
267 268 4.287845 AGACTACAAGGGGGTAAAAACGAT 59.712 41.667 0.00 0.00 0.00 3.73
268 269 4.582869 ACTACAAGGGGGTAAAAACGATC 58.417 43.478 0.00 0.00 0.00 3.69
269 270 2.799017 ACAAGGGGGTAAAAACGATCC 58.201 47.619 0.00 0.00 0.00 3.36
271 272 2.490509 CAAGGGGGTAAAAACGATCCAC 59.509 50.000 0.00 0.00 0.00 4.02
273 274 1.814394 GGGGGTAAAAACGATCCACAC 59.186 52.381 0.00 0.00 0.00 3.82
274 275 2.506444 GGGGTAAAAACGATCCACACA 58.494 47.619 0.00 0.00 0.00 3.72
277 278 2.545106 GGTAAAAACGATCCACACACGT 59.455 45.455 0.00 0.00 41.97 4.49
278 279 2.748461 AAAAACGATCCACACACGTG 57.252 45.000 15.48 15.48 43.21 4.49
287 288 2.653742 CACACACGTGGATCTAGCG 58.346 57.895 21.57 0.07 39.64 4.26
288 289 0.170339 CACACACGTGGATCTAGCGA 59.830 55.000 21.57 0.00 39.64 4.93
291 292 1.065928 CACGTGGATCTAGCGACCC 59.934 63.158 7.95 0.00 0.00 4.46
292 293 2.125961 ACGTGGATCTAGCGACCCC 61.126 63.158 10.09 0.00 0.00 4.95
310 311 4.308458 CCTCGCCACCGACAACCA 62.308 66.667 0.00 0.00 38.82 3.67
313 314 4.025401 CGCCACCGACAACCAAGC 62.025 66.667 0.00 0.00 36.29 4.01
314 315 2.594592 GCCACCGACAACCAAGCT 60.595 61.111 0.00 0.00 0.00 3.74
315 316 2.617274 GCCACCGACAACCAAGCTC 61.617 63.158 0.00 0.00 0.00 4.09
316 317 2.317609 CCACCGACAACCAAGCTCG 61.318 63.158 0.00 0.00 0.00 5.03
317 318 1.300620 CACCGACAACCAAGCTCGA 60.301 57.895 0.00 0.00 0.00 4.04
319 320 2.372690 CCGACAACCAAGCTCGACG 61.373 63.158 0.00 0.00 0.00 5.12
320 321 2.853914 GACAACCAAGCTCGACGC 59.146 61.111 0.00 0.00 39.57 5.19
321 322 2.665185 ACAACCAAGCTCGACGCC 60.665 61.111 0.00 0.00 40.39 5.68
325 326 4.735132 CCAAGCTCGACGCCGGAA 62.735 66.667 5.05 0.00 40.39 4.30
326 327 3.181967 CAAGCTCGACGCCGGAAG 61.182 66.667 5.05 0.00 40.39 3.46
327 328 3.371063 AAGCTCGACGCCGGAAGA 61.371 61.111 5.05 0.00 40.39 2.87
328 329 2.711922 AAGCTCGACGCCGGAAGAT 61.712 57.895 5.05 0.00 40.39 2.40
329 330 2.615262 AAGCTCGACGCCGGAAGATC 62.615 60.000 5.05 0.00 40.39 2.75
330 331 2.352457 CTCGACGCCGGAAGATCG 60.352 66.667 5.05 8.29 36.24 3.69
337 338 2.107141 CCGGAAGATCGGCCACTC 59.893 66.667 2.24 0.00 43.71 3.51
338 339 2.107141 CGGAAGATCGGCCACTCC 59.893 66.667 2.24 0.00 0.00 3.85
339 340 2.427245 CGGAAGATCGGCCACTCCT 61.427 63.158 2.24 0.00 0.00 3.69
340 341 1.144936 GGAAGATCGGCCACTCCTG 59.855 63.158 2.24 0.00 0.00 3.86
341 342 1.144936 GAAGATCGGCCACTCCTGG 59.855 63.158 2.24 0.00 41.13 4.45
356 357 2.840572 TGGCGGCGGCTAGGATTA 60.841 61.111 33.21 9.31 39.81 1.75
358 359 2.420043 GCGGCGGCTAGGATTACA 59.580 61.111 9.78 0.00 35.83 2.41
359 360 1.664965 GCGGCGGCTAGGATTACAG 60.665 63.158 9.78 0.00 35.83 2.74
364 365 4.363034 GCTAGGATTACAGCCGCC 57.637 61.111 0.00 0.00 0.00 6.13
365 366 1.445942 GCTAGGATTACAGCCGCCA 59.554 57.895 0.00 0.00 0.00 5.69
366 367 0.601311 GCTAGGATTACAGCCGCCAG 60.601 60.000 0.00 0.00 0.00 4.85
367 368 0.034059 CTAGGATTACAGCCGCCAGG 59.966 60.000 0.00 0.00 41.62 4.45
368 369 1.407656 TAGGATTACAGCCGCCAGGG 61.408 60.000 0.00 0.00 38.20 4.45
379 380 3.062466 GCCAGGGGCGAGGAAAAC 61.062 66.667 0.00 0.00 39.62 2.43
380 381 2.434331 CCAGGGGCGAGGAAAACA 59.566 61.111 0.00 0.00 0.00 2.83
381 382 1.675641 CCAGGGGCGAGGAAAACAG 60.676 63.158 0.00 0.00 0.00 3.16
383 384 2.282180 GGGGCGAGGAAAACAGCA 60.282 61.111 0.00 0.00 0.00 4.41
386 387 2.127232 GCGAGGAAAACAGCACGC 60.127 61.111 0.00 0.00 39.33 5.34
387 388 2.170985 CGAGGAAAACAGCACGCG 59.829 61.111 3.53 3.53 0.00 6.01
388 389 2.127232 GAGGAAAACAGCACGCGC 60.127 61.111 5.73 0.00 38.99 6.86
407 408 2.490217 CGATCGGTCGGCTCACTT 59.510 61.111 11.03 0.00 44.00 3.16
409 410 1.511305 GATCGGTCGGCTCACTTGA 59.489 57.895 0.00 0.00 0.00 3.02
411 412 0.965866 ATCGGTCGGCTCACTTGAGA 60.966 55.000 10.54 0.00 44.74 3.27
413 414 0.738975 CGGTCGGCTCACTTGAGATA 59.261 55.000 10.54 0.00 44.74 1.98
414 415 1.268794 CGGTCGGCTCACTTGAGATAG 60.269 57.143 10.54 0.74 44.74 2.08
415 416 1.537135 GGTCGGCTCACTTGAGATAGC 60.537 57.143 10.54 0.00 44.74 2.97
419 420 2.977772 GCTCACTTGAGATAGCCTGT 57.022 50.000 10.54 0.00 44.74 4.00
420 421 3.258971 GCTCACTTGAGATAGCCTGTT 57.741 47.619 10.54 0.00 44.74 3.16
421 422 3.194062 GCTCACTTGAGATAGCCTGTTC 58.806 50.000 10.54 0.00 44.74 3.18
422 423 3.368843 GCTCACTTGAGATAGCCTGTTCA 60.369 47.826 10.54 0.00 44.74 3.18
423 424 4.682859 GCTCACTTGAGATAGCCTGTTCAT 60.683 45.833 10.54 0.00 44.74 2.57
425 426 5.423015 TCACTTGAGATAGCCTGTTCATTC 58.577 41.667 0.00 0.00 0.00 2.67
426 427 5.188555 TCACTTGAGATAGCCTGTTCATTCT 59.811 40.000 0.00 0.00 0.00 2.40
427 428 5.293814 CACTTGAGATAGCCTGTTCATTCTG 59.706 44.000 0.00 0.00 0.00 3.02
429 430 5.883685 TGAGATAGCCTGTTCATTCTGAT 57.116 39.130 0.00 0.00 0.00 2.90
430 431 6.983906 TGAGATAGCCTGTTCATTCTGATA 57.016 37.500 0.00 0.00 0.00 2.15
432 433 5.777802 AGATAGCCTGTTCATTCTGATACG 58.222 41.667 0.00 0.00 0.00 3.06
433 434 3.895232 AGCCTGTTCATTCTGATACGT 57.105 42.857 0.00 0.00 0.00 3.57
434 435 6.490381 AGATAGCCTGTTCATTCTGATACGTA 59.510 38.462 0.00 0.00 0.00 3.57
436 437 3.486108 GCCTGTTCATTCTGATACGTACG 59.514 47.826 15.01 15.01 0.00 3.67
437 438 4.669318 CCTGTTCATTCTGATACGTACGT 58.331 43.478 25.98 25.98 0.00 3.57
438 439 5.731406 GCCTGTTCATTCTGATACGTACGTA 60.731 44.000 28.62 28.62 34.87 3.57
439 440 5.680229 CCTGTTCATTCTGATACGTACGTAC 59.320 44.000 28.99 21.48 33.01 3.67
452 453 3.404564 CGTACGTACGTACTTGTACACC 58.595 50.000 40.05 21.37 46.22 4.16
453 454 3.120820 CGTACGTACGTACTTGTACACCA 60.121 47.826 40.05 14.58 46.22 4.17
455 456 2.878406 ACGTACGTACTTGTACACCACT 59.122 45.455 21.41 0.00 43.89 4.00
456 457 3.315191 ACGTACGTACTTGTACACCACTT 59.685 43.478 21.41 0.00 43.89 3.16
458 459 4.146961 CGTACGTACTTGTACACCACTTTG 59.853 45.833 22.55 0.00 43.89 2.77
459 460 4.389890 ACGTACTTGTACACCACTTTGA 57.610 40.909 10.91 0.00 0.00 2.69
460 461 4.114794 ACGTACTTGTACACCACTTTGAC 58.885 43.478 10.91 0.00 0.00 3.18
461 462 3.492011 CGTACTTGTACACCACTTTGACC 59.508 47.826 10.91 0.00 0.00 4.02
464 465 2.631160 TGTACACCACTTTGACCCTG 57.369 50.000 0.00 0.00 0.00 4.45
465 466 2.120312 TGTACACCACTTTGACCCTGA 58.880 47.619 0.00 0.00 0.00 3.86
466 467 2.158871 TGTACACCACTTTGACCCTGAC 60.159 50.000 0.00 0.00 0.00 3.51
468 469 0.182537 CACCACTTTGACCCTGACCA 59.817 55.000 0.00 0.00 0.00 4.02
469 470 0.923358 ACCACTTTGACCCTGACCAA 59.077 50.000 0.00 0.00 0.00 3.67
472 473 0.550914 ACTTTGACCCTGACCAAGCA 59.449 50.000 0.00 0.00 0.00 3.91
474 475 0.550914 TTTGACCCTGACCAAGCACT 59.449 50.000 0.00 0.00 0.00 4.40
475 476 1.429930 TTGACCCTGACCAAGCACTA 58.570 50.000 0.00 0.00 0.00 2.74
476 477 0.976641 TGACCCTGACCAAGCACTAG 59.023 55.000 0.00 0.00 0.00 2.57
478 479 1.127567 ACCCTGACCAAGCACTAGCA 61.128 55.000 0.00 0.00 45.49 3.49
479 480 0.036732 CCCTGACCAAGCACTAGCAA 59.963 55.000 0.00 0.00 45.49 3.91
480 481 1.545428 CCCTGACCAAGCACTAGCAAA 60.545 52.381 0.00 0.00 45.49 3.68
481 482 1.808945 CCTGACCAAGCACTAGCAAAG 59.191 52.381 0.00 0.00 45.49 2.77
482 483 2.498167 CTGACCAAGCACTAGCAAAGT 58.502 47.619 0.00 0.00 45.49 2.66
483 484 2.880890 CTGACCAAGCACTAGCAAAGTT 59.119 45.455 0.00 0.00 45.49 2.66
484 485 2.618241 TGACCAAGCACTAGCAAAGTTG 59.382 45.455 0.00 0.00 45.49 3.16
485 486 2.618709 GACCAAGCACTAGCAAAGTTGT 59.381 45.455 0.00 0.00 45.49 3.32
487 488 2.030805 CCAAGCACTAGCAAAGTTGTCC 60.031 50.000 0.00 0.00 45.49 4.02
489 490 1.142870 AGCACTAGCAAAGTTGTCCCA 59.857 47.619 0.00 0.00 45.49 4.37
494 495 0.468226 AGCAAAGTTGTCCCACTCGA 59.532 50.000 0.00 0.00 0.00 4.04
495 496 0.868406 GCAAAGTTGTCCCACTCGAG 59.132 55.000 11.84 11.84 0.00 4.04
496 497 1.810412 GCAAAGTTGTCCCACTCGAGT 60.810 52.381 13.58 13.58 0.00 4.18
497 498 2.547218 GCAAAGTTGTCCCACTCGAGTA 60.547 50.000 19.57 0.00 0.00 2.59
499 500 1.991121 AGTTGTCCCACTCGAGTACA 58.009 50.000 19.57 16.48 0.00 2.90
500 501 2.313317 AGTTGTCCCACTCGAGTACAA 58.687 47.619 22.43 22.43 0.00 2.41
501 502 2.897969 AGTTGTCCCACTCGAGTACAAT 59.102 45.455 26.65 16.67 33.10 2.71
502 503 3.323979 AGTTGTCCCACTCGAGTACAATT 59.676 43.478 26.65 21.96 33.10 2.32
504 505 3.162666 TGTCCCACTCGAGTACAATTCT 58.837 45.455 19.57 0.00 0.00 2.40
505 506 3.192844 TGTCCCACTCGAGTACAATTCTC 59.807 47.826 19.57 4.55 0.00 2.87
506 507 3.444388 GTCCCACTCGAGTACAATTCTCT 59.556 47.826 19.57 0.00 0.00 3.10
507 508 4.639310 GTCCCACTCGAGTACAATTCTCTA 59.361 45.833 19.57 0.00 0.00 2.43
508 509 4.882427 TCCCACTCGAGTACAATTCTCTAG 59.118 45.833 19.57 0.66 33.08 2.43
509 510 4.036971 CCCACTCGAGTACAATTCTCTAGG 59.963 50.000 19.57 10.32 31.74 3.02
510 511 4.641094 CCACTCGAGTACAATTCTCTAGGT 59.359 45.833 19.57 0.00 31.74 3.08
512 513 6.350277 CCACTCGAGTACAATTCTCTAGGTTT 60.350 42.308 19.57 0.00 31.74 3.27
513 514 6.748198 CACTCGAGTACAATTCTCTAGGTTTC 59.252 42.308 19.57 0.00 31.74 2.78
514 515 5.877031 TCGAGTACAATTCTCTAGGTTTCG 58.123 41.667 0.00 0.00 0.00 3.46
516 517 5.652518 GAGTACAATTCTCTAGGTTTCGCT 58.347 41.667 0.00 0.00 0.00 4.93
517 518 5.652518 AGTACAATTCTCTAGGTTTCGCTC 58.347 41.667 0.00 0.00 0.00 5.03
518 519 4.810191 ACAATTCTCTAGGTTTCGCTCT 57.190 40.909 0.00 0.00 0.00 4.09
519 520 5.153950 ACAATTCTCTAGGTTTCGCTCTT 57.846 39.130 0.00 0.00 0.00 2.85
520 521 6.282199 ACAATTCTCTAGGTTTCGCTCTTA 57.718 37.500 0.00 0.00 0.00 2.10
521 522 6.879400 ACAATTCTCTAGGTTTCGCTCTTAT 58.121 36.000 0.00 0.00 0.00 1.73
522 523 8.008513 ACAATTCTCTAGGTTTCGCTCTTATA 57.991 34.615 0.00 0.00 0.00 0.98
523 524 8.643324 ACAATTCTCTAGGTTTCGCTCTTATAT 58.357 33.333 0.00 0.00 0.00 0.86
524 525 9.482627 CAATTCTCTAGGTTTCGCTCTTATATT 57.517 33.333 0.00 0.00 0.00 1.28
528 529 9.516546 TCTCTAGGTTTCGCTCTTATATTATGA 57.483 33.333 0.00 0.00 0.00 2.15
529 530 9.781834 CTCTAGGTTTCGCTCTTATATTATGAG 57.218 37.037 0.00 0.00 34.20 2.90
530 531 9.516546 TCTAGGTTTCGCTCTTATATTATGAGA 57.483 33.333 0.00 0.00 33.20 3.27
531 532 9.562583 CTAGGTTTCGCTCTTATATTATGAGAC 57.437 37.037 0.00 0.00 33.20 3.36
532 533 7.085116 AGGTTTCGCTCTTATATTATGAGACG 58.915 38.462 10.99 10.99 33.20 4.18
533 534 6.308282 GGTTTCGCTCTTATATTATGAGACGG 59.692 42.308 14.36 4.10 34.10 4.79
534 535 6.812879 TTCGCTCTTATATTATGAGACGGA 57.187 37.500 14.36 8.03 34.10 4.69
535 536 6.424176 TCGCTCTTATATTATGAGACGGAG 57.576 41.667 14.36 0.00 34.10 4.63
536 537 5.354513 TCGCTCTTATATTATGAGACGGAGG 59.645 44.000 14.36 1.57 34.10 4.30
537 538 5.354513 CGCTCTTATATTATGAGACGGAGGA 59.645 44.000 0.00 0.00 33.20 3.71
538 539 6.127980 CGCTCTTATATTATGAGACGGAGGAA 60.128 42.308 0.00 0.00 33.20 3.36
539 540 7.254852 GCTCTTATATTATGAGACGGAGGAAG 58.745 42.308 0.00 0.00 33.20 3.46
541 542 9.451002 CTCTTATATTATGAGACGGAGGAAGTA 57.549 37.037 0.00 0.00 33.20 2.24
542 543 9.976776 TCTTATATTATGAGACGGAGGAAGTAT 57.023 33.333 0.00 0.00 0.00 2.12
547 548 8.887264 ATTATGAGACGGAGGAAGTATATCTT 57.113 34.615 0.00 0.00 39.32 2.40
548 549 9.976776 ATTATGAGACGGAGGAAGTATATCTTA 57.023 33.333 0.00 0.00 36.40 2.10
551 552 7.058525 TGAGACGGAGGAAGTATATCTTACAA 58.941 38.462 0.00 0.00 39.36 2.41
552 553 7.558807 TGAGACGGAGGAAGTATATCTTACAAA 59.441 37.037 0.00 0.00 39.36 2.83
570 2638 4.773013 ACAAACAAGAAGACGGGAAGTAA 58.227 39.130 0.00 0.00 0.00 2.24
571 2639 4.814771 ACAAACAAGAAGACGGGAAGTAAG 59.185 41.667 0.00 0.00 0.00 2.34
614 2682 0.527817 CCAGATCGGTCGCACCTAAC 60.528 60.000 0.00 0.00 35.66 2.34
641 2709 2.076863 GAGTGACATGTACCCAGTTGC 58.923 52.381 0.00 0.00 0.00 4.17
646 2714 1.628340 ACATGTACCCAGTTGCAGCTA 59.372 47.619 1.52 0.00 0.00 3.32
688 2756 3.521126 AGGGAGTGTAGCAATGAAGACAT 59.479 43.478 0.00 0.00 38.50 3.06
689 2757 4.018960 AGGGAGTGTAGCAATGAAGACATT 60.019 41.667 0.00 0.00 46.10 2.71
690 2758 4.702131 GGGAGTGTAGCAATGAAGACATTT 59.298 41.667 0.00 0.00 43.17 2.32
700 2768 5.687285 GCAATGAAGACATTTTTCAACGAGT 59.313 36.000 0.00 0.00 43.17 4.18
742 2810 4.201930 CGAGAGTGACACTCCCACTTATAC 60.202 50.000 28.08 3.96 46.18 1.47
784 2852 4.531357 TCCCTACTACCTAAGCTTAGCA 57.469 45.455 25.38 14.98 0.00 3.49
793 2861 3.181433 ACCTAAGCTTAGCAACCCACTTT 60.181 43.478 25.38 0.00 0.00 2.66
794 2862 3.440522 CCTAAGCTTAGCAACCCACTTTC 59.559 47.826 25.38 0.00 0.00 2.62
795 2863 2.959465 AGCTTAGCAACCCACTTTCT 57.041 45.000 7.07 0.00 0.00 2.52
796 2864 4.367039 AAGCTTAGCAACCCACTTTCTA 57.633 40.909 7.07 0.00 0.00 2.10
797 2865 3.676093 AGCTTAGCAACCCACTTTCTAC 58.324 45.455 7.07 0.00 0.00 2.59
801 2869 3.697619 AGCAACCCACTTTCTACTACC 57.302 47.619 0.00 0.00 0.00 3.18
878 2946 0.737715 CTTCCCTCCTTCGCAACTCG 60.738 60.000 0.00 0.00 40.15 4.18
880 2948 2.048222 CCTCCTTCGCAACTCGCA 60.048 61.111 0.00 0.00 42.60 5.10
1718 4232 2.412870 TGTGTCATGTCATCCGAACAC 58.587 47.619 0.00 0.00 0.00 3.32
1760 4275 2.851104 GCGTACGTGCAACTGGAC 59.149 61.111 17.90 0.00 34.15 4.02
1772 4293 3.434319 CTGGACGGTGTGCATGCC 61.434 66.667 16.68 7.25 32.66 4.40
1791 4312 1.227645 ATGGGTCGATGATGCACCG 60.228 57.895 0.00 0.00 0.00 4.94
1795 4316 1.349627 GTCGATGATGCACCGCTTG 59.650 57.895 0.00 0.00 0.00 4.01
1796 4317 1.815003 TCGATGATGCACCGCTTGG 60.815 57.895 0.00 0.00 39.35 3.61
1817 4338 2.884207 GTTTCGGGAGCGGCTACG 60.884 66.667 17.32 17.32 44.63 3.51
1845 4366 5.016831 AGTTGACTGACTTCTTTTTGGGTT 58.983 37.500 0.00 0.00 0.00 4.11
1904 4440 1.068333 CGTGTTTGCTGAATCCCAAGG 60.068 52.381 0.00 0.00 0.00 3.61
1905 4441 1.963515 GTGTTTGCTGAATCCCAAGGT 59.036 47.619 0.00 0.00 0.00 3.50
1949 4500 5.350640 CCGTGTATTACCCTTGAAGAAGAAC 59.649 44.000 0.00 0.00 0.00 3.01
2021 4576 7.699391 GCGATAAAAACCAGGTAAGGTAAAATC 59.301 37.037 0.00 0.00 42.25 2.17
2168 5190 7.297936 GGGAAGAATGAAACCCTTTAAGAAA 57.702 36.000 0.00 0.00 39.28 2.52
2250 5272 6.597262 AACCCTTTAAGAAAACAAAATGCG 57.403 33.333 0.00 0.00 0.00 4.73
2251 5273 5.908341 ACCCTTTAAGAAAACAAAATGCGA 58.092 33.333 0.00 0.00 0.00 5.10
2434 5457 2.433604 TGCCCTGAAATTGCACTTTTCA 59.566 40.909 18.22 18.22 39.96 2.69
2541 5565 3.561310 CACACATGGTGTATCATACCTGC 59.439 47.826 1.15 0.00 45.65 4.85
2542 5566 2.802247 CACATGGTGTATCATACCTGCG 59.198 50.000 0.00 0.00 39.01 5.18
2543 5567 2.434336 ACATGGTGTATCATACCTGCGT 59.566 45.455 0.00 0.00 39.01 5.24
2544 5568 2.595124 TGGTGTATCATACCTGCGTG 57.405 50.000 0.00 0.00 39.01 5.34
2545 5569 1.828595 TGGTGTATCATACCTGCGTGT 59.171 47.619 0.00 0.00 39.01 4.49
2546 5570 3.025262 TGGTGTATCATACCTGCGTGTA 58.975 45.455 0.00 0.00 39.01 2.90
2547 5571 3.639561 TGGTGTATCATACCTGCGTGTAT 59.360 43.478 0.00 0.00 39.01 2.29
2548 5572 4.828387 TGGTGTATCATACCTGCGTGTATA 59.172 41.667 0.00 0.00 39.01 1.47
2549 5573 5.048294 TGGTGTATCATACCTGCGTGTATAG 60.048 44.000 0.00 0.00 39.01 1.31
2550 5574 5.048224 GGTGTATCATACCTGCGTGTATAGT 60.048 44.000 0.00 0.00 35.30 2.12
2551 5575 6.444633 GTGTATCATACCTGCGTGTATAGTT 58.555 40.000 0.00 0.00 30.38 2.24
2552 5576 7.308770 GGTGTATCATACCTGCGTGTATAGTTA 60.309 40.741 0.00 0.00 35.30 2.24
2553 5577 7.536622 GTGTATCATACCTGCGTGTATAGTTAC 59.463 40.741 0.00 2.84 30.38 2.50
2554 5578 6.896021 ATCATACCTGCGTGTATAGTTACT 57.104 37.500 0.00 0.00 30.38 2.24
2555 5579 6.704289 TCATACCTGCGTGTATAGTTACTT 57.296 37.500 0.00 0.00 30.38 2.24
2556 5580 7.806409 TCATACCTGCGTGTATAGTTACTTA 57.194 36.000 0.00 0.00 30.38 2.24
2557 5581 7.642669 TCATACCTGCGTGTATAGTTACTTAC 58.357 38.462 0.00 0.00 30.38 2.34
2558 5582 5.902613 ACCTGCGTGTATAGTTACTTACA 57.097 39.130 0.00 0.00 0.00 2.41
2559 5583 6.271488 ACCTGCGTGTATAGTTACTTACAA 57.729 37.500 8.26 0.00 30.59 2.41
2560 5584 6.690530 ACCTGCGTGTATAGTTACTTACAAA 58.309 36.000 8.26 0.76 30.59 2.83
2561 5585 6.587608 ACCTGCGTGTATAGTTACTTACAAAC 59.412 38.462 8.26 5.68 30.59 2.93
2562 5586 6.587226 CCTGCGTGTATAGTTACTTACAAACA 59.413 38.462 8.26 8.56 30.59 2.83
2563 5587 7.337150 TGCGTGTATAGTTACTTACAAACAC 57.663 36.000 8.26 6.97 34.87 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.677637 CGGAGCTTGGGAGGTAGTCC 61.678 65.000 0.00 0.00 46.10 3.85
2 3 0.971447 ACGGAGCTTGGGAGGTAGTC 60.971 60.000 0.00 0.00 32.79 2.59
3 4 1.078710 ACGGAGCTTGGGAGGTAGT 59.921 57.895 0.00 0.00 32.79 2.73
5 6 2.656069 GCACGGAGCTTGGGAGGTA 61.656 63.158 0.00 0.00 41.15 3.08
7 8 4.785453 GGCACGGAGCTTGGGAGG 62.785 72.222 2.14 0.00 44.79 4.30
21 22 4.617520 TTTGCTCCAGCGTCGGCA 62.618 61.111 0.00 0.00 45.83 5.69
22 23 4.090057 GTTTGCTCCAGCGTCGGC 62.090 66.667 0.00 0.00 45.83 5.54
24 25 3.000080 GACGTTTGCTCCAGCGTCG 62.000 63.158 0.00 7.82 45.83 5.12
25 26 2.853914 GACGTTTGCTCCAGCGTC 59.146 61.111 0.00 0.00 45.83 5.19
26 27 3.036084 CGACGTTTGCTCCAGCGT 61.036 61.111 0.00 0.00 45.83 5.07
28 29 2.853914 GACGACGTTTGCTCCAGC 59.146 61.111 0.13 0.00 42.50 4.85
29 30 3.000080 GCGACGACGTTTGCTCCAG 62.000 63.158 16.11 0.00 41.98 3.86
30 31 3.033764 GCGACGACGTTTGCTCCA 61.034 61.111 16.11 0.00 41.98 3.86
31 32 2.591311 TTGCGACGACGTTTGCTCC 61.591 57.895 21.56 0.63 41.98 4.70
32 33 1.436606 GTTGCGACGACGTTTGCTC 60.437 57.895 21.56 13.49 41.98 4.26
33 34 2.624264 GTTGCGACGACGTTTGCT 59.376 55.556 21.56 0.00 41.98 3.91
54 55 3.775654 CCTGTGTCCTCGGGCTCC 61.776 72.222 0.00 0.00 0.00 4.70
55 56 2.997897 ACCTGTGTCCTCGGGCTC 60.998 66.667 0.00 0.00 37.37 4.70
56 57 2.997897 GACCTGTGTCCTCGGGCT 60.998 66.667 0.00 0.00 37.37 5.19
64 65 1.006102 CTCGTGGTGGACCTGTGTC 60.006 63.158 0.00 0.00 40.98 3.67
65 66 2.507854 CCTCGTGGTGGACCTGTGT 61.508 63.158 0.00 0.00 36.82 3.72
66 67 1.544825 ATCCTCGTGGTGGACCTGTG 61.545 60.000 2.99 0.00 36.30 3.66
67 68 1.229209 ATCCTCGTGGTGGACCTGT 60.229 57.895 2.99 0.00 36.30 4.00
69 70 2.660064 GCATCCTCGTGGTGGACCT 61.660 63.158 2.99 0.00 36.30 3.85
71 72 2.125106 GGCATCCTCGTGGTGGAC 60.125 66.667 2.99 0.00 36.30 4.02
72 73 3.770040 CGGCATCCTCGTGGTGGA 61.770 66.667 2.99 0.00 38.06 4.02
73 74 4.082523 ACGGCATCCTCGTGGTGG 62.083 66.667 2.99 0.00 39.55 4.61
75 76 4.129737 CGACGGCATCCTCGTGGT 62.130 66.667 2.99 0.00 41.22 4.16
96 97 1.467342 GTTCAATCAAGGGTGGCGTAC 59.533 52.381 0.00 0.00 0.00 3.67
97 98 1.072489 TGTTCAATCAAGGGTGGCGTA 59.928 47.619 0.00 0.00 0.00 4.42
98 99 0.179004 TGTTCAATCAAGGGTGGCGT 60.179 50.000 0.00 0.00 0.00 5.68
99 100 0.523072 CTGTTCAATCAAGGGTGGCG 59.477 55.000 0.00 0.00 0.00 5.69
100 101 1.541588 GTCTGTTCAATCAAGGGTGGC 59.458 52.381 0.00 0.00 0.00 5.01
102 103 3.743521 TCAGTCTGTTCAATCAAGGGTG 58.256 45.455 0.00 0.00 0.00 4.61
104 105 5.105997 GGAAATCAGTCTGTTCAATCAAGGG 60.106 44.000 0.00 0.00 0.00 3.95
108 109 6.957920 TTTGGAAATCAGTCTGTTCAATCA 57.042 33.333 0.00 0.00 0.00 2.57
109 110 7.031975 GGATTTGGAAATCAGTCTGTTCAATC 58.968 38.462 12.90 4.36 45.10 2.67
110 111 6.494491 TGGATTTGGAAATCAGTCTGTTCAAT 59.506 34.615 12.90 0.00 45.10 2.57
111 112 5.832595 TGGATTTGGAAATCAGTCTGTTCAA 59.167 36.000 12.90 0.00 45.10 2.69
112 113 5.384336 TGGATTTGGAAATCAGTCTGTTCA 58.616 37.500 12.90 0.00 45.10 3.18
113 114 5.964958 TGGATTTGGAAATCAGTCTGTTC 57.035 39.130 12.90 0.00 45.10 3.18
114 115 6.012113 TGATGGATTTGGAAATCAGTCTGTT 58.988 36.000 12.90 0.00 45.10 3.16
115 116 5.416952 GTGATGGATTTGGAAATCAGTCTGT 59.583 40.000 12.90 0.00 45.10 3.41
116 117 5.163581 GGTGATGGATTTGGAAATCAGTCTG 60.164 44.000 12.90 0.00 45.10 3.51
118 119 4.706476 TGGTGATGGATTTGGAAATCAGTC 59.294 41.667 12.90 10.23 45.10 3.51
119 120 4.676109 TGGTGATGGATTTGGAAATCAGT 58.324 39.130 12.90 2.33 45.10 3.41
120 121 5.413499 GTTGGTGATGGATTTGGAAATCAG 58.587 41.667 12.90 0.00 45.10 2.90
121 122 4.222588 GGTTGGTGATGGATTTGGAAATCA 59.777 41.667 12.90 1.91 45.10 2.57
122 123 4.222588 TGGTTGGTGATGGATTTGGAAATC 59.777 41.667 3.85 3.85 43.12 2.17
123 124 4.166539 TGGTTGGTGATGGATTTGGAAAT 58.833 39.130 0.00 0.00 0.00 2.17
124 125 3.581101 TGGTTGGTGATGGATTTGGAAA 58.419 40.909 0.00 0.00 0.00 3.13
126 127 2.988636 TGGTTGGTGATGGATTTGGA 57.011 45.000 0.00 0.00 0.00 3.53
127 128 3.638160 CCTATGGTTGGTGATGGATTTGG 59.362 47.826 0.00 0.00 0.00 3.28
128 129 4.339247 GTCCTATGGTTGGTGATGGATTTG 59.661 45.833 0.00 0.00 0.00 2.32
129 130 4.536765 GTCCTATGGTTGGTGATGGATTT 58.463 43.478 0.00 0.00 0.00 2.17
130 131 3.117512 GGTCCTATGGTTGGTGATGGATT 60.118 47.826 0.00 0.00 0.00 3.01
131 132 2.443255 GGTCCTATGGTTGGTGATGGAT 59.557 50.000 0.00 0.00 0.00 3.41
132 133 1.843851 GGTCCTATGGTTGGTGATGGA 59.156 52.381 0.00 0.00 0.00 3.41
133 134 1.475034 CGGTCCTATGGTTGGTGATGG 60.475 57.143 0.00 0.00 0.00 3.51
135 136 1.874129 TCGGTCCTATGGTTGGTGAT 58.126 50.000 0.00 0.00 0.00 3.06
136 137 1.484653 CATCGGTCCTATGGTTGGTGA 59.515 52.381 0.00 0.00 0.00 4.02
138 139 0.837272 CCATCGGTCCTATGGTTGGT 59.163 55.000 13.32 0.00 39.30 3.67
139 140 0.535102 GCCATCGGTCCTATGGTTGG 60.535 60.000 20.67 5.91 44.87 3.77
140 141 0.535102 GGCCATCGGTCCTATGGTTG 60.535 60.000 20.67 0.07 44.87 3.77
141 142 0.694444 AGGCCATCGGTCCTATGGTT 60.694 55.000 20.67 9.30 44.87 3.67
142 143 1.074471 AGGCCATCGGTCCTATGGT 60.074 57.895 20.67 2.52 44.87 3.55
143 144 1.674057 GAGGCCATCGGTCCTATGG 59.326 63.158 16.59 16.59 45.68 2.74
154 155 2.370445 CCTTCCCTGACGAGGCCAT 61.370 63.158 5.01 0.00 38.17 4.40
156 157 2.034048 GATCCTTCCCTGACGAGGCC 62.034 65.000 0.00 0.00 38.17 5.19
157 158 1.443828 GATCCTTCCCTGACGAGGC 59.556 63.158 0.00 0.00 38.17 4.70
158 159 1.739338 CGGATCCTTCCCTGACGAGG 61.739 65.000 10.75 0.00 39.01 4.63
160 161 0.323999 TTCGGATCCTTCCCTGACGA 60.324 55.000 10.75 0.00 39.01 4.20
161 162 0.535335 TTTCGGATCCTTCCCTGACG 59.465 55.000 10.75 0.00 39.01 4.35
163 164 3.523564 AGATTTTTCGGATCCTTCCCTGA 59.476 43.478 10.75 0.00 39.01 3.86
164 165 3.891049 AGATTTTTCGGATCCTTCCCTG 58.109 45.455 10.75 0.00 39.01 4.45
165 166 4.592997 AAGATTTTTCGGATCCTTCCCT 57.407 40.909 10.75 0.00 39.01 4.20
169 170 7.968405 CGTTGAATAAAGATTTTTCGGATCCTT 59.032 33.333 10.75 0.00 0.00 3.36
170 171 7.472543 CGTTGAATAAAGATTTTTCGGATCCT 58.527 34.615 10.75 0.00 0.00 3.24
173 174 6.616947 TGCGTTGAATAAAGATTTTTCGGAT 58.383 32.000 0.00 0.00 0.00 4.18
174 175 6.003234 TGCGTTGAATAAAGATTTTTCGGA 57.997 33.333 0.00 0.00 0.00 4.55
175 176 5.856455 ACTGCGTTGAATAAAGATTTTTCGG 59.144 36.000 0.00 0.00 0.00 4.30
176 177 6.577055 TGACTGCGTTGAATAAAGATTTTTCG 59.423 34.615 0.00 0.00 0.00 3.46
178 179 7.271223 CGATGACTGCGTTGAATAAAGATTTTT 59.729 33.333 0.00 0.00 0.00 1.94
179 180 6.742718 CGATGACTGCGTTGAATAAAGATTTT 59.257 34.615 0.00 0.00 0.00 1.82
180 181 6.128282 ACGATGACTGCGTTGAATAAAGATTT 60.128 34.615 0.00 0.00 39.18 2.17
181 182 5.351465 ACGATGACTGCGTTGAATAAAGATT 59.649 36.000 0.00 0.00 39.18 2.40
182 183 4.870426 ACGATGACTGCGTTGAATAAAGAT 59.130 37.500 0.00 0.00 39.18 2.40
183 184 4.242475 ACGATGACTGCGTTGAATAAAGA 58.758 39.130 0.00 0.00 39.18 2.52
185 186 3.060230 CGACGATGACTGCGTTGAATAAA 59.940 43.478 0.00 0.00 43.93 1.40
186 187 2.596862 CGACGATGACTGCGTTGAATAA 59.403 45.455 0.00 0.00 43.93 1.40
188 189 0.992072 CGACGATGACTGCGTTGAAT 59.008 50.000 0.00 0.00 43.93 2.57
189 190 1.614227 GCGACGATGACTGCGTTGAA 61.614 55.000 0.00 0.00 43.93 2.69
192 193 0.797249 GTAGCGACGATGACTGCGTT 60.797 55.000 0.00 0.00 42.77 4.84
193 194 1.226323 GTAGCGACGATGACTGCGT 60.226 57.895 0.00 0.00 45.79 5.24
194 195 1.939785 GGTAGCGACGATGACTGCG 60.940 63.158 0.00 0.00 0.00 5.18
195 196 1.939785 CGGTAGCGACGATGACTGC 60.940 63.158 9.07 0.00 0.00 4.40
196 197 0.098200 TTCGGTAGCGACGATGACTG 59.902 55.000 17.92 0.00 40.38 3.51
197 198 0.377554 CTTCGGTAGCGACGATGACT 59.622 55.000 17.92 0.00 40.38 3.41
200 201 3.601981 GCTTCGGTAGCGACGATG 58.398 61.111 22.92 11.98 40.71 3.84
208 209 2.876091 TCATCGTCTTTGCTTCGGTAG 58.124 47.619 0.00 0.00 0.00 3.18
209 210 2.991190 GTTCATCGTCTTTGCTTCGGTA 59.009 45.455 0.00 0.00 0.00 4.02
210 211 1.798813 GTTCATCGTCTTTGCTTCGGT 59.201 47.619 0.00 0.00 0.00 4.69
211 212 1.798223 TGTTCATCGTCTTTGCTTCGG 59.202 47.619 0.00 0.00 0.00 4.30
213 214 3.251004 AGGTTGTTCATCGTCTTTGCTTC 59.749 43.478 0.00 0.00 0.00 3.86
214 215 3.214328 AGGTTGTTCATCGTCTTTGCTT 58.786 40.909 0.00 0.00 0.00 3.91
215 216 2.851195 AGGTTGTTCATCGTCTTTGCT 58.149 42.857 0.00 0.00 0.00 3.91
216 217 4.742438 TTAGGTTGTTCATCGTCTTTGC 57.258 40.909 0.00 0.00 0.00 3.68
217 218 6.416750 GGTTTTTAGGTTGTTCATCGTCTTTG 59.583 38.462 0.00 0.00 0.00 2.77
218 219 6.320418 AGGTTTTTAGGTTGTTCATCGTCTTT 59.680 34.615 0.00 0.00 0.00 2.52
219 220 5.826208 AGGTTTTTAGGTTGTTCATCGTCTT 59.174 36.000 0.00 0.00 0.00 3.01
220 221 5.374071 AGGTTTTTAGGTTGTTCATCGTCT 58.626 37.500 0.00 0.00 0.00 4.18
221 222 5.684550 AGGTTTTTAGGTTGTTCATCGTC 57.315 39.130 0.00 0.00 0.00 4.20
222 223 6.426025 GTCTAGGTTTTTAGGTTGTTCATCGT 59.574 38.462 0.00 0.00 0.00 3.73
223 224 6.649557 AGTCTAGGTTTTTAGGTTGTTCATCG 59.350 38.462 0.00 0.00 0.00 3.84
224 225 7.981102 AGTCTAGGTTTTTAGGTTGTTCATC 57.019 36.000 0.00 0.00 0.00 2.92
226 227 7.794041 TGTAGTCTAGGTTTTTAGGTTGTTCA 58.206 34.615 0.00 0.00 0.00 3.18
227 228 8.667076 TTGTAGTCTAGGTTTTTAGGTTGTTC 57.333 34.615 0.00 0.00 0.00 3.18
228 229 7.718314 CCTTGTAGTCTAGGTTTTTAGGTTGTT 59.282 37.037 0.00 0.00 33.15 2.83
229 230 7.222161 CCTTGTAGTCTAGGTTTTTAGGTTGT 58.778 38.462 0.00 0.00 33.15 3.32
231 232 6.240089 CCCCTTGTAGTCTAGGTTTTTAGGTT 60.240 42.308 0.00 0.00 35.38 3.50
232 233 5.250082 CCCCTTGTAGTCTAGGTTTTTAGGT 59.750 44.000 0.00 0.00 35.38 3.08
233 234 5.338953 CCCCCTTGTAGTCTAGGTTTTTAGG 60.339 48.000 0.00 0.00 35.38 2.69
235 236 5.164897 ACCCCCTTGTAGTCTAGGTTTTTA 58.835 41.667 0.00 0.00 35.38 1.52
236 237 3.985452 ACCCCCTTGTAGTCTAGGTTTTT 59.015 43.478 0.00 0.00 35.38 1.94
239 240 4.424761 TTACCCCCTTGTAGTCTAGGTT 57.575 45.455 0.00 0.00 35.38 3.50
240 241 4.424761 TTTACCCCCTTGTAGTCTAGGT 57.575 45.455 0.00 0.00 35.38 3.08
241 242 5.494724 GTTTTTACCCCCTTGTAGTCTAGG 58.505 45.833 0.00 0.00 36.57 3.02
243 244 4.837860 TCGTTTTTACCCCCTTGTAGTCTA 59.162 41.667 0.00 0.00 0.00 2.59
245 246 4.006780 TCGTTTTTACCCCCTTGTAGTC 57.993 45.455 0.00 0.00 0.00 2.59
246 247 4.566278 GGATCGTTTTTACCCCCTTGTAGT 60.566 45.833 0.00 0.00 0.00 2.73
247 248 3.943381 GGATCGTTTTTACCCCCTTGTAG 59.057 47.826 0.00 0.00 0.00 2.74
248 249 3.330110 TGGATCGTTTTTACCCCCTTGTA 59.670 43.478 0.00 0.00 0.00 2.41
249 250 2.108601 TGGATCGTTTTTACCCCCTTGT 59.891 45.455 0.00 0.00 0.00 3.16
251 252 2.108601 TGTGGATCGTTTTTACCCCCTT 59.891 45.455 0.00 0.00 0.00 3.95
252 253 1.706305 TGTGGATCGTTTTTACCCCCT 59.294 47.619 0.00 0.00 0.00 4.79
253 254 1.814394 GTGTGGATCGTTTTTACCCCC 59.186 52.381 0.00 0.00 0.00 5.40
255 256 2.096119 CGTGTGTGGATCGTTTTTACCC 60.096 50.000 0.00 0.00 0.00 3.69
257 258 3.537806 CACGTGTGTGGATCGTTTTTAC 58.462 45.455 7.58 0.00 42.59 2.01
258 259 3.863396 CACGTGTGTGGATCGTTTTTA 57.137 42.857 7.58 0.00 42.59 1.52
259 260 2.748461 CACGTGTGTGGATCGTTTTT 57.252 45.000 7.58 0.00 42.59 1.94
269 270 0.170339 TCGCTAGATCCACGTGTGTG 59.830 55.000 15.65 0.00 46.00 3.82
271 272 0.525668 GGTCGCTAGATCCACGTGTG 60.526 60.000 15.65 6.24 0.00 3.82
273 274 1.065928 GGGTCGCTAGATCCACGTG 59.934 63.158 9.08 9.08 46.98 4.49
274 275 3.522808 GGGTCGCTAGATCCACGT 58.477 61.111 0.00 0.00 46.98 4.49
295 296 2.280524 CTTGGTTGTCGGTGGCGA 60.281 61.111 0.00 0.00 0.00 5.54
296 297 4.025401 GCTTGGTTGTCGGTGGCG 62.025 66.667 0.00 0.00 0.00 5.69
298 299 2.317609 CGAGCTTGGTTGTCGGTGG 61.318 63.158 0.00 0.00 0.00 4.61
300 301 1.300697 GTCGAGCTTGGTTGTCGGT 60.301 57.895 0.00 0.00 34.43 4.69
301 302 2.372690 CGTCGAGCTTGGTTGTCGG 61.373 63.158 0.00 0.00 34.43 4.79
302 303 3.000080 GCGTCGAGCTTGGTTGTCG 62.000 63.158 0.00 3.18 44.04 4.35
313 314 2.352457 CGATCTTCCGGCGTCGAG 60.352 66.667 12.93 0.00 39.00 4.04
314 315 3.884350 CCGATCTTCCGGCGTCGA 61.884 66.667 12.93 5.55 43.25 4.20
321 322 2.107141 GGAGTGGCCGATCTTCCG 59.893 66.667 0.00 0.00 0.00 4.30
323 324 1.144936 CCAGGAGTGGCCGATCTTC 59.855 63.158 0.00 0.00 43.43 2.87
324 325 3.313874 CCAGGAGTGGCCGATCTT 58.686 61.111 0.00 0.00 43.43 2.40
338 339 2.867855 TAATCCTAGCCGCCGCCAG 61.868 63.158 0.00 0.00 34.57 4.85
339 340 2.840572 TAATCCTAGCCGCCGCCA 60.841 61.111 0.00 0.00 34.57 5.69
340 341 2.357154 GTAATCCTAGCCGCCGCC 60.357 66.667 0.00 0.00 34.57 6.13
341 342 1.664965 CTGTAATCCTAGCCGCCGC 60.665 63.158 0.00 0.00 0.00 6.53
342 343 1.664965 GCTGTAATCCTAGCCGCCG 60.665 63.158 0.00 0.00 33.89 6.46
348 349 0.034059 CCTGGCGGCTGTAATCCTAG 59.966 60.000 11.43 0.00 0.00 3.02
349 350 1.407656 CCCTGGCGGCTGTAATCCTA 61.408 60.000 11.43 0.00 0.00 2.94
350 351 2.746375 CCCTGGCGGCTGTAATCCT 61.746 63.158 11.43 0.00 0.00 3.24
362 363 3.062466 GTTTTCCTCGCCCCTGGC 61.062 66.667 0.00 0.00 46.75 4.85
364 365 2.335712 GCTGTTTTCCTCGCCCCTG 61.336 63.158 0.00 0.00 0.00 4.45
365 366 2.034221 GCTGTTTTCCTCGCCCCT 59.966 61.111 0.00 0.00 0.00 4.79
366 367 2.282180 TGCTGTTTTCCTCGCCCC 60.282 61.111 0.00 0.00 0.00 5.80
367 368 2.954611 GTGCTGTTTTCCTCGCCC 59.045 61.111 0.00 0.00 0.00 6.13
368 369 2.556287 CGTGCTGTTTTCCTCGCC 59.444 61.111 0.00 0.00 0.00 5.54
370 371 2.170985 CGCGTGCTGTTTTCCTCG 59.829 61.111 0.00 0.00 0.00 4.63
371 372 2.127232 GCGCGTGCTGTTTTCCTC 60.127 61.111 15.02 0.00 38.39 3.71
393 394 0.965866 ATCTCAAGTGAGCCGACCGA 60.966 55.000 3.30 0.00 41.80 4.69
394 395 0.738975 TATCTCAAGTGAGCCGACCG 59.261 55.000 3.30 0.00 41.80 4.79
395 396 1.537135 GCTATCTCAAGTGAGCCGACC 60.537 57.143 3.30 0.00 41.80 4.79
397 398 0.747255 GGCTATCTCAAGTGAGCCGA 59.253 55.000 3.30 0.00 44.72 5.54
398 399 3.280920 GGCTATCTCAAGTGAGCCG 57.719 57.895 3.30 0.00 44.72 5.52
401 402 4.462508 TGAACAGGCTATCTCAAGTGAG 57.537 45.455 1.65 1.65 43.36 3.51
402 403 5.188555 AGAATGAACAGGCTATCTCAAGTGA 59.811 40.000 0.00 0.00 0.00 3.41
404 405 5.188555 TCAGAATGAACAGGCTATCTCAAGT 59.811 40.000 0.00 0.00 45.97 3.16
406 407 5.682234 TCAGAATGAACAGGCTATCTCAA 57.318 39.130 0.00 0.00 45.97 3.02
415 416 7.473474 CGTACGTACGTATCAGAATGAACAGG 61.473 46.154 33.95 7.71 46.57 4.00
416 417 5.391721 CGTACGTACGTATCAGAATGAACAG 59.608 44.000 33.95 9.07 46.57 3.16
417 418 5.257864 CGTACGTACGTATCAGAATGAACA 58.742 41.667 33.95 2.90 46.57 3.18
418 419 5.764038 CGTACGTACGTATCAGAATGAAC 57.236 43.478 33.95 14.74 46.57 3.18
433 434 4.062293 AGTGGTGTACAAGTACGTACGTA 58.938 43.478 23.60 23.60 43.89 3.57
434 435 2.878406 AGTGGTGTACAAGTACGTACGT 59.122 45.455 25.98 25.98 43.89 3.57
436 437 5.173854 GTCAAAGTGGTGTACAAGTACGTAC 59.826 44.000 18.10 18.10 41.78 3.67
437 438 5.280945 GTCAAAGTGGTGTACAAGTACGTA 58.719 41.667 0.00 0.00 38.85 3.57
438 439 4.114794 GTCAAAGTGGTGTACAAGTACGT 58.885 43.478 0.00 0.00 38.85 3.57
439 440 3.492011 GGTCAAAGTGGTGTACAAGTACG 59.508 47.826 0.00 0.00 38.85 3.67
440 441 3.811497 GGGTCAAAGTGGTGTACAAGTAC 59.189 47.826 0.00 3.47 36.63 2.73
441 442 3.712733 AGGGTCAAAGTGGTGTACAAGTA 59.287 43.478 0.00 0.00 0.00 2.24
442 443 2.508300 AGGGTCAAAGTGGTGTACAAGT 59.492 45.455 0.00 0.00 0.00 3.16
443 444 2.878406 CAGGGTCAAAGTGGTGTACAAG 59.122 50.000 0.00 0.00 0.00 3.16
444 445 2.506231 TCAGGGTCAAAGTGGTGTACAA 59.494 45.455 0.00 0.00 0.00 2.41
445 446 2.120312 TCAGGGTCAAAGTGGTGTACA 58.880 47.619 0.00 0.00 0.00 2.90
446 447 2.490991 GTCAGGGTCAAAGTGGTGTAC 58.509 52.381 0.00 0.00 0.00 2.90
447 448 1.418637 GGTCAGGGTCAAAGTGGTGTA 59.581 52.381 0.00 0.00 0.00 2.90
448 449 0.182775 GGTCAGGGTCAAAGTGGTGT 59.817 55.000 0.00 0.00 0.00 4.16
449 450 0.182537 TGGTCAGGGTCAAAGTGGTG 59.817 55.000 0.00 0.00 0.00 4.17
450 451 0.923358 TTGGTCAGGGTCAAAGTGGT 59.077 50.000 0.00 0.00 0.00 4.16
452 453 0.954452 GCTTGGTCAGGGTCAAAGTG 59.046 55.000 0.00 0.00 0.00 3.16
453 454 0.550914 TGCTTGGTCAGGGTCAAAGT 59.449 50.000 0.00 0.00 0.00 2.66
455 456 0.550914 AGTGCTTGGTCAGGGTCAAA 59.449 50.000 0.00 0.00 0.00 2.69
456 457 1.347707 CTAGTGCTTGGTCAGGGTCAA 59.652 52.381 0.00 0.00 0.00 3.18
458 459 0.391793 GCTAGTGCTTGGTCAGGGTC 60.392 60.000 0.00 0.00 36.03 4.46
459 460 1.127567 TGCTAGTGCTTGGTCAGGGT 61.128 55.000 0.00 0.00 40.48 4.34
460 461 0.036732 TTGCTAGTGCTTGGTCAGGG 59.963 55.000 0.00 0.00 40.48 4.45
461 462 1.808945 CTTTGCTAGTGCTTGGTCAGG 59.191 52.381 0.00 0.00 40.48 3.86
464 465 2.618709 ACAACTTTGCTAGTGCTTGGTC 59.381 45.455 0.00 0.00 37.12 4.02
465 466 2.618709 GACAACTTTGCTAGTGCTTGGT 59.381 45.455 0.00 0.00 37.12 3.67
466 467 2.030805 GGACAACTTTGCTAGTGCTTGG 60.031 50.000 0.00 0.00 37.12 3.61
468 469 2.230660 GGGACAACTTTGCTAGTGCTT 58.769 47.619 0.00 0.00 37.12 3.91
469 470 1.142870 TGGGACAACTTTGCTAGTGCT 59.857 47.619 0.00 0.00 37.12 4.40
472 473 2.548067 CGAGTGGGACAACTTTGCTAGT 60.548 50.000 0.00 0.00 44.16 2.57
474 475 1.689813 TCGAGTGGGACAACTTTGCTA 59.310 47.619 0.00 0.00 44.16 3.49
475 476 0.468226 TCGAGTGGGACAACTTTGCT 59.532 50.000 0.00 0.00 44.16 3.91
476 477 0.868406 CTCGAGTGGGACAACTTTGC 59.132 55.000 3.62 0.00 44.16 3.68
478 479 2.696707 TGTACTCGAGTGGGACAACTTT 59.303 45.455 28.12 0.00 44.16 2.66
479 480 2.313317 TGTACTCGAGTGGGACAACTT 58.687 47.619 28.12 0.00 44.16 2.66
480 481 1.991121 TGTACTCGAGTGGGACAACT 58.009 50.000 28.12 0.00 44.16 3.16
481 482 2.806608 TTGTACTCGAGTGGGACAAC 57.193 50.000 28.12 16.76 44.16 3.32
482 483 3.576982 AGAATTGTACTCGAGTGGGACAA 59.423 43.478 26.29 26.29 44.16 3.18
483 484 3.162666 AGAATTGTACTCGAGTGGGACA 58.837 45.455 28.12 20.64 0.00 4.02
484 485 3.444388 AGAGAATTGTACTCGAGTGGGAC 59.556 47.826 28.12 18.22 39.12 4.46
485 486 3.698289 AGAGAATTGTACTCGAGTGGGA 58.302 45.455 28.12 13.10 39.12 4.37
487 488 4.641094 ACCTAGAGAATTGTACTCGAGTGG 59.359 45.833 28.12 17.08 39.12 4.00
489 490 6.403418 CGAAACCTAGAGAATTGTACTCGAGT 60.403 42.308 23.66 23.66 39.12 4.18
494 495 5.419471 AGAGCGAAACCTAGAGAATTGTACT 59.581 40.000 0.00 0.00 0.00 2.73
495 496 5.652518 AGAGCGAAACCTAGAGAATTGTAC 58.347 41.667 0.00 0.00 0.00 2.90
496 497 5.916661 AGAGCGAAACCTAGAGAATTGTA 57.083 39.130 0.00 0.00 0.00 2.41
497 498 4.810191 AGAGCGAAACCTAGAGAATTGT 57.190 40.909 0.00 0.00 0.00 2.71
502 503 9.516546 TCATAATATAAGAGCGAAACCTAGAGA 57.483 33.333 0.00 0.00 0.00 3.10
504 505 9.516546 TCTCATAATATAAGAGCGAAACCTAGA 57.483 33.333 0.00 0.00 0.00 2.43
505 506 9.562583 GTCTCATAATATAAGAGCGAAACCTAG 57.437 37.037 0.00 0.00 0.00 3.02
506 507 8.235226 CGTCTCATAATATAAGAGCGAAACCTA 58.765 37.037 0.00 0.00 33.76 3.08
507 508 7.085116 CGTCTCATAATATAAGAGCGAAACCT 58.915 38.462 0.00 0.00 33.76 3.50
508 509 6.308282 CCGTCTCATAATATAAGAGCGAAACC 59.692 42.308 0.00 0.00 33.76 3.27
509 510 7.082602 TCCGTCTCATAATATAAGAGCGAAAC 58.917 38.462 0.00 0.00 33.76 2.78
510 511 7.210718 TCCGTCTCATAATATAAGAGCGAAA 57.789 36.000 0.00 0.00 33.76 3.46
512 513 5.354513 CCTCCGTCTCATAATATAAGAGCGA 59.645 44.000 0.00 0.00 33.76 4.93
513 514 5.354513 TCCTCCGTCTCATAATATAAGAGCG 59.645 44.000 0.00 0.00 0.00 5.03
514 515 6.761099 TCCTCCGTCTCATAATATAAGAGC 57.239 41.667 0.00 0.00 0.00 4.09
516 517 9.976776 ATACTTCCTCCGTCTCATAATATAAGA 57.023 33.333 0.00 0.00 0.00 2.10
521 522 9.976776 AAGATATACTTCCTCCGTCTCATAATA 57.023 33.333 0.00 0.00 32.91 0.98
522 523 8.887264 AAGATATACTTCCTCCGTCTCATAAT 57.113 34.615 0.00 0.00 32.91 1.28
523 524 9.228949 GTAAGATATACTTCCTCCGTCTCATAA 57.771 37.037 0.00 0.00 39.72 1.90
524 525 8.380867 TGTAAGATATACTTCCTCCGTCTCATA 58.619 37.037 0.00 0.00 39.72 2.15
525 526 7.232188 TGTAAGATATACTTCCTCCGTCTCAT 58.768 38.462 0.00 0.00 39.72 2.90
526 527 6.598503 TGTAAGATATACTTCCTCCGTCTCA 58.401 40.000 0.00 0.00 39.72 3.27
527 528 7.507733 TTGTAAGATATACTTCCTCCGTCTC 57.492 40.000 0.00 0.00 39.72 3.36
528 529 7.341256 TGTTTGTAAGATATACTTCCTCCGTCT 59.659 37.037 0.00 0.00 39.72 4.18
529 530 7.486647 TGTTTGTAAGATATACTTCCTCCGTC 58.513 38.462 0.00 0.00 39.72 4.79
530 531 7.414222 TGTTTGTAAGATATACTTCCTCCGT 57.586 36.000 0.00 0.00 39.72 4.69
531 532 8.195436 TCTTGTTTGTAAGATATACTTCCTCCG 58.805 37.037 0.00 0.00 39.72 4.63
532 533 9.886132 TTCTTGTTTGTAAGATATACTTCCTCC 57.114 33.333 0.00 0.00 39.72 4.30
537 538 9.367444 CCGTCTTCTTGTTTGTAAGATATACTT 57.633 33.333 0.00 0.00 42.04 2.24
538 539 7.980099 CCCGTCTTCTTGTTTGTAAGATATACT 59.020 37.037 0.00 0.00 36.63 2.12
539 540 7.977853 TCCCGTCTTCTTGTTTGTAAGATATAC 59.022 37.037 0.00 0.00 36.63 1.47
541 542 6.942976 TCCCGTCTTCTTGTTTGTAAGATAT 58.057 36.000 0.00 0.00 36.63 1.63
542 543 6.349243 TCCCGTCTTCTTGTTTGTAAGATA 57.651 37.500 0.00 0.00 36.63 1.98
543 544 5.223449 TCCCGTCTTCTTGTTTGTAAGAT 57.777 39.130 0.00 0.00 36.63 2.40
544 545 4.675976 TCCCGTCTTCTTGTTTGTAAGA 57.324 40.909 0.00 0.00 35.02 2.10
546 547 4.773013 ACTTCCCGTCTTCTTGTTTGTAA 58.227 39.130 0.00 0.00 0.00 2.41
547 548 4.411256 ACTTCCCGTCTTCTTGTTTGTA 57.589 40.909 0.00 0.00 0.00 2.41
548 549 3.277142 ACTTCCCGTCTTCTTGTTTGT 57.723 42.857 0.00 0.00 0.00 2.83
551 552 4.950205 TCTTACTTCCCGTCTTCTTGTT 57.050 40.909 0.00 0.00 0.00 2.83
552 553 4.950205 TTCTTACTTCCCGTCTTCTTGT 57.050 40.909 0.00 0.00 0.00 3.16
590 2658 0.454600 GTGCGACCGATCTGGACTAA 59.545 55.000 10.05 0.00 42.00 2.24
614 2682 4.641396 TGGGTACATGTCACTCTCAAAAG 58.359 43.478 0.00 0.00 0.00 2.27
641 2709 5.388786 GCATTTTTCTTCGCCTTTTTAGCTG 60.389 40.000 0.00 0.00 0.00 4.24
646 2714 3.809279 CCTGCATTTTTCTTCGCCTTTTT 59.191 39.130 0.00 0.00 0.00 1.94
688 2756 9.796120 ATTCTTGTTTGAATACTCGTTGAAAAA 57.204 25.926 0.00 0.00 35.18 1.94
689 2757 9.796120 AATTCTTGTTTGAATACTCGTTGAAAA 57.204 25.926 0.00 0.00 35.82 2.29
690 2758 9.232082 CAATTCTTGTTTGAATACTCGTTGAAA 57.768 29.630 0.00 0.00 35.82 2.69
700 2768 6.934645 ACTCTCGACCAATTCTTGTTTGAATA 59.065 34.615 0.00 0.00 35.82 1.75
722 2790 3.767673 TGGTATAAGTGGGAGTGTCACTC 59.232 47.826 22.61 22.61 43.82 3.51
784 2852 5.018809 TCATACGGTAGTAGAAAGTGGGTT 58.981 41.667 0.00 0.00 36.12 4.11
793 2861 2.260844 CCGGGTCATACGGTAGTAGA 57.739 55.000 0.00 0.00 46.03 2.59
801 2869 0.966920 AGGATTAGCCGGGTCATACG 59.033 55.000 10.79 0.00 43.43 3.06
1119 3188 3.630013 AGGAAGCAGAGCACCGCA 61.630 61.111 0.00 0.00 33.94 5.69
1230 3302 3.589654 CTTCTCGAGGCCACCGCAA 62.590 63.158 13.56 3.78 36.38 4.85
1282 3354 3.710722 CTCCCTCTGTTGCGGCCT 61.711 66.667 0.00 0.00 0.00 5.19
1760 4275 3.829044 CCCATGGCATGCACACCG 61.829 66.667 22.02 7.05 0.00 4.94
1772 4293 1.501337 CGGTGCATCATCGACCCATG 61.501 60.000 0.00 0.00 40.81 3.66
1791 4312 0.733150 GCTCCCGAAACATACCAAGC 59.267 55.000 0.00 0.00 0.00 4.01
1795 4316 2.178235 GCCGCTCCCGAAACATACC 61.178 63.158 0.00 0.00 36.29 2.73
1796 4317 0.103572 TAGCCGCTCCCGAAACATAC 59.896 55.000 0.00 0.00 36.29 2.39
1797 4318 0.103572 GTAGCCGCTCCCGAAACATA 59.896 55.000 0.00 0.00 36.29 2.29
1798 4319 1.153429 GTAGCCGCTCCCGAAACAT 60.153 57.895 0.00 0.00 36.29 2.71
1799 4320 2.263540 GTAGCCGCTCCCGAAACA 59.736 61.111 0.00 0.00 36.29 2.83
1845 4366 1.538512 CGAGTTTGGGTCAGTCGACTA 59.461 52.381 19.57 4.15 42.21 2.59
1904 4440 2.603776 AGGGAGTCCACCGGTGAC 60.604 66.667 36.07 27.84 34.83 3.67
1905 4441 2.603473 CAGGGAGTCCACCGGTGA 60.603 66.667 36.07 18.73 34.83 4.02
2218 5240 9.952030 TTGTTTTCTTAAAGGGTTTCATTCTTT 57.048 25.926 0.00 0.00 35.29 2.52
2248 5270 9.961266 ATTGTTTTGTTTAGTTTTAGTTTTCGC 57.039 25.926 0.00 0.00 0.00 4.70
2405 5428 4.640201 GTGCAATTTCAGGGCATACTTCTA 59.360 41.667 0.00 0.00 40.05 2.10
2407 5430 3.445096 AGTGCAATTTCAGGGCATACTTC 59.555 43.478 0.00 0.00 40.05 3.01
2519 5543 3.561310 GCAGGTATGATACACCATGTGTG 59.439 47.826 10.00 11.40 46.84 3.82
2521 5545 2.802247 CGCAGGTATGATACACCATGTG 59.198 50.000 4.83 1.12 38.62 3.21
2522 5546 2.434336 ACGCAGGTATGATACACCATGT 59.566 45.455 4.83 0.00 38.62 3.21
2523 5547 2.802247 CACGCAGGTATGATACACCATG 59.198 50.000 4.83 0.00 38.62 3.66
2524 5548 2.434336 ACACGCAGGTATGATACACCAT 59.566 45.455 4.83 0.00 38.62 3.55
2525 5549 1.828595 ACACGCAGGTATGATACACCA 59.171 47.619 4.83 0.00 38.62 4.17
2526 5550 2.596904 ACACGCAGGTATGATACACC 57.403 50.000 4.83 0.00 36.22 4.16
2527 5551 6.010294 ACTATACACGCAGGTATGATACAC 57.990 41.667 4.83 0.00 35.64 2.90
2528 5552 6.644248 AACTATACACGCAGGTATGATACA 57.356 37.500 4.83 0.00 35.64 2.29
2529 5553 7.814642 AGTAACTATACACGCAGGTATGATAC 58.185 38.462 7.35 0.00 35.64 2.24
2530 5554 7.991084 AGTAACTATACACGCAGGTATGATA 57.009 36.000 7.35 0.00 35.64 2.15
2531 5555 6.896021 AGTAACTATACACGCAGGTATGAT 57.104 37.500 7.35 0.00 35.64 2.45
2532 5556 6.704289 AAGTAACTATACACGCAGGTATGA 57.296 37.500 7.35 0.00 35.64 2.15
2533 5557 7.420002 TGTAAGTAACTATACACGCAGGTATG 58.580 38.462 7.35 1.87 35.64 2.39
2534 5558 7.572523 TGTAAGTAACTATACACGCAGGTAT 57.427 36.000 3.15 3.15 37.68 2.73
2535 5559 7.389803 TTGTAAGTAACTATACACGCAGGTA 57.610 36.000 0.00 0.00 34.29 3.08
2536 5560 5.902613 TGTAAGTAACTATACACGCAGGT 57.097 39.130 0.00 0.00 34.29 4.00
2537 5561 6.587226 TGTTTGTAAGTAACTATACACGCAGG 59.413 38.462 0.00 0.00 34.29 4.85
2538 5562 7.442657 GTGTTTGTAAGTAACTATACACGCAG 58.557 38.462 0.00 0.00 34.29 5.18
2539 5563 7.337150 GTGTTTGTAAGTAACTATACACGCA 57.663 36.000 0.00 0.00 34.29 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.