Multiple sequence alignment - TraesCS5D01G361300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G361300 chr5D 100.000 2876 0 0 1 2876 440787756 440790631 0.000000e+00 5312.0
1 TraesCS5D01G361300 chr5D 83.548 310 46 5 1088 1393 441113112 441112804 4.690000e-73 285.0
2 TraesCS5D01G361300 chr5D 87.324 142 14 4 1069 1209 440915891 440916029 2.970000e-35 159.0
3 TraesCS5D01G361300 chr5D 94.000 100 6 0 414 513 391949754 391949655 4.960000e-33 152.0
4 TraesCS5D01G361300 chr5D 91.743 109 7 1 414 520 33847921 33848029 1.790000e-32 150.0
5 TraesCS5D01G361300 chr5B 92.977 1495 80 9 704 2189 536316556 536318034 0.000000e+00 2156.0
6 TraesCS5D01G361300 chr5B 82.201 309 52 3 1088 1393 536688203 536687895 2.200000e-66 263.0
7 TraesCS5D01G361300 chr5B 89.706 204 12 1 499 702 536313459 536313653 4.760000e-63 252.0
8 TraesCS5D01G361300 chr5B 92.466 146 9 1 2548 2693 536318490 536318633 1.040000e-49 207.0
9 TraesCS5D01G361300 chr5A 93.099 710 38 6 847 1551 556783114 556783817 0.000000e+00 1029.0
10 TraesCS5D01G361300 chr5A 90.040 502 42 5 2230 2729 556826010 556825515 0.000000e+00 643.0
11 TraesCS5D01G361300 chr5A 91.262 309 24 2 1544 1849 556826599 556826291 4.430000e-113 418.0
12 TraesCS5D01G361300 chr5A 88.571 280 22 5 1894 2172 556826282 556826012 5.940000e-87 331.0
13 TraesCS5D01G361300 chr5A 92.913 127 9 0 499 625 556782651 556782777 4.890000e-43 185.0
14 TraesCS5D01G361300 chr5A 82.990 194 28 3 1085 1274 557477253 557477061 1.370000e-38 171.0
15 TraesCS5D01G361300 chr5A 89.888 89 9 0 2743 2831 556824778 556824690 6.510000e-22 115.0
16 TraesCS5D01G361300 chr5A 81.081 148 19 9 1075 1219 77791589 77791448 3.030000e-20 110.0
17 TraesCS5D01G361300 chr5A 94.872 39 2 0 2193 2231 665670591 665670553 8.600000e-06 62.1
18 TraesCS5D01G361300 chr2A 94.183 361 14 1 1 361 682115804 682115451 7.010000e-151 544.0
19 TraesCS5D01G361300 chr2A 95.000 40 2 0 2192 2231 553770263 553770224 2.390000e-06 63.9
20 TraesCS5D01G361300 chr2B 93.407 364 16 2 1 364 754991164 754991519 1.520000e-147 532.0
21 TraesCS5D01G361300 chr7B 87.417 151 15 3 554 702 598479063 598479211 1.370000e-38 171.0
22 TraesCS5D01G361300 chr7B 96.774 93 3 0 414 506 304791457 304791365 3.840000e-34 156.0
23 TraesCS5D01G361300 chr7B 93.269 104 6 1 414 517 726807732 726807630 4.960000e-33 152.0
24 TraesCS5D01G361300 chr1D 96.875 96 3 0 414 509 396748717 396748622 8.250000e-36 161.0
25 TraesCS5D01G361300 chr4B 95.789 95 4 0 414 508 347231213 347231119 1.380000e-33 154.0
26 TraesCS5D01G361300 chr4B 93.269 104 4 3 414 514 560761458 560761561 1.790000e-32 150.0
27 TraesCS5D01G361300 chr6A 93.939 99 6 0 414 512 575366357 575366455 1.790000e-32 150.0
28 TraesCS5D01G361300 chr4D 94.845 97 4 1 414 510 32136056 32136151 1.790000e-32 150.0
29 TraesCS5D01G361300 chr6D 79.870 154 23 7 1074 1223 71053194 71053045 3.920000e-19 106.0
30 TraesCS5D01G361300 chr7A 79.874 159 18 11 1068 1219 700679493 700679342 1.410000e-18 104.0
31 TraesCS5D01G361300 chr7A 95.000 40 2 0 2193 2232 675073812 675073851 2.390000e-06 63.9
32 TraesCS5D01G361300 chr4A 100.000 37 0 0 2192 2228 22532627 22532591 5.140000e-08 69.4
33 TraesCS5D01G361300 chr4A 89.362 47 3 2 2183 2228 516177718 516177673 1.110000e-04 58.4
34 TraesCS5D01G361300 chr6B 95.122 41 2 0 2193 2233 47272839 47272799 6.650000e-07 65.8
35 TraesCS5D01G361300 chr3A 100.000 35 0 0 2193 2227 492057242 492057208 6.650000e-07 65.8
36 TraesCS5D01G361300 chr3D 94.872 39 2 0 2193 2231 573123564 573123526 8.600000e-06 62.1
37 TraesCS5D01G361300 chr2D 90.909 44 3 1 2193 2235 127520545 127520588 1.110000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G361300 chr5D 440787756 440790631 2875 False 5312.000000 5312 100.000000 1 2876 1 chr5D.!!$F2 2875
1 TraesCS5D01G361300 chr5B 536313459 536318633 5174 False 871.666667 2156 91.716333 499 2693 3 chr5B.!!$F1 2194
2 TraesCS5D01G361300 chr5A 556782651 556783817 1166 False 607.000000 1029 93.006000 499 1551 2 chr5A.!!$F1 1052
3 TraesCS5D01G361300 chr5A 556824690 556826599 1909 True 376.750000 643 89.940250 1544 2831 4 chr5A.!!$R4 1287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 445 0.027586 GTTAATGCACGGCGCCTAAG 59.972 55.0 26.68 15.01 41.33 2.18 F
453 454 0.165944 CGGCGCCTAAGTGTTTTGAG 59.834 55.0 26.68 0.00 0.00 3.02 F
647 935 0.951558 TTTGGAGCGAAGAAACAGGC 59.048 50.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1333 4530 0.391263 AACAAGCGGTCGATCTTCCC 60.391 55.0 0.0 0.0 0.0 3.97 R
1836 5042 0.532862 AGCCAGACACCGTCAGTTTG 60.533 55.0 0.0 0.0 34.6 2.93 R
2477 5748 0.320050 TCGTAGCTGTGTTGGATGCA 59.680 50.0 0.0 0.0 0.0 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.968971 ATGATCTCTGACCATATGCACA 57.031 40.909 0.00 0.00 0.00 4.57
22 23 4.063998 TGATCTCTGACCATATGCACAC 57.936 45.455 0.00 0.00 0.00 3.82
23 24 2.584492 TCTCTGACCATATGCACACG 57.416 50.000 0.00 0.00 0.00 4.49
24 25 1.824852 TCTCTGACCATATGCACACGT 59.175 47.619 0.00 0.00 0.00 4.49
25 26 2.233676 TCTCTGACCATATGCACACGTT 59.766 45.455 0.00 0.00 0.00 3.99
26 27 2.604914 CTCTGACCATATGCACACGTTC 59.395 50.000 0.00 0.00 0.00 3.95
27 28 1.665679 CTGACCATATGCACACGTTCC 59.334 52.381 0.00 0.00 0.00 3.62
28 29 1.002544 TGACCATATGCACACGTTCCA 59.997 47.619 0.00 0.00 0.00 3.53
29 30 2.080693 GACCATATGCACACGTTCCAA 58.919 47.619 0.00 0.00 0.00 3.53
30 31 2.486203 GACCATATGCACACGTTCCAAA 59.514 45.455 0.00 0.00 0.00 3.28
31 32 3.088532 ACCATATGCACACGTTCCAAAT 58.911 40.909 0.00 0.00 0.00 2.32
32 33 3.128589 ACCATATGCACACGTTCCAAATC 59.871 43.478 0.00 0.00 0.00 2.17
33 34 3.489059 CCATATGCACACGTTCCAAATCC 60.489 47.826 0.00 0.00 0.00 3.01
34 35 0.887933 ATGCACACGTTCCAAATCCC 59.112 50.000 0.00 0.00 0.00 3.85
35 36 0.179004 TGCACACGTTCCAAATCCCT 60.179 50.000 0.00 0.00 0.00 4.20
36 37 0.521735 GCACACGTTCCAAATCCCTC 59.478 55.000 0.00 0.00 0.00 4.30
37 38 1.165270 CACACGTTCCAAATCCCTCC 58.835 55.000 0.00 0.00 0.00 4.30
38 39 1.064825 ACACGTTCCAAATCCCTCCT 58.935 50.000 0.00 0.00 0.00 3.69
39 40 1.003233 ACACGTTCCAAATCCCTCCTC 59.997 52.381 0.00 0.00 0.00 3.71
40 41 1.003118 CACGTTCCAAATCCCTCCTCA 59.997 52.381 0.00 0.00 0.00 3.86
41 42 1.916181 ACGTTCCAAATCCCTCCTCAT 59.084 47.619 0.00 0.00 0.00 2.90
42 43 2.092914 ACGTTCCAAATCCCTCCTCATC 60.093 50.000 0.00 0.00 0.00 2.92
43 44 2.171448 CGTTCCAAATCCCTCCTCATCT 59.829 50.000 0.00 0.00 0.00 2.90
44 45 3.549794 GTTCCAAATCCCTCCTCATCTG 58.450 50.000 0.00 0.00 0.00 2.90
45 46 1.492176 TCCAAATCCCTCCTCATCTGC 59.508 52.381 0.00 0.00 0.00 4.26
46 47 1.213678 CCAAATCCCTCCTCATCTGCA 59.786 52.381 0.00 0.00 0.00 4.41
47 48 2.158505 CCAAATCCCTCCTCATCTGCAT 60.159 50.000 0.00 0.00 0.00 3.96
48 49 3.147629 CAAATCCCTCCTCATCTGCATC 58.852 50.000 0.00 0.00 0.00 3.91
49 50 2.113807 ATCCCTCCTCATCTGCATCA 57.886 50.000 0.00 0.00 0.00 3.07
50 51 1.883678 TCCCTCCTCATCTGCATCAA 58.116 50.000 0.00 0.00 0.00 2.57
51 52 2.415624 TCCCTCCTCATCTGCATCAAT 58.584 47.619 0.00 0.00 0.00 2.57
52 53 2.781757 TCCCTCCTCATCTGCATCAATT 59.218 45.455 0.00 0.00 0.00 2.32
53 54 3.203710 TCCCTCCTCATCTGCATCAATTT 59.796 43.478 0.00 0.00 0.00 1.82
54 55 3.568853 CCCTCCTCATCTGCATCAATTTC 59.431 47.826 0.00 0.00 0.00 2.17
55 56 4.462133 CCTCCTCATCTGCATCAATTTCT 58.538 43.478 0.00 0.00 0.00 2.52
56 57 4.276183 CCTCCTCATCTGCATCAATTTCTG 59.724 45.833 0.00 0.00 0.00 3.02
57 58 5.106876 TCCTCATCTGCATCAATTTCTGA 57.893 39.130 0.00 0.00 38.81 3.27
58 59 4.880120 TCCTCATCTGCATCAATTTCTGAC 59.120 41.667 0.00 0.00 36.69 3.51
59 60 4.036498 CCTCATCTGCATCAATTTCTGACC 59.964 45.833 0.00 0.00 36.69 4.02
60 61 3.624410 TCATCTGCATCAATTTCTGACCG 59.376 43.478 0.00 0.00 36.69 4.79
61 62 3.333029 TCTGCATCAATTTCTGACCGA 57.667 42.857 0.00 0.00 36.69 4.69
62 63 3.877559 TCTGCATCAATTTCTGACCGAT 58.122 40.909 0.00 0.00 36.69 4.18
63 64 4.264253 TCTGCATCAATTTCTGACCGATT 58.736 39.130 0.00 0.00 36.69 3.34
64 65 4.701651 TCTGCATCAATTTCTGACCGATTT 59.298 37.500 0.00 0.00 36.69 2.17
65 66 5.183713 TCTGCATCAATTTCTGACCGATTTT 59.816 36.000 0.00 0.00 36.69 1.82
66 67 5.782047 TGCATCAATTTCTGACCGATTTTT 58.218 33.333 0.00 0.00 36.69 1.94
85 86 4.941609 CCAGTCCCTGGTCAATCG 57.058 61.111 1.99 0.00 45.82 3.34
86 87 1.450312 CCAGTCCCTGGTCAATCGC 60.450 63.158 1.99 0.00 45.82 4.58
87 88 1.450312 CAGTCCCTGGTCAATCGCC 60.450 63.158 0.00 0.00 0.00 5.54
88 89 2.124695 GTCCCTGGTCAATCGCCC 60.125 66.667 0.00 0.00 0.00 6.13
89 90 3.781307 TCCCTGGTCAATCGCCCG 61.781 66.667 0.00 0.00 0.00 6.13
90 91 3.781307 CCCTGGTCAATCGCCCGA 61.781 66.667 0.00 0.00 0.00 5.14
91 92 2.505982 CCTGGTCAATCGCCCGAT 59.494 61.111 0.00 0.00 36.23 4.18
92 93 1.595382 CCTGGTCAATCGCCCGATC 60.595 63.158 3.41 0.00 33.08 3.69
93 94 1.443407 CTGGTCAATCGCCCGATCT 59.557 57.895 3.41 0.00 33.08 2.75
94 95 0.877649 CTGGTCAATCGCCCGATCTG 60.878 60.000 3.41 5.36 33.08 2.90
95 96 1.326951 TGGTCAATCGCCCGATCTGA 61.327 55.000 3.41 7.36 33.08 3.27
96 97 0.179084 GGTCAATCGCCCGATCTGAA 60.179 55.000 3.41 0.00 33.08 3.02
97 98 1.651987 GTCAATCGCCCGATCTGAAA 58.348 50.000 3.41 0.00 33.08 2.69
98 99 1.327764 GTCAATCGCCCGATCTGAAAC 59.672 52.381 3.41 0.00 33.08 2.78
99 100 0.657840 CAATCGCCCGATCTGAAACC 59.342 55.000 3.41 0.00 33.08 3.27
100 101 0.541863 AATCGCCCGATCTGAAACCT 59.458 50.000 3.41 0.00 33.08 3.50
101 102 0.541863 ATCGCCCGATCTGAAACCTT 59.458 50.000 0.00 0.00 0.00 3.50
102 103 0.108329 TCGCCCGATCTGAAACCTTC 60.108 55.000 0.00 0.00 0.00 3.46
103 104 1.090052 CGCCCGATCTGAAACCTTCC 61.090 60.000 0.00 0.00 0.00 3.46
104 105 0.253327 GCCCGATCTGAAACCTTCCT 59.747 55.000 0.00 0.00 0.00 3.36
105 106 2.014068 GCCCGATCTGAAACCTTCCTG 61.014 57.143 0.00 0.00 0.00 3.86
106 107 1.373570 CCGATCTGAAACCTTCCTGC 58.626 55.000 0.00 0.00 0.00 4.85
107 108 1.339055 CCGATCTGAAACCTTCCTGCA 60.339 52.381 0.00 0.00 0.00 4.41
108 109 2.005451 CGATCTGAAACCTTCCTGCAG 58.995 52.381 6.78 6.78 0.00 4.41
109 110 2.613977 CGATCTGAAACCTTCCTGCAGT 60.614 50.000 13.81 0.00 0.00 4.40
110 111 2.550830 TCTGAAACCTTCCTGCAGTC 57.449 50.000 13.81 1.91 0.00 3.51
111 112 2.050144 TCTGAAACCTTCCTGCAGTCT 58.950 47.619 13.81 0.00 0.00 3.24
112 113 2.439507 TCTGAAACCTTCCTGCAGTCTT 59.560 45.455 13.81 0.00 0.00 3.01
113 114 2.810852 CTGAAACCTTCCTGCAGTCTTC 59.189 50.000 13.81 6.39 0.00 2.87
114 115 2.155279 GAAACCTTCCTGCAGTCTTCC 58.845 52.381 13.81 0.00 0.00 3.46
115 116 1.140312 AACCTTCCTGCAGTCTTCCA 58.860 50.000 13.81 0.00 0.00 3.53
116 117 0.689623 ACCTTCCTGCAGTCTTCCAG 59.310 55.000 13.81 0.00 0.00 3.86
117 118 0.979665 CCTTCCTGCAGTCTTCCAGA 59.020 55.000 13.81 0.00 0.00 3.86
118 119 1.558756 CCTTCCTGCAGTCTTCCAGAT 59.441 52.381 13.81 0.00 0.00 2.90
119 120 2.026449 CCTTCCTGCAGTCTTCCAGATT 60.026 50.000 13.81 0.00 0.00 2.40
120 121 3.269178 CTTCCTGCAGTCTTCCAGATTC 58.731 50.000 13.81 0.00 0.00 2.52
121 122 2.544721 TCCTGCAGTCTTCCAGATTCT 58.455 47.619 13.81 0.00 0.00 2.40
122 123 2.909006 TCCTGCAGTCTTCCAGATTCTT 59.091 45.455 13.81 0.00 0.00 2.52
123 124 3.328931 TCCTGCAGTCTTCCAGATTCTTT 59.671 43.478 13.81 0.00 0.00 2.52
124 125 3.688673 CCTGCAGTCTTCCAGATTCTTTC 59.311 47.826 13.81 0.00 0.00 2.62
125 126 3.679389 TGCAGTCTTCCAGATTCTTTCC 58.321 45.455 0.00 0.00 0.00 3.13
126 127 3.072915 TGCAGTCTTCCAGATTCTTTCCA 59.927 43.478 0.00 0.00 0.00 3.53
127 128 3.438434 GCAGTCTTCCAGATTCTTTCCAC 59.562 47.826 0.00 0.00 0.00 4.02
128 129 4.805609 GCAGTCTTCCAGATTCTTTCCACT 60.806 45.833 0.00 0.00 0.00 4.00
129 130 4.694509 CAGTCTTCCAGATTCTTTCCACTG 59.305 45.833 0.00 0.00 0.00 3.66
130 131 3.438434 GTCTTCCAGATTCTTTCCACTGC 59.562 47.826 0.00 0.00 0.00 4.40
131 132 2.099141 TCCAGATTCTTTCCACTGCG 57.901 50.000 0.00 0.00 0.00 5.18
132 133 1.089920 CCAGATTCTTTCCACTGCGG 58.910 55.000 0.00 0.00 0.00 5.69
133 134 1.339055 CCAGATTCTTTCCACTGCGGA 60.339 52.381 0.00 0.00 44.40 5.54
134 135 2.636830 CAGATTCTTTCCACTGCGGAT 58.363 47.619 0.00 0.00 45.80 4.18
135 136 2.611292 CAGATTCTTTCCACTGCGGATC 59.389 50.000 0.00 0.00 45.80 3.36
136 137 2.503356 AGATTCTTTCCACTGCGGATCT 59.497 45.455 0.00 0.00 45.80 2.75
137 138 2.859165 TTCTTTCCACTGCGGATCTT 57.141 45.000 0.00 0.00 45.80 2.40
138 139 2.099141 TCTTTCCACTGCGGATCTTG 57.901 50.000 0.00 0.00 45.80 3.02
139 140 0.449388 CTTTCCACTGCGGATCTTGC 59.551 55.000 0.00 3.88 45.80 4.01
140 141 0.036732 TTTCCACTGCGGATCTTGCT 59.963 50.000 0.00 0.00 45.80 3.91
141 142 0.391661 TTCCACTGCGGATCTTGCTC 60.392 55.000 0.00 0.00 45.80 4.26
142 143 1.220206 CCACTGCGGATCTTGCTCT 59.780 57.895 0.00 0.00 36.56 4.09
143 144 0.392193 CCACTGCGGATCTTGCTCTT 60.392 55.000 0.00 0.00 36.56 2.85
144 145 1.446907 CACTGCGGATCTTGCTCTTT 58.553 50.000 0.00 0.00 0.00 2.52
145 146 1.129998 CACTGCGGATCTTGCTCTTTG 59.870 52.381 0.00 1.40 0.00 2.77
146 147 0.098376 CTGCGGATCTTGCTCTTTGC 59.902 55.000 10.94 0.00 43.25 3.68
147 148 1.308069 TGCGGATCTTGCTCTTTGCC 61.308 55.000 10.94 0.00 42.00 4.52
148 149 1.308069 GCGGATCTTGCTCTTTGCCA 61.308 55.000 3.64 0.00 42.00 4.92
149 150 1.167851 CGGATCTTGCTCTTTGCCAA 58.832 50.000 0.00 0.00 42.00 4.52
150 151 1.747355 CGGATCTTGCTCTTTGCCAAT 59.253 47.619 0.00 0.00 42.00 3.16
151 152 2.223433 CGGATCTTGCTCTTTGCCAATC 60.223 50.000 0.00 0.00 42.00 2.67
152 153 3.022406 GGATCTTGCTCTTTGCCAATCT 58.978 45.455 0.00 0.00 42.00 2.40
153 154 3.181489 GGATCTTGCTCTTTGCCAATCTG 60.181 47.826 0.00 0.00 42.00 2.90
154 155 1.542915 TCTTGCTCTTTGCCAATCTGC 59.457 47.619 0.00 0.00 42.00 4.26
155 156 1.271379 CTTGCTCTTTGCCAATCTGCA 59.729 47.619 0.00 0.00 42.00 4.41
156 157 0.885879 TGCTCTTTGCCAATCTGCAG 59.114 50.000 7.63 7.63 43.21 4.41
157 158 1.171308 GCTCTTTGCCAATCTGCAGA 58.829 50.000 20.79 20.79 43.21 4.26
158 159 1.135460 GCTCTTTGCCAATCTGCAGAC 60.135 52.381 20.97 6.85 43.21 3.51
159 160 1.471684 CTCTTTGCCAATCTGCAGACC 59.528 52.381 20.97 8.49 43.21 3.85
160 161 0.169672 CTTTGCCAATCTGCAGACCG 59.830 55.000 20.97 12.95 43.21 4.79
161 162 1.865788 TTTGCCAATCTGCAGACCGC 61.866 55.000 20.97 20.08 43.21 5.68
170 171 2.581354 GCAGACCGCAGTCCTCAT 59.419 61.111 0.00 0.00 44.72 2.90
171 172 1.520342 GCAGACCGCAGTCCTCATC 60.520 63.158 0.00 0.00 44.72 2.92
172 173 1.142748 CAGACCGCAGTCCTCATCC 59.857 63.158 0.00 0.00 44.72 3.51
173 174 1.000993 AGACCGCAGTCCTCATCCT 59.999 57.895 0.00 0.00 44.72 3.24
174 175 1.142748 GACCGCAGTCCTCATCCTG 59.857 63.158 0.00 0.00 37.00 3.86
175 176 1.305297 ACCGCAGTCCTCATCCTGA 60.305 57.895 0.00 0.00 0.00 3.86
176 177 0.689080 ACCGCAGTCCTCATCCTGAT 60.689 55.000 0.00 0.00 0.00 2.90
177 178 0.033228 CCGCAGTCCTCATCCTGATC 59.967 60.000 0.00 0.00 0.00 2.92
178 179 0.033228 CGCAGTCCTCATCCTGATCC 59.967 60.000 0.00 0.00 0.00 3.36
179 180 1.126488 GCAGTCCTCATCCTGATCCA 58.874 55.000 0.00 0.00 0.00 3.41
180 181 1.698532 GCAGTCCTCATCCTGATCCAT 59.301 52.381 0.00 0.00 0.00 3.41
181 182 2.550423 GCAGTCCTCATCCTGATCCATG 60.550 54.545 0.00 0.00 0.00 3.66
182 183 2.970640 CAGTCCTCATCCTGATCCATGA 59.029 50.000 0.00 0.00 0.00 3.07
183 184 3.007074 CAGTCCTCATCCTGATCCATGAG 59.993 52.174 15.05 15.05 43.94 2.90
184 185 2.971330 GTCCTCATCCTGATCCATGAGT 59.029 50.000 18.29 0.00 43.14 3.41
185 186 3.006752 GTCCTCATCCTGATCCATGAGTC 59.993 52.174 18.29 11.19 43.14 3.36
186 187 2.029200 CCTCATCCTGATCCATGAGTCG 60.029 54.545 18.29 6.84 43.14 4.18
187 188 1.342496 TCATCCTGATCCATGAGTCGC 59.658 52.381 0.00 0.00 0.00 5.19
188 189 0.316522 ATCCTGATCCATGAGTCGCG 59.683 55.000 0.00 0.00 0.00 5.87
189 190 1.300465 CCTGATCCATGAGTCGCGG 60.300 63.158 6.13 0.00 0.00 6.46
190 191 1.735973 CTGATCCATGAGTCGCGGA 59.264 57.895 6.13 3.01 0.00 5.54
191 192 0.318529 CTGATCCATGAGTCGCGGAG 60.319 60.000 6.13 0.00 30.84 4.63
192 193 1.037579 TGATCCATGAGTCGCGGAGT 61.038 55.000 6.13 0.00 30.84 3.85
193 194 0.318275 GATCCATGAGTCGCGGAGTC 60.318 60.000 6.13 6.36 33.05 3.36
194 195 1.739338 ATCCATGAGTCGCGGAGTCC 61.739 60.000 6.13 0.00 31.54 3.85
195 196 2.105128 CATGAGTCGCGGAGTCCC 59.895 66.667 6.13 0.00 31.54 4.46
196 197 2.362503 ATGAGTCGCGGAGTCCCA 60.363 61.111 6.13 0.00 31.54 4.37
197 198 2.418910 ATGAGTCGCGGAGTCCCAG 61.419 63.158 6.13 0.00 31.54 4.45
198 199 3.827898 GAGTCGCGGAGTCCCAGG 61.828 72.222 6.13 0.00 0.00 4.45
204 205 4.400251 CGGAGTCCCAGGGGGTCT 62.400 72.222 5.33 1.84 43.52 3.85
207 208 3.208592 AGTCCCAGGGGGTCTCCA 61.209 66.667 5.33 0.00 44.74 3.86
208 209 2.042930 GTCCCAGGGGGTCTCCAT 59.957 66.667 5.33 0.00 44.74 3.41
209 210 2.073101 GTCCCAGGGGGTCTCCATC 61.073 68.421 5.33 0.00 44.74 3.51
210 211 2.264378 TCCCAGGGGGTCTCCATCT 61.264 63.158 5.33 0.00 44.74 2.90
211 212 1.308216 CCCAGGGGGTCTCCATCTT 60.308 63.158 0.00 0.00 38.25 2.40
212 213 1.348775 CCCAGGGGGTCTCCATCTTC 61.349 65.000 0.00 0.00 38.25 2.87
213 214 0.621571 CCAGGGGGTCTCCATCTTCA 60.622 60.000 0.00 0.00 37.22 3.02
214 215 1.516110 CAGGGGGTCTCCATCTTCAT 58.484 55.000 0.00 0.00 37.22 2.57
215 216 1.419387 CAGGGGGTCTCCATCTTCATC 59.581 57.143 0.00 0.00 37.22 2.92
216 217 0.394565 GGGGGTCTCCATCTTCATCG 59.605 60.000 0.00 0.00 37.22 3.84
217 218 0.394565 GGGGTCTCCATCTTCATCGG 59.605 60.000 0.00 0.00 35.00 4.18
218 219 0.250081 GGGTCTCCATCTTCATCGGC 60.250 60.000 0.00 0.00 0.00 5.54
219 220 0.598680 GGTCTCCATCTTCATCGGCG 60.599 60.000 0.00 0.00 0.00 6.46
220 221 0.598680 GTCTCCATCTTCATCGGCGG 60.599 60.000 7.21 0.00 0.00 6.13
221 222 1.958205 CTCCATCTTCATCGGCGGC 60.958 63.158 7.21 0.00 0.00 6.53
222 223 2.974698 CCATCTTCATCGGCGGCC 60.975 66.667 9.54 9.54 0.00 6.13
223 224 2.974698 CATCTTCATCGGCGGCCC 60.975 66.667 14.55 0.00 0.00 5.80
242 243 4.787280 CGGCCCTCAGGTCCCTCT 62.787 72.222 0.00 0.00 32.27 3.69
243 244 2.766229 GGCCCTCAGGTCCCTCTC 60.766 72.222 0.00 0.00 34.57 3.20
244 245 3.151022 GCCCTCAGGTCCCTCTCG 61.151 72.222 0.00 0.00 34.57 4.04
245 246 2.360980 CCCTCAGGTCCCTCTCGT 59.639 66.667 0.00 0.00 0.00 4.18
246 247 1.613610 CCCTCAGGTCCCTCTCGTA 59.386 63.158 0.00 0.00 0.00 3.43
247 248 0.752376 CCCTCAGGTCCCTCTCGTAC 60.752 65.000 0.00 0.00 0.00 3.67
248 249 0.256464 CCTCAGGTCCCTCTCGTACT 59.744 60.000 0.00 0.00 0.00 2.73
249 250 1.670791 CTCAGGTCCCTCTCGTACTC 58.329 60.000 0.00 0.00 0.00 2.59
250 251 1.210967 CTCAGGTCCCTCTCGTACTCT 59.789 57.143 0.00 0.00 0.00 3.24
251 252 1.209990 TCAGGTCCCTCTCGTACTCTC 59.790 57.143 0.00 0.00 0.00 3.20
252 253 1.210967 CAGGTCCCTCTCGTACTCTCT 59.789 57.143 0.00 0.00 0.00 3.10
253 254 1.487558 AGGTCCCTCTCGTACTCTCTC 59.512 57.143 0.00 0.00 0.00 3.20
254 255 1.487558 GGTCCCTCTCGTACTCTCTCT 59.512 57.143 0.00 0.00 0.00 3.10
255 256 2.484241 GGTCCCTCTCGTACTCTCTCTC 60.484 59.091 0.00 0.00 0.00 3.20
256 257 2.168936 GTCCCTCTCGTACTCTCTCTCA 59.831 54.545 0.00 0.00 0.00 3.27
257 258 2.168936 TCCCTCTCGTACTCTCTCTCAC 59.831 54.545 0.00 0.00 0.00 3.51
258 259 2.169769 CCCTCTCGTACTCTCTCTCACT 59.830 54.545 0.00 0.00 0.00 3.41
259 260 3.385433 CCCTCTCGTACTCTCTCTCACTA 59.615 52.174 0.00 0.00 0.00 2.74
260 261 4.500887 CCCTCTCGTACTCTCTCTCACTAG 60.501 54.167 0.00 0.00 0.00 2.57
261 262 4.500887 CCTCTCGTACTCTCTCTCACTAGG 60.501 54.167 0.00 0.00 0.00 3.02
262 263 4.025360 TCTCGTACTCTCTCTCACTAGGT 58.975 47.826 0.00 0.00 0.00 3.08
263 264 4.116961 CTCGTACTCTCTCTCACTAGGTG 58.883 52.174 0.00 0.00 34.45 4.00
264 265 3.118702 TCGTACTCTCTCTCACTAGGTGG 60.119 52.174 0.00 0.00 33.87 4.61
265 266 3.118702 CGTACTCTCTCTCACTAGGTGGA 60.119 52.174 0.00 0.00 33.87 4.02
266 267 4.443739 CGTACTCTCTCTCACTAGGTGGAT 60.444 50.000 0.00 0.00 33.87 3.41
267 268 4.601406 ACTCTCTCTCACTAGGTGGATT 57.399 45.455 0.00 0.00 33.87 3.01
268 269 4.532834 ACTCTCTCTCACTAGGTGGATTC 58.467 47.826 0.00 0.00 33.87 2.52
269 270 4.229582 ACTCTCTCTCACTAGGTGGATTCT 59.770 45.833 0.00 0.00 33.87 2.40
270 271 4.531854 TCTCTCTCACTAGGTGGATTCTG 58.468 47.826 0.00 0.00 33.87 3.02
271 272 3.636300 CTCTCTCACTAGGTGGATTCTGG 59.364 52.174 0.00 0.00 33.87 3.86
272 273 3.269643 TCTCTCACTAGGTGGATTCTGGA 59.730 47.826 0.00 0.00 33.87 3.86
273 274 4.078922 TCTCTCACTAGGTGGATTCTGGAT 60.079 45.833 0.00 0.00 33.87 3.41
274 275 4.219115 TCTCACTAGGTGGATTCTGGATC 58.781 47.826 0.00 0.00 33.87 3.36
275 276 4.078922 TCTCACTAGGTGGATTCTGGATCT 60.079 45.833 0.00 0.00 35.02 2.75
276 277 4.219115 TCACTAGGTGGATTCTGGATCTC 58.781 47.826 0.00 0.00 35.02 2.75
277 278 4.078922 TCACTAGGTGGATTCTGGATCTCT 60.079 45.833 0.00 0.00 35.02 3.10
278 279 4.280677 CACTAGGTGGATTCTGGATCTCTC 59.719 50.000 0.00 0.00 35.02 3.20
279 280 2.688477 AGGTGGATTCTGGATCTCTCC 58.312 52.381 0.00 0.00 42.45 3.71
280 281 1.696884 GGTGGATTCTGGATCTCTCCC 59.303 57.143 0.00 0.00 41.29 4.30
281 282 1.342819 GTGGATTCTGGATCTCTCCCG 59.657 57.143 0.00 0.00 41.29 5.14
282 283 0.320050 GGATTCTGGATCTCTCCCGC 59.680 60.000 0.00 0.00 41.29 6.13
283 284 0.320050 GATTCTGGATCTCTCCCGCC 59.680 60.000 0.00 0.00 41.29 6.13
284 285 1.467678 ATTCTGGATCTCTCCCGCCG 61.468 60.000 0.00 0.00 41.29 6.46
285 286 3.610669 CTGGATCTCTCCCGCCGG 61.611 72.222 0.00 0.00 41.29 6.13
286 287 4.137615 TGGATCTCTCCCGCCGGA 62.138 66.667 5.05 0.00 41.29 5.14
312 313 3.626924 GGCAGTCCCTGTCGGTGT 61.627 66.667 0.00 0.00 33.43 4.16
313 314 2.426023 GCAGTCCCTGTCGGTGTT 59.574 61.111 0.00 0.00 33.43 3.32
314 315 1.668151 GCAGTCCCTGTCGGTGTTC 60.668 63.158 0.00 0.00 33.43 3.18
315 316 1.372997 CAGTCCCTGTCGGTGTTCG 60.373 63.158 0.00 0.00 40.90 3.95
316 317 2.737376 GTCCCTGTCGGTGTTCGC 60.737 66.667 0.00 0.00 39.05 4.70
317 318 3.998672 TCCCTGTCGGTGTTCGCC 61.999 66.667 0.00 0.00 39.05 5.54
325 326 4.754667 GGTGTTCGCCCCCGAGTC 62.755 72.222 0.00 0.00 45.35 3.36
338 339 3.827898 GAGTCGCCTCGGGGTCAG 61.828 72.222 1.62 0.00 34.45 3.51
348 349 4.740822 GGGGTCAGGTGCGCCAAT 62.741 66.667 20.59 0.00 38.62 3.16
349 350 3.134127 GGGTCAGGTGCGCCAATC 61.134 66.667 20.59 6.22 37.19 2.67
350 351 2.359850 GGTCAGGTGCGCCAATCA 60.360 61.111 20.59 0.00 37.19 2.57
351 352 2.690778 GGTCAGGTGCGCCAATCAC 61.691 63.158 20.59 8.64 37.19 3.06
352 353 2.741985 TCAGGTGCGCCAATCACG 60.742 61.111 20.59 0.00 37.19 4.35
353 354 3.803082 CAGGTGCGCCAATCACGG 61.803 66.667 20.59 0.00 37.19 4.94
356 357 3.799755 GTGCGCCAATCACGGGAC 61.800 66.667 4.18 0.00 0.00 4.46
372 373 1.468914 GGGACGAGTCATTTTTCTGGC 59.531 52.381 5.55 0.00 0.00 4.85
373 374 1.128692 GGACGAGTCATTTTTCTGGCG 59.871 52.381 5.55 0.00 0.00 5.69
374 375 2.066262 GACGAGTCATTTTTCTGGCGA 58.934 47.619 0.00 0.00 0.00 5.54
375 376 2.069273 ACGAGTCATTTTTCTGGCGAG 58.931 47.619 0.00 0.00 0.00 5.03
376 377 1.201965 CGAGTCATTTTTCTGGCGAGC 60.202 52.381 0.00 0.00 0.00 5.03
377 378 0.798776 AGTCATTTTTCTGGCGAGCG 59.201 50.000 0.00 0.00 0.00 5.03
378 379 0.796312 GTCATTTTTCTGGCGAGCGA 59.204 50.000 0.00 0.00 0.00 4.93
379 380 1.398390 GTCATTTTTCTGGCGAGCGAT 59.602 47.619 0.00 0.00 0.00 4.58
380 381 1.398041 TCATTTTTCTGGCGAGCGATG 59.602 47.619 0.00 0.00 0.00 3.84
381 382 0.099436 ATTTTTCTGGCGAGCGATGC 59.901 50.000 0.00 0.00 0.00 3.91
393 394 2.126888 CGATGCCGCTGCGTTTTT 60.127 55.556 21.59 2.42 41.78 1.94
394 395 2.427765 CGATGCCGCTGCGTTTTTG 61.428 57.895 21.59 6.08 41.78 2.44
395 396 2.049248 ATGCCGCTGCGTTTTTGG 60.049 55.556 21.59 5.30 41.78 3.28
396 397 4.940593 TGCCGCTGCGTTTTTGGC 62.941 61.111 21.59 15.74 45.91 4.52
400 401 3.099574 GCTGCGTTTTTGGCGAGC 61.100 61.111 0.00 0.00 0.00 5.03
401 402 2.796617 CTGCGTTTTTGGCGAGCG 60.797 61.111 0.00 0.00 0.00 5.03
402 403 4.320928 TGCGTTTTTGGCGAGCGG 62.321 61.111 0.00 0.00 0.00 5.52
403 404 4.020378 GCGTTTTTGGCGAGCGGA 62.020 61.111 0.00 0.00 0.00 5.54
404 405 2.173382 CGTTTTTGGCGAGCGGAG 59.827 61.111 0.00 0.00 0.00 4.63
427 428 3.929660 GGCCAACGAGGTAGAAGTT 57.070 52.632 0.00 0.00 40.61 2.66
429 430 3.323751 GGCCAACGAGGTAGAAGTTAA 57.676 47.619 0.00 0.00 40.61 2.01
430 431 3.870274 GGCCAACGAGGTAGAAGTTAAT 58.130 45.455 0.00 0.00 40.61 1.40
431 432 3.621715 GGCCAACGAGGTAGAAGTTAATG 59.378 47.826 0.00 0.00 40.61 1.90
432 433 3.063588 GCCAACGAGGTAGAAGTTAATGC 59.936 47.826 0.00 0.00 40.61 3.56
433 434 4.250464 CCAACGAGGTAGAAGTTAATGCA 58.750 43.478 0.00 0.00 0.00 3.96
434 435 4.092968 CCAACGAGGTAGAAGTTAATGCAC 59.907 45.833 0.00 0.00 0.00 4.57
435 436 3.508762 ACGAGGTAGAAGTTAATGCACG 58.491 45.455 0.00 0.00 0.00 5.34
436 437 2.858344 CGAGGTAGAAGTTAATGCACGG 59.142 50.000 0.00 0.00 0.00 4.94
437 438 2.608090 GAGGTAGAAGTTAATGCACGGC 59.392 50.000 0.00 0.00 0.00 5.68
438 439 1.326548 GGTAGAAGTTAATGCACGGCG 59.673 52.381 4.80 4.80 0.00 6.46
439 440 1.003851 TAGAAGTTAATGCACGGCGC 58.996 50.000 6.90 0.00 42.89 6.53
440 441 1.226295 GAAGTTAATGCACGGCGCC 60.226 57.895 19.07 19.07 41.33 6.53
441 442 1.644786 GAAGTTAATGCACGGCGCCT 61.645 55.000 26.68 8.92 41.33 5.52
442 443 0.391927 AAGTTAATGCACGGCGCCTA 60.392 50.000 26.68 5.69 41.33 3.93
443 444 0.391927 AGTTAATGCACGGCGCCTAA 60.392 50.000 26.68 12.30 41.33 2.69
444 445 0.027586 GTTAATGCACGGCGCCTAAG 59.972 55.000 26.68 15.01 41.33 2.18
445 446 0.391927 TTAATGCACGGCGCCTAAGT 60.392 50.000 26.68 12.81 41.33 2.24
446 447 1.087202 TAATGCACGGCGCCTAAGTG 61.087 55.000 26.68 24.95 41.33 3.16
447 448 3.605749 ATGCACGGCGCCTAAGTGT 62.606 57.895 26.82 15.13 41.33 3.55
448 449 3.047877 GCACGGCGCCTAAGTGTT 61.048 61.111 26.82 2.06 38.10 3.32
449 450 2.613506 GCACGGCGCCTAAGTGTTT 61.614 57.895 26.82 0.77 38.10 2.83
450 451 1.946267 CACGGCGCCTAAGTGTTTT 59.054 52.632 26.68 0.00 0.00 2.43
451 452 0.385473 CACGGCGCCTAAGTGTTTTG 60.385 55.000 26.68 7.01 0.00 2.44
452 453 0.533308 ACGGCGCCTAAGTGTTTTGA 60.533 50.000 26.68 0.00 0.00 2.69
453 454 0.165944 CGGCGCCTAAGTGTTTTGAG 59.834 55.000 26.68 0.00 0.00 3.02
454 455 1.519408 GGCGCCTAAGTGTTTTGAGA 58.481 50.000 22.15 0.00 0.00 3.27
455 456 2.084546 GGCGCCTAAGTGTTTTGAGAT 58.915 47.619 22.15 0.00 0.00 2.75
456 457 2.488153 GGCGCCTAAGTGTTTTGAGATT 59.512 45.455 22.15 0.00 0.00 2.40
457 458 3.687698 GGCGCCTAAGTGTTTTGAGATTA 59.312 43.478 22.15 0.00 0.00 1.75
458 459 4.335594 GGCGCCTAAGTGTTTTGAGATTAT 59.664 41.667 22.15 0.00 0.00 1.28
459 460 5.163652 GGCGCCTAAGTGTTTTGAGATTATT 60.164 40.000 22.15 0.00 0.00 1.40
460 461 6.322491 GCGCCTAAGTGTTTTGAGATTATTT 58.678 36.000 0.00 0.00 0.00 1.40
461 462 6.251376 GCGCCTAAGTGTTTTGAGATTATTTG 59.749 38.462 0.00 0.00 0.00 2.32
462 463 6.747280 CGCCTAAGTGTTTTGAGATTATTTGG 59.253 38.462 0.00 0.00 0.00 3.28
463 464 7.574967 CGCCTAAGTGTTTTGAGATTATTTGGT 60.575 37.037 0.00 0.00 0.00 3.67
464 465 8.088365 GCCTAAGTGTTTTGAGATTATTTGGTT 58.912 33.333 0.00 0.00 0.00 3.67
465 466 9.981114 CCTAAGTGTTTTGAGATTATTTGGTTT 57.019 29.630 0.00 0.00 0.00 3.27
468 469 8.574196 AGTGTTTTGAGATTATTTGGTTTTCG 57.426 30.769 0.00 0.00 0.00 3.46
469 470 8.194769 AGTGTTTTGAGATTATTTGGTTTTCGT 58.805 29.630 0.00 0.00 0.00 3.85
470 471 9.453325 GTGTTTTGAGATTATTTGGTTTTCGTA 57.547 29.630 0.00 0.00 0.00 3.43
493 494 5.250235 AGATGACTTACACACATAGACGG 57.750 43.478 0.00 0.00 0.00 4.79
494 495 4.948004 AGATGACTTACACACATAGACGGA 59.052 41.667 0.00 0.00 0.00 4.69
495 496 4.696899 TGACTTACACACATAGACGGAG 57.303 45.455 0.00 0.00 0.00 4.63
496 497 3.442625 TGACTTACACACATAGACGGAGG 59.557 47.826 0.00 0.00 0.00 4.30
497 498 2.758979 ACTTACACACATAGACGGAGGG 59.241 50.000 0.00 0.00 0.00 4.30
566 567 3.043418 AGCCGTTTAGATTTAGGGCCTA 58.957 45.455 9.81 9.81 41.41 3.93
568 569 4.001652 GCCGTTTAGATTTAGGGCCTATC 58.998 47.826 15.37 11.26 34.54 2.08
647 935 0.951558 TTTGGAGCGAAGAAACAGGC 59.048 50.000 0.00 0.00 0.00 4.85
655 943 1.200020 CGAAGAAACAGGCATTCCACC 59.800 52.381 0.00 0.00 33.74 4.61
689 977 3.053896 GGAGCCGTTGGTTTCCCG 61.054 66.667 0.00 0.00 0.00 5.14
694 982 1.946267 CCGTTGGTTTCCCGAACAG 59.054 57.895 0.00 0.00 40.13 3.16
702 990 2.355818 GGTTTCCCGAACAGCTCCTTAT 60.356 50.000 0.00 0.00 40.13 1.73
901 4091 4.061357 TGTGTTCACATCTGTAAACCGA 57.939 40.909 1.23 0.00 0.00 4.69
974 4171 7.273598 GGAAGAAAAGTTGTGAGTTTTGAAGTC 59.726 37.037 0.00 0.00 38.26 3.01
975 4172 6.314784 AGAAAAGTTGTGAGTTTTGAAGTCG 58.685 36.000 0.00 0.00 38.26 4.18
976 4173 5.622770 AAAGTTGTGAGTTTTGAAGTCGT 57.377 34.783 0.00 0.00 33.44 4.34
992 4189 2.880890 AGTCGTTGCTGCATTCTTTCTT 59.119 40.909 1.84 0.00 0.00 2.52
1117 4314 3.235750 TCCTCGACATCATCATCTCCT 57.764 47.619 0.00 0.00 0.00 3.69
1161 4358 1.379309 GACAGCCGTCCTCTCCTCT 60.379 63.158 0.00 0.00 36.02 3.69
1253 4450 3.333189 CCGCATCGCCATCGTCTG 61.333 66.667 0.00 0.00 36.96 3.51
1273 4470 3.628646 AAGATCCTGGCCGCACACC 62.629 63.158 0.00 0.00 0.00 4.16
1349 4546 2.494918 CGGGAAGATCGACCGCTT 59.505 61.111 11.71 0.00 41.23 4.68
1527 4730 5.494724 TCCTGTGATTTTCCTGAGATTGAG 58.505 41.667 0.00 0.00 0.00 3.02
1566 4769 1.743252 CCCTCGGCTGAAGCAACTC 60.743 63.158 4.43 0.00 44.36 3.01
1670 4873 1.450312 GGATCCACGGGCTCAACAG 60.450 63.158 6.95 0.00 0.00 3.16
1689 4892 2.058595 CGTCCGGATTGTCTCCCCT 61.059 63.158 7.81 0.00 41.49 4.79
1724 4927 5.924475 ATTGTTGTCTCTGTTTCTTACCG 57.076 39.130 0.00 0.00 0.00 4.02
1767 4973 6.998968 CTTAAGAAGCTTGTCATTGAGGAT 57.001 37.500 2.10 0.00 0.00 3.24
1770 4976 2.502142 AGCTTGTCATTGAGGATGCA 57.498 45.000 0.00 0.00 35.64 3.96
1774 4980 2.583024 TGTCATTGAGGATGCACCAA 57.417 45.000 7.86 2.36 42.04 3.67
1836 5042 0.615331 TCAAGGTCATCTCTGCACCC 59.385 55.000 0.00 0.00 0.00 4.61
1849 5055 4.551729 CACCCAAACTGACGGTGT 57.448 55.556 0.00 0.00 41.80 4.16
1850 5056 2.317230 CACCCAAACTGACGGTGTC 58.683 57.895 0.00 0.00 41.80 3.67
1851 5057 0.179056 CACCCAAACTGACGGTGTCT 60.179 55.000 0.00 0.00 41.80 3.41
1852 5058 0.179056 ACCCAAACTGACGGTGTCTG 60.179 55.000 2.76 2.76 37.49 3.51
1853 5059 0.884704 CCCAAACTGACGGTGTCTGG 60.885 60.000 8.39 3.14 36.14 3.86
1914 5120 4.349048 TCCCTTTGATAGCTCAGTATGCAT 59.651 41.667 3.79 3.79 34.76 3.96
1920 5126 6.594788 TGATAGCTCAGTATGCATGTGATA 57.405 37.500 10.16 3.41 34.76 2.15
1922 5128 7.263496 TGATAGCTCAGTATGCATGTGATATC 58.737 38.462 10.16 15.40 38.79 1.63
1984 5190 3.483808 TGCTCCATTTATGCCGTCATA 57.516 42.857 0.00 0.00 34.22 2.15
1985 5191 4.019792 TGCTCCATTTATGCCGTCATAT 57.980 40.909 0.00 0.00 35.30 1.78
1986 5192 5.159273 TGCTCCATTTATGCCGTCATATA 57.841 39.130 0.00 0.00 35.30 0.86
1987 5193 5.744171 TGCTCCATTTATGCCGTCATATAT 58.256 37.500 0.00 0.00 35.30 0.86
2051 5257 2.426024 CCTTTGCTGCTACTACCGTCTA 59.574 50.000 0.00 0.00 0.00 2.59
2052 5258 3.489398 CCTTTGCTGCTACTACCGTCTAG 60.489 52.174 0.00 0.00 0.00 2.43
2053 5259 2.414994 TGCTGCTACTACCGTCTAGT 57.585 50.000 0.00 0.00 0.00 2.57
2054 5260 2.014857 TGCTGCTACTACCGTCTAGTG 58.985 52.381 0.00 0.00 0.00 2.74
2055 5261 2.015587 GCTGCTACTACCGTCTAGTGT 58.984 52.381 0.00 0.00 0.00 3.55
2056 5262 3.201290 GCTGCTACTACCGTCTAGTGTA 58.799 50.000 0.00 0.00 0.00 2.90
2057 5263 3.002144 GCTGCTACTACCGTCTAGTGTAC 59.998 52.174 0.00 0.00 0.00 2.90
2069 5275 8.915057 ACCGTCTAGTGTACTATGTATGTTAT 57.085 34.615 0.00 0.00 0.00 1.89
2098 5304 1.229428 ACTGAAACGTCATGCACCTG 58.771 50.000 0.00 0.00 31.85 4.00
2135 5341 3.642848 ACCTGAATTGCTGAAATGTGGTT 59.357 39.130 0.00 0.00 0.00 3.67
2143 5349 2.733026 GCTGAAATGTGGTTGATTGTGC 59.267 45.455 0.00 0.00 0.00 4.57
2148 5354 7.459795 TGAAATGTGGTTGATTGTGCTATTA 57.540 32.000 0.00 0.00 0.00 0.98
2158 5364 9.076596 GGTTGATTGTGCTATTACAGAATTTTC 57.923 33.333 0.00 0.00 34.01 2.29
2189 5395 4.944962 TGCTGATGTGCAAACATACTAC 57.055 40.909 0.00 0.00 40.29 2.73
2191 5397 4.392754 TGCTGATGTGCAAACATACTACTG 59.607 41.667 0.00 0.00 40.29 2.74
2192 5398 4.631377 GCTGATGTGCAAACATACTACTGA 59.369 41.667 0.00 0.00 0.00 3.41
2193 5399 5.122239 GCTGATGTGCAAACATACTACTGAA 59.878 40.000 0.00 0.00 0.00 3.02
2194 5400 6.348458 GCTGATGTGCAAACATACTACTGAAA 60.348 38.462 0.00 0.00 0.00 2.69
2196 5402 8.109705 TGATGTGCAAACATACTACTGAAAAT 57.890 30.769 0.00 0.00 0.00 1.82
2197 5403 9.225436 TGATGTGCAAACATACTACTGAAAATA 57.775 29.630 0.00 0.00 0.00 1.40
2224 5430 7.703058 ACACCTTACATAAAGAAATGAAGGG 57.297 36.000 14.16 0.00 37.87 3.95
2226 5432 7.611855 ACACCTTACATAAAGAAATGAAGGGAG 59.388 37.037 14.16 10.63 37.87 4.30
2227 5433 7.611855 CACCTTACATAAAGAAATGAAGGGAGT 59.388 37.037 14.16 0.00 37.87 3.85
2228 5434 7.611855 ACCTTACATAAAGAAATGAAGGGAGTG 59.388 37.037 14.16 0.00 37.87 3.51
2241 5487 7.676683 ATGAAGGGAGTGTTATGTATGTACT 57.323 36.000 0.00 0.00 0.00 2.73
2242 5488 8.777578 ATGAAGGGAGTGTTATGTATGTACTA 57.222 34.615 0.00 0.00 0.00 1.82
2280 5526 3.541632 TGAAGGGAAAATCGATGTAGGC 58.458 45.455 0.00 0.00 0.00 3.93
2321 5568 6.597614 CATCTTACTTTGTCTCTGAAAGTGC 58.402 40.000 0.00 0.00 42.35 4.40
2346 5593 9.999009 GCAGGTAAAAGAGTTATATTGTTTACC 57.001 33.333 12.94 12.94 45.59 2.85
2402 5672 7.633193 TTACCAAGCACTAGAACTTTTCAAA 57.367 32.000 0.00 0.00 0.00 2.69
2432 5702 6.656003 AGTTTATGTTCTAGTTTGCGTTGTC 58.344 36.000 0.00 0.00 0.00 3.18
2457 5727 0.947244 CTGTGTTGGGTGAAGTCTGC 59.053 55.000 0.00 0.00 0.00 4.26
2477 5748 7.831193 AGTCTGCATTATTTGGTCTATGAAAGT 59.169 33.333 0.00 0.00 0.00 2.66
2486 5757 4.009675 TGGTCTATGAAAGTGCATCCAAC 58.990 43.478 0.00 0.00 0.00 3.77
2531 5803 1.423541 TGCTGGGCAAAGTCTAGGAAA 59.576 47.619 0.00 0.00 34.76 3.13
2581 5887 1.217244 CATTTCCCCAGCTTGCTGC 59.783 57.895 16.37 0.00 43.29 5.25
2598 5904 3.062763 GCTGCATATCTTCACAGCGTAT 58.937 45.455 0.00 0.00 45.23 3.06
2694 6000 2.290641 GCTGAAATACAATAGCGGGTGG 59.709 50.000 0.00 0.00 0.00 4.61
2701 6007 1.149174 AATAGCGGGTGGAGGCATG 59.851 57.895 0.00 0.00 0.00 4.06
2729 6035 2.064762 CAAAGGAACTGCTCAGAGACG 58.935 52.381 0.00 0.00 40.86 4.18
2730 6036 1.621992 AAGGAACTGCTCAGAGACGA 58.378 50.000 0.00 0.00 40.86 4.20
2731 6037 1.173043 AGGAACTGCTCAGAGACGAG 58.827 55.000 0.00 0.00 37.18 4.18
2732 6038 0.172352 GGAACTGCTCAGAGACGAGG 59.828 60.000 0.00 0.00 33.36 4.63
2733 6039 0.172352 GAACTGCTCAGAGACGAGGG 59.828 60.000 0.00 0.00 33.36 4.30
2734 6040 0.540830 AACTGCTCAGAGACGAGGGT 60.541 55.000 0.00 0.00 33.36 4.34
2735 6041 1.247419 ACTGCTCAGAGACGAGGGTG 61.247 60.000 0.00 0.00 33.36 4.61
2737 6043 2.888863 CTCAGAGACGAGGGTGCC 59.111 66.667 0.00 0.00 0.00 5.01
2738 6044 1.979155 CTCAGAGACGAGGGTGCCA 60.979 63.158 0.00 0.00 0.00 4.92
2739 6045 2.219325 CTCAGAGACGAGGGTGCCAC 62.219 65.000 0.00 0.00 0.00 5.01
2740 6046 2.997897 AGAGACGAGGGTGCCACC 60.998 66.667 4.93 4.93 37.60 4.61
2741 6047 3.311110 GAGACGAGGGTGCCACCA 61.311 66.667 17.22 0.00 41.02 4.17
2762 6791 2.962569 CGGCTCCAGAACAGTCGA 59.037 61.111 0.00 0.00 41.66 4.20
2764 6793 1.079750 GGCTCCAGAACAGTCGACC 60.080 63.158 13.01 0.00 0.00 4.79
2809 6838 3.119849 CGTGAATGACATGGGAAAGTTCC 60.120 47.826 1.10 1.10 46.82 3.62
2821 6850 2.713531 AAAGTTCCGCACCATGGCCT 62.714 55.000 13.04 0.00 0.00 5.19
2823 6852 1.152963 GTTCCGCACCATGGCCTAT 60.153 57.895 13.04 0.00 0.00 2.57
2831 6860 1.496429 CACCATGGCCTATTCTTCCCT 59.504 52.381 13.04 0.00 0.00 4.20
2832 6861 2.711009 CACCATGGCCTATTCTTCCCTA 59.289 50.000 13.04 0.00 0.00 3.53
2833 6862 3.138283 CACCATGGCCTATTCTTCCCTAA 59.862 47.826 13.04 0.00 0.00 2.69
2834 6863 3.791545 ACCATGGCCTATTCTTCCCTAAA 59.208 43.478 13.04 0.00 0.00 1.85
2835 6864 4.141158 ACCATGGCCTATTCTTCCCTAAAG 60.141 45.833 13.04 0.00 36.22 1.85
2836 6865 4.401925 CATGGCCTATTCTTCCCTAAAGG 58.598 47.826 3.32 0.00 35.54 3.11
2837 6866 3.470868 TGGCCTATTCTTCCCTAAAGGT 58.529 45.455 3.32 0.00 35.54 3.50
2838 6867 3.856206 TGGCCTATTCTTCCCTAAAGGTT 59.144 43.478 3.32 0.00 35.54 3.50
2839 6868 4.293901 TGGCCTATTCTTCCCTAAAGGTTT 59.706 41.667 3.32 0.00 35.54 3.27
2840 6869 4.888239 GGCCTATTCTTCCCTAAAGGTTTC 59.112 45.833 0.00 0.00 35.54 2.78
2841 6870 5.340110 GGCCTATTCTTCCCTAAAGGTTTCT 60.340 44.000 0.00 0.00 35.54 2.52
2842 6871 5.590663 GCCTATTCTTCCCTAAAGGTTTCTG 59.409 44.000 0.00 0.00 35.54 3.02
2843 6872 6.722328 CCTATTCTTCCCTAAAGGTTTCTGT 58.278 40.000 0.00 0.00 35.54 3.41
2844 6873 6.599638 CCTATTCTTCCCTAAAGGTTTCTGTG 59.400 42.308 0.00 0.00 35.54 3.66
2845 6874 5.640158 TTCTTCCCTAAAGGTTTCTGTGA 57.360 39.130 0.00 0.00 35.54 3.58
2846 6875 5.843019 TCTTCCCTAAAGGTTTCTGTGAT 57.157 39.130 0.00 0.00 35.54 3.06
2847 6876 6.200878 TCTTCCCTAAAGGTTTCTGTGATT 57.799 37.500 0.00 0.00 35.54 2.57
2848 6877 6.238648 TCTTCCCTAAAGGTTTCTGTGATTC 58.761 40.000 0.00 0.00 35.54 2.52
2849 6878 5.843019 TCCCTAAAGGTTTCTGTGATTCT 57.157 39.130 0.00 0.00 36.75 2.40
2850 6879 5.560724 TCCCTAAAGGTTTCTGTGATTCTG 58.439 41.667 0.00 0.00 36.75 3.02
2851 6880 5.073144 TCCCTAAAGGTTTCTGTGATTCTGT 59.927 40.000 0.00 0.00 36.75 3.41
2852 6881 5.770162 CCCTAAAGGTTTCTGTGATTCTGTT 59.230 40.000 0.00 0.00 0.00 3.16
2853 6882 6.940298 CCCTAAAGGTTTCTGTGATTCTGTTA 59.060 38.462 0.00 0.00 0.00 2.41
2854 6883 7.611855 CCCTAAAGGTTTCTGTGATTCTGTTAT 59.388 37.037 0.00 0.00 0.00 1.89
2855 6884 9.014297 CCTAAAGGTTTCTGTGATTCTGTTATT 57.986 33.333 0.00 0.00 0.00 1.40
2856 6885 9.831737 CTAAAGGTTTCTGTGATTCTGTTATTG 57.168 33.333 0.00 0.00 0.00 1.90
2857 6886 7.823745 AAGGTTTCTGTGATTCTGTTATTGT 57.176 32.000 0.00 0.00 0.00 2.71
2858 6887 7.206981 AGGTTTCTGTGATTCTGTTATTGTG 57.793 36.000 0.00 0.00 0.00 3.33
2859 6888 6.772716 AGGTTTCTGTGATTCTGTTATTGTGT 59.227 34.615 0.00 0.00 0.00 3.72
2860 6889 7.285401 AGGTTTCTGTGATTCTGTTATTGTGTT 59.715 33.333 0.00 0.00 0.00 3.32
2861 6890 8.564574 GGTTTCTGTGATTCTGTTATTGTGTTA 58.435 33.333 0.00 0.00 0.00 2.41
2862 6891 9.944663 GTTTCTGTGATTCTGTTATTGTGTTAA 57.055 29.630 0.00 0.00 0.00 2.01
2866 6895 9.265938 CTGTGATTCTGTTATTGTGTTAATTCG 57.734 33.333 0.00 0.00 0.00 3.34
2867 6896 8.779303 TGTGATTCTGTTATTGTGTTAATTCGT 58.221 29.630 0.00 0.00 0.00 3.85
2875 6904 9.171701 TGTTATTGTGTTAATTCGTAAAGTTGC 57.828 29.630 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.639334 GTGTGCATATGGTCAGAGATCAT 58.361 43.478 4.56 0.00 37.20 2.45
1 2 3.491447 CGTGTGCATATGGTCAGAGATCA 60.491 47.826 4.56 0.00 0.00 2.92
2 3 3.055591 CGTGTGCATATGGTCAGAGATC 58.944 50.000 4.56 0.00 0.00 2.75
3 4 2.432146 ACGTGTGCATATGGTCAGAGAT 59.568 45.455 7.63 0.00 0.00 2.75
4 5 1.824852 ACGTGTGCATATGGTCAGAGA 59.175 47.619 7.63 0.00 0.00 3.10
5 6 2.299993 ACGTGTGCATATGGTCAGAG 57.700 50.000 7.63 0.00 0.00 3.35
6 7 2.616960 GAACGTGTGCATATGGTCAGA 58.383 47.619 15.16 0.00 0.00 3.27
7 8 1.665679 GGAACGTGTGCATATGGTCAG 59.334 52.381 20.64 0.00 0.00 3.51
8 9 1.002544 TGGAACGTGTGCATATGGTCA 59.997 47.619 20.64 6.00 0.00 4.02
9 10 1.732941 TGGAACGTGTGCATATGGTC 58.267 50.000 12.00 12.00 0.00 4.02
10 11 2.192664 TTGGAACGTGTGCATATGGT 57.807 45.000 7.63 0.00 0.00 3.55
11 12 3.489059 GGATTTGGAACGTGTGCATATGG 60.489 47.826 7.63 0.00 0.00 2.74
12 13 3.489059 GGGATTTGGAACGTGTGCATATG 60.489 47.826 0.46 0.46 0.00 1.78
13 14 2.687935 GGGATTTGGAACGTGTGCATAT 59.312 45.455 0.00 0.00 0.00 1.78
14 15 2.088423 GGGATTTGGAACGTGTGCATA 58.912 47.619 0.00 0.00 0.00 3.14
15 16 0.887933 GGGATTTGGAACGTGTGCAT 59.112 50.000 0.00 0.00 0.00 3.96
16 17 0.179004 AGGGATTTGGAACGTGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
17 18 0.521735 GAGGGATTTGGAACGTGTGC 59.478 55.000 0.00 0.00 0.00 4.57
18 19 1.165270 GGAGGGATTTGGAACGTGTG 58.835 55.000 0.00 0.00 0.00 3.82
19 20 1.003233 GAGGAGGGATTTGGAACGTGT 59.997 52.381 0.00 0.00 0.00 4.49
20 21 1.003118 TGAGGAGGGATTTGGAACGTG 59.997 52.381 0.00 0.00 0.00 4.49
21 22 1.358152 TGAGGAGGGATTTGGAACGT 58.642 50.000 0.00 0.00 0.00 3.99
22 23 2.171448 AGATGAGGAGGGATTTGGAACG 59.829 50.000 0.00 0.00 0.00 3.95
23 24 3.549794 CAGATGAGGAGGGATTTGGAAC 58.450 50.000 0.00 0.00 0.00 3.62
24 25 2.092212 GCAGATGAGGAGGGATTTGGAA 60.092 50.000 0.00 0.00 0.00 3.53
25 26 1.492176 GCAGATGAGGAGGGATTTGGA 59.508 52.381 0.00 0.00 0.00 3.53
26 27 1.213678 TGCAGATGAGGAGGGATTTGG 59.786 52.381 0.00 0.00 0.00 3.28
27 28 2.723322 TGCAGATGAGGAGGGATTTG 57.277 50.000 0.00 0.00 0.00 2.32
28 29 2.781757 TGATGCAGATGAGGAGGGATTT 59.218 45.455 0.00 0.00 0.00 2.17
29 30 2.415624 TGATGCAGATGAGGAGGGATT 58.584 47.619 0.00 0.00 0.00 3.01
30 31 2.113807 TGATGCAGATGAGGAGGGAT 57.886 50.000 0.00 0.00 0.00 3.85
31 32 1.883678 TTGATGCAGATGAGGAGGGA 58.116 50.000 0.00 0.00 0.00 4.20
32 33 2.953284 ATTGATGCAGATGAGGAGGG 57.047 50.000 0.00 0.00 0.00 4.30
33 34 4.276183 CAGAAATTGATGCAGATGAGGAGG 59.724 45.833 0.00 0.00 0.00 4.30
34 35 5.007823 GTCAGAAATTGATGCAGATGAGGAG 59.992 44.000 0.00 0.00 38.29 3.69
35 36 4.880120 GTCAGAAATTGATGCAGATGAGGA 59.120 41.667 0.00 0.00 38.29 3.71
36 37 4.036498 GGTCAGAAATTGATGCAGATGAGG 59.964 45.833 0.00 0.00 38.29 3.86
37 38 4.260661 CGGTCAGAAATTGATGCAGATGAG 60.261 45.833 0.00 0.00 38.29 2.90
38 39 3.624410 CGGTCAGAAATTGATGCAGATGA 59.376 43.478 0.00 0.00 38.29 2.92
39 40 3.624410 TCGGTCAGAAATTGATGCAGATG 59.376 43.478 0.00 0.00 38.29 2.90
40 41 3.877559 TCGGTCAGAAATTGATGCAGAT 58.122 40.909 0.00 0.00 38.29 2.90
41 42 3.333029 TCGGTCAGAAATTGATGCAGA 57.667 42.857 0.00 0.00 38.29 4.26
42 43 4.627611 AATCGGTCAGAAATTGATGCAG 57.372 40.909 0.00 0.00 38.29 4.41
43 44 5.389859 AAAATCGGTCAGAAATTGATGCA 57.610 34.783 0.00 0.00 38.29 3.96
70 71 2.670148 GGGCGATTGACCAGGGACT 61.670 63.158 0.00 0.00 45.78 3.85
71 72 2.124695 GGGCGATTGACCAGGGAC 60.125 66.667 0.00 0.00 45.78 4.46
77 78 0.179084 TTCAGATCGGGCGATTGACC 60.179 55.000 0.00 0.00 41.42 4.02
78 79 1.327764 GTTTCAGATCGGGCGATTGAC 59.672 52.381 0.00 0.00 34.60 3.18
79 80 1.651987 GTTTCAGATCGGGCGATTGA 58.348 50.000 0.00 0.00 34.60 2.57
80 81 0.657840 GGTTTCAGATCGGGCGATTG 59.342 55.000 0.00 0.00 34.60 2.67
81 82 0.541863 AGGTTTCAGATCGGGCGATT 59.458 50.000 0.00 0.00 34.60 3.34
82 83 0.541863 AAGGTTTCAGATCGGGCGAT 59.458 50.000 0.00 0.00 37.59 4.58
83 84 0.108329 GAAGGTTTCAGATCGGGCGA 60.108 55.000 0.00 0.00 0.00 5.54
84 85 1.090052 GGAAGGTTTCAGATCGGGCG 61.090 60.000 0.00 0.00 0.00 6.13
85 86 0.253327 AGGAAGGTTTCAGATCGGGC 59.747 55.000 0.00 0.00 0.00 6.13
86 87 2.014068 GCAGGAAGGTTTCAGATCGGG 61.014 57.143 0.00 0.00 0.00 5.14
87 88 1.339055 TGCAGGAAGGTTTCAGATCGG 60.339 52.381 0.00 0.00 0.00 4.18
88 89 2.005451 CTGCAGGAAGGTTTCAGATCG 58.995 52.381 5.57 0.00 0.00 3.69
89 90 3.006247 GACTGCAGGAAGGTTTCAGATC 58.994 50.000 19.93 0.00 0.00 2.75
90 91 2.641815 AGACTGCAGGAAGGTTTCAGAT 59.358 45.455 19.93 0.00 0.00 2.90
91 92 2.050144 AGACTGCAGGAAGGTTTCAGA 58.950 47.619 19.93 0.00 0.00 3.27
92 93 2.557920 AGACTGCAGGAAGGTTTCAG 57.442 50.000 19.93 0.00 0.00 3.02
93 94 2.487265 GGAAGACTGCAGGAAGGTTTCA 60.487 50.000 19.93 0.00 0.00 2.69
94 95 2.155279 GGAAGACTGCAGGAAGGTTTC 58.845 52.381 19.93 11.22 0.00 2.78
95 96 1.494721 TGGAAGACTGCAGGAAGGTTT 59.505 47.619 19.93 2.61 0.00 3.27
96 97 1.072965 CTGGAAGACTGCAGGAAGGTT 59.927 52.381 19.93 3.31 37.36 3.50
97 98 0.689623 CTGGAAGACTGCAGGAAGGT 59.310 55.000 19.93 0.00 37.36 3.50
98 99 0.979665 TCTGGAAGACTGCAGGAAGG 59.020 55.000 19.93 1.52 38.67 3.46
109 110 6.899155 CCGCAGTGGAAAGAATCTGGAAGA 62.899 50.000 0.00 0.00 45.90 2.87
110 111 2.417933 CGCAGTGGAAAGAATCTGGAAG 59.582 50.000 0.00 0.00 0.00 3.46
111 112 2.426522 CGCAGTGGAAAGAATCTGGAA 58.573 47.619 0.00 0.00 0.00 3.53
112 113 1.339055 CCGCAGTGGAAAGAATCTGGA 60.339 52.381 0.00 0.00 42.00 3.86
113 114 1.089920 CCGCAGTGGAAAGAATCTGG 58.910 55.000 0.00 0.00 42.00 3.86
114 115 2.099141 TCCGCAGTGGAAAGAATCTG 57.901 50.000 0.00 0.00 46.38 2.90
124 125 0.392193 AAGAGCAAGATCCGCAGTGG 60.392 55.000 7.42 0.00 40.09 4.00
125 126 1.129998 CAAAGAGCAAGATCCGCAGTG 59.870 52.381 7.42 0.00 0.00 3.66
126 127 1.446907 CAAAGAGCAAGATCCGCAGT 58.553 50.000 7.42 0.00 0.00 4.40
127 128 0.098376 GCAAAGAGCAAGATCCGCAG 59.902 55.000 7.42 0.00 44.79 5.18
128 129 2.174334 GCAAAGAGCAAGATCCGCA 58.826 52.632 7.42 0.00 44.79 5.69
138 139 1.135460 GTCTGCAGATTGGCAAAGAGC 60.135 52.381 21.47 9.06 44.40 4.09
139 140 1.471684 GGTCTGCAGATTGGCAAAGAG 59.528 52.381 21.47 0.00 44.40 2.85
140 141 1.538047 GGTCTGCAGATTGGCAAAGA 58.462 50.000 21.47 0.00 44.40 2.52
141 142 0.169672 CGGTCTGCAGATTGGCAAAG 59.830 55.000 21.47 0.00 44.40 2.77
142 143 1.865788 GCGGTCTGCAGATTGGCAAA 61.866 55.000 21.47 0.00 44.40 3.68
143 144 2.334946 GCGGTCTGCAGATTGGCAA 61.335 57.895 21.47 0.68 44.40 4.52
144 145 2.747460 GCGGTCTGCAGATTGGCA 60.747 61.111 21.47 0.00 45.45 4.92
153 154 1.520342 GATGAGGACTGCGGTCTGC 60.520 63.158 24.48 16.59 46.70 4.26
154 155 1.142748 GGATGAGGACTGCGGTCTG 59.857 63.158 24.48 0.00 41.82 3.51
155 156 1.000993 AGGATGAGGACTGCGGTCT 59.999 57.895 24.48 11.13 41.82 3.85
156 157 1.142748 CAGGATGAGGACTGCGGTC 59.857 63.158 17.83 17.83 39.69 4.79
157 158 1.305297 TCAGGATGAGGACTGCGGT 60.305 57.895 0.00 0.00 42.56 5.68
158 159 3.621225 TCAGGATGAGGACTGCGG 58.379 61.111 0.00 0.00 42.56 5.69
168 169 1.793258 GCGACTCATGGATCAGGATG 58.207 55.000 0.00 0.00 37.54 3.51
169 170 0.316522 CGCGACTCATGGATCAGGAT 59.683 55.000 0.00 0.00 0.00 3.24
170 171 1.735973 CGCGACTCATGGATCAGGA 59.264 57.895 0.00 0.00 0.00 3.86
171 172 1.300465 CCGCGACTCATGGATCAGG 60.300 63.158 8.23 0.00 0.00 3.86
172 173 0.318529 CTCCGCGACTCATGGATCAG 60.319 60.000 8.23 0.00 0.00 2.90
173 174 1.037579 ACTCCGCGACTCATGGATCA 61.038 55.000 8.23 0.00 0.00 2.92
174 175 0.318275 GACTCCGCGACTCATGGATC 60.318 60.000 8.23 0.00 0.00 3.36
175 176 1.736586 GACTCCGCGACTCATGGAT 59.263 57.895 8.23 0.00 0.00 3.41
176 177 2.415608 GGACTCCGCGACTCATGGA 61.416 63.158 8.23 0.00 0.00 3.41
177 178 2.105128 GGACTCCGCGACTCATGG 59.895 66.667 8.23 0.00 0.00 3.66
178 179 2.105128 GGGACTCCGCGACTCATG 59.895 66.667 8.23 0.00 0.00 3.07
179 180 2.362503 TGGGACTCCGCGACTCAT 60.363 61.111 8.23 0.00 35.24 2.90
180 181 3.062466 CTGGGACTCCGCGACTCA 61.062 66.667 8.23 0.92 35.24 3.41
181 182 3.827898 CCTGGGACTCCGCGACTC 61.828 72.222 8.23 0.00 35.24 3.36
194 195 0.621571 TGAAGATGGAGACCCCCTGG 60.622 60.000 0.00 0.00 37.80 4.45
195 196 1.419387 GATGAAGATGGAGACCCCCTG 59.581 57.143 0.00 0.00 0.00 4.45
196 197 1.813102 GATGAAGATGGAGACCCCCT 58.187 55.000 0.00 0.00 0.00 4.79
197 198 0.394565 CGATGAAGATGGAGACCCCC 59.605 60.000 0.00 0.00 0.00 5.40
198 199 0.394565 CCGATGAAGATGGAGACCCC 59.605 60.000 0.00 0.00 0.00 4.95
199 200 0.250081 GCCGATGAAGATGGAGACCC 60.250 60.000 0.00 0.00 0.00 4.46
200 201 0.598680 CGCCGATGAAGATGGAGACC 60.599 60.000 0.00 0.00 0.00 3.85
201 202 0.598680 CCGCCGATGAAGATGGAGAC 60.599 60.000 0.00 0.00 0.00 3.36
202 203 1.742146 CCGCCGATGAAGATGGAGA 59.258 57.895 0.00 0.00 0.00 3.71
203 204 1.958205 GCCGCCGATGAAGATGGAG 60.958 63.158 0.00 0.00 0.00 3.86
204 205 2.108976 GCCGCCGATGAAGATGGA 59.891 61.111 0.00 0.00 0.00 3.41
205 206 2.974698 GGCCGCCGATGAAGATGG 60.975 66.667 0.00 0.00 0.00 3.51
206 207 2.974698 GGGCCGCCGATGAAGATG 60.975 66.667 2.55 0.00 0.00 2.90
207 208 4.609018 CGGGCCGCCGATGAAGAT 62.609 66.667 15.42 0.00 34.88 2.40
225 226 4.787280 AGAGGGACCTGAGGGCCG 62.787 72.222 19.19 0.00 35.63 6.13
226 227 2.766229 GAGAGGGACCTGAGGGCC 60.766 72.222 17.41 17.41 35.63 5.80
227 228 2.569218 TACGAGAGGGACCTGAGGGC 62.569 65.000 2.38 0.00 35.63 5.19
228 229 0.752376 GTACGAGAGGGACCTGAGGG 60.752 65.000 2.38 0.00 38.88 4.30
229 230 0.256464 AGTACGAGAGGGACCTGAGG 59.744 60.000 0.00 0.00 0.00 3.86
230 231 1.210967 AGAGTACGAGAGGGACCTGAG 59.789 57.143 0.00 0.00 0.00 3.35
231 232 1.209990 GAGAGTACGAGAGGGACCTGA 59.790 57.143 0.00 0.00 0.00 3.86
232 233 1.210967 AGAGAGTACGAGAGGGACCTG 59.789 57.143 0.00 0.00 0.00 4.00
233 234 1.487558 GAGAGAGTACGAGAGGGACCT 59.512 57.143 0.00 0.00 0.00 3.85
234 235 1.487558 AGAGAGAGTACGAGAGGGACC 59.512 57.143 0.00 0.00 0.00 4.46
235 236 2.168936 TGAGAGAGAGTACGAGAGGGAC 59.831 54.545 0.00 0.00 0.00 4.46
236 237 2.168936 GTGAGAGAGAGTACGAGAGGGA 59.831 54.545 0.00 0.00 0.00 4.20
237 238 2.169769 AGTGAGAGAGAGTACGAGAGGG 59.830 54.545 0.00 0.00 0.00 4.30
238 239 3.536956 AGTGAGAGAGAGTACGAGAGG 57.463 52.381 0.00 0.00 0.00 3.69
239 240 4.098960 ACCTAGTGAGAGAGAGTACGAGAG 59.901 50.000 0.00 0.00 0.00 3.20
240 241 4.025360 ACCTAGTGAGAGAGAGTACGAGA 58.975 47.826 0.00 0.00 0.00 4.04
241 242 4.116961 CACCTAGTGAGAGAGAGTACGAG 58.883 52.174 0.00 0.00 35.23 4.18
242 243 3.118702 CCACCTAGTGAGAGAGAGTACGA 60.119 52.174 0.00 0.00 35.23 3.43
243 244 3.118702 TCCACCTAGTGAGAGAGAGTACG 60.119 52.174 0.00 0.00 35.23 3.67
244 245 4.490899 TCCACCTAGTGAGAGAGAGTAC 57.509 50.000 0.00 0.00 35.23 2.73
245 246 5.430417 AGAATCCACCTAGTGAGAGAGAGTA 59.570 44.000 0.00 0.00 35.23 2.59
246 247 4.229582 AGAATCCACCTAGTGAGAGAGAGT 59.770 45.833 0.00 0.00 35.23 3.24
247 248 4.580167 CAGAATCCACCTAGTGAGAGAGAG 59.420 50.000 0.00 0.00 35.23 3.20
248 249 4.531854 CAGAATCCACCTAGTGAGAGAGA 58.468 47.826 0.00 0.00 35.23 3.10
249 250 3.636300 CCAGAATCCACCTAGTGAGAGAG 59.364 52.174 0.00 0.00 35.23 3.20
250 251 3.269643 TCCAGAATCCACCTAGTGAGAGA 59.730 47.826 0.00 0.00 35.23 3.10
251 252 3.636679 TCCAGAATCCACCTAGTGAGAG 58.363 50.000 0.00 0.00 35.23 3.20
252 253 3.757947 TCCAGAATCCACCTAGTGAGA 57.242 47.619 0.00 0.00 35.23 3.27
253 254 4.222336 AGATCCAGAATCCACCTAGTGAG 58.778 47.826 0.00 0.00 34.67 3.51
254 255 4.078922 AGAGATCCAGAATCCACCTAGTGA 60.079 45.833 0.00 0.00 34.67 3.41
255 256 4.222336 AGAGATCCAGAATCCACCTAGTG 58.778 47.826 0.00 0.00 34.67 2.74
256 257 4.479158 GAGAGATCCAGAATCCACCTAGT 58.521 47.826 0.00 0.00 34.67 2.57
257 258 3.831911 GGAGAGATCCAGAATCCACCTAG 59.168 52.174 0.00 0.00 34.67 3.02
258 259 3.438668 GGGAGAGATCCAGAATCCACCTA 60.439 52.174 0.00 0.00 34.67 3.08
259 260 2.688477 GGAGAGATCCAGAATCCACCT 58.312 52.381 0.00 0.00 34.67 4.00
260 261 1.696884 GGGAGAGATCCAGAATCCACC 59.303 57.143 0.00 0.00 34.67 4.61
261 262 1.342819 CGGGAGAGATCCAGAATCCAC 59.657 57.143 0.00 0.00 34.67 4.02
262 263 1.709578 CGGGAGAGATCCAGAATCCA 58.290 55.000 0.00 0.00 34.67 3.41
263 264 0.320050 GCGGGAGAGATCCAGAATCC 59.680 60.000 0.00 0.00 34.67 3.01
264 265 0.320050 GGCGGGAGAGATCCAGAATC 59.680 60.000 0.00 0.00 34.30 2.52
265 266 1.467678 CGGCGGGAGAGATCCAGAAT 61.468 60.000 0.00 0.00 0.00 2.40
266 267 2.127869 CGGCGGGAGAGATCCAGAA 61.128 63.158 0.00 0.00 0.00 3.02
267 268 2.519541 CGGCGGGAGAGATCCAGA 60.520 66.667 0.00 0.00 0.00 3.86
268 269 3.610669 CCGGCGGGAGAGATCCAG 61.611 72.222 20.56 0.00 34.06 3.86
269 270 4.137615 TCCGGCGGGAGAGATCCA 62.138 66.667 27.98 0.00 37.43 3.41
298 299 3.048602 CGAACACCGACAGGGACT 58.951 61.111 0.00 0.00 43.47 3.85
299 300 2.737376 GCGAACACCGACAGGGAC 60.737 66.667 0.00 0.00 43.47 4.46
308 309 4.754667 GACTCGGGGGCGAACACC 62.755 72.222 0.00 0.00 0.00 4.16
331 332 4.740822 ATTGGCGCACCTGACCCC 62.741 66.667 10.83 0.00 36.63 4.95
332 333 3.134127 GATTGGCGCACCTGACCC 61.134 66.667 10.83 0.00 36.63 4.46
333 334 2.359850 TGATTGGCGCACCTGACC 60.360 61.111 10.83 0.00 36.63 4.02
334 335 2.870372 GTGATTGGCGCACCTGAC 59.130 61.111 10.83 0.00 36.63 3.51
335 336 2.741985 CGTGATTGGCGCACCTGA 60.742 61.111 10.83 0.00 36.63 3.86
336 337 3.803082 CCGTGATTGGCGCACCTG 61.803 66.667 10.83 0.00 36.63 4.00
339 340 3.799755 GTCCCGTGATTGGCGCAC 61.800 66.667 10.83 0.00 0.00 5.34
342 343 2.885644 CTCGTCCCGTGATTGGCG 60.886 66.667 0.00 0.00 0.00 5.69
343 344 1.810030 GACTCGTCCCGTGATTGGC 60.810 63.158 0.00 0.00 0.00 4.52
344 345 0.175760 ATGACTCGTCCCGTGATTGG 59.824 55.000 0.00 0.00 0.00 3.16
345 346 2.010145 AATGACTCGTCCCGTGATTG 57.990 50.000 0.00 0.00 0.00 2.67
346 347 2.762535 AAATGACTCGTCCCGTGATT 57.237 45.000 0.00 0.00 0.00 2.57
347 348 2.762535 AAAATGACTCGTCCCGTGAT 57.237 45.000 0.00 0.00 0.00 3.06
348 349 2.036733 AGAAAAATGACTCGTCCCGTGA 59.963 45.455 0.00 0.00 0.00 4.35
349 350 2.157668 CAGAAAAATGACTCGTCCCGTG 59.842 50.000 0.00 0.00 0.00 4.94
350 351 2.413837 CAGAAAAATGACTCGTCCCGT 58.586 47.619 0.00 0.00 0.00 5.28
351 352 1.732259 CCAGAAAAATGACTCGTCCCG 59.268 52.381 0.00 0.00 0.00 5.14
352 353 1.468914 GCCAGAAAAATGACTCGTCCC 59.531 52.381 0.00 0.00 0.00 4.46
353 354 1.128692 CGCCAGAAAAATGACTCGTCC 59.871 52.381 0.00 0.00 0.00 4.79
354 355 2.066262 TCGCCAGAAAAATGACTCGTC 58.934 47.619 0.00 0.00 0.00 4.20
355 356 2.069273 CTCGCCAGAAAAATGACTCGT 58.931 47.619 0.00 0.00 0.00 4.18
356 357 1.201965 GCTCGCCAGAAAAATGACTCG 60.202 52.381 0.00 0.00 0.00 4.18
357 358 1.201965 CGCTCGCCAGAAAAATGACTC 60.202 52.381 0.00 0.00 0.00 3.36
358 359 0.798776 CGCTCGCCAGAAAAATGACT 59.201 50.000 0.00 0.00 0.00 3.41
359 360 0.796312 TCGCTCGCCAGAAAAATGAC 59.204 50.000 0.00 0.00 0.00 3.06
360 361 1.398041 CATCGCTCGCCAGAAAAATGA 59.602 47.619 0.00 0.00 0.00 2.57
361 362 1.818850 CATCGCTCGCCAGAAAAATG 58.181 50.000 0.00 0.00 0.00 2.32
362 363 0.099436 GCATCGCTCGCCAGAAAAAT 59.901 50.000 0.00 0.00 0.00 1.82
363 364 1.501741 GCATCGCTCGCCAGAAAAA 59.498 52.632 0.00 0.00 0.00 1.94
364 365 3.177600 GCATCGCTCGCCAGAAAA 58.822 55.556 0.00 0.00 0.00 2.29
376 377 2.126888 AAAAACGCAGCGGCATCG 60.127 55.556 21.15 7.57 41.24 3.84
377 378 2.088178 CCAAAAACGCAGCGGCATC 61.088 57.895 21.15 0.00 41.24 3.91
378 379 2.049248 CCAAAAACGCAGCGGCAT 60.049 55.556 21.15 1.44 41.24 4.40
379 380 4.940593 GCCAAAAACGCAGCGGCA 62.941 61.111 21.15 0.00 42.50 5.69
383 384 3.099574 GCTCGCCAAAAACGCAGC 61.100 61.111 0.00 0.00 0.00 5.25
384 385 2.796617 CGCTCGCCAAAAACGCAG 60.797 61.111 0.00 0.00 0.00 5.18
385 386 4.320928 CCGCTCGCCAAAAACGCA 62.321 61.111 0.00 0.00 0.00 5.24
386 387 3.928618 CTCCGCTCGCCAAAAACGC 62.929 63.158 0.00 0.00 0.00 4.84
387 388 2.173382 CTCCGCTCGCCAAAAACG 59.827 61.111 0.00 0.00 0.00 3.60
388 389 2.126850 GCTCCGCTCGCCAAAAAC 60.127 61.111 0.00 0.00 0.00 2.43
389 390 2.593148 TGCTCCGCTCGCCAAAAA 60.593 55.556 0.00 0.00 0.00 1.94
390 391 3.353836 GTGCTCCGCTCGCCAAAA 61.354 61.111 0.00 0.00 0.00 2.44
404 405 4.382320 TACCTCGTTGGCCGGTGC 62.382 66.667 9.34 0.00 40.22 5.01
405 406 2.125673 CTACCTCGTTGGCCGGTG 60.126 66.667 9.34 0.00 40.22 4.94
406 407 1.885163 CTTCTACCTCGTTGGCCGGT 61.885 60.000 1.90 4.57 40.22 5.28
407 408 1.153628 CTTCTACCTCGTTGGCCGG 60.154 63.158 0.00 0.00 40.22 6.13
408 409 0.037605 AACTTCTACCTCGTTGGCCG 60.038 55.000 0.00 0.00 40.22 6.13
409 410 3.323751 TTAACTTCTACCTCGTTGGCC 57.676 47.619 0.00 0.00 40.22 5.36
410 411 3.063588 GCATTAACTTCTACCTCGTTGGC 59.936 47.826 0.00 0.00 40.22 4.52
411 412 4.092968 GTGCATTAACTTCTACCTCGTTGG 59.907 45.833 0.00 0.00 42.93 3.77
412 413 4.201589 CGTGCATTAACTTCTACCTCGTTG 60.202 45.833 0.00 0.00 0.00 4.10
413 414 3.924686 CGTGCATTAACTTCTACCTCGTT 59.075 43.478 0.00 0.00 0.00 3.85
414 415 3.508762 CGTGCATTAACTTCTACCTCGT 58.491 45.455 0.00 0.00 0.00 4.18
415 416 2.858344 CCGTGCATTAACTTCTACCTCG 59.142 50.000 0.00 0.00 0.00 4.63
416 417 2.608090 GCCGTGCATTAACTTCTACCTC 59.392 50.000 0.00 0.00 0.00 3.85
417 418 2.629051 GCCGTGCATTAACTTCTACCT 58.371 47.619 0.00 0.00 0.00 3.08
418 419 1.326548 CGCCGTGCATTAACTTCTACC 59.673 52.381 0.00 0.00 0.00 3.18
419 420 1.267383 GCGCCGTGCATTAACTTCTAC 60.267 52.381 0.00 0.00 45.45 2.59
420 421 1.003851 GCGCCGTGCATTAACTTCTA 58.996 50.000 0.00 0.00 45.45 2.10
421 422 1.794222 GCGCCGTGCATTAACTTCT 59.206 52.632 0.00 0.00 45.45 2.85
422 423 4.360101 GCGCCGTGCATTAACTTC 57.640 55.556 0.00 0.00 45.45 3.01
431 432 2.125202 AAAACACTTAGGCGCCGTGC 62.125 55.000 26.63 3.06 45.38 5.34
432 433 0.385473 CAAAACACTTAGGCGCCGTG 60.385 55.000 25.53 25.53 34.92 4.94
433 434 0.533308 TCAAAACACTTAGGCGCCGT 60.533 50.000 23.20 10.70 0.00 5.68
434 435 0.165944 CTCAAAACACTTAGGCGCCG 59.834 55.000 23.20 9.91 0.00 6.46
435 436 1.519408 TCTCAAAACACTTAGGCGCC 58.481 50.000 21.89 21.89 0.00 6.53
436 437 3.831715 AATCTCAAAACACTTAGGCGC 57.168 42.857 0.00 0.00 0.00 6.53
437 438 6.747280 CCAAATAATCTCAAAACACTTAGGCG 59.253 38.462 0.00 0.00 0.00 5.52
438 439 7.602753 ACCAAATAATCTCAAAACACTTAGGC 58.397 34.615 0.00 0.00 0.00 3.93
439 440 9.981114 AAACCAAATAATCTCAAAACACTTAGG 57.019 29.630 0.00 0.00 0.00 2.69
442 443 9.030301 CGAAAACCAAATAATCTCAAAACACTT 57.970 29.630 0.00 0.00 0.00 3.16
443 444 8.194769 ACGAAAACCAAATAATCTCAAAACACT 58.805 29.630 0.00 0.00 0.00 3.55
444 445 8.347729 ACGAAAACCAAATAATCTCAAAACAC 57.652 30.769 0.00 0.00 0.00 3.32
450 451 9.443323 TCATCTTACGAAAACCAAATAATCTCA 57.557 29.630 0.00 0.00 0.00 3.27
451 452 9.704098 GTCATCTTACGAAAACCAAATAATCTC 57.296 33.333 0.00 0.00 0.00 2.75
452 453 9.449719 AGTCATCTTACGAAAACCAAATAATCT 57.550 29.630 0.00 0.00 0.00 2.40
469 470 6.600427 TCCGTCTATGTGTGTAAGTCATCTTA 59.400 38.462 0.00 0.00 35.36 2.10
470 471 5.417894 TCCGTCTATGTGTGTAAGTCATCTT 59.582 40.000 0.00 0.00 37.65 2.40
471 472 4.948004 TCCGTCTATGTGTGTAAGTCATCT 59.052 41.667 0.00 0.00 0.00 2.90
472 473 5.244785 TCCGTCTATGTGTGTAAGTCATC 57.755 43.478 0.00 0.00 0.00 2.92
473 474 4.098044 CCTCCGTCTATGTGTGTAAGTCAT 59.902 45.833 0.00 0.00 0.00 3.06
474 475 3.442625 CCTCCGTCTATGTGTGTAAGTCA 59.557 47.826 0.00 0.00 0.00 3.41
475 476 3.181489 CCCTCCGTCTATGTGTGTAAGTC 60.181 52.174 0.00 0.00 0.00 3.01
476 477 2.758979 CCCTCCGTCTATGTGTGTAAGT 59.241 50.000 0.00 0.00 0.00 2.24
477 478 3.021695 TCCCTCCGTCTATGTGTGTAAG 58.978 50.000 0.00 0.00 0.00 2.34
478 479 3.021695 CTCCCTCCGTCTATGTGTGTAA 58.978 50.000 0.00 0.00 0.00 2.41
479 480 2.025605 ACTCCCTCCGTCTATGTGTGTA 60.026 50.000 0.00 0.00 0.00 2.90
480 481 1.272536 ACTCCCTCCGTCTATGTGTGT 60.273 52.381 0.00 0.00 0.00 3.72
481 482 1.475403 ACTCCCTCCGTCTATGTGTG 58.525 55.000 0.00 0.00 0.00 3.82
482 483 2.241685 ACTACTCCCTCCGTCTATGTGT 59.758 50.000 0.00 0.00 0.00 3.72
483 484 2.933573 ACTACTCCCTCCGTCTATGTG 58.066 52.381 0.00 0.00 0.00 3.21
484 485 3.715834 ACTACTACTCCCTCCGTCTATGT 59.284 47.826 0.00 0.00 0.00 2.29
485 486 4.354893 ACTACTACTCCCTCCGTCTATG 57.645 50.000 0.00 0.00 0.00 2.23
486 487 5.154418 AGTACTACTACTCCCTCCGTCTAT 58.846 45.833 0.00 0.00 0.00 1.98
487 488 4.551671 AGTACTACTACTCCCTCCGTCTA 58.448 47.826 0.00 0.00 0.00 2.59
488 489 3.383223 AGTACTACTACTCCCTCCGTCT 58.617 50.000 0.00 0.00 0.00 4.18
489 490 3.836365 AGTACTACTACTCCCTCCGTC 57.164 52.381 0.00 0.00 0.00 4.79
490 491 4.681074 GTAGTACTACTACTCCCTCCGT 57.319 50.000 23.17 0.00 45.70 4.69
515 516 2.120909 CCCATGGCACGATCCCAAC 61.121 63.158 6.09 0.00 35.67 3.77
610 611 6.160576 TCCAAAAATTTAAACTGCTGCTCT 57.839 33.333 0.00 0.00 0.00 4.09
647 935 2.645838 ATCCAAGGATCGGTGGAATG 57.354 50.000 17.27 0.00 46.78 2.67
655 943 0.463654 TCCGCCAAATCCAAGGATCG 60.464 55.000 1.37 1.77 33.08 3.69
689 977 6.536941 CCAACTTCTCTAATAAGGAGCTGTTC 59.463 42.308 0.00 0.00 30.39 3.18
694 982 5.360649 ACCCAACTTCTCTAATAAGGAGC 57.639 43.478 0.00 0.00 0.00 4.70
702 990 4.675976 TCAAACGACCCAACTTCTCTAA 57.324 40.909 0.00 0.00 0.00 2.10
901 4091 6.940739 AGCTATTTATAGAGTGGAATGCGAT 58.059 36.000 0.97 0.00 32.05 4.58
974 4171 2.322161 CCAAGAAAGAATGCAGCAACG 58.678 47.619 0.00 0.00 0.00 4.10
975 4172 2.064014 GCCAAGAAAGAATGCAGCAAC 58.936 47.619 0.00 0.00 0.00 4.17
976 4173 1.336148 CGCCAAGAAAGAATGCAGCAA 60.336 47.619 0.00 0.00 0.00 3.91
1068 4265 0.316841 GGAGATCGCTGATGAGGTCC 59.683 60.000 0.00 0.00 0.00 4.46
1253 4450 3.512516 GTGCGGCCAGGATCTTGC 61.513 66.667 2.24 0.00 0.00 4.01
1333 4530 0.391263 AACAAGCGGTCGATCTTCCC 60.391 55.000 0.00 0.00 0.00 3.97
1488 4691 1.299014 GGAGTCGATGCTGAGAGCG 60.299 63.158 0.00 0.00 46.26 5.03
1566 4769 1.725641 TGGCGATCTTGTACAGCTTG 58.274 50.000 0.00 0.00 0.00 4.01
1597 4800 4.415150 CAGCAGGCGGTGGATGGT 62.415 66.667 0.00 0.00 36.97 3.55
1652 4855 1.450312 CTGTTGAGCCCGTGGATCC 60.450 63.158 4.20 4.20 37.30 3.36
1689 4892 7.389884 ACAGAGACAACAATACTTCGTAGAGTA 59.610 37.037 0.00 0.00 38.43 2.59
1724 4927 1.990563 GCATCACATTTGCTCTGTTGC 59.009 47.619 0.00 0.00 37.14 4.17
1747 4953 3.442977 GCATCCTCAATGACAAGCTTCTT 59.557 43.478 0.00 0.00 37.59 2.52
1767 4973 1.999648 ATCTTTCAAGGCTTGGTGCA 58.000 45.000 25.92 9.50 45.15 4.57
1770 4976 3.766051 GGATCAATCTTTCAAGGCTTGGT 59.234 43.478 25.92 5.89 0.00 3.67
1774 4980 3.011032 AGTGGGATCAATCTTTCAAGGCT 59.989 43.478 0.00 0.00 0.00 4.58
1836 5042 0.532862 AGCCAGACACCGTCAGTTTG 60.533 55.000 0.00 0.00 34.60 2.93
1849 5055 2.231716 TTGCTAGACAGGTAGCCAGA 57.768 50.000 0.00 0.00 44.23 3.86
1850 5056 3.003480 GTTTTGCTAGACAGGTAGCCAG 58.997 50.000 0.00 0.00 44.23 4.85
1851 5057 2.370519 TGTTTTGCTAGACAGGTAGCCA 59.629 45.455 0.00 0.00 44.23 4.75
1852 5058 3.053831 TGTTTTGCTAGACAGGTAGCC 57.946 47.619 0.00 0.00 44.23 3.93
1853 5059 4.253685 TCATGTTTTGCTAGACAGGTAGC 58.746 43.478 3.72 0.00 44.96 3.58
1914 5120 0.537653 TCAAACCGGCCGATATCACA 59.462 50.000 30.73 0.12 0.00 3.58
1920 5126 2.828549 GGCATCAAACCGGCCGAT 60.829 61.111 30.73 6.36 38.04 4.18
1977 5183 7.201444 GCTTGGAACGAAAGATATATATGACGG 60.201 40.741 0.00 0.00 0.00 4.79
1984 5190 5.940470 GGGATGCTTGGAACGAAAGATATAT 59.060 40.000 0.00 0.00 0.00 0.86
1985 5191 5.305585 GGGATGCTTGGAACGAAAGATATA 58.694 41.667 0.00 0.00 0.00 0.86
1986 5192 4.137543 GGGATGCTTGGAACGAAAGATAT 58.862 43.478 0.00 0.00 0.00 1.63
1987 5193 3.541632 GGGATGCTTGGAACGAAAGATA 58.458 45.455 0.00 0.00 0.00 1.98
2051 5257 7.505923 TCCTGCAGATAACATACATAGTACACT 59.494 37.037 17.39 0.00 0.00 3.55
2052 5258 7.658261 TCCTGCAGATAACATACATAGTACAC 58.342 38.462 17.39 0.00 0.00 2.90
2053 5259 7.833285 TCCTGCAGATAACATACATAGTACA 57.167 36.000 17.39 0.00 0.00 2.90
2054 5260 8.979574 GTTTCCTGCAGATAACATACATAGTAC 58.020 37.037 17.39 0.00 0.00 2.73
2055 5261 8.924303 AGTTTCCTGCAGATAACATACATAGTA 58.076 33.333 23.80 0.00 0.00 1.82
2056 5262 7.712639 CAGTTTCCTGCAGATAACATACATAGT 59.287 37.037 23.80 6.50 0.00 2.12
2057 5263 7.928167 TCAGTTTCCTGCAGATAACATACATAG 59.072 37.037 23.80 3.31 38.66 2.23
2069 5275 2.210116 GACGTTTCAGTTTCCTGCAGA 58.790 47.619 17.39 0.00 38.66 4.26
2087 5293 3.119495 GGAACCATAAACAGGTGCATGAC 60.119 47.826 0.00 0.00 39.86 3.06
2098 5304 6.332630 CAATTCAGGTGATGGAACCATAAAC 58.667 40.000 6.31 2.09 43.20 2.01
2158 5364 6.205270 TGTTTGCACATCAGCATAGGTATATG 59.795 38.462 0.00 0.00 45.19 1.78
2198 5404 9.408648 CCCTTCATTTCTTTATGTAAGGTGTAT 57.591 33.333 0.00 0.00 34.50 2.29
2199 5405 8.607713 TCCCTTCATTTCTTTATGTAAGGTGTA 58.392 33.333 0.00 0.00 34.50 2.90
2200 5406 7.466804 TCCCTTCATTTCTTTATGTAAGGTGT 58.533 34.615 0.00 0.00 34.50 4.16
2201 5407 7.611855 ACTCCCTTCATTTCTTTATGTAAGGTG 59.388 37.037 0.00 0.00 34.50 4.00
2202 5408 7.611855 CACTCCCTTCATTTCTTTATGTAAGGT 59.388 37.037 0.00 0.00 34.50 3.50
2204 5410 8.567285 ACACTCCCTTCATTTCTTTATGTAAG 57.433 34.615 0.00 0.00 35.04 2.34
2207 5413 8.960591 CATAACACTCCCTTCATTTCTTTATGT 58.039 33.333 0.00 0.00 0.00 2.29
2208 5414 8.960591 ACATAACACTCCCTTCATTTCTTTATG 58.039 33.333 0.00 0.00 32.13 1.90
2213 5419 7.633789 ACATACATAACACTCCCTTCATTTCT 58.366 34.615 0.00 0.00 0.00 2.52
2214 5420 7.865706 ACATACATAACACTCCCTTCATTTC 57.134 36.000 0.00 0.00 0.00 2.17
2215 5421 8.548877 AGTACATACATAACACTCCCTTCATTT 58.451 33.333 0.00 0.00 0.00 2.32
2216 5422 8.090788 AGTACATACATAACACTCCCTTCATT 57.909 34.615 0.00 0.00 0.00 2.57
2217 5423 7.676683 AGTACATACATAACACTCCCTTCAT 57.323 36.000 0.00 0.00 0.00 2.57
2241 5487 8.603898 TCCCTTCAAGAACAAGACTACATATA 57.396 34.615 0.00 0.00 0.00 0.86
2242 5488 7.496346 TCCCTTCAAGAACAAGACTACATAT 57.504 36.000 0.00 0.00 0.00 1.78
2280 5526 3.443045 GCCACCCGTCTGCCATTG 61.443 66.667 0.00 0.00 0.00 2.82
2344 5591 4.624015 CAGATTTTGCACAACAATCTGGT 58.376 39.130 23.28 6.58 45.46 4.00
2355 5602 6.917217 AGCTACTATTCTCAGATTTTGCAC 57.083 37.500 0.00 0.00 0.00 4.57
2356 5603 7.495934 GGTAAGCTACTATTCTCAGATTTTGCA 59.504 37.037 0.00 0.00 0.00 4.08
2386 5640 9.626045 AAACTTTCAGTTTGAAAAGTTCTAGTG 57.374 29.630 12.15 0.00 45.83 2.74
2402 5672 7.012044 ACGCAAACTAGAACATAAACTTTCAGT 59.988 33.333 0.00 0.00 0.00 3.41
2410 5680 6.854496 AGACAACGCAAACTAGAACATAAA 57.146 33.333 0.00 0.00 0.00 1.40
2418 5688 3.059597 CAGACCAAGACAACGCAAACTAG 60.060 47.826 0.00 0.00 0.00 2.57
2432 5702 1.949525 CTTCACCCAACACAGACCAAG 59.050 52.381 0.00 0.00 0.00 3.61
2457 5727 7.864379 GGATGCACTTTCATAGACCAAATAATG 59.136 37.037 0.00 0.00 0.00 1.90
2477 5748 0.320050 TCGTAGCTGTGTTGGATGCA 59.680 50.000 0.00 0.00 0.00 3.96
2486 5757 2.993220 TGCATAACAAGTCGTAGCTGTG 59.007 45.455 0.00 0.00 0.00 3.66
2531 5803 9.503399 AAACTCTAGTTCACGAAAAGGAAATAT 57.497 29.630 0.00 0.00 37.25 1.28
2541 5813 8.882415 AATGAAAGTAAACTCTAGTTCACGAA 57.118 30.769 0.00 0.00 37.25 3.85
2581 5887 5.773575 ACCACTATACGCTGTGAAGATATG 58.226 41.667 0.00 0.00 36.38 1.78
2598 5904 2.756760 GGTACACAGGATCGAACCACTA 59.243 50.000 14.80 0.00 0.00 2.74
2686 5992 3.650950 AACATGCCTCCACCCGCT 61.651 61.111 0.00 0.00 0.00 5.52
2694 6000 1.425412 CTTTGCTTGCAACATGCCTC 58.575 50.000 7.60 0.00 44.23 4.70
2701 6007 1.211743 GCAGTTCCTTTGCTTGCAAC 58.788 50.000 7.60 0.00 38.51 4.17
2729 6035 3.443045 CGCAATGGTGGCACCCTC 61.443 66.667 32.61 17.37 37.50 4.30
2737 6043 1.675310 TTCTGGAGCCGCAATGGTG 60.675 57.895 0.00 0.00 41.21 4.17
2738 6044 1.675641 GTTCTGGAGCCGCAATGGT 60.676 57.895 0.00 0.00 41.21 3.55
2739 6045 1.651240 CTGTTCTGGAGCCGCAATGG 61.651 60.000 0.00 0.00 42.50 3.16
2740 6046 0.957395 ACTGTTCTGGAGCCGCAATG 60.957 55.000 0.00 0.00 0.00 2.82
2741 6047 0.674895 GACTGTTCTGGAGCCGCAAT 60.675 55.000 0.00 0.00 0.00 3.56
2751 6780 1.734477 CTGGCGGTCGACTGTTCTG 60.734 63.158 24.68 16.42 0.00 3.02
2762 6791 1.603455 CACCAATTGGACTGGCGGT 60.603 57.895 31.22 0.00 37.48 5.68
2764 6793 1.172180 ACACACCAATTGGACTGGCG 61.172 55.000 31.22 16.16 37.48 5.69
2798 6827 0.893270 CATGGTGCGGAACTTTCCCA 60.893 55.000 2.29 0.00 44.67 4.37
2802 6831 2.275380 GGCCATGGTGCGGAACTTT 61.275 57.895 14.67 0.00 0.00 2.66
2809 6838 0.947244 GAAGAATAGGCCATGGTGCG 59.053 55.000 14.67 0.00 0.00 5.34
2812 6841 1.912862 AGGGAAGAATAGGCCATGGT 58.087 50.000 14.67 0.00 0.00 3.55
2821 6850 7.324388 TCACAGAAACCTTTAGGGAAGAATA 57.676 36.000 0.10 0.00 40.27 1.75
2823 6852 5.640158 TCACAGAAACCTTTAGGGAAGAA 57.360 39.130 0.10 0.00 40.27 2.52
2831 6860 9.349713 ACAATAACAGAATCACAGAAACCTTTA 57.650 29.630 0.00 0.00 0.00 1.85
2832 6861 8.137437 CACAATAACAGAATCACAGAAACCTTT 58.863 33.333 0.00 0.00 0.00 3.11
2833 6862 7.285401 ACACAATAACAGAATCACAGAAACCTT 59.715 33.333 0.00 0.00 0.00 3.50
2834 6863 6.772716 ACACAATAACAGAATCACAGAAACCT 59.227 34.615 0.00 0.00 0.00 3.50
2835 6864 6.970484 ACACAATAACAGAATCACAGAAACC 58.030 36.000 0.00 0.00 0.00 3.27
2836 6865 9.944663 TTAACACAATAACAGAATCACAGAAAC 57.055 29.630 0.00 0.00 0.00 2.78
2840 6869 9.265938 CGAATTAACACAATAACAGAATCACAG 57.734 33.333 0.00 0.00 0.00 3.66
2841 6870 8.779303 ACGAATTAACACAATAACAGAATCACA 58.221 29.630 0.00 0.00 0.00 3.58
2849 6878 9.171701 GCAACTTTACGAATTAACACAATAACA 57.828 29.630 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.