Multiple sequence alignment - TraesCS5D01G361000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G361000 chr5D 100.000 7428 0 0 1 7428 440641345 440648772 0.000000e+00 13718
1 TraesCS5D01G361000 chr5D 100.000 69 0 0 6635 6703 440647911 440647979 2.180000e-25 128
2 TraesCS5D01G361000 chr5D 100.000 69 0 0 6567 6635 440647979 440648047 2.180000e-25 128
3 TraesCS5D01G361000 chr5B 92.891 3967 183 40 2680 6635 536048361 536052239 0.000000e+00 5672
4 TraesCS5D01G361000 chr5B 87.818 1929 141 51 586 2450 536045487 536047385 0.000000e+00 2174
5 TraesCS5D01G361000 chr5B 95.970 943 36 2 2790 3731 19011161 19012102 0.000000e+00 1530
6 TraesCS5D01G361000 chr5B 92.377 551 32 8 2446 2993 536047495 536048038 0.000000e+00 776
7 TraesCS5D01G361000 chr5B 92.979 527 26 7 6909 7428 536052480 536053002 0.000000e+00 758
8 TraesCS5D01G361000 chr5B 84.155 568 65 17 13 574 536044897 536045445 1.840000e-145 527
9 TraesCS5D01G361000 chr5B 90.780 282 16 6 6636 6913 536052172 536052447 1.180000e-97 368
10 TraesCS5D01G361000 chr5B 82.096 458 50 18 2012 2450 536048043 536048487 5.480000e-96 363
11 TraesCS5D01G361000 chr5B 85.612 139 18 1 2446 2582 536047063 536047201 2.160000e-30 145
12 TraesCS5D01G361000 chr5A 94.365 2449 102 16 4212 6635 556682566 556685003 0.000000e+00 3725
13 TraesCS5D01G361000 chr5A 95.359 1659 71 4 2446 4104 556680681 556682333 0.000000e+00 2632
14 TraesCS5D01G361000 chr5A 84.567 1892 127 80 599 2450 556678839 556680605 0.000000e+00 1724
15 TraesCS5D01G361000 chr5A 94.573 737 32 3 5655 6389 134456469 134457199 0.000000e+00 1133
16 TraesCS5D01G361000 chr5A 91.858 479 29 4 6950 7428 556685793 556686261 0.000000e+00 660
17 TraesCS5D01G361000 chr5A 93.730 319 20 0 1575 1893 557962112 557962430 5.210000e-131 479
18 TraesCS5D01G361000 chr5A 87.931 232 14 3 6720 6951 556685135 556685352 2.060000e-65 261
19 TraesCS5D01G361000 chr5A 93.103 116 8 0 4102 4217 556682392 556682507 3.560000e-38 171
20 TraesCS5D01G361000 chr5A 84.354 147 20 1 2446 2589 556680277 556680423 2.790000e-29 141
21 TraesCS5D01G361000 chr5A 92.941 85 5 1 6635 6719 556684936 556685019 1.010000e-23 122
22 TraesCS5D01G361000 chr4A 96.864 1435 41 3 2297 3731 647885798 647887228 0.000000e+00 2398
23 TraesCS5D01G361000 chr4A 92.480 492 25 7 1013 1500 647885310 647885793 0.000000e+00 693
24 TraesCS5D01G361000 chr4A 94.044 319 19 0 1575 1893 647887230 647887548 1.120000e-132 484
25 TraesCS5D01G361000 chr2B 97.162 1022 27 2 2710 3731 761955532 761956551 0.000000e+00 1725
26 TraesCS5D01G361000 chr2B 89.112 698 47 13 1030 1702 219844808 219844115 0.000000e+00 841
27 TraesCS5D01G361000 chr2B 87.106 698 50 9 1030 1702 684093628 684092946 0.000000e+00 754
28 TraesCS5D01G361000 chr2B 93.210 162 9 2 5843 6004 184669213 184669372 3.460000e-58 237
29 TraesCS5D01G361000 chr2B 92.169 166 10 3 5843 6008 103990417 103990579 1.610000e-56 231
30 TraesCS5D01G361000 chr7B 96.078 1020 39 1 2712 3731 675573372 675574390 0.000000e+00 1661
31 TraesCS5D01G361000 chr7B 95.988 1022 39 2 2710 3731 688959703 688960722 0.000000e+00 1659
32 TraesCS5D01G361000 chr7B 89.557 699 44 9 1030 1703 605714272 605713578 0.000000e+00 859
33 TraesCS5D01G361000 chr7B 94.231 312 18 0 1582 1893 688960731 688961042 1.880000e-130 477
34 TraesCS5D01G361000 chr7B 92.476 319 24 0 1575 1893 675574392 675574710 2.440000e-124 457
35 TraesCS5D01G361000 chr7B 93.210 162 9 2 5843 6004 42780635 42780794 3.460000e-58 237
36 TraesCS5D01G361000 chr7B 92.308 169 10 3 5837 6004 713863357 713863191 3.460000e-58 237
37 TraesCS5D01G361000 chr7B 93.210 162 9 2 5843 6004 747446356 747446197 3.460000e-58 237
38 TraesCS5D01G361000 chr1B 88.613 1089 59 23 1120 2177 615798154 615797100 0.000000e+00 1264
39 TraesCS5D01G361000 chr1B 85.542 581 36 21 1678 2249 543850284 543849743 1.400000e-156 564
40 TraesCS5D01G361000 chr1B 85.542 581 36 21 1678 2249 641575388 641574847 1.400000e-156 564
41 TraesCS5D01G361000 chr1B 90.083 121 12 0 2446 2566 543849863 543849743 2.770000e-34 158
42 TraesCS5D01G361000 chr1B 90.083 121 12 0 2446 2566 641574967 641574847 2.770000e-34 158
43 TraesCS5D01G361000 chr6B 87.249 847 52 21 1093 1893 241093589 241094425 0.000000e+00 915
44 TraesCS5D01G361000 chr6B 86.219 849 62 24 1092 1893 242427265 242426425 0.000000e+00 869
45 TraesCS5D01G361000 chr4B 87.379 824 48 23 1103 1880 129046652 129045839 0.000000e+00 894
46 TraesCS5D01G361000 chr4B 91.026 156 13 1 5843 5998 14888073 14887919 7.550000e-50 209
47 TraesCS5D01G361000 chr7A 92.593 513 17 7 1013 1525 21534664 21535155 0.000000e+00 717
48 TraesCS5D01G361000 chr7A 94.304 316 18 0 1578 1893 21535159 21535474 1.120000e-132 484
49 TraesCS5D01G361000 chr7D 93.168 483 23 5 1696 2177 70220698 70221171 0.000000e+00 701
50 TraesCS5D01G361000 chr3B 85.172 553 39 22 1700 2249 145841252 145841764 1.840000e-145 527
51 TraesCS5D01G361000 chr3B 89.256 121 13 0 2446 2566 145841644 145841764 1.290000e-32 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G361000 chr5D 440641345 440648772 7427 False 4658.000000 13718 100.000000 1 7428 3 chr5D.!!$F1 7427
1 TraesCS5D01G361000 chr5B 19011161 19012102 941 False 1530.000000 1530 95.970000 2790 3731 1 chr5B.!!$F1 941
2 TraesCS5D01G361000 chr5B 536044897 536053002 8105 False 1347.875000 5672 88.588500 13 7428 8 chr5B.!!$F2 7415
3 TraesCS5D01G361000 chr5A 556678839 556686261 7422 False 1179.500000 3725 90.559750 599 7428 8 chr5A.!!$F3 6829
4 TraesCS5D01G361000 chr5A 134456469 134457199 730 False 1133.000000 1133 94.573000 5655 6389 1 chr5A.!!$F1 734
5 TraesCS5D01G361000 chr4A 647885310 647887548 2238 False 1191.666667 2398 94.462667 1013 3731 3 chr4A.!!$F1 2718
6 TraesCS5D01G361000 chr2B 761955532 761956551 1019 False 1725.000000 1725 97.162000 2710 3731 1 chr2B.!!$F3 1021
7 TraesCS5D01G361000 chr2B 219844115 219844808 693 True 841.000000 841 89.112000 1030 1702 1 chr2B.!!$R1 672
8 TraesCS5D01G361000 chr2B 684092946 684093628 682 True 754.000000 754 87.106000 1030 1702 1 chr2B.!!$R2 672
9 TraesCS5D01G361000 chr7B 688959703 688961042 1339 False 1068.000000 1659 95.109500 1582 3731 2 chr7B.!!$F3 2149
10 TraesCS5D01G361000 chr7B 675573372 675574710 1338 False 1059.000000 1661 94.277000 1575 3731 2 chr7B.!!$F2 2156
11 TraesCS5D01G361000 chr7B 605713578 605714272 694 True 859.000000 859 89.557000 1030 1703 1 chr7B.!!$R1 673
12 TraesCS5D01G361000 chr1B 615797100 615798154 1054 True 1264.000000 1264 88.613000 1120 2177 1 chr1B.!!$R1 1057
13 TraesCS5D01G361000 chr1B 543849743 543850284 541 True 361.000000 564 87.812500 1678 2566 2 chr1B.!!$R2 888
14 TraesCS5D01G361000 chr1B 641574847 641575388 541 True 361.000000 564 87.812500 1678 2566 2 chr1B.!!$R3 888
15 TraesCS5D01G361000 chr6B 241093589 241094425 836 False 915.000000 915 87.249000 1093 1893 1 chr6B.!!$F1 800
16 TraesCS5D01G361000 chr6B 242426425 242427265 840 True 869.000000 869 86.219000 1092 1893 1 chr6B.!!$R1 801
17 TraesCS5D01G361000 chr4B 129045839 129046652 813 True 894.000000 894 87.379000 1103 1880 1 chr4B.!!$R2 777
18 TraesCS5D01G361000 chr7A 21534664 21535474 810 False 600.500000 717 93.448500 1013 1893 2 chr7A.!!$F1 880
19 TraesCS5D01G361000 chr3B 145841252 145841764 512 False 339.500000 527 87.214000 1700 2566 2 chr3B.!!$F1 866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
995 1070 0.319813 TCACACGCATCTCACCACAG 60.320 55.000 0.00 0.0 0.00 3.66 F
1850 3386 0.809636 TATGTGTGGATCGCGCTTGG 60.810 55.000 5.56 0.0 0.00 3.61 F
2158 3707 0.594284 GCTCGTGGCGTAGTATGGTC 60.594 60.000 0.00 0.0 0.00 4.02 F
2163 3712 1.066918 GGCGTAGTATGGTCACCCG 59.933 63.158 0.00 0.0 0.00 5.28 F
3682 5987 1.196104 TTACCCCACTACTTGCGGCT 61.196 55.000 0.00 0.0 0.00 5.52 F
4615 7052 2.108970 GGAAGGGTCCAGGTACACTAG 58.891 57.143 0.00 0.0 44.26 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 3691 0.526954 GGTGACCATACTACGCCACG 60.527 60.000 0.00 0.00 34.76 4.94 R
3077 5381 2.268298 CATAGTCTACCACAACGCCAC 58.732 52.381 0.00 0.00 0.00 5.01 R
3328 5632 3.136763 ACATCAAGTCAGTGCACAGAAG 58.863 45.455 21.04 10.11 0.00 2.85 R
4059 6364 3.550678 GTCAAACTAATCCGTTCGCCTAG 59.449 47.826 0.00 0.00 0.00 3.02 R
4766 7203 2.977914 TCTCCAAGAGCTGCATGTAAC 58.022 47.619 1.02 0.00 0.00 2.50 R
6590 9080 2.115291 GCCAAGCACGATCCCTTCC 61.115 63.158 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.585047 GGAAGTTAAAGGATTGTGCGATACT 59.415 40.000 0.00 0.00 0.00 2.12
26 27 5.978814 AGTTAAAGGATTGTGCGATACTCT 58.021 37.500 0.00 0.00 0.00 3.24
38 39 5.184479 TGTGCGATACTCTACTACAAGGTTT 59.816 40.000 0.00 0.00 0.00 3.27
48 49 8.050930 ACTCTACTACAAGGTTTCCAAAGAAAA 58.949 33.333 0.00 0.00 43.48 2.29
82 84 5.695851 AGTCAAAGAAAATGCTCAATCGT 57.304 34.783 0.00 0.00 0.00 3.73
83 85 5.455392 AGTCAAAGAAAATGCTCAATCGTG 58.545 37.500 0.00 0.00 0.00 4.35
94 96 1.000843 CTCAATCGTGAGGACACACCA 59.999 52.381 0.00 0.00 46.55 4.17
95 97 1.000843 TCAATCGTGAGGACACACCAG 59.999 52.381 0.00 0.00 46.20 4.00
99 101 0.603707 CGTGAGGACACACCAGCAAT 60.604 55.000 0.00 0.00 46.20 3.56
103 105 4.513442 GTGAGGACACACCAGCAATAATA 58.487 43.478 0.00 0.00 45.32 0.98
156 159 9.158233 CTCAGCCAAATCATGAATTTAAATTGT 57.842 29.630 17.98 4.12 35.77 2.71
171 174 9.897744 AATTTAAATTGTCAGATACGCATATGG 57.102 29.630 12.62 0.00 0.00 2.74
188 191 1.367471 GGCACAAGGTCCAAAAGGC 59.633 57.895 0.00 0.00 0.00 4.35
191 194 1.070601 GCACAAGGTCCAAAAGGCAAT 59.929 47.619 0.00 0.00 0.00 3.56
192 195 2.485302 GCACAAGGTCCAAAAGGCAATT 60.485 45.455 0.00 0.00 0.00 2.32
200 203 4.441792 GTCCAAAAGGCAATTCAAGTTGT 58.558 39.130 2.11 0.00 0.00 3.32
209 212 4.540824 GCAATTCAAGTTGTGTTCTCTCC 58.459 43.478 2.11 0.00 0.00 3.71
212 215 4.437682 TTCAAGTTGTGTTCTCTCCCAT 57.562 40.909 2.11 0.00 0.00 4.00
220 223 2.107366 TGTTCTCTCCCATCGCATACA 58.893 47.619 0.00 0.00 0.00 2.29
248 251 2.335316 ACCCGTCAGTGCTTTAAACA 57.665 45.000 0.00 0.00 0.00 2.83
252 255 3.252215 CCCGTCAGTGCTTTAAACATGAA 59.748 43.478 0.00 0.00 0.00 2.57
254 257 5.088739 CCGTCAGTGCTTTAAACATGAATC 58.911 41.667 0.00 0.00 0.00 2.52
268 271 3.309682 ACATGAATCTACACCGCGAAATG 59.690 43.478 8.23 5.44 0.00 2.32
280 283 2.600556 CCGCGAAATGCACATGTCATAG 60.601 50.000 8.23 0.77 46.97 2.23
287 292 4.564782 ATGCACATGTCATAGGATAGGG 57.435 45.455 0.00 0.00 0.00 3.53
291 296 4.081420 GCACATGTCATAGGATAGGGGTAG 60.081 50.000 0.00 0.00 0.00 3.18
295 300 3.079072 TGTCATAGGATAGGGGTAGGCAT 59.921 47.826 0.00 0.00 0.00 4.40
303 308 1.754234 GGGGTAGGCATGCACCAAG 60.754 63.158 24.17 0.00 34.09 3.61
309 314 4.789075 GCATGCACCAAGCTGCCG 62.789 66.667 14.21 0.00 45.94 5.69
338 343 2.284331 TTGGGGGAGTAGCGAGCA 60.284 61.111 0.00 0.00 0.00 4.26
341 346 1.271840 TGGGGGAGTAGCGAGCAAAT 61.272 55.000 0.00 0.00 0.00 2.32
359 364 3.231734 TGCTTCGTTGCATGTAGCT 57.768 47.368 15.63 0.00 45.94 3.32
360 365 2.378445 TGCTTCGTTGCATGTAGCTA 57.622 45.000 15.63 0.00 45.94 3.32
361 366 1.999735 TGCTTCGTTGCATGTAGCTAC 59.000 47.619 17.30 17.30 45.94 3.58
391 396 1.004277 TGTAGCTTTAAGGGTGGCCTG 59.996 52.381 3.32 0.00 0.00 4.85
395 400 1.780911 TTTAAGGGTGGCCTGGGGT 60.781 57.895 3.32 0.00 0.00 4.95
396 401 2.087857 TTTAAGGGTGGCCTGGGGTG 62.088 60.000 3.32 0.00 0.00 4.61
410 415 1.700042 GGGGTGTAGGCAGATCCTGG 61.700 65.000 0.00 0.00 46.98 4.45
422 427 1.142465 AGATCCTGGCTACAGCATTGG 59.858 52.381 3.24 2.23 43.53 3.16
467 472 7.390440 ACGAGAGAATATTTTCAAACACATGGA 59.610 33.333 8.56 0.00 34.08 3.41
474 479 9.590451 AATATTTTCAAACACATGGATAAGCTG 57.410 29.630 0.00 0.00 0.00 4.24
497 502 5.045505 TGGGAGCCCTTTAAAACAAGTTTTT 60.046 36.000 15.21 0.00 39.02 1.94
500 505 5.968254 AGCCCTTTAAAACAAGTTTTTCGA 58.032 33.333 15.21 1.58 42.22 3.71
501 506 6.399743 AGCCCTTTAAAACAAGTTTTTCGAA 58.600 32.000 15.21 0.00 42.22 3.71
574 579 4.881273 TGCATATGTATGGAGCGAAAACTT 59.119 37.500 4.29 0.00 34.32 2.66
576 581 6.127758 TGCATATGTATGGAGCGAAAACTTTT 60.128 34.615 4.29 0.00 34.32 2.27
577 582 6.197096 GCATATGTATGGAGCGAAAACTTTTG 59.803 38.462 4.29 0.00 34.32 2.44
578 583 5.705609 ATGTATGGAGCGAAAACTTTTGT 57.294 34.783 0.00 0.00 0.00 2.83
579 584 5.508200 TGTATGGAGCGAAAACTTTTGTT 57.492 34.783 0.00 0.00 45.94 2.83
630 665 4.215399 CGGTGCCAATGGTATTATTCGAAT 59.785 41.667 16.15 16.15 0.00 3.34
665 700 3.008704 AGCCTAACCACACCGATTAGTTT 59.991 43.478 0.00 0.00 0.00 2.66
667 702 4.216902 GCCTAACCACACCGATTAGTTTTT 59.783 41.667 0.00 0.00 0.00 1.94
729 764 1.565305 GAGCAGTAATGAGAGCACGG 58.435 55.000 0.00 0.00 0.00 4.94
780 819 2.683859 GCCCGTAACAAACCTCGCC 61.684 63.158 0.00 0.00 0.00 5.54
781 820 2.036571 CCCGTAACAAACCTCGCCC 61.037 63.158 0.00 0.00 0.00 6.13
782 821 2.385091 CCGTAACAAACCTCGCCCG 61.385 63.158 0.00 0.00 0.00 6.13
783 822 2.865308 GTAACAAACCTCGCCCGC 59.135 61.111 0.00 0.00 0.00 6.13
907 982 3.055719 CCGCAGGCACATTCCGTT 61.056 61.111 0.00 0.00 46.14 4.44
970 1045 1.521423 CTATAAGAAAACGGAGCCGCG 59.479 52.381 9.14 0.00 44.19 6.46
987 1062 2.125912 GTCGCCTCACACGCATCT 60.126 61.111 0.00 0.00 0.00 2.90
995 1070 0.319813 TCACACGCATCTCACCACAG 60.320 55.000 0.00 0.00 0.00 3.66
1046 1121 1.826487 GCTCCCGTCCTCTCCTCTC 60.826 68.421 0.00 0.00 0.00 3.20
1047 1122 1.152839 CTCCCGTCCTCTCCTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
1048 1123 1.619975 TCCCGTCCTCTCCTCTCCT 60.620 63.158 0.00 0.00 0.00 3.69
1049 1124 1.152839 CCCGTCCTCTCCTCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1050 1125 1.641552 CCCGTCCTCTCCTCTCCTCT 61.642 65.000 0.00 0.00 0.00 3.69
1059 1144 1.456705 CCTCTCCTCTTCCCCCGAG 60.457 68.421 0.00 0.00 0.00 4.63
1316 1432 3.134792 ATCAGCCTCGTCTCGCGT 61.135 61.111 5.77 0.00 42.13 6.01
1388 1513 1.471964 CGACGATCTGCTACTTGCTC 58.528 55.000 0.00 0.00 43.37 4.26
1553 1897 2.425312 TCGTCTCAGATGCTTCTTCCTC 59.575 50.000 0.00 0.00 0.00 3.71
1585 1940 3.302675 CGAATGTTCAGTCAGTGTGTGTG 60.303 47.826 1.50 0.00 0.00 3.82
1586 1941 2.022764 TGTTCAGTCAGTGTGTGTGG 57.977 50.000 0.00 0.00 0.00 4.17
1592 3121 1.067416 TCAGTGTGTGTGGACGCTC 59.933 57.895 0.00 0.00 34.39 5.03
1844 3380 1.400629 GCATGCATATGTGTGGATCGC 60.401 52.381 14.21 0.00 36.65 4.58
1850 3386 0.809636 TATGTGTGGATCGCGCTTGG 60.810 55.000 5.56 0.00 0.00 3.61
1867 3408 3.696051 GCTTGGATATGCTGGTTTCTTCA 59.304 43.478 0.00 0.00 0.00 3.02
1945 3487 1.455248 GGCCGTGGTTTTAGCACATA 58.545 50.000 9.35 0.00 46.17 2.29
2142 3691 7.445945 ACTTTATCATCAGTTACTATGGGCTC 58.554 38.462 0.00 0.00 0.00 4.70
2148 3697 0.874607 GTTACTATGGGCTCGTGGCG 60.875 60.000 4.88 0.00 42.94 5.69
2158 3707 0.594284 GCTCGTGGCGTAGTATGGTC 60.594 60.000 0.00 0.00 0.00 4.02
2163 3712 1.066918 GGCGTAGTATGGTCACCCG 59.933 63.158 0.00 0.00 0.00 5.28
2169 3718 4.293415 CGTAGTATGGTCACCCGTATTTC 58.707 47.826 0.00 0.00 34.72 2.17
2180 3729 7.664731 TGGTCACCCGTATTTCTGTTAATTTTA 59.335 33.333 0.00 0.00 0.00 1.52
2223 3774 9.105844 AGATCCACCTGCTATTATACTTATTGT 57.894 33.333 0.00 0.00 0.00 2.71
2265 3819 4.592942 TCCAAACTTCATGATCTGGAAGG 58.407 43.478 22.41 11.57 43.70 3.46
2275 3834 4.794311 TGATCTGGAAGGGCATGAAATA 57.206 40.909 0.00 0.00 0.00 1.40
2320 3879 2.573941 AGGCTCCGTACGTTTATGTC 57.426 50.000 15.21 0.88 0.00 3.06
2334 3893 6.238648 ACGTTTATGTCCCTTCTCTTGATTT 58.761 36.000 0.00 0.00 0.00 2.17
2344 3903 2.430465 TCTCTTGATTTGCTGTGGCTC 58.570 47.619 0.00 0.00 39.59 4.70
2399 3958 9.669353 CCAAGTGCATTAATGAATTAGTCATAC 57.331 33.333 19.73 0.00 46.80 2.39
2420 3979 5.762825 ACAATTGCTATTGCCTACTCATG 57.237 39.130 18.92 0.00 44.05 3.07
2437 3996 6.064846 ACTCATGTTCATTCTTGTTGTGAC 57.935 37.500 0.00 0.00 0.00 3.67
2439 3998 6.263842 ACTCATGTTCATTCTTGTTGTGACAT 59.736 34.615 0.00 0.00 35.29 3.06
2440 3999 7.041635 TCATGTTCATTCTTGTTGTGACATT 57.958 32.000 0.00 0.00 35.29 2.71
2532 4206 7.933577 TCACTTTTAGATCCACCTGCTATTATG 59.066 37.037 0.00 0.00 0.00 1.90
2600 4274 9.123902 TCTGGAAGGACATGAACAATATTAATG 57.876 33.333 0.00 0.00 0.00 1.90
2601 4275 8.821686 TGGAAGGACATGAACAATATTAATGT 57.178 30.769 0.00 5.43 34.28 2.71
2668 4342 8.768501 TTCATGTCACCTTCTATACTCTGTAT 57.231 34.615 0.00 0.00 0.00 2.29
2674 4348 9.339850 GTCACCTTCTATACTCTGTATGTTCTA 57.660 37.037 0.96 0.00 0.00 2.10
2694 4368 9.593134 TGTTCTATTCTTTCTCTTGATTAGCTC 57.407 33.333 0.00 0.00 0.00 4.09
2788 4462 6.801539 TTGACTGTACTCATTGTTCATTCC 57.198 37.500 0.00 0.00 29.14 3.01
3077 5381 6.088483 CCAGTGAAACATTGATCATTTGAACG 59.912 38.462 11.88 0.00 41.43 3.95
3208 5512 7.175104 TCTGCTTCATTTTTAAGTCCTACCAT 58.825 34.615 0.00 0.00 0.00 3.55
3682 5987 1.196104 TTACCCCACTACTTGCGGCT 61.196 55.000 0.00 0.00 0.00 5.52
4059 6364 5.358160 AGCACAAATGGCTTAACCTTCTATC 59.642 40.000 0.00 0.00 38.81 2.08
4105 6472 5.182950 CAGGTTGATTGGTTGCATACTACAA 59.817 40.000 0.00 0.00 0.00 2.41
4106 6473 5.951747 AGGTTGATTGGTTGCATACTACAAT 59.048 36.000 0.00 0.00 0.00 2.71
4150 6517 2.497273 ACATGGATTAGTTTGCCCTTGC 59.503 45.455 0.00 0.00 38.26 4.01
4219 6650 8.654230 AATCTATGTAGTGTATGCTTCTTGTG 57.346 34.615 0.00 0.00 0.00 3.33
4386 6823 3.073062 ACTCAGACAACTTGGGTGCTATT 59.927 43.478 0.00 0.00 0.00 1.73
4413 6850 7.379059 TGACATCAGTATCCAAATATGACCT 57.621 36.000 0.00 0.00 0.00 3.85
4499 6936 7.293299 TGGGATTCTTAACCATCACAGAGATAT 59.707 37.037 0.00 0.00 34.43 1.63
4600 7037 3.006323 CCCTCATCTCATACGAAGGAAGG 59.994 52.174 0.00 0.00 0.00 3.46
4615 7052 2.108970 GGAAGGGTCCAGGTACACTAG 58.891 57.143 0.00 0.00 44.26 2.57
4618 7055 4.347607 GAAGGGTCCAGGTACACTAGTAA 58.652 47.826 0.00 0.00 29.67 2.24
4628 7065 6.156429 CCAGGTACACTAGTAATTTCCTCCTT 59.844 42.308 0.00 0.00 30.67 3.36
4635 7072 3.766545 AGTAATTTCCTCCTTGCTTGCA 58.233 40.909 0.00 0.00 0.00 4.08
4642 7079 4.778213 TCCTCCTTGCTTGCATATTACT 57.222 40.909 0.00 0.00 0.00 2.24
4643 7080 4.454678 TCCTCCTTGCTTGCATATTACTG 58.545 43.478 0.00 0.00 0.00 2.74
4649 7086 5.297776 CCTTGCTTGCATATTACTGTAGCTT 59.702 40.000 0.00 0.00 31.47 3.74
4690 7127 8.147704 TGATAAGCATACATCGAAAGTAATGGA 58.852 33.333 5.36 0.00 0.00 3.41
4716 7153 7.127042 TGTAGTGTAATTTGTAAGTTGCAACG 58.873 34.615 23.21 0.00 0.00 4.10
4721 7158 8.960075 GTGTAATTTGTAAGTTGCAACGTTAAT 58.040 29.630 22.84 15.95 0.00 1.40
4977 7416 4.455606 ACCTGTAAGAATCTAAGCCATGC 58.544 43.478 0.00 0.00 34.07 4.06
4998 7437 5.880901 TGCCTTCCTTTGATTAAGAACTCT 58.119 37.500 0.00 0.00 35.80 3.24
4999 7438 5.940470 TGCCTTCCTTTGATTAAGAACTCTC 59.060 40.000 0.00 0.00 35.80 3.20
5310 7752 4.385358 TCGTGATGTGCTCTAATGCTTA 57.615 40.909 0.00 0.00 0.00 3.09
5313 7755 4.151335 CGTGATGTGCTCTAATGCTTATCC 59.849 45.833 0.00 0.00 0.00 2.59
5480 7922 3.825328 ACAGCTGACCTCATTTTTCTGT 58.175 40.909 23.35 0.00 0.00 3.41
5550 7992 0.035725 CAGCCAGAGTGAAGCCATCA 60.036 55.000 0.00 0.00 35.05 3.07
5688 8130 1.537202 GCTGGAATGTGGTTGTGACTC 59.463 52.381 0.00 0.00 0.00 3.36
5691 8133 1.512926 GAATGTGGTTGTGACTCGCT 58.487 50.000 0.00 0.00 0.00 4.93
5848 8296 4.657436 ACTTCGTAGTCATCATTCTCCC 57.343 45.455 0.00 0.00 0.00 4.30
6036 8485 3.394606 ACCTACCCAATCTGAAACTGTGT 59.605 43.478 0.00 0.00 0.00 3.72
6037 8486 3.753272 CCTACCCAATCTGAAACTGTGTG 59.247 47.826 0.00 0.00 0.00 3.82
6038 8487 2.586425 ACCCAATCTGAAACTGTGTGG 58.414 47.619 0.00 0.00 0.00 4.17
6039 8488 1.888512 CCCAATCTGAAACTGTGTGGG 59.111 52.381 0.00 0.00 38.42 4.61
6040 8489 1.270550 CCAATCTGAAACTGTGTGGGC 59.729 52.381 0.00 0.00 0.00 5.36
6041 8490 2.233271 CAATCTGAAACTGTGTGGGCT 58.767 47.619 0.00 0.00 0.00 5.19
6042 8491 3.411446 CAATCTGAAACTGTGTGGGCTA 58.589 45.455 0.00 0.00 0.00 3.93
6043 8492 4.012374 CAATCTGAAACTGTGTGGGCTAT 58.988 43.478 0.00 0.00 0.00 2.97
6044 8493 3.057969 TCTGAAACTGTGTGGGCTATG 57.942 47.619 0.00 0.00 0.00 2.23
6045 8494 2.371841 TCTGAAACTGTGTGGGCTATGT 59.628 45.455 0.00 0.00 0.00 2.29
6046 8495 2.744202 CTGAAACTGTGTGGGCTATGTC 59.256 50.000 0.00 0.00 0.00 3.06
6047 8496 2.105649 TGAAACTGTGTGGGCTATGTCA 59.894 45.455 0.00 0.00 0.00 3.58
6048 8497 3.244875 TGAAACTGTGTGGGCTATGTCAT 60.245 43.478 0.00 0.00 0.00 3.06
6049 8498 2.408271 ACTGTGTGGGCTATGTCATG 57.592 50.000 0.00 0.00 0.00 3.07
6050 8499 1.908619 ACTGTGTGGGCTATGTCATGA 59.091 47.619 0.00 0.00 0.00 3.07
6051 8500 2.507058 ACTGTGTGGGCTATGTCATGAT 59.493 45.455 0.00 0.00 0.00 2.45
6052 8501 3.054139 ACTGTGTGGGCTATGTCATGATT 60.054 43.478 0.00 0.00 0.00 2.57
6053 8502 3.281158 TGTGTGGGCTATGTCATGATTG 58.719 45.455 0.00 0.00 0.00 2.67
6054 8503 3.282021 GTGTGGGCTATGTCATGATTGT 58.718 45.455 0.00 0.00 0.00 2.71
6055 8504 3.696051 GTGTGGGCTATGTCATGATTGTT 59.304 43.478 0.00 0.00 0.00 2.83
6056 8505 4.881273 GTGTGGGCTATGTCATGATTGTTA 59.119 41.667 0.00 0.00 0.00 2.41
6057 8506 5.532406 GTGTGGGCTATGTCATGATTGTTAT 59.468 40.000 0.00 0.00 0.00 1.89
6058 8507 5.532032 TGTGGGCTATGTCATGATTGTTATG 59.468 40.000 0.00 0.00 0.00 1.90
6059 8508 4.520111 TGGGCTATGTCATGATTGTTATGC 59.480 41.667 0.00 0.00 0.00 3.14
6060 8509 4.520111 GGGCTATGTCATGATTGTTATGCA 59.480 41.667 0.00 0.00 0.00 3.96
6378 8857 7.495901 TCACATGCCTAAATTTGTTTCTTTCA 58.504 30.769 0.00 0.00 0.00 2.69
6551 9030 0.251698 TCCATGCTCCCATTGTGCAA 60.252 50.000 0.00 0.00 45.69 4.08
6552 9031 0.174845 CCATGCTCCCATTGTGCAAG 59.825 55.000 0.00 0.00 45.69 4.01
6553 9032 0.459585 CATGCTCCCATTGTGCAAGC 60.460 55.000 0.00 0.00 45.69 4.01
6554 9033 0.901114 ATGCTCCCATTGTGCAAGCA 60.901 50.000 9.26 9.26 45.69 3.91
6555 9034 1.114119 TGCTCCCATTGTGCAAGCAA 61.114 50.000 4.55 0.00 40.30 3.91
6556 9035 0.033781 GCTCCCATTGTGCAAGCAAA 59.966 50.000 0.00 0.00 33.65 3.68
6590 9080 3.713858 TGCAACTTTGTCATGAACTGG 57.286 42.857 0.00 0.00 0.00 4.00
6618 9108 0.929824 CGTGCTTGGCAACTTTGTCG 60.930 55.000 0.00 0.00 41.47 4.35
6630 9120 4.219033 CAACTTTGTCGTGTGCTTATTCC 58.781 43.478 0.00 0.00 0.00 3.01
6631 9121 3.740115 ACTTTGTCGTGTGCTTATTCCT 58.260 40.909 0.00 0.00 0.00 3.36
6632 9122 4.134563 ACTTTGTCGTGTGCTTATTCCTT 58.865 39.130 0.00 0.00 0.00 3.36
6633 9123 4.578928 ACTTTGTCGTGTGCTTATTCCTTT 59.421 37.500 0.00 0.00 0.00 3.11
6634 9124 5.067283 ACTTTGTCGTGTGCTTATTCCTTTT 59.933 36.000 0.00 0.00 0.00 2.27
6635 9125 6.261381 ACTTTGTCGTGTGCTTATTCCTTTTA 59.739 34.615 0.00 0.00 0.00 1.52
6636 9126 5.856126 TGTCGTGTGCTTATTCCTTTTAG 57.144 39.130 0.00 0.00 0.00 1.85
6637 9127 5.302360 TGTCGTGTGCTTATTCCTTTTAGT 58.698 37.500 0.00 0.00 0.00 2.24
6638 9128 5.761234 TGTCGTGTGCTTATTCCTTTTAGTT 59.239 36.000 0.00 0.00 0.00 2.24
6639 9129 6.077838 GTCGTGTGCTTATTCCTTTTAGTTG 58.922 40.000 0.00 0.00 0.00 3.16
6640 9130 4.851558 CGTGTGCTTATTCCTTTTAGTTGC 59.148 41.667 0.00 0.00 0.00 4.17
6641 9131 5.561919 CGTGTGCTTATTCCTTTTAGTTGCA 60.562 40.000 0.00 0.00 0.00 4.08
6642 9132 6.212955 GTGTGCTTATTCCTTTTAGTTGCAA 58.787 36.000 0.00 0.00 0.00 4.08
6643 9133 6.143919 GTGTGCTTATTCCTTTTAGTTGCAAC 59.856 38.462 22.17 22.17 0.00 4.17
6644 9134 6.040391 TGTGCTTATTCCTTTTAGTTGCAACT 59.960 34.615 32.97 32.97 42.91 3.16
6645 9135 6.923508 GTGCTTATTCCTTTTAGTTGCAACTT 59.076 34.615 35.20 19.78 40.37 2.66
6646 9136 7.438160 GTGCTTATTCCTTTTAGTTGCAACTTT 59.562 33.333 35.20 16.57 40.37 2.66
6647 9137 7.437862 TGCTTATTCCTTTTAGTTGCAACTTTG 59.562 33.333 35.20 21.24 40.37 2.77
6648 9138 7.438160 GCTTATTCCTTTTAGTTGCAACTTTGT 59.562 33.333 35.20 15.44 40.37 2.83
6649 9139 8.865590 TTATTCCTTTTAGTTGCAACTTTGTC 57.134 30.769 35.20 5.85 40.37 3.18
6650 9140 5.906113 TCCTTTTAGTTGCAACTTTGTCA 57.094 34.783 35.20 15.92 40.37 3.58
6651 9141 6.463995 TCCTTTTAGTTGCAACTTTGTCAT 57.536 33.333 35.20 13.57 40.37 3.06
6652 9142 6.272318 TCCTTTTAGTTGCAACTTTGTCATG 58.728 36.000 35.20 18.10 40.37 3.07
6653 9143 6.096141 TCCTTTTAGTTGCAACTTTGTCATGA 59.904 34.615 35.20 19.83 40.37 3.07
6654 9144 6.756074 CCTTTTAGTTGCAACTTTGTCATGAA 59.244 34.615 35.20 18.66 40.37 2.57
6655 9145 7.254084 CCTTTTAGTTGCAACTTTGTCATGAAC 60.254 37.037 35.20 2.51 40.37 3.18
6656 9146 4.989279 AGTTGCAACTTTGTCATGAACT 57.011 36.364 26.36 0.00 35.21 3.01
6657 9147 4.675510 AGTTGCAACTTTGTCATGAACTG 58.324 39.130 26.36 0.00 35.21 3.16
6658 9148 3.713858 TGCAACTTTGTCATGAACTGG 57.286 42.857 0.00 0.00 0.00 4.00
6659 9149 2.361757 TGCAACTTTGTCATGAACTGGG 59.638 45.455 0.00 0.00 0.00 4.45
6660 9150 2.622942 GCAACTTTGTCATGAACTGGGA 59.377 45.455 0.00 0.00 0.00 4.37
6661 9151 3.068024 GCAACTTTGTCATGAACTGGGAA 59.932 43.478 0.00 0.00 0.00 3.97
6662 9152 4.794003 GCAACTTTGTCATGAACTGGGAAG 60.794 45.833 0.00 0.00 0.00 3.46
6663 9153 3.490348 ACTTTGTCATGAACTGGGAAGG 58.510 45.455 0.00 0.00 0.00 3.46
6664 9154 2.584835 TTGTCATGAACTGGGAAGGG 57.415 50.000 0.00 0.00 0.00 3.95
6665 9155 1.741028 TGTCATGAACTGGGAAGGGA 58.259 50.000 0.00 0.00 0.00 4.20
6666 9156 2.278245 TGTCATGAACTGGGAAGGGAT 58.722 47.619 0.00 0.00 0.00 3.85
6667 9157 2.239654 TGTCATGAACTGGGAAGGGATC 59.760 50.000 0.00 0.00 0.00 3.36
6668 9158 1.486310 TCATGAACTGGGAAGGGATCG 59.514 52.381 0.00 0.00 0.00 3.69
6669 9159 1.210478 CATGAACTGGGAAGGGATCGT 59.790 52.381 0.00 0.00 0.00 3.73
6670 9160 0.613260 TGAACTGGGAAGGGATCGTG 59.387 55.000 0.00 0.00 0.00 4.35
6671 9161 0.744771 GAACTGGGAAGGGATCGTGC 60.745 60.000 0.00 0.00 0.00 5.34
6672 9162 1.201429 AACTGGGAAGGGATCGTGCT 61.201 55.000 0.00 0.00 0.00 4.40
6673 9163 1.201429 ACTGGGAAGGGATCGTGCTT 61.201 55.000 0.00 0.00 0.00 3.91
6674 9164 0.745845 CTGGGAAGGGATCGTGCTTG 60.746 60.000 0.00 0.00 0.00 4.01
6675 9165 1.452108 GGGAAGGGATCGTGCTTGG 60.452 63.158 0.00 0.00 0.00 3.61
6676 9166 2.115291 GGAAGGGATCGTGCTTGGC 61.115 63.158 0.00 0.00 0.00 4.52
6677 9167 1.377202 GAAGGGATCGTGCTTGGCA 60.377 57.895 0.00 0.00 35.60 4.92
6678 9168 0.960364 GAAGGGATCGTGCTTGGCAA 60.960 55.000 0.00 0.00 41.47 4.52
6679 9169 1.244019 AAGGGATCGTGCTTGGCAAC 61.244 55.000 0.00 0.00 41.47 4.17
6680 9170 1.675641 GGGATCGTGCTTGGCAACT 60.676 57.895 0.00 0.00 41.47 3.16
6681 9171 1.244019 GGGATCGTGCTTGGCAACTT 61.244 55.000 0.00 0.00 41.47 2.66
6682 9172 0.598065 GGATCGTGCTTGGCAACTTT 59.402 50.000 0.00 0.00 41.47 2.66
6683 9173 1.666888 GGATCGTGCTTGGCAACTTTG 60.667 52.381 0.00 0.00 41.47 2.77
6684 9174 1.001378 GATCGTGCTTGGCAACTTTGT 60.001 47.619 0.00 0.00 41.47 2.83
6685 9175 0.380378 TCGTGCTTGGCAACTTTGTC 59.620 50.000 0.00 0.00 41.47 3.18
6686 9176 0.929824 CGTGCTTGGCAACTTTGTCG 60.930 55.000 0.00 0.00 41.47 4.35
6687 9177 0.100503 GTGCTTGGCAACTTTGTCGT 59.899 50.000 0.00 0.00 41.47 4.34
6688 9178 0.100325 TGCTTGGCAACTTTGTCGTG 59.900 50.000 0.00 0.00 34.76 4.35
6689 9179 0.100503 GCTTGGCAACTTTGTCGTGT 59.899 50.000 0.00 0.00 35.00 4.49
6690 9180 1.826327 CTTGGCAACTTTGTCGTGTG 58.174 50.000 0.00 0.00 35.00 3.82
6691 9181 0.179150 TTGGCAACTTTGTCGTGTGC 60.179 50.000 0.00 0.00 35.00 4.57
6692 9182 1.029408 TGGCAACTTTGTCGTGTGCT 61.029 50.000 0.00 0.00 35.00 4.40
6693 9183 0.100503 GGCAACTTTGTCGTGTGCTT 59.899 50.000 0.00 0.00 0.00 3.91
6694 9184 1.332375 GGCAACTTTGTCGTGTGCTTA 59.668 47.619 0.00 0.00 0.00 3.09
6695 9185 2.031157 GGCAACTTTGTCGTGTGCTTAT 60.031 45.455 0.00 0.00 0.00 1.73
6696 9186 3.550030 GGCAACTTTGTCGTGTGCTTATT 60.550 43.478 0.00 0.00 0.00 1.40
6697 9187 3.664025 GCAACTTTGTCGTGTGCTTATTC 59.336 43.478 0.00 0.00 0.00 1.75
6726 9331 3.480470 CAGTTGCCTTATACCTGATGGG 58.520 50.000 0.00 0.00 41.89 4.00
6811 9416 4.771590 ATCTAACACTTGCATTGTGTGG 57.228 40.909 21.43 17.45 46.46 4.17
6985 10072 7.111247 TGTCCTGTGAACATTGAGAATTTTT 57.889 32.000 0.00 0.00 0.00 1.94
7022 10109 2.964343 TTTTTCGGGGGCATGGTAC 58.036 52.632 0.00 0.00 0.00 3.34
7057 10157 4.024893 GCATCACAGTATATTTCCCACACG 60.025 45.833 0.00 0.00 0.00 4.49
7059 10159 5.918426 TCACAGTATATTTCCCACACGTA 57.082 39.130 0.00 0.00 0.00 3.57
7074 10174 4.916249 CCACACGTAGTAACTGAAGAGTTC 59.084 45.833 0.00 0.00 41.61 3.01
7108 10208 9.030301 CAGTCGGAAAAACAATTACAGAATTTT 57.970 29.630 0.00 0.00 32.73 1.82
7131 10231 4.099113 TGTTTCAAATTGCCATGACACTCA 59.901 37.500 0.00 0.00 29.76 3.41
7190 10290 5.779529 AATGCACCATCTATTGAATCACC 57.220 39.130 0.00 0.00 0.00 4.02
7250 10350 0.319641 AGGGACTTCGAGAAACGCAC 60.320 55.000 0.00 0.00 42.26 5.34
7251 10351 0.599204 GGGACTTCGAGAAACGCACA 60.599 55.000 0.00 0.00 42.26 4.57
7328 10428 2.983879 CGATGACCAAAGGCCCCCT 61.984 63.158 0.00 0.00 33.87 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.965119 ATCGCACAATCCTTTAACTTCC 57.035 40.909 0.00 0.00 0.00 3.46
1 2 6.535508 AGAGTATCGCACAATCCTTTAACTTC 59.464 38.462 0.00 0.00 42.67 3.01
3 4 5.978814 AGAGTATCGCACAATCCTTTAACT 58.021 37.500 0.00 0.00 42.67 2.24
6 7 6.710597 AGTAGAGTATCGCACAATCCTTTA 57.289 37.500 0.00 0.00 42.67 1.85
7 8 5.599999 AGTAGAGTATCGCACAATCCTTT 57.400 39.130 0.00 0.00 42.67 3.11
8 9 5.593095 TGTAGTAGAGTATCGCACAATCCTT 59.407 40.000 0.00 0.00 42.67 3.36
9 10 5.131067 TGTAGTAGAGTATCGCACAATCCT 58.869 41.667 0.00 0.00 42.67 3.24
10 11 5.434352 TGTAGTAGAGTATCGCACAATCC 57.566 43.478 0.00 0.00 42.67 3.01
11 12 5.915758 CCTTGTAGTAGAGTATCGCACAATC 59.084 44.000 0.00 0.00 42.67 2.67
19 20 8.529476 TCTTTGGAAACCTTGTAGTAGAGTATC 58.471 37.037 0.00 0.00 0.00 2.24
24 25 7.830201 TGTTTTCTTTGGAAACCTTGTAGTAGA 59.170 33.333 0.00 0.00 40.63 2.59
26 27 7.941431 TGTTTTCTTTGGAAACCTTGTAGTA 57.059 32.000 0.00 0.00 40.63 1.82
60 62 5.239306 TCACGATTGAGCATTTTCTTTGACT 59.761 36.000 0.00 0.00 0.00 3.41
62 64 5.687770 TCACGATTGAGCATTTTCTTTGA 57.312 34.783 0.00 0.00 0.00 2.69
80 82 0.603707 ATTGCTGGTGTGTCCTCACG 60.604 55.000 0.00 0.00 46.49 4.35
82 84 3.719268 ATTATTGCTGGTGTGTCCTCA 57.281 42.857 0.00 0.00 37.07 3.86
83 85 4.513442 TGTATTATTGCTGGTGTGTCCTC 58.487 43.478 0.00 0.00 37.07 3.71
121 124 6.995364 TCATGATTTGGCTGAGAAAATGAAA 58.005 32.000 0.00 0.00 0.00 2.69
133 136 9.158233 CTGACAATTTAAATTCATGATTTGGCT 57.842 29.630 10.53 0.00 38.40 4.75
156 159 3.392882 CTTGTGCCATATGCGTATCTGA 58.607 45.455 0.00 0.00 45.60 3.27
164 167 1.473258 TTGGACCTTGTGCCATATGC 58.527 50.000 0.00 0.00 41.77 3.14
171 174 0.463620 TTGCCTTTTGGACCTTGTGC 59.536 50.000 0.00 0.00 44.07 4.57
188 191 4.580167 TGGGAGAGAACACAACTTGAATTG 59.420 41.667 0.00 0.00 35.59 2.32
191 194 3.924114 TGGGAGAGAACACAACTTGAA 57.076 42.857 0.00 0.00 0.00 2.69
192 195 3.554960 CGATGGGAGAGAACACAACTTGA 60.555 47.826 0.00 0.00 0.00 3.02
200 203 2.107366 TGTATGCGATGGGAGAGAACA 58.893 47.619 0.00 0.00 0.00 3.18
209 212 3.694734 GTTTCAACCATGTATGCGATGG 58.305 45.455 9.56 9.56 45.26 3.51
235 238 7.023575 GGTGTAGATTCATGTTTAAAGCACTG 58.976 38.462 0.00 0.00 0.00 3.66
238 241 5.391523 GCGGTGTAGATTCATGTTTAAAGCA 60.392 40.000 0.00 0.00 0.00 3.91
248 251 2.287915 GCATTTCGCGGTGTAGATTCAT 59.712 45.455 6.13 0.00 0.00 2.57
252 255 1.006832 GTGCATTTCGCGGTGTAGAT 58.993 50.000 6.13 0.00 46.97 1.98
254 257 0.726827 ATGTGCATTTCGCGGTGTAG 59.273 50.000 6.13 0.00 46.97 2.74
268 271 2.639839 ACCCCTATCCTATGACATGTGC 59.360 50.000 1.15 0.00 0.00 4.57
280 283 0.036875 GTGCATGCCTACCCCTATCC 59.963 60.000 16.68 0.00 0.00 2.59
287 292 1.379044 AGCTTGGTGCATGCCTACC 60.379 57.895 18.07 18.07 45.94 3.18
320 325 1.899437 TTGCTCGCTACTCCCCCAAG 61.899 60.000 0.00 0.00 0.00 3.61
322 327 1.271840 ATTTGCTCGCTACTCCCCCA 61.272 55.000 0.00 0.00 0.00 4.96
323 328 0.815615 CATTTGCTCGCTACTCCCCC 60.816 60.000 0.00 0.00 0.00 5.40
341 346 5.393411 AATGTAGCTACATGCAACGAAGCA 61.393 41.667 34.18 7.18 45.55 3.91
359 364 5.813672 CCTTAAAGCTACAACGGCTAATGTA 59.186 40.000 0.00 0.00 39.30 2.29
360 365 4.634443 CCTTAAAGCTACAACGGCTAATGT 59.366 41.667 0.00 0.00 39.30 2.71
361 366 4.035208 CCCTTAAAGCTACAACGGCTAATG 59.965 45.833 0.00 0.00 39.30 1.90
362 367 4.196971 CCCTTAAAGCTACAACGGCTAAT 58.803 43.478 0.00 0.00 39.30 1.73
363 368 3.008266 ACCCTTAAAGCTACAACGGCTAA 59.992 43.478 0.00 0.00 39.30 3.09
364 369 2.568509 ACCCTTAAAGCTACAACGGCTA 59.431 45.455 0.00 0.00 39.30 3.93
365 370 1.350019 ACCCTTAAAGCTACAACGGCT 59.650 47.619 0.00 0.00 42.31 5.52
366 371 1.467342 CACCCTTAAAGCTACAACGGC 59.533 52.381 0.00 0.00 0.00 5.68
367 372 2.081462 CCACCCTTAAAGCTACAACGG 58.919 52.381 0.00 0.00 0.00 4.44
368 373 1.467342 GCCACCCTTAAAGCTACAACG 59.533 52.381 0.00 0.00 0.00 4.10
369 374 1.816835 GGCCACCCTTAAAGCTACAAC 59.183 52.381 0.00 0.00 0.00 3.32
375 380 1.682344 CCCAGGCCACCCTTAAAGC 60.682 63.158 5.01 0.00 40.33 3.51
425 430 0.387622 TCGTCGAGTTAAGCCGTTGG 60.388 55.000 0.00 0.00 0.00 3.77
427 432 0.877071 TCTCGTCGAGTTAAGCCGTT 59.123 50.000 21.15 0.00 0.00 4.44
455 460 3.010027 TCCCAGCTTATCCATGTGTTTGA 59.990 43.478 0.00 0.00 0.00 2.69
467 472 4.023980 GTTTTAAAGGGCTCCCAGCTTAT 58.976 43.478 7.82 0.00 41.99 1.73
469 474 2.248248 GTTTTAAAGGGCTCCCAGCTT 58.752 47.619 7.82 0.44 41.99 3.74
474 479 4.682778 AAACTTGTTTTAAAGGGCTCCC 57.317 40.909 0.00 0.00 0.00 4.30
574 579 6.693315 TTGAAAAACAACCAACCAAACAAA 57.307 29.167 0.00 0.00 33.18 2.83
576 581 6.318900 ACTTTTGAAAAACAACCAACCAAACA 59.681 30.769 0.00 0.00 38.29 2.83
577 582 6.730175 ACTTTTGAAAAACAACCAACCAAAC 58.270 32.000 0.00 0.00 38.29 2.93
578 583 6.944234 ACTTTTGAAAAACAACCAACCAAA 57.056 29.167 0.00 0.00 38.29 3.28
579 584 6.944234 AACTTTTGAAAAACAACCAACCAA 57.056 29.167 0.00 0.00 38.29 3.67
580 585 7.119846 CCATAACTTTTGAAAAACAACCAACCA 59.880 33.333 0.00 0.00 38.29 3.67
581 586 7.468441 CCATAACTTTTGAAAAACAACCAACC 58.532 34.615 0.00 0.00 38.29 3.77
583 588 6.183360 CGCCATAACTTTTGAAAAACAACCAA 60.183 34.615 0.00 0.00 38.29 3.67
630 665 3.181445 TGGTTAGGCTCAGCTCTTTCAAA 60.181 43.478 0.00 0.00 0.00 2.69
794 833 1.734137 CGTCGAGATCGGGGAATGT 59.266 57.895 1.91 0.00 40.29 2.71
827 876 1.141234 GTCGGCTAACGGAAGAGGG 59.859 63.158 0.00 0.00 44.45 4.30
888 963 3.197790 CGGAATGTGCCTGCGGAG 61.198 66.667 0.00 0.00 0.00 4.63
889 964 3.545124 AACGGAATGTGCCTGCGGA 62.545 57.895 0.00 0.00 31.14 5.54
907 982 3.507924 GCATGGACGGAATGCGCA 61.508 61.111 14.96 14.96 40.91 6.09
970 1045 2.125912 AGATGCGTGTGAGGCGAC 60.126 61.111 0.00 0.00 0.00 5.19
987 1062 4.314440 GAGGTGGCGCTGTGGTGA 62.314 66.667 7.64 0.00 0.00 4.02
995 1070 4.475135 GGAAGGGAGAGGTGGCGC 62.475 72.222 0.00 0.00 0.00 6.53
1047 1122 4.168291 GCTGCCTCGGGGGAAGAG 62.168 72.222 5.91 0.00 43.76 2.85
1049 1124 4.479993 CTGCTGCCTCGGGGGAAG 62.480 72.222 1.90 0.00 43.88 3.46
1248 1364 2.420722 GTCACCGACAAAACAAACCAGA 59.579 45.455 0.00 0.00 32.09 3.86
1252 1368 2.810028 TCGTCACCGACAAAACAAAC 57.190 45.000 0.00 0.00 38.40 2.93
1388 1513 1.959226 CCGTCAGAAACCACCCGTG 60.959 63.158 0.00 0.00 0.00 4.94
1553 1897 3.254060 ACTGAACATTCGAATCGACCAG 58.746 45.455 7.92 14.41 34.89 4.00
1592 3121 0.603707 ACACACAGGATCCAGCGTTG 60.604 55.000 15.82 5.38 0.00 4.10
1604 3133 1.077123 GAGATCTGCAGCACACACAG 58.923 55.000 9.47 0.00 0.00 3.66
1844 3380 2.292267 AGAAACCAGCATATCCAAGCG 58.708 47.619 0.00 0.00 35.48 4.68
1850 3386 6.293845 GGATCACATGAAGAAACCAGCATATC 60.294 42.308 0.00 0.00 0.00 1.63
1867 3408 3.851458 TCATAAGCAGCAGGATCACAT 57.149 42.857 0.00 0.00 0.00 3.21
2142 3691 0.526954 GGTGACCATACTACGCCACG 60.527 60.000 0.00 0.00 34.76 4.94
2169 3718 9.965824 AGTGACAAGTGGAAATAAAATTAACAG 57.034 29.630 0.00 0.00 0.00 3.16
2180 3729 5.940470 GTGGATCTAAGTGACAAGTGGAAAT 59.060 40.000 0.00 0.00 0.00 2.17
2188 3737 2.906389 AGCAGGTGGATCTAAGTGACAA 59.094 45.455 0.00 0.00 0.00 3.18
2222 3773 6.679327 GGAGGATTCCACAAACATAAGTAC 57.321 41.667 5.29 0.00 43.45 2.73
2239 3790 4.476113 TCCAGATCATGAAGTTTGGAGGAT 59.524 41.667 13.61 0.00 31.50 3.24
2249 3803 2.723322 TGCCCTTCCAGATCATGAAG 57.277 50.000 14.22 14.22 38.14 3.02
2294 3853 0.677842 ACGTACGGAGCCTTGAAAGT 59.322 50.000 21.06 0.00 0.00 2.66
2320 3879 2.490903 CCACAGCAAATCAAGAGAAGGG 59.509 50.000 0.00 0.00 0.00 3.95
2334 3893 5.780282 ACCTATATGTATTAGAGCCACAGCA 59.220 40.000 0.00 0.00 43.56 4.41
2344 3903 7.626664 GCAGACAGGTCGACCTATATGTATTAG 60.627 44.444 35.80 21.17 46.65 1.73
2399 3958 5.762825 ACATGAGTAGGCAATAGCAATTG 57.237 39.130 0.00 0.00 44.53 2.32
2437 3996 6.701400 GCCACAAGCCCATAGTAATAAAAATG 59.299 38.462 0.00 0.00 34.35 2.32
2439 3998 5.717178 TGCCACAAGCCCATAGTAATAAAAA 59.283 36.000 0.00 0.00 42.71 1.94
2440 3999 5.265191 TGCCACAAGCCCATAGTAATAAAA 58.735 37.500 0.00 0.00 42.71 1.52
2532 4206 8.894768 ATTCCACAGACAGAACTATAATAAGC 57.105 34.615 0.00 0.00 0.00 3.09
2600 4274 3.200165 AGGGAGTATAGAAAGTTGCCCAC 59.800 47.826 0.00 0.00 36.79 4.61
2601 4275 3.460825 AGGGAGTATAGAAAGTTGCCCA 58.539 45.455 0.00 0.00 36.79 5.36
2668 4342 9.593134 GAGCTAATCAAGAGAAAGAATAGAACA 57.407 33.333 0.00 0.00 0.00 3.18
2674 4348 5.821995 GCCAGAGCTAATCAAGAGAAAGAAT 59.178 40.000 0.00 0.00 35.50 2.40
2788 4462 8.651588 GTCAGAGTAATAAAGATGTCACAACAG 58.348 37.037 0.00 0.00 39.20 3.16
3077 5381 2.268298 CATAGTCTACCACAACGCCAC 58.732 52.381 0.00 0.00 0.00 5.01
3185 5489 7.175104 AGATGGTAGGACTTAAAAATGAAGCA 58.825 34.615 0.00 0.00 0.00 3.91
3201 5505 4.696479 ATTACCTGCTGAAGATGGTAGG 57.304 45.455 0.00 0.00 40.38 3.18
3208 5512 6.098266 TGAGCTATGTTATTACCTGCTGAAGA 59.902 38.462 0.00 0.00 0.00 2.87
3323 5627 5.798132 TCAAGTCAGTGCACAGAAGATATT 58.202 37.500 21.04 7.67 0.00 1.28
3328 5632 3.136763 ACATCAAGTCAGTGCACAGAAG 58.863 45.455 21.04 10.11 0.00 2.85
3682 5987 8.450578 AGAGAAACATGTGTCAGTTAATTGAA 57.549 30.769 18.32 0.00 0.00 2.69
3863 6168 7.483307 TCAATAAAGCATAAAGGCAAAGCTAG 58.517 34.615 0.00 0.00 34.66 3.42
3933 6238 8.497554 CCTTCACATTCAAAAACCACAATATTG 58.502 33.333 14.01 14.01 0.00 1.90
4059 6364 3.550678 GTCAAACTAATCCGTTCGCCTAG 59.449 47.826 0.00 0.00 0.00 3.02
4150 6517 4.313282 ACATGCTATGAAGATGTGGATCG 58.687 43.478 0.00 0.00 33.34 3.69
4386 6823 7.498900 GGTCATATTTGGATACTGATGTCAACA 59.501 37.037 0.00 0.00 37.61 3.33
4432 6869 7.654022 ACACTAAAAAGGTGAAAAGGATCAA 57.346 32.000 0.00 0.00 38.01 2.57
4437 6874 9.083080 CAAAGTAACACTAAAAAGGTGAAAAGG 57.917 33.333 0.00 0.00 38.01 3.11
4479 6916 9.832445 GGTTTAATATCTCTGTGATGGTTAAGA 57.168 33.333 2.63 0.00 36.65 2.10
4499 6936 5.308497 TCTGGTTAGTGATCAGGTGGTTTAA 59.692 40.000 0.00 0.00 0.00 1.52
4600 7037 5.424573 AGGAAATTACTAGTGTACCTGGACC 59.575 44.000 5.39 0.00 0.00 4.46
4615 7052 4.725790 ATGCAAGCAAGGAGGAAATTAC 57.274 40.909 0.00 0.00 0.00 1.89
4618 7055 6.040166 CAGTAATATGCAAGCAAGGAGGAAAT 59.960 38.462 0.00 0.00 0.00 2.17
4628 7065 6.757897 AAAAGCTACAGTAATATGCAAGCA 57.242 33.333 0.00 0.00 35.82 3.91
4673 7110 7.778083 ACACTACATCCATTACTTTCGATGTA 58.222 34.615 8.12 8.12 42.61 2.29
4678 7115 9.702726 CAAATTACACTACATCCATTACTTTCG 57.297 33.333 0.00 0.00 0.00 3.46
4690 7127 7.801315 CGTTGCAACTTACAAATTACACTACAT 59.199 33.333 26.09 0.00 0.00 2.29
4693 7130 7.249186 ACGTTGCAACTTACAAATTACACTA 57.751 32.000 26.09 0.00 0.00 2.74
4705 7142 7.259161 AGGTTCAAAATTAACGTTGCAACTTA 58.741 30.769 26.09 19.07 0.00 2.24
4716 7153 9.906660 TTCATGTCATGTAGGTTCAAAATTAAC 57.093 29.630 12.54 0.00 0.00 2.01
4721 7158 7.757941 TCATTCATGTCATGTAGGTTCAAAA 57.242 32.000 12.54 0.00 0.00 2.44
4766 7203 2.977914 TCTCCAAGAGCTGCATGTAAC 58.022 47.619 1.02 0.00 0.00 2.50
4884 7321 6.039270 TCACCTGAACAAATACACAAAGGAAG 59.961 38.462 0.00 0.00 0.00 3.46
4977 7416 7.164803 ACAGAGAGTTCTTAATCAAAGGAAGG 58.835 38.462 0.00 0.00 35.75 3.46
5310 7752 7.560796 TTCTCAAAGAACTAGAAGGAAGGAT 57.439 36.000 0.00 0.00 0.00 3.24
5313 7755 6.708054 TGCTTTCTCAAAGAACTAGAAGGAAG 59.292 38.462 0.00 0.00 41.02 3.46
5480 7922 4.417183 AGGTATAGAGATCAGACTGTGGGA 59.583 45.833 1.59 0.00 0.00 4.37
5550 7992 3.308401 ACCAAGCTCAATTGAAGGGTTT 58.692 40.909 9.88 0.00 31.55 3.27
5701 8143 5.734720 TGGCAACCTACAATTTGTCAAAAA 58.265 33.333 5.07 0.00 34.46 1.94
5702 8144 5.344743 TGGCAACCTACAATTTGTCAAAA 57.655 34.783 5.07 0.00 34.46 2.44
5703 8145 5.105146 AGTTGGCAACCTACAATTTGTCAAA 60.105 36.000 25.81 0.00 46.03 2.69
5848 8296 2.806244 ACAGTAACTAACCGCAGCAAAG 59.194 45.455 0.00 0.00 0.00 2.77
6036 8485 4.520111 GCATAACAATCATGACATAGCCCA 59.480 41.667 0.00 0.00 0.00 5.36
6037 8486 4.520111 TGCATAACAATCATGACATAGCCC 59.480 41.667 0.00 0.00 0.00 5.19
6038 8487 5.694231 TGCATAACAATCATGACATAGCC 57.306 39.130 0.00 0.00 0.00 3.93
6039 8488 6.090783 CCATGCATAACAATCATGACATAGC 58.909 40.000 0.00 0.00 39.80 2.97
6040 8489 7.174426 AGACCATGCATAACAATCATGACATAG 59.826 37.037 0.00 0.00 39.80 2.23
6041 8490 6.999871 AGACCATGCATAACAATCATGACATA 59.000 34.615 0.00 0.00 39.80 2.29
6042 8491 5.831525 AGACCATGCATAACAATCATGACAT 59.168 36.000 0.00 0.00 39.80 3.06
6043 8492 5.066764 CAGACCATGCATAACAATCATGACA 59.933 40.000 0.00 0.00 39.80 3.58
6044 8493 5.297527 TCAGACCATGCATAACAATCATGAC 59.702 40.000 0.00 0.00 39.80 3.06
6045 8494 5.297527 GTCAGACCATGCATAACAATCATGA 59.702 40.000 0.00 0.00 39.80 3.07
6046 8495 5.298527 AGTCAGACCATGCATAACAATCATG 59.701 40.000 0.00 0.00 37.81 3.07
6047 8496 5.298527 CAGTCAGACCATGCATAACAATCAT 59.701 40.000 0.00 0.00 0.00 2.45
6048 8497 4.637091 CAGTCAGACCATGCATAACAATCA 59.363 41.667 0.00 0.00 0.00 2.57
6049 8498 4.877823 TCAGTCAGACCATGCATAACAATC 59.122 41.667 0.00 0.00 0.00 2.67
6050 8499 4.637534 GTCAGTCAGACCATGCATAACAAT 59.362 41.667 0.00 0.00 41.56 2.71
6051 8500 4.002982 GTCAGTCAGACCATGCATAACAA 58.997 43.478 0.00 0.00 41.56 2.83
6052 8501 3.599343 GTCAGTCAGACCATGCATAACA 58.401 45.455 0.00 0.00 41.56 2.41
6269 8745 4.645535 ACAAGTGTAGATGAACAGCACAT 58.354 39.130 0.00 0.00 32.99 3.21
6490 8969 6.934645 TCCGTGAAAAAGATTGTCAATAGACT 59.065 34.615 0.00 0.00 45.20 3.24
6508 8987 3.490078 GCAAACAATTCAGGTTCCGTGAA 60.490 43.478 2.31 2.31 41.37 3.18
6511 8990 2.306847 AGCAAACAATTCAGGTTCCGT 58.693 42.857 0.00 0.00 0.00 4.69
6562 9041 6.822667 TCATGACAAAGTTGCAACTATGAT 57.177 33.333 31.31 16.66 38.57 2.45
6590 9080 2.115291 GCCAAGCACGATCCCTTCC 61.115 63.158 0.00 0.00 0.00 3.46
6618 9108 5.768317 TGCAACTAAAAGGAATAAGCACAC 58.232 37.500 0.00 0.00 0.00 3.82
6630 9120 7.489113 AGTTCATGACAAAGTTGCAACTAAAAG 59.511 33.333 31.31 21.70 38.57 2.27
6631 9121 7.275341 CAGTTCATGACAAAGTTGCAACTAAAA 59.725 33.333 31.31 15.97 38.57 1.52
6632 9122 6.751425 CAGTTCATGACAAAGTTGCAACTAAA 59.249 34.615 31.31 15.63 38.57 1.85
6633 9123 6.264832 CAGTTCATGACAAAGTTGCAACTAA 58.735 36.000 31.31 16.62 38.57 2.24
6634 9124 5.221028 CCAGTTCATGACAAAGTTGCAACTA 60.221 40.000 31.31 16.55 38.57 2.24
6635 9125 4.440525 CCAGTTCATGACAAAGTTGCAACT 60.441 41.667 26.36 26.36 42.04 3.16
6636 9126 3.798337 CCAGTTCATGACAAAGTTGCAAC 59.202 43.478 22.17 22.17 0.00 4.17
6637 9127 3.181477 CCCAGTTCATGACAAAGTTGCAA 60.181 43.478 0.00 0.00 0.00 4.08
6638 9128 2.361757 CCCAGTTCATGACAAAGTTGCA 59.638 45.455 0.00 0.00 0.00 4.08
6639 9129 2.622942 TCCCAGTTCATGACAAAGTTGC 59.377 45.455 0.00 0.00 0.00 4.17
6640 9130 4.261741 CCTTCCCAGTTCATGACAAAGTTG 60.262 45.833 0.00 0.00 0.00 3.16
6641 9131 3.891366 CCTTCCCAGTTCATGACAAAGTT 59.109 43.478 0.00 0.00 0.00 2.66
6642 9132 3.490348 CCTTCCCAGTTCATGACAAAGT 58.510 45.455 0.00 0.00 0.00 2.66
6643 9133 2.821969 CCCTTCCCAGTTCATGACAAAG 59.178 50.000 0.00 0.00 0.00 2.77
6644 9134 2.445145 TCCCTTCCCAGTTCATGACAAA 59.555 45.455 0.00 0.00 0.00 2.83
6645 9135 2.061848 TCCCTTCCCAGTTCATGACAA 58.938 47.619 0.00 0.00 0.00 3.18
6646 9136 1.741028 TCCCTTCCCAGTTCATGACA 58.259 50.000 0.00 0.00 0.00 3.58
6647 9137 2.743183 CGATCCCTTCCCAGTTCATGAC 60.743 54.545 0.00 0.00 0.00 3.06
6648 9138 1.486310 CGATCCCTTCCCAGTTCATGA 59.514 52.381 0.00 0.00 0.00 3.07
6649 9139 1.210478 ACGATCCCTTCCCAGTTCATG 59.790 52.381 0.00 0.00 0.00 3.07
6650 9140 1.210478 CACGATCCCTTCCCAGTTCAT 59.790 52.381 0.00 0.00 0.00 2.57
6651 9141 0.613260 CACGATCCCTTCCCAGTTCA 59.387 55.000 0.00 0.00 0.00 3.18
6652 9142 0.744771 GCACGATCCCTTCCCAGTTC 60.745 60.000 0.00 0.00 0.00 3.01
6653 9143 1.201429 AGCACGATCCCTTCCCAGTT 61.201 55.000 0.00 0.00 0.00 3.16
6654 9144 1.201429 AAGCACGATCCCTTCCCAGT 61.201 55.000 0.00 0.00 0.00 4.00
6655 9145 0.745845 CAAGCACGATCCCTTCCCAG 60.746 60.000 0.00 0.00 0.00 4.45
6656 9146 1.299648 CAAGCACGATCCCTTCCCA 59.700 57.895 0.00 0.00 0.00 4.37
6657 9147 1.452108 CCAAGCACGATCCCTTCCC 60.452 63.158 0.00 0.00 0.00 3.97
6658 9148 2.115291 GCCAAGCACGATCCCTTCC 61.115 63.158 0.00 0.00 0.00 3.46
6659 9149 0.960364 TTGCCAAGCACGATCCCTTC 60.960 55.000 0.00 0.00 38.71 3.46
6660 9150 1.074775 TTGCCAAGCACGATCCCTT 59.925 52.632 0.00 0.00 38.71 3.95
6661 9151 1.675641 GTTGCCAAGCACGATCCCT 60.676 57.895 0.00 0.00 38.71 4.20
6662 9152 1.244019 AAGTTGCCAAGCACGATCCC 61.244 55.000 0.00 0.00 38.71 3.85
6663 9153 0.598065 AAAGTTGCCAAGCACGATCC 59.402 50.000 0.00 0.00 38.71 3.36
6664 9154 1.001378 ACAAAGTTGCCAAGCACGATC 60.001 47.619 0.00 0.00 38.71 3.69
6665 9155 1.001378 GACAAAGTTGCCAAGCACGAT 60.001 47.619 0.00 0.00 38.71 3.73
6666 9156 0.380378 GACAAAGTTGCCAAGCACGA 59.620 50.000 0.00 0.00 38.71 4.35
6667 9157 0.929824 CGACAAAGTTGCCAAGCACG 60.930 55.000 0.00 0.00 38.71 5.34
6668 9158 0.100503 ACGACAAAGTTGCCAAGCAC 59.899 50.000 0.00 0.00 38.71 4.40
6669 9159 0.100325 CACGACAAAGTTGCCAAGCA 59.900 50.000 0.00 0.00 36.47 3.91
6670 9160 0.100503 ACACGACAAAGTTGCCAAGC 59.899 50.000 0.00 0.00 0.00 4.01
6671 9161 1.826327 CACACGACAAAGTTGCCAAG 58.174 50.000 0.00 0.00 0.00 3.61
6672 9162 0.179150 GCACACGACAAAGTTGCCAA 60.179 50.000 0.00 0.00 0.00 4.52
6673 9163 1.029408 AGCACACGACAAAGTTGCCA 61.029 50.000 0.00 0.00 32.55 4.92
6674 9164 0.100503 AAGCACACGACAAAGTTGCC 59.899 50.000 0.00 0.00 32.55 4.52
6675 9165 2.748461 TAAGCACACGACAAAGTTGC 57.252 45.000 0.00 0.00 0.00 4.17
6676 9166 4.024048 AGGAATAAGCACACGACAAAGTTG 60.024 41.667 0.00 0.00 0.00 3.16
6677 9167 4.134563 AGGAATAAGCACACGACAAAGTT 58.865 39.130 0.00 0.00 0.00 2.66
6678 9168 3.740115 AGGAATAAGCACACGACAAAGT 58.260 40.909 0.00 0.00 0.00 2.66
6679 9169 4.749245 AAGGAATAAGCACACGACAAAG 57.251 40.909 0.00 0.00 0.00 2.77
6680 9170 5.506649 GGAAAAGGAATAAGCACACGACAAA 60.507 40.000 0.00 0.00 0.00 2.83
6681 9171 4.023536 GGAAAAGGAATAAGCACACGACAA 60.024 41.667 0.00 0.00 0.00 3.18
6682 9172 3.500680 GGAAAAGGAATAAGCACACGACA 59.499 43.478 0.00 0.00 0.00 4.35
6683 9173 3.119955 GGGAAAAGGAATAAGCACACGAC 60.120 47.826 0.00 0.00 0.00 4.34
6684 9174 3.078837 GGGAAAAGGAATAAGCACACGA 58.921 45.455 0.00 0.00 0.00 4.35
6685 9175 2.817258 TGGGAAAAGGAATAAGCACACG 59.183 45.455 0.00 0.00 0.00 4.49
6686 9176 3.826729 ACTGGGAAAAGGAATAAGCACAC 59.173 43.478 0.00 0.00 0.00 3.82
6687 9177 4.112634 ACTGGGAAAAGGAATAAGCACA 57.887 40.909 0.00 0.00 0.00 4.57
6688 9178 4.809673 CAACTGGGAAAAGGAATAAGCAC 58.190 43.478 0.00 0.00 0.00 4.40
6689 9179 3.258123 GCAACTGGGAAAAGGAATAAGCA 59.742 43.478 0.00 0.00 0.00 3.91
6690 9180 3.368427 GGCAACTGGGAAAAGGAATAAGC 60.368 47.826 0.00 0.00 0.00 3.09
6691 9181 4.456280 GGCAACTGGGAAAAGGAATAAG 57.544 45.455 0.00 0.00 0.00 1.73
6726 9331 3.131577 TGATCGACACCTATACCAACCAC 59.868 47.826 0.00 0.00 0.00 4.16
6783 9388 5.622914 ACAATGCAAGTGTTAGATTGCCATC 60.623 40.000 7.38 0.00 46.63 3.51
6785 9390 3.573538 ACAATGCAAGTGTTAGATTGCCA 59.426 39.130 7.38 0.00 46.63 4.92
6793 9398 3.814625 TCTCCACACAATGCAAGTGTTA 58.185 40.909 21.42 13.61 46.63 2.41
6917 9562 9.850628 CAGATCATCTATGTGTTTCAAATTTGT 57.149 29.630 17.47 0.00 0.00 2.83
6960 10047 6.713762 AAATTCTCAATGTTCACAGGACAA 57.286 33.333 0.00 0.00 0.00 3.18
7011 10098 2.729194 TGTAACATTGTACCATGCCCC 58.271 47.619 6.84 0.00 0.00 5.80
7014 10101 3.130164 TGCCATGTAACATTGTACCATGC 59.870 43.478 17.10 14.08 0.00 4.06
7015 10102 4.979943 TGCCATGTAACATTGTACCATG 57.020 40.909 16.18 16.18 0.00 3.66
7016 10103 5.067674 GTGATGCCATGTAACATTGTACCAT 59.932 40.000 0.00 0.00 0.00 3.55
7017 10104 4.397730 GTGATGCCATGTAACATTGTACCA 59.602 41.667 0.00 0.00 0.00 3.25
7018 10105 4.397730 TGTGATGCCATGTAACATTGTACC 59.602 41.667 0.00 0.00 0.00 3.34
7019 10106 5.123820 ACTGTGATGCCATGTAACATTGTAC 59.876 40.000 0.00 0.00 0.00 2.90
7020 10107 5.252547 ACTGTGATGCCATGTAACATTGTA 58.747 37.500 0.00 0.00 0.00 2.41
7021 10108 4.081406 ACTGTGATGCCATGTAACATTGT 58.919 39.130 0.00 0.00 0.00 2.71
7022 10109 4.707030 ACTGTGATGCCATGTAACATTG 57.293 40.909 0.00 0.00 0.00 2.82
7023 10110 8.696043 AATATACTGTGATGCCATGTAACATT 57.304 30.769 0.00 0.00 0.00 2.71
7027 10114 6.714810 GGGAAATATACTGTGATGCCATGTAA 59.285 38.462 0.00 0.00 0.00 2.41
7035 10135 5.116180 ACGTGTGGGAAATATACTGTGATG 58.884 41.667 0.00 0.00 0.00 3.07
7057 10157 4.082895 TCCTGCGAACTCTTCAGTTACTAC 60.083 45.833 0.00 0.00 43.37 2.73
7059 10159 2.891580 TCCTGCGAACTCTTCAGTTACT 59.108 45.455 0.00 0.00 43.37 2.24
7074 10174 0.941542 TTTTTCCGACTGTTCCTGCG 59.058 50.000 0.00 0.00 0.00 5.18
7108 10208 4.099113 TGAGTGTCATGGCAATTTGAAACA 59.901 37.500 0.00 0.00 33.35 2.83
7131 10231 4.261447 GCTTACCCAAAAGATTTGTGTCGT 60.261 41.667 2.53 0.00 0.00 4.34
7247 10347 3.911868 TGCTGGAATTGTAAATGTGTGC 58.088 40.909 0.00 0.00 0.00 4.57
7250 10350 4.171005 CTGCTGCTGGAATTGTAAATGTG 58.829 43.478 0.00 0.00 0.00 3.21
7251 10351 3.367703 GCTGCTGCTGGAATTGTAAATGT 60.368 43.478 8.53 0.00 36.03 2.71
7328 10428 2.042464 GATAGAGCTGGTCATGGGTGA 58.958 52.381 9.78 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.