Multiple sequence alignment - TraesCS5D01G360900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5D01G360900
chr5D
100.000
2312
0
0
1
2312
440376441
440374130
0.000000e+00
4270
1
TraesCS5D01G360900
chr5D
85.897
702
68
24
630
1316
436824460
436823775
0.000000e+00
719
2
TraesCS5D01G360900
chr5D
85.324
695
78
16
630
1314
436349175
436349855
0.000000e+00
697
3
TraesCS5D01G360900
chr5A
91.827
881
40
20
585
1462
556534720
556533869
0.000000e+00
1199
4
TraesCS5D01G360900
chr5A
86.246
698
68
23
635
1316
552078817
552078132
0.000000e+00
732
5
TraesCS5D01G360900
chr5A
90.930
441
25
6
1860
2291
556533548
556533114
1.540000e-161
579
6
TraesCS5D01G360900
chr5B
90.517
928
48
24
599
1522
535715794
535714903
0.000000e+00
1190
7
TraesCS5D01G360900
chr5B
86.187
695
69
20
636
1315
530974451
530973769
0.000000e+00
726
8
TraesCS5D01G360900
chr5B
93.348
466
30
1
1
465
111686895
111686430
0.000000e+00
688
9
TraesCS5D01G360900
chr5B
84.682
581
49
11
1732
2299
535714663
535714110
5.620000e-151
544
10
TraesCS5D01G360900
chr4D
98.236
567
8
2
1
566
64730920
64730355
0.000000e+00
990
11
TraesCS5D01G360900
chr6D
98.217
561
10
0
1
561
81943479
81944039
0.000000e+00
981
12
TraesCS5D01G360900
chr7D
97.354
567
9
2
1
566
422203881
422204442
0.000000e+00
959
13
TraesCS5D01G360900
chr7A
96.460
565
19
1
1
565
158443615
158444178
0.000000e+00
931
14
TraesCS5D01G360900
chrUn
86.532
594
52
23
773
1344
103772343
103771756
1.510000e-176
628
15
TraesCS5D01G360900
chr6B
85.949
548
54
16
771
1315
54877186
54876659
4.310000e-157
564
16
TraesCS5D01G360900
chr6B
84.034
595
60
29
777
1344
55651463
55650877
7.270000e-150
540
17
TraesCS5D01G360900
chr7B
96.073
331
11
2
987
1316
589740539
589740210
2.610000e-149
538
18
TraesCS5D01G360900
chr1B
93.557
357
19
3
987
1339
398836682
398837038
1.570000e-146
529
19
TraesCS5D01G360900
chr1B
91.304
322
28
0
243
564
296671856
296672177
7.580000e-120
440
20
TraesCS5D01G360900
chr1B
91.903
247
17
3
1
245
296658321
296658566
2.200000e-90
342
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5D01G360900
chr5D
440374130
440376441
2311
True
4270
4270
100.0000
1
2312
1
chr5D.!!$R2
2311
1
TraesCS5D01G360900
chr5D
436823775
436824460
685
True
719
719
85.8970
630
1316
1
chr5D.!!$R1
686
2
TraesCS5D01G360900
chr5D
436349175
436349855
680
False
697
697
85.3240
630
1314
1
chr5D.!!$F1
684
3
TraesCS5D01G360900
chr5A
556533114
556534720
1606
True
889
1199
91.3785
585
2291
2
chr5A.!!$R2
1706
4
TraesCS5D01G360900
chr5A
552078132
552078817
685
True
732
732
86.2460
635
1316
1
chr5A.!!$R1
681
5
TraesCS5D01G360900
chr5B
535714110
535715794
1684
True
867
1190
87.5995
599
2299
2
chr5B.!!$R3
1700
6
TraesCS5D01G360900
chr5B
530973769
530974451
682
True
726
726
86.1870
636
1315
1
chr5B.!!$R2
679
7
TraesCS5D01G360900
chr4D
64730355
64730920
565
True
990
990
98.2360
1
566
1
chr4D.!!$R1
565
8
TraesCS5D01G360900
chr6D
81943479
81944039
560
False
981
981
98.2170
1
561
1
chr6D.!!$F1
560
9
TraesCS5D01G360900
chr7D
422203881
422204442
561
False
959
959
97.3540
1
566
1
chr7D.!!$F1
565
10
TraesCS5D01G360900
chr7A
158443615
158444178
563
False
931
931
96.4600
1
565
1
chr7A.!!$F1
564
11
TraesCS5D01G360900
chrUn
103771756
103772343
587
True
628
628
86.5320
773
1344
1
chrUn.!!$R1
571
12
TraesCS5D01G360900
chr6B
54876659
54877186
527
True
564
564
85.9490
771
1315
1
chr6B.!!$R1
544
13
TraesCS5D01G360900
chr6B
55650877
55651463
586
True
540
540
84.0340
777
1344
1
chr6B.!!$R2
567
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
581
587
0.744281
AAAACCAGTTTCGTGGCCTG
59.256
50.0
3.32
0.0
41.9
4.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1428
1517
0.106918
AAGACGGGAGCAAACACCAA
60.107
50.0
0.0
0.0
0.0
3.67
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
64
65
5.692115
AACCAAAGGAAGGTTTTGTCAAT
57.308
34.783
0.00
0.00
46.85
2.57
580
586
1.480789
AAAAACCAGTTTCGTGGCCT
58.519
45.000
3.32
0.00
41.90
5.19
581
587
0.744281
AAAACCAGTTTCGTGGCCTG
59.256
50.000
3.32
0.00
41.90
4.85
582
588
1.734388
AAACCAGTTTCGTGGCCTGC
61.734
55.000
3.32
0.00
41.90
4.85
583
589
2.594303
CCAGTTTCGTGGCCTGCA
60.594
61.111
3.32
0.00
0.00
4.41
718
731
1.032657
ATCCACCCAGACGAGACTCG
61.033
60.000
22.97
22.97
46.93
4.18
977
1040
0.926293
ATCCAATCCAATCCCACCGT
59.074
50.000
0.00
0.00
0.00
4.83
983
1046
1.776662
TCCAATCCCACCGTAGAGAG
58.223
55.000
0.00
0.00
0.00
3.20
994
1060
1.737201
GTAGAGAGGGGAGAAGCGC
59.263
63.158
0.00
0.00
0.00
5.92
1324
1409
2.444256
GGCTAGGCCGAGGGTTCAT
61.444
63.158
15.29
0.00
39.62
2.57
1368
1457
0.656785
CCGACCGAGAGTAGTAGTGC
59.343
60.000
0.00
0.00
0.00
4.40
1409
1498
2.315386
GGTTCGTGGTTCTCCGTGC
61.315
63.158
0.00
0.00
36.30
5.34
1411
1500
1.144276
TTCGTGGTTCTCCGTGCAA
59.856
52.632
0.00
0.00
36.30
4.08
1413
1502
1.300620
CGTGGTTCTCCGTGCAAGA
60.301
57.895
0.00
0.00
36.30
3.02
1427
1516
1.946745
GCAAGAGCAGTGGTATCTCC
58.053
55.000
0.00
0.00
41.58
3.71
1428
1517
1.484240
GCAAGAGCAGTGGTATCTCCT
59.516
52.381
0.00
0.00
41.58
3.69
1435
1525
2.290323
GCAGTGGTATCTCCTTGGTGTT
60.290
50.000
0.00
0.00
37.07
3.32
1462
1552
1.136141
CGTCTTGTGAGCTGATGTTGC
60.136
52.381
0.00
0.00
0.00
4.17
1463
1553
2.149578
GTCTTGTGAGCTGATGTTGCT
58.850
47.619
0.00
0.00
44.24
3.91
1464
1554
2.095869
GTCTTGTGAGCTGATGTTGCTG
60.096
50.000
0.00
0.00
41.30
4.41
1465
1555
1.878088
CTTGTGAGCTGATGTTGCTGT
59.122
47.619
0.00
0.00
41.30
4.40
1466
1556
1.971481
TGTGAGCTGATGTTGCTGTT
58.029
45.000
0.00
0.00
41.30
3.16
1467
1557
1.605232
TGTGAGCTGATGTTGCTGTTG
59.395
47.619
0.00
0.00
41.30
3.33
1468
1558
1.605710
GTGAGCTGATGTTGCTGTTGT
59.394
47.619
0.00
0.00
41.30
3.32
1469
1559
2.807967
GTGAGCTGATGTTGCTGTTGTA
59.192
45.455
0.00
0.00
41.30
2.41
1470
1560
3.069289
TGAGCTGATGTTGCTGTTGTAG
58.931
45.455
0.00
0.00
41.30
2.74
1471
1561
3.244181
TGAGCTGATGTTGCTGTTGTAGA
60.244
43.478
0.00
0.00
41.30
2.59
1472
1562
3.332919
AGCTGATGTTGCTGTTGTAGAG
58.667
45.455
0.00
0.00
39.56
2.43
1473
1563
3.007290
AGCTGATGTTGCTGTTGTAGAGA
59.993
43.478
0.00
0.00
39.56
3.10
1474
1564
3.937706
GCTGATGTTGCTGTTGTAGAGAT
59.062
43.478
0.00
0.00
0.00
2.75
1475
1565
4.201792
GCTGATGTTGCTGTTGTAGAGATG
60.202
45.833
0.00
0.00
0.00
2.90
1487
1577
6.925211
TGTTGTAGAGATGTACTGGAAGAAG
58.075
40.000
0.00
0.00
37.43
2.85
1507
1597
3.667360
AGTTTGGAATGGAAATTGCAGC
58.333
40.909
0.00
0.00
33.53
5.25
1510
1600
2.250031
TGGAATGGAAATTGCAGCAGT
58.750
42.857
0.00
0.00
0.00
4.40
1522
1612
3.153369
TGCAGCAGTTTATCCCTGAAA
57.847
42.857
0.00
0.00
31.38
2.69
1524
1614
4.088634
TGCAGCAGTTTATCCCTGAAATT
58.911
39.130
0.00
0.00
31.38
1.82
1527
1617
5.105595
GCAGCAGTTTATCCCTGAAATTCTT
60.106
40.000
0.00
0.00
31.38
2.52
1528
1618
6.558909
CAGCAGTTTATCCCTGAAATTCTTC
58.441
40.000
0.00
0.00
31.38
2.87
1529
1619
6.376581
CAGCAGTTTATCCCTGAAATTCTTCT
59.623
38.462
0.00
0.00
32.33
2.85
1530
1620
6.376581
AGCAGTTTATCCCTGAAATTCTTCTG
59.623
38.462
0.00
0.00
32.33
3.02
1533
1623
8.404000
CAGTTTATCCCTGAAATTCTTCTGATG
58.596
37.037
0.00
0.00
33.51
3.07
1535
1625
7.870509
TTATCCCTGAAATTCTTCTGATGTG
57.129
36.000
0.00
0.00
33.51
3.21
1536
1626
5.503634
TCCCTGAAATTCTTCTGATGTGA
57.496
39.130
0.00
0.00
33.51
3.58
1537
1627
5.879763
TCCCTGAAATTCTTCTGATGTGAA
58.120
37.500
0.00
0.00
33.51
3.18
1538
1628
6.487828
TCCCTGAAATTCTTCTGATGTGAAT
58.512
36.000
0.00
0.00
33.51
2.57
1539
1629
6.376299
TCCCTGAAATTCTTCTGATGTGAATG
59.624
38.462
0.00
0.00
33.51
2.67
1540
1630
6.034591
CCTGAAATTCTTCTGATGTGAATGC
58.965
40.000
0.00
0.00
33.51
3.56
1543
1633
6.209986
TGAAATTCTTCTGATGTGAATGCCTT
59.790
34.615
0.00
0.00
31.70
4.35
1544
1634
5.831702
ATTCTTCTGATGTGAATGCCTTC
57.168
39.130
0.00
0.00
0.00
3.46
1545
1635
3.614092
TCTTCTGATGTGAATGCCTTCC
58.386
45.455
0.00
0.00
0.00
3.46
1546
1636
3.009363
TCTTCTGATGTGAATGCCTTCCA
59.991
43.478
0.00
0.00
0.00
3.53
1547
1637
2.995283
TCTGATGTGAATGCCTTCCAG
58.005
47.619
0.00
0.22
0.00
3.86
1549
1639
2.422479
CTGATGTGAATGCCTTCCAGTG
59.578
50.000
0.00
0.00
0.00
3.66
1551
1641
1.236616
TGTGAATGCCTTCCAGTGCG
61.237
55.000
0.00
0.00
0.00
5.34
1552
1642
1.073025
TGAATGCCTTCCAGTGCGT
59.927
52.632
0.00
0.00
0.00
5.24
1553
1643
0.537143
TGAATGCCTTCCAGTGCGTT
60.537
50.000
0.00
0.00
39.31
4.84
1555
1645
1.577328
AATGCCTTCCAGTGCGTTCG
61.577
55.000
0.00
0.00
31.26
3.95
1556
1646
4.090057
GCCTTCCAGTGCGTTCGC
62.090
66.667
10.34
10.34
0.00
4.70
1557
1647
2.357517
CCTTCCAGTGCGTTCGCT
60.358
61.111
17.63
0.00
0.00
4.93
1565
1655
0.385974
AGTGCGTTCGCTGATTTTGC
60.386
50.000
17.63
0.00
0.00
3.68
1566
1656
0.660005
GTGCGTTCGCTGATTTTGCA
60.660
50.000
17.63
0.00
0.00
4.08
1568
1658
1.335780
TGCGTTCGCTGATTTTGCATT
60.336
42.857
17.63
0.00
0.00
3.56
1569
1659
1.318491
GCGTTCGCTGATTTTGCATTC
59.682
47.619
9.99
0.00
0.00
2.67
1570
1660
2.855180
CGTTCGCTGATTTTGCATTCT
58.145
42.857
0.00
0.00
0.00
2.40
1571
1661
2.842485
CGTTCGCTGATTTTGCATTCTC
59.158
45.455
0.00
0.00
0.00
2.87
1572
1662
3.425359
CGTTCGCTGATTTTGCATTCTCT
60.425
43.478
0.00
0.00
0.00
3.10
1573
1663
3.752412
TCGCTGATTTTGCATTCTCTG
57.248
42.857
0.00
0.00
0.00
3.35
1593
1683
3.492353
CCCCATCCATCGCCTGGT
61.492
66.667
0.00
0.00
46.08
4.00
1594
1684
2.111878
CCCATCCATCGCCTGGTC
59.888
66.667
0.00
0.00
46.08
4.02
1595
1685
2.446848
CCCATCCATCGCCTGGTCT
61.447
63.158
0.00
0.00
46.08
3.85
1607
1697
1.516110
CCTGGTCTGATTCCCCATCT
58.484
55.000
0.00
0.00
32.34
2.90
1608
1698
1.142465
CCTGGTCTGATTCCCCATCTG
59.858
57.143
0.00
0.00
32.34
2.90
1609
1699
2.121948
CTGGTCTGATTCCCCATCTGA
58.878
52.381
0.00
0.00
37.48
3.27
1610
1700
2.507058
CTGGTCTGATTCCCCATCTGAA
59.493
50.000
0.00
0.00
40.50
3.02
1611
1701
2.507058
TGGTCTGATTCCCCATCTGAAG
59.493
50.000
0.00
0.00
40.50
3.02
1623
1795
3.260380
CCCATCTGAAGTCTCTGAACTGT
59.740
47.826
0.00
0.00
33.72
3.55
1628
1800
5.595885
TCTGAAGTCTCTGAACTGTGAAAG
58.404
41.667
0.00
0.00
0.00
2.62
1629
1801
4.697514
TGAAGTCTCTGAACTGTGAAAGG
58.302
43.478
0.00
0.00
0.00
3.11
1634
1806
4.276926
GTCTCTGAACTGTGAAAGGCATTT
59.723
41.667
0.00
0.00
0.00
2.32
1644
1816
4.122046
GTGAAAGGCATTTGAGCTGTTTT
58.878
39.130
0.00
0.00
34.17
2.43
1645
1817
5.163468
TGTGAAAGGCATTTGAGCTGTTTTA
60.163
36.000
0.00
0.00
34.17
1.52
1646
1818
5.928264
GTGAAAGGCATTTGAGCTGTTTTAT
59.072
36.000
0.00
0.00
34.17
1.40
1649
1821
3.448660
AGGCATTTGAGCTGTTTTATCCC
59.551
43.478
0.00
0.00
34.17
3.85
1650
1822
3.448660
GGCATTTGAGCTGTTTTATCCCT
59.551
43.478
0.00
0.00
34.17
4.20
1651
1823
4.427312
GCATTTGAGCTGTTTTATCCCTG
58.573
43.478
0.00
0.00
0.00
4.45
1652
1824
4.158394
GCATTTGAGCTGTTTTATCCCTGA
59.842
41.667
0.00
0.00
0.00
3.86
1653
1825
5.336690
GCATTTGAGCTGTTTTATCCCTGAA
60.337
40.000
0.00
0.00
0.00
3.02
1654
1826
6.628844
GCATTTGAGCTGTTTTATCCCTGAAT
60.629
38.462
0.00
0.00
0.00
2.57
1655
1827
6.916360
TTTGAGCTGTTTTATCCCTGAATT
57.084
33.333
0.00
0.00
0.00
2.17
1656
1828
6.515272
TTGAGCTGTTTTATCCCTGAATTC
57.485
37.500
0.00
0.00
0.00
2.17
1659
1831
6.375455
TGAGCTGTTTTATCCCTGAATTCTTC
59.625
38.462
7.05
0.00
0.00
2.87
1660
1832
5.654209
AGCTGTTTTATCCCTGAATTCTTCC
59.346
40.000
7.05
0.00
0.00
3.46
1661
1833
5.654209
GCTGTTTTATCCCTGAATTCTTCCT
59.346
40.000
7.05
0.00
0.00
3.36
1662
1834
6.153510
GCTGTTTTATCCCTGAATTCTTCCTT
59.846
38.462
7.05
0.00
0.00
3.36
1663
1835
7.629437
GCTGTTTTATCCCTGAATTCTTCCTTC
60.629
40.741
7.05
0.00
0.00
3.46
1664
1836
7.237982
TGTTTTATCCCTGAATTCTTCCTTCA
58.762
34.615
7.05
0.00
0.00
3.02
1665
1837
7.728083
TGTTTTATCCCTGAATTCTTCCTTCAA
59.272
33.333
7.05
0.00
32.53
2.69
1666
1838
8.753133
GTTTTATCCCTGAATTCTTCCTTCAAT
58.247
33.333
7.05
0.00
32.53
2.57
1667
1839
8.525290
TTTATCCCTGAATTCTTCCTTCAATC
57.475
34.615
7.05
0.00
32.53
2.67
1668
1840
5.786121
TCCCTGAATTCTTCCTTCAATCT
57.214
39.130
7.05
0.00
32.53
2.40
1669
1841
5.749462
TCCCTGAATTCTTCCTTCAATCTC
58.251
41.667
7.05
0.00
32.53
2.75
1670
1842
5.490357
TCCCTGAATTCTTCCTTCAATCTCT
59.510
40.000
7.05
0.00
32.53
3.10
1671
1843
6.012157
TCCCTGAATTCTTCCTTCAATCTCTT
60.012
38.462
7.05
0.00
32.53
2.85
1672
1844
6.095160
CCCTGAATTCTTCCTTCAATCTCTTG
59.905
42.308
7.05
0.00
32.53
3.02
1673
1845
6.404513
CCTGAATTCTTCCTTCAATCTCTTGC
60.405
42.308
7.05
0.00
32.53
4.01
1674
1846
6.243900
TGAATTCTTCCTTCAATCTCTTGCT
58.756
36.000
7.05
0.00
32.11
3.91
1675
1847
6.373774
TGAATTCTTCCTTCAATCTCTTGCTC
59.626
38.462
7.05
0.00
32.11
4.26
1676
1848
5.495926
TTCTTCCTTCAATCTCTTGCTCT
57.504
39.130
0.00
0.00
32.11
4.09
1677
1849
4.829968
TCTTCCTTCAATCTCTTGCTCTG
58.170
43.478
0.00
0.00
32.11
3.35
1678
1850
4.285517
TCTTCCTTCAATCTCTTGCTCTGT
59.714
41.667
0.00
0.00
32.11
3.41
1679
1851
4.630644
TCCTTCAATCTCTTGCTCTGTT
57.369
40.909
0.00
0.00
32.11
3.16
1680
1852
4.321718
TCCTTCAATCTCTTGCTCTGTTG
58.678
43.478
0.00
0.00
32.11
3.33
1681
1853
3.119919
CCTTCAATCTCTTGCTCTGTTGC
60.120
47.826
0.00
0.00
32.11
4.17
1682
1854
3.413846
TCAATCTCTTGCTCTGTTGCT
57.586
42.857
0.00
0.00
32.11
3.91
1683
1855
3.072211
TCAATCTCTTGCTCTGTTGCTG
58.928
45.455
0.00
0.00
32.11
4.41
1684
1856
2.812591
CAATCTCTTGCTCTGTTGCTGT
59.187
45.455
0.00
0.00
0.00
4.40
1685
1857
1.875009
TCTCTTGCTCTGTTGCTGTG
58.125
50.000
0.00
0.00
0.00
3.66
1686
1858
0.873054
CTCTTGCTCTGTTGCTGTGG
59.127
55.000
0.00
0.00
0.00
4.17
1687
1859
0.469494
TCTTGCTCTGTTGCTGTGGA
59.531
50.000
0.00
0.00
0.00
4.02
1688
1860
1.072806
TCTTGCTCTGTTGCTGTGGAT
59.927
47.619
0.00
0.00
0.00
3.41
1689
1861
1.199327
CTTGCTCTGTTGCTGTGGATG
59.801
52.381
0.00
0.00
0.00
3.51
1690
1862
0.109153
TGCTCTGTTGCTGTGGATGT
59.891
50.000
0.00
0.00
0.00
3.06
1691
1863
0.520404
GCTCTGTTGCTGTGGATGTG
59.480
55.000
0.00
0.00
0.00
3.21
1692
1864
0.520404
CTCTGTTGCTGTGGATGTGC
59.480
55.000
0.00
0.00
0.00
4.57
1693
1865
1.208358
CTGTTGCTGTGGATGTGCG
59.792
57.895
0.00
0.00
0.00
5.34
1694
1866
2.126734
GTTGCTGTGGATGTGCGC
60.127
61.111
0.00
0.00
0.00
6.09
1695
1867
3.725459
TTGCTGTGGATGTGCGCG
61.725
61.111
0.00
0.00
0.00
6.86
1700
1872
4.541482
GTGGATGTGCGCGGCATG
62.541
66.667
19.61
0.00
41.91
4.06
1703
1875
3.271586
GATGTGCGCGGCATGCTA
61.272
61.111
18.92
0.00
41.91
3.49
1704
1876
2.822758
GATGTGCGCGGCATGCTAA
61.823
57.895
18.92
0.00
41.91
3.09
1705
1877
2.971744
GATGTGCGCGGCATGCTAAC
62.972
60.000
18.92
9.39
41.91
2.34
1706
1878
3.499737
GTGCGCGGCATGCTAACT
61.500
61.111
18.92
0.00
41.91
2.24
1707
1879
2.745884
TGCGCGGCATGCTAACTT
60.746
55.556
18.92
0.00
43.27
2.66
1708
1880
2.331893
TGCGCGGCATGCTAACTTT
61.332
52.632
18.92
0.00
43.27
2.66
1711
1883
0.523335
CGCGGCATGCTAACTTTTCC
60.523
55.000
18.92
0.00
43.27
3.13
1718
1890
3.524541
CATGCTAACTTTTCCCCATTGC
58.475
45.455
0.00
0.00
0.00
3.56
1720
1892
1.207089
GCTAACTTTTCCCCATTGCCC
59.793
52.381
0.00
0.00
0.00
5.36
1738
1940
1.734465
CCCGTCTCTGAATTTCAGTGC
59.266
52.381
22.44
15.49
44.58
4.40
1739
1941
2.613977
CCCGTCTCTGAATTTCAGTGCT
60.614
50.000
22.44
0.00
44.58
4.40
1740
1942
3.368427
CCCGTCTCTGAATTTCAGTGCTA
60.368
47.826
22.44
5.95
44.58
3.49
1755
1957
3.118112
CAGTGCTATTCTGAACCATCCCT
60.118
47.826
0.00
0.00
35.20
4.20
1760
1962
2.905415
TTCTGAACCATCCCTGCATT
57.095
45.000
0.00
0.00
0.00
3.56
1762
1964
2.726821
TCTGAACCATCCCTGCATTTC
58.273
47.619
0.00
0.00
0.00
2.17
1767
1969
1.103398
CCATCCCTGCATTTCCGTCC
61.103
60.000
0.00
0.00
0.00
4.79
1772
1974
1.376683
CTGCATTTCCGTCCCCGAA
60.377
57.895
0.00
0.00
35.63
4.30
1773
1975
0.748005
CTGCATTTCCGTCCCCGAAT
60.748
55.000
0.00
0.00
35.63
3.34
1779
1981
1.534336
TTCCGTCCCCGAATCGTGAA
61.534
55.000
0.82
0.00
35.63
3.18
1804
2009
3.012518
CCCACTTCGAGCTGATTCAAAT
58.987
45.455
0.00
0.00
0.00
2.32
1806
2011
4.437930
CCCACTTCGAGCTGATTCAAATTC
60.438
45.833
0.00
0.00
0.00
2.17
1809
2014
4.761739
ACTTCGAGCTGATTCAAATTCCAA
59.238
37.500
0.00
0.00
0.00
3.53
1815
2020
6.363167
AGCTGATTCAAATTCCAATTCCAA
57.637
33.333
0.00
0.00
0.00
3.53
1820
2025
7.687388
TGATTCAAATTCCAATTCCAAATCCA
58.313
30.769
0.00
0.00
0.00
3.41
1825
2030
6.736110
AATTCCAATTCCAAATCCATCGAT
57.264
33.333
0.00
0.00
0.00
3.59
1827
2032
5.518848
TCCAATTCCAAATCCATCGATTG
57.481
39.130
0.00
0.00
38.75
2.67
1845
2060
2.927856
ACACCGATCCACCCAGCA
60.928
61.111
0.00
0.00
0.00
4.41
1847
2062
4.101448
ACCGATCCACCCAGCAGC
62.101
66.667
0.00
0.00
0.00
5.25
1848
2063
4.864334
CCGATCCACCCAGCAGCC
62.864
72.222
0.00
0.00
0.00
4.85
1850
2065
4.864334
GATCCACCCAGCAGCCGG
62.864
72.222
0.00
0.00
0.00
6.13
1854
2069
4.020617
CACCCAGCAGCCGGAGAA
62.021
66.667
5.05
0.00
0.00
2.87
1855
2070
4.021925
ACCCAGCAGCCGGAGAAC
62.022
66.667
5.05
0.00
0.00
3.01
1856
2071
4.785453
CCCAGCAGCCGGAGAACC
62.785
72.222
5.05
0.00
0.00
3.62
1925
2148
2.101640
AGCCCAAAACCTGTTTCCAT
57.898
45.000
0.00
0.00
31.45
3.41
1926
2149
3.252554
AGCCCAAAACCTGTTTCCATA
57.747
42.857
0.00
0.00
31.45
2.74
1969
2192
3.416156
GAGGTGCATTCTGTTCTCCTTT
58.584
45.455
0.00
0.00
0.00
3.11
1991
2214
0.233848
CCCTTCGTTTTCGTTCACGG
59.766
55.000
0.00
0.00
44.46
4.94
2009
2232
1.034292
GGCCCATGACTCTTGCTTCC
61.034
60.000
0.00
0.00
0.00
3.46
2139
2363
2.107141
CCTCTGCCCCGAATCGAC
59.893
66.667
3.36
0.00
0.00
4.20
2246
2470
5.812642
CAGCTTCGATTTGGTAGTTCATACT
59.187
40.000
0.00
0.00
38.44
2.12
2247
2471
6.978659
CAGCTTCGATTTGGTAGTTCATACTA
59.021
38.462
0.00
0.00
35.78
1.82
2273
2497
4.996758
AGCTTTATTGGTTGCAATTTGGAC
59.003
37.500
0.59
0.00
0.00
4.02
2295
2519
1.067821
CGCTACCAATCAGGACTCCTC
59.932
57.143
0.00
0.00
41.22
3.71
2299
2523
4.345257
GCTACCAATCAGGACTCCTCATAA
59.655
45.833
0.00
0.00
41.22
1.90
2300
2524
4.762289
ACCAATCAGGACTCCTCATAAC
57.238
45.455
0.00
0.00
41.22
1.89
2301
2525
4.104086
ACCAATCAGGACTCCTCATAACA
58.896
43.478
0.00
0.00
41.22
2.41
2302
2526
4.723789
ACCAATCAGGACTCCTCATAACAT
59.276
41.667
0.00
0.00
41.22
2.71
2303
2527
5.192522
ACCAATCAGGACTCCTCATAACATT
59.807
40.000
0.00
0.00
41.22
2.71
2304
2528
6.125029
CCAATCAGGACTCCTCATAACATTT
58.875
40.000
0.00
0.00
41.22
2.32
2305
2529
6.039047
CCAATCAGGACTCCTCATAACATTTG
59.961
42.308
0.00
0.00
41.22
2.32
2306
2530
6.566079
ATCAGGACTCCTCATAACATTTGA
57.434
37.500
0.00
0.00
0.00
2.69
2307
2531
6.373005
TCAGGACTCCTCATAACATTTGAA
57.627
37.500
0.00
0.00
0.00
2.69
2308
2532
6.173339
TCAGGACTCCTCATAACATTTGAAC
58.827
40.000
0.00
0.00
0.00
3.18
2309
2533
6.013379
TCAGGACTCCTCATAACATTTGAACT
60.013
38.462
0.00
0.00
0.00
3.01
2310
2534
6.093219
CAGGACTCCTCATAACATTTGAACTG
59.907
42.308
0.00
0.00
0.00
3.16
2311
2535
5.940470
GGACTCCTCATAACATTTGAACTGT
59.060
40.000
0.00
0.00
0.00
3.55
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
64
65
3.687698
GGAAGGCTGCGTCAAAGTTAATA
59.312
43.478
0.00
0.00
0.00
0.98
482
483
4.323417
ACCAAGTCGCATACAAATTCTGA
58.677
39.130
0.00
0.00
0.00
3.27
566
572
2.594303
TGCAGGCCACGAAACTGG
60.594
61.111
5.01
0.00
32.98
4.00
567
573
2.639286
GTGCAGGCCACGAAACTG
59.361
61.111
5.01
0.00
34.22
3.16
574
580
3.360340
GAGCTGTGTGCAGGCCAC
61.360
66.667
5.01
0.00
45.94
5.01
575
581
3.876236
TGAGCTGTGTGCAGGCCA
61.876
61.111
5.01
0.00
45.94
5.36
576
582
3.360340
GTGAGCTGTGTGCAGGCC
61.360
66.667
0.00
0.00
45.94
5.19
577
583
2.281345
AGTGAGCTGTGTGCAGGC
60.281
61.111
0.00
0.00
45.94
4.85
578
584
1.964891
CCAGTGAGCTGTGTGCAGG
60.965
63.158
0.00
0.00
45.94
4.85
579
585
2.614446
GCCAGTGAGCTGTGTGCAG
61.614
63.158
0.00
0.00
45.94
4.41
580
586
2.592574
GCCAGTGAGCTGTGTGCA
60.593
61.111
0.00
0.00
45.94
4.57
581
587
3.360340
GGCCAGTGAGCTGTGTGC
61.360
66.667
0.00
0.00
41.02
4.57
582
588
2.111669
TGGCCAGTGAGCTGTGTG
59.888
61.111
0.00
0.00
41.02
3.82
583
589
2.111878
GTGGCCAGTGAGCTGTGT
59.888
61.111
5.11
0.00
41.02
3.72
602
608
2.657237
GGAGACTGTCGGTGTGGG
59.343
66.667
1.52
0.00
0.00
4.61
800
816
2.122954
GAGGAGTGGGGGTGGAGT
59.877
66.667
0.00
0.00
0.00
3.85
977
1040
1.824329
CGCGCTTCTCCCCTCTCTA
60.824
63.158
5.56
0.00
0.00
2.43
1320
1405
1.299392
CGCGAGCTGGATCGATGAA
60.299
57.895
12.42
0.00
45.56
2.57
1321
1406
2.186826
TCGCGAGCTGGATCGATGA
61.187
57.895
3.71
6.05
45.56
2.92
1324
1409
4.237809
CGTCGCGAGCTGGATCGA
62.238
66.667
10.24
0.00
45.56
3.59
1368
1457
7.172342
ACCCTAGACAGCAACTAGATAGATAG
58.828
42.308
0.00
0.00
39.48
2.08
1409
1498
3.529533
CAAGGAGATACCACTGCTCTTG
58.470
50.000
0.00
0.00
42.04
3.02
1411
1500
2.114616
CCAAGGAGATACCACTGCTCT
58.885
52.381
0.00
0.00
42.04
4.09
1413
1502
1.556911
CACCAAGGAGATACCACTGCT
59.443
52.381
0.00
0.00
42.04
4.24
1420
1509
3.010420
GGAGCAAACACCAAGGAGATAC
58.990
50.000
0.00
0.00
0.00
2.24
1422
1511
1.272147
GGGAGCAAACACCAAGGAGAT
60.272
52.381
0.00
0.00
0.00
2.75
1423
1512
0.110486
GGGAGCAAACACCAAGGAGA
59.890
55.000
0.00
0.00
0.00
3.71
1424
1513
1.237285
CGGGAGCAAACACCAAGGAG
61.237
60.000
0.00
0.00
0.00
3.69
1425
1514
1.228124
CGGGAGCAAACACCAAGGA
60.228
57.895
0.00
0.00
0.00
3.36
1426
1515
1.515521
GACGGGAGCAAACACCAAGG
61.516
60.000
0.00
0.00
0.00
3.61
1427
1516
0.535102
AGACGGGAGCAAACACCAAG
60.535
55.000
0.00
0.00
0.00
3.61
1428
1517
0.106918
AAGACGGGAGCAAACACCAA
60.107
50.000
0.00
0.00
0.00
3.67
1462
1552
6.516739
TCTTCCAGTACATCTCTACAACAG
57.483
41.667
0.00
0.00
0.00
3.16
1463
1553
6.493802
ACTTCTTCCAGTACATCTCTACAACA
59.506
38.462
0.00
0.00
0.00
3.33
1464
1554
6.926313
ACTTCTTCCAGTACATCTCTACAAC
58.074
40.000
0.00
0.00
0.00
3.32
1465
1555
7.540474
AACTTCTTCCAGTACATCTCTACAA
57.460
36.000
0.00
0.00
0.00
2.41
1466
1556
7.378966
CAAACTTCTTCCAGTACATCTCTACA
58.621
38.462
0.00
0.00
0.00
2.74
1467
1557
6.814146
CCAAACTTCTTCCAGTACATCTCTAC
59.186
42.308
0.00
0.00
0.00
2.59
1468
1558
6.724441
TCCAAACTTCTTCCAGTACATCTCTA
59.276
38.462
0.00
0.00
0.00
2.43
1469
1559
5.544176
TCCAAACTTCTTCCAGTACATCTCT
59.456
40.000
0.00
0.00
0.00
3.10
1470
1560
5.794894
TCCAAACTTCTTCCAGTACATCTC
58.205
41.667
0.00
0.00
0.00
2.75
1471
1561
5.825593
TCCAAACTTCTTCCAGTACATCT
57.174
39.130
0.00
0.00
0.00
2.90
1472
1562
6.127897
CCATTCCAAACTTCTTCCAGTACATC
60.128
42.308
0.00
0.00
0.00
3.06
1473
1563
5.711976
CCATTCCAAACTTCTTCCAGTACAT
59.288
40.000
0.00
0.00
0.00
2.29
1474
1564
5.070001
CCATTCCAAACTTCTTCCAGTACA
58.930
41.667
0.00
0.00
0.00
2.90
1475
1565
5.313712
TCCATTCCAAACTTCTTCCAGTAC
58.686
41.667
0.00
0.00
0.00
2.73
1487
1577
3.401182
TGCTGCAATTTCCATTCCAAAC
58.599
40.909
0.00
0.00
0.00
2.93
1507
1597
7.928307
TCAGAAGAATTTCAGGGATAAACTG
57.072
36.000
0.00
0.00
35.70
3.16
1510
1600
8.108999
TCACATCAGAAGAATTTCAGGGATAAA
58.891
33.333
0.00
0.00
35.70
1.40
1522
1612
4.643784
GGAAGGCATTCACATCAGAAGAAT
59.356
41.667
13.81
0.00
37.15
2.40
1524
1614
3.009363
TGGAAGGCATTCACATCAGAAGA
59.991
43.478
13.81
0.00
37.15
2.87
1527
1617
2.306805
ACTGGAAGGCATTCACATCAGA
59.693
45.455
17.93
0.00
39.30
3.27
1528
1618
2.422479
CACTGGAAGGCATTCACATCAG
59.578
50.000
13.81
12.64
39.30
2.90
1529
1619
2.439409
CACTGGAAGGCATTCACATCA
58.561
47.619
13.81
0.54
39.30
3.07
1530
1620
1.133790
GCACTGGAAGGCATTCACATC
59.866
52.381
13.81
0.00
39.30
3.06
1533
1623
1.237285
ACGCACTGGAAGGCATTCAC
61.237
55.000
13.81
3.15
39.30
3.18
1535
1625
0.169009
GAACGCACTGGAAGGCATTC
59.831
55.000
1.60
1.60
39.30
2.67
1536
1626
1.577328
CGAACGCACTGGAAGGCATT
61.577
55.000
0.00
0.00
39.30
3.56
1537
1627
2.034879
CGAACGCACTGGAAGGCAT
61.035
57.895
0.00
0.00
39.30
4.40
1538
1628
2.664851
CGAACGCACTGGAAGGCA
60.665
61.111
0.00
0.00
39.30
4.75
1539
1629
4.090057
GCGAACGCACTGGAAGGC
62.090
66.667
14.26
0.00
39.30
4.35
1540
1630
2.357517
AGCGAACGCACTGGAAGG
60.358
61.111
20.66
0.00
44.88
3.46
1543
1633
0.602638
AAATCAGCGAACGCACTGGA
60.603
50.000
20.66
12.31
44.88
3.86
1544
1634
0.238289
AAAATCAGCGAACGCACTGG
59.762
50.000
20.66
7.70
44.88
4.00
1545
1635
1.321016
CAAAATCAGCGAACGCACTG
58.679
50.000
20.66
11.37
44.88
3.66
1546
1636
0.385974
GCAAAATCAGCGAACGCACT
60.386
50.000
20.66
0.00
44.88
4.40
1547
1637
0.660005
TGCAAAATCAGCGAACGCAC
60.660
50.000
20.66
1.37
44.88
5.34
1549
1639
1.318491
GAATGCAAAATCAGCGAACGC
59.682
47.619
11.31
11.31
42.33
4.84
1551
1641
3.850273
CAGAGAATGCAAAATCAGCGAAC
59.150
43.478
0.00
0.00
33.85
3.95
1552
1642
4.087510
CAGAGAATGCAAAATCAGCGAA
57.912
40.909
0.00
0.00
33.85
4.70
1553
1643
3.752412
CAGAGAATGCAAAATCAGCGA
57.248
42.857
0.00
0.00
33.85
4.93
1584
1674
1.700042
GGGGAATCAGACCAGGCGAT
61.700
60.000
0.00
0.00
0.00
4.58
1585
1675
2.367202
GGGGAATCAGACCAGGCGA
61.367
63.158
0.00
0.00
0.00
5.54
1586
1676
1.987807
ATGGGGAATCAGACCAGGCG
61.988
60.000
0.00
0.00
37.75
5.52
1588
1678
1.142465
CAGATGGGGAATCAGACCAGG
59.858
57.143
0.00
0.00
37.75
4.45
1590
1680
2.268796
TCAGATGGGGAATCAGACCA
57.731
50.000
0.00
0.00
37.81
4.02
1591
1681
2.507471
ACTTCAGATGGGGAATCAGACC
59.493
50.000
0.00
0.00
37.81
3.85
1592
1682
3.454082
AGACTTCAGATGGGGAATCAGAC
59.546
47.826
0.00
0.00
37.81
3.51
1593
1683
3.708631
GAGACTTCAGATGGGGAATCAGA
59.291
47.826
0.00
0.00
37.81
3.27
1594
1684
3.710677
AGAGACTTCAGATGGGGAATCAG
59.289
47.826
0.00
0.00
37.81
2.90
1595
1685
3.453717
CAGAGACTTCAGATGGGGAATCA
59.546
47.826
0.00
0.00
37.81
2.57
1607
1697
4.697514
CCTTTCACAGTTCAGAGACTTCA
58.302
43.478
0.00
0.00
0.00
3.02
1608
1698
3.496507
GCCTTTCACAGTTCAGAGACTTC
59.503
47.826
0.00
0.00
0.00
3.01
1609
1699
3.118261
TGCCTTTCACAGTTCAGAGACTT
60.118
43.478
0.00
0.00
0.00
3.01
1610
1700
2.435805
TGCCTTTCACAGTTCAGAGACT
59.564
45.455
0.00
0.00
0.00
3.24
1611
1701
2.838736
TGCCTTTCACAGTTCAGAGAC
58.161
47.619
0.00
0.00
0.00
3.36
1623
1795
4.405116
AAAACAGCTCAAATGCCTTTCA
57.595
36.364
0.00
0.00
0.00
2.69
1628
1800
3.448660
AGGGATAAAACAGCTCAAATGCC
59.551
43.478
0.00
0.00
0.00
4.40
1629
1801
4.158394
TCAGGGATAAAACAGCTCAAATGC
59.842
41.667
0.00
0.00
0.00
3.56
1634
1806
5.819991
AGAATTCAGGGATAAAACAGCTCA
58.180
37.500
8.44
0.00
0.00
4.26
1651
1823
6.598850
AGAGCAAGAGATTGAAGGAAGAATTC
59.401
38.462
0.00
0.00
46.67
2.17
1652
1824
6.374894
CAGAGCAAGAGATTGAAGGAAGAATT
59.625
38.462
0.00
0.00
0.00
2.17
1653
1825
5.881443
CAGAGCAAGAGATTGAAGGAAGAAT
59.119
40.000
0.00
0.00
0.00
2.40
1654
1826
5.221803
ACAGAGCAAGAGATTGAAGGAAGAA
60.222
40.000
0.00
0.00
0.00
2.52
1655
1827
4.285517
ACAGAGCAAGAGATTGAAGGAAGA
59.714
41.667
0.00
0.00
0.00
2.87
1656
1828
4.577875
ACAGAGCAAGAGATTGAAGGAAG
58.422
43.478
0.00
0.00
0.00
3.46
1659
1831
3.119919
GCAACAGAGCAAGAGATTGAAGG
60.120
47.826
0.00
0.00
0.00
3.46
1660
1832
3.752222
AGCAACAGAGCAAGAGATTGAAG
59.248
43.478
0.00
0.00
36.85
3.02
1661
1833
3.501062
CAGCAACAGAGCAAGAGATTGAA
59.499
43.478
0.00
0.00
36.85
2.69
1662
1834
3.072211
CAGCAACAGAGCAAGAGATTGA
58.928
45.455
0.00
0.00
36.85
2.57
1663
1835
2.812591
ACAGCAACAGAGCAAGAGATTG
59.187
45.455
0.00
0.00
36.85
2.67
1664
1836
2.812591
CACAGCAACAGAGCAAGAGATT
59.187
45.455
0.00
0.00
36.85
2.40
1665
1837
2.424557
CACAGCAACAGAGCAAGAGAT
58.575
47.619
0.00
0.00
36.85
2.75
1666
1838
1.541889
CCACAGCAACAGAGCAAGAGA
60.542
52.381
0.00
0.00
36.85
3.10
1667
1839
0.873054
CCACAGCAACAGAGCAAGAG
59.127
55.000
0.00
0.00
36.85
2.85
1668
1840
0.469494
TCCACAGCAACAGAGCAAGA
59.531
50.000
0.00
0.00
36.85
3.02
1669
1841
1.199327
CATCCACAGCAACAGAGCAAG
59.801
52.381
0.00
0.00
36.85
4.01
1670
1842
1.241165
CATCCACAGCAACAGAGCAA
58.759
50.000
0.00
0.00
36.85
3.91
1671
1843
0.109153
ACATCCACAGCAACAGAGCA
59.891
50.000
0.00
0.00
36.85
4.26
1672
1844
0.520404
CACATCCACAGCAACAGAGC
59.480
55.000
0.00
0.00
0.00
4.09
1673
1845
0.520404
GCACATCCACAGCAACAGAG
59.480
55.000
0.00
0.00
0.00
3.35
1674
1846
1.229975
CGCACATCCACAGCAACAGA
61.230
55.000
0.00
0.00
0.00
3.41
1675
1847
1.208358
CGCACATCCACAGCAACAG
59.792
57.895
0.00
0.00
0.00
3.16
1676
1848
2.906939
GCGCACATCCACAGCAACA
61.907
57.895
0.30
0.00
0.00
3.33
1677
1849
2.126734
GCGCACATCCACAGCAAC
60.127
61.111
0.30
0.00
0.00
4.17
1678
1850
3.725459
CGCGCACATCCACAGCAA
61.725
61.111
8.75
0.00
0.00
3.91
1683
1855
4.541482
CATGCCGCGCACATCCAC
62.541
66.667
8.75
0.00
43.04
4.02
1693
1865
0.179137
GGGAAAAGTTAGCATGCCGC
60.179
55.000
15.66
4.76
42.91
6.53
1694
1866
0.455815
GGGGAAAAGTTAGCATGCCG
59.544
55.000
15.66
0.00
0.00
5.69
1695
1867
1.555967
TGGGGAAAAGTTAGCATGCC
58.444
50.000
15.66
0.00
0.00
4.40
1696
1868
3.524541
CAATGGGGAAAAGTTAGCATGC
58.475
45.455
10.51
10.51
0.00
4.06
1697
1869
3.524541
GCAATGGGGAAAAGTTAGCATG
58.475
45.455
0.00
0.00
0.00
4.06
1698
1870
2.501316
GGCAATGGGGAAAAGTTAGCAT
59.499
45.455
0.00
0.00
0.00
3.79
1699
1871
1.899142
GGCAATGGGGAAAAGTTAGCA
59.101
47.619
0.00
0.00
0.00
3.49
1700
1872
1.207089
GGGCAATGGGGAAAAGTTAGC
59.793
52.381
0.00
0.00
0.00
3.09
1701
1873
1.476488
CGGGCAATGGGGAAAAGTTAG
59.524
52.381
0.00
0.00
0.00
2.34
1702
1874
1.203075
ACGGGCAATGGGGAAAAGTTA
60.203
47.619
0.00
0.00
0.00
2.24
1703
1875
0.471022
ACGGGCAATGGGGAAAAGTT
60.471
50.000
0.00
0.00
0.00
2.66
1704
1876
0.898326
GACGGGCAATGGGGAAAAGT
60.898
55.000
0.00
0.00
0.00
2.66
1705
1877
0.611896
AGACGGGCAATGGGGAAAAG
60.612
55.000
0.00
0.00
0.00
2.27
1706
1878
0.610785
GAGACGGGCAATGGGGAAAA
60.611
55.000
0.00
0.00
0.00
2.29
1707
1879
1.001393
GAGACGGGCAATGGGGAAA
60.001
57.895
0.00
0.00
0.00
3.13
1708
1880
1.923395
AGAGACGGGCAATGGGGAA
60.923
57.895
0.00
0.00
0.00
3.97
1711
1883
0.107017
ATTCAGAGACGGGCAATGGG
60.107
55.000
0.00
0.00
0.00
4.00
1738
1940
3.565764
TGCAGGGATGGTTCAGAATAG
57.434
47.619
0.00
0.00
0.00
1.73
1739
1941
4.524802
AATGCAGGGATGGTTCAGAATA
57.475
40.909
0.00
0.00
0.00
1.75
1740
1942
3.393426
AATGCAGGGATGGTTCAGAAT
57.607
42.857
0.00
0.00
0.00
2.40
1767
1969
2.746803
GGGCGTTTCACGATTCGGG
61.747
63.158
11.29
6.48
46.05
5.14
1772
1974
1.289109
CGAAGTGGGCGTTTCACGAT
61.289
55.000
0.00
0.00
46.05
3.73
1773
1975
1.952133
CGAAGTGGGCGTTTCACGA
60.952
57.895
0.00
0.00
46.05
4.35
1779
1981
2.172483
ATCAGCTCGAAGTGGGCGTT
62.172
55.000
0.00
0.00
0.00
4.84
1789
1991
5.163622
GGAATTGGAATTTGAATCAGCTCGA
60.164
40.000
0.00
0.00
0.00
4.04
1804
2009
5.655974
TCAATCGATGGATTTGGAATTGGAA
59.344
36.000
0.00
0.00
40.90
3.53
1806
2011
5.163530
TGTCAATCGATGGATTTGGAATTGG
60.164
40.000
5.61
0.00
40.90
3.16
1809
2014
4.339247
GGTGTCAATCGATGGATTTGGAAT
59.661
41.667
5.61
0.00
40.90
3.01
1815
2020
2.979814
TCGGTGTCAATCGATGGATT
57.020
45.000
5.61
0.00
43.62
3.01
1820
2025
1.202533
GGTGGATCGGTGTCAATCGAT
60.203
52.381
10.83
10.83
46.96
3.59
1825
2030
1.676968
CTGGGTGGATCGGTGTCAA
59.323
57.895
0.00
0.00
0.00
3.18
1827
2032
2.125106
GCTGGGTGGATCGGTGTC
60.125
66.667
0.00
0.00
0.00
3.67
1850
2065
0.886563
TTCCGTTCTCCTCGGTTCTC
59.113
55.000
4.36
0.00
46.86
2.87
1852
2067
0.731855
CGTTCCGTTCTCCTCGGTTC
60.732
60.000
4.36
0.00
46.86
3.62
1853
2068
1.288127
CGTTCCGTTCTCCTCGGTT
59.712
57.895
4.36
0.00
46.86
4.44
1854
2069
2.633509
CCGTTCCGTTCTCCTCGGT
61.634
63.158
4.36
0.00
46.86
4.69
1856
2071
2.506438
GCCGTTCCGTTCTCCTCG
60.506
66.667
0.00
0.00
0.00
4.63
1857
2072
1.153804
GAGCCGTTCCGTTCTCCTC
60.154
63.158
0.00
0.00
0.00
3.71
1858
2073
2.971452
GAGCCGTTCCGTTCTCCT
59.029
61.111
0.00
0.00
0.00
3.69
1859
2074
2.506438
CGAGCCGTTCCGTTCTCC
60.506
66.667
0.00
0.00
0.00
3.71
1860
2075
1.800713
GACGAGCCGTTCCGTTCTC
60.801
63.158
1.80
0.00
41.37
2.87
1861
2076
2.257676
GACGAGCCGTTCCGTTCT
59.742
61.111
1.80
0.00
41.37
3.01
1862
2077
2.087009
CAGACGAGCCGTTCCGTTC
61.087
63.158
1.80
0.00
41.37
3.95
1863
2078
2.049433
CAGACGAGCCGTTCCGTT
60.049
61.111
1.80
0.00
41.37
4.44
1864
2079
4.719369
GCAGACGAGCCGTTCCGT
62.719
66.667
1.80
0.00
41.37
4.69
1865
2080
4.717629
TGCAGACGAGCCGTTCCG
62.718
66.667
1.80
0.00
41.37
4.30
1906
2121
3.625314
TGGAAACAGGTTTTGGGCT
57.375
47.368
0.00
0.00
35.01
5.19
1925
2148
2.063266
GTGTTCGACGAAATGGCTGTA
58.937
47.619
12.67
0.00
0.00
2.74
1926
2149
0.865769
GTGTTCGACGAAATGGCTGT
59.134
50.000
12.67
0.00
0.00
4.40
1969
2192
0.469070
TGAACGAAAACGAAGGGGGA
59.531
50.000
0.00
0.00
0.00
4.81
1991
2214
1.372087
CGGAAGCAAGAGTCATGGGC
61.372
60.000
0.00
0.00
0.00
5.36
2009
2232
1.002366
CTCGGCTCCAATCTGTTTCG
58.998
55.000
0.00
0.00
0.00
3.46
2097
2321
2.464459
CGCGATCCCAACTCAAGGC
61.464
63.158
0.00
0.00
0.00
4.35
2101
2325
2.434185
GCACGCGATCCCAACTCA
60.434
61.111
15.93
0.00
0.00
3.41
2139
2363
3.058160
CGGGAGCAGCAAAGTGGG
61.058
66.667
0.00
0.00
0.00
4.61
2246
2470
5.736951
AATTGCAACCAATAAAGCTGGTA
57.263
34.783
0.00
0.00
46.75
3.25
2248
2472
4.154556
CCAAATTGCAACCAATAAAGCTGG
59.845
41.667
0.00
0.00
40.69
4.85
2273
2497
0.872021
GAGTCCTGATTGGTAGCGCG
60.872
60.000
0.00
0.00
37.07
6.86
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.