Multiple sequence alignment - TraesCS5D01G360600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G360600 chr5D 100.000 3089 0 0 1 3089 440249354 440246266 0.000000e+00 5705.0
1 TraesCS5D01G360600 chr5B 90.179 1955 107 34 677 2564 535361409 535359473 0.000000e+00 2468.0
2 TraesCS5D01G360600 chr5B 89.010 1374 100 32 952 2307 535333097 535331757 0.000000e+00 1653.0
3 TraesCS5D01G360600 chr5B 92.401 579 38 5 2512 3089 535331280 535330707 0.000000e+00 821.0
4 TraesCS5D01G360600 chr5B 93.548 155 10 0 2292 2446 535331455 535331301 6.660000e-57 231.0
5 TraesCS5D01G360600 chr5B 86.029 136 18 1 267 401 535361577 535361442 8.930000e-31 145.0
6 TraesCS5D01G360600 chrUn 92.593 729 37 9 1380 2098 316845915 316845194 0.000000e+00 1031.0
7 TraesCS5D01G360600 chrUn 91.701 482 23 5 2368 2842 316844681 316844210 0.000000e+00 652.0
8 TraesCS5D01G360600 chrUn 85.882 425 40 8 308 723 473160937 473160524 4.730000e-118 435.0
9 TraesCS5D01G360600 chrUn 90.909 176 14 2 2111 2284 316844979 316844804 5.150000e-58 235.0
10 TraesCS5D01G360600 chr5A 92.593 729 37 9 1380 2098 556005001 556004280 0.000000e+00 1031.0
11 TraesCS5D01G360600 chr5A 81.354 1137 173 18 988 2090 555928974 555927843 0.000000e+00 889.0
12 TraesCS5D01G360600 chr5A 90.214 654 31 9 746 1384 556006535 556005900 0.000000e+00 822.0
13 TraesCS5D01G360600 chr5A 91.701 482 23 5 2368 2842 556003767 556003296 0.000000e+00 652.0
14 TraesCS5D01G360600 chr5A 90.909 176 14 2 2111 2284 556004065 556003890 5.150000e-58 235.0
15 TraesCS5D01G360600 chr5A 90.780 141 8 2 1 138 556011453 556011315 1.890000e-42 183.0
16 TraesCS5D01G360600 chr2A 82.883 111 17 2 347 456 728810343 728810234 7.050000e-17 99.0
17 TraesCS5D01G360600 chr7D 82.278 79 14 0 378 456 504172504 504172426 5.530000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G360600 chr5D 440246266 440249354 3088 True 5705.000000 5705 100.000000 1 3089 1 chr5D.!!$R1 3088
1 TraesCS5D01G360600 chr5B 535359473 535361577 2104 True 1306.500000 2468 88.104000 267 2564 2 chr5B.!!$R2 2297
2 TraesCS5D01G360600 chr5B 535330707 535333097 2390 True 901.666667 1653 91.653000 952 3089 3 chr5B.!!$R1 2137
3 TraesCS5D01G360600 chrUn 316844210 316845915 1705 True 639.333333 1031 91.734333 1380 2842 3 chrUn.!!$R2 1462
4 TraesCS5D01G360600 chr5A 555927843 555928974 1131 True 889.000000 889 81.354000 988 2090 1 chr5A.!!$R1 1102
5 TraesCS5D01G360600 chr5A 556003296 556006535 3239 True 685.000000 1031 91.354250 746 2842 4 chr5A.!!$R3 2096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 501 0.032952 GGTGCACCTCGTTGTGTAGA 59.967 55.0 29.12 0.00 38.52 2.59 F
554 556 0.039437 ACTCGAAATCTCGTGCACGT 60.039 50.0 35.74 18.94 45.62 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 2886 0.094046 GCATTGCGCATTTGTCAAGC 59.906 50.0 12.75 0.0 41.79 4.01 R
2191 3385 0.389296 CCAAGTGATACACGTCGCCA 60.389 55.0 0.00 0.0 39.64 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.852091 GAAAGAGATAAATCTTGCTTTGACATT 57.148 29.630 9.97 0.00 39.47 2.71
27 28 9.635520 AAAGAGATAAATCTTGCTTTGACATTG 57.364 29.630 6.08 0.00 39.47 2.82
28 29 7.256286 AGAGATAAATCTTGCTTTGACATTGC 58.744 34.615 0.00 0.00 37.25 3.56
29 30 7.122353 AGAGATAAATCTTGCTTTGACATTGCT 59.878 33.333 0.00 0.00 37.25 3.91
30 31 7.609056 AGATAAATCTTGCTTTGACATTGCTT 58.391 30.769 2.62 0.00 31.97 3.91
31 32 5.917541 AAATCTTGCTTTGACATTGCTTG 57.082 34.783 2.62 0.00 0.00 4.01
32 33 4.595762 ATCTTGCTTTGACATTGCTTGT 57.404 36.364 2.62 0.00 42.79 3.16
33 34 4.389890 TCTTGCTTTGACATTGCTTGTT 57.610 36.364 2.62 0.00 39.18 2.83
34 35 4.114073 TCTTGCTTTGACATTGCTTGTTG 58.886 39.130 2.62 0.00 39.18 3.33
35 36 2.823984 TGCTTTGACATTGCTTGTTGG 58.176 42.857 2.62 0.00 39.18 3.77
36 37 2.429971 TGCTTTGACATTGCTTGTTGGA 59.570 40.909 2.62 0.00 39.18 3.53
37 38 3.054878 GCTTTGACATTGCTTGTTGGAG 58.945 45.455 0.00 0.00 39.18 3.86
38 39 3.243501 GCTTTGACATTGCTTGTTGGAGA 60.244 43.478 0.00 0.00 39.18 3.71
39 40 3.988379 TTGACATTGCTTGTTGGAGAC 57.012 42.857 0.00 0.00 39.18 3.36
40 41 2.929641 TGACATTGCTTGTTGGAGACA 58.070 42.857 0.00 0.00 39.18 3.41
41 42 2.618241 TGACATTGCTTGTTGGAGACAC 59.382 45.455 0.00 0.00 42.67 3.67
42 43 2.880890 GACATTGCTTGTTGGAGACACT 59.119 45.455 0.00 0.00 42.67 3.55
43 44 2.620115 ACATTGCTTGTTGGAGACACTG 59.380 45.455 0.00 0.00 42.67 3.66
44 45 2.708216 TTGCTTGTTGGAGACACTGA 57.292 45.000 0.00 0.00 42.67 3.41
45 46 1.953559 TGCTTGTTGGAGACACTGAC 58.046 50.000 0.00 0.00 42.67 3.51
46 47 0.861837 GCTTGTTGGAGACACTGACG 59.138 55.000 0.00 0.00 42.67 4.35
47 48 1.806623 GCTTGTTGGAGACACTGACGT 60.807 52.381 0.00 0.00 42.67 4.34
48 49 1.860950 CTTGTTGGAGACACTGACGTG 59.139 52.381 0.00 0.00 46.63 4.49
57 58 2.676744 CACTGACGTGTGTGCTTGA 58.323 52.632 0.00 0.00 36.39 3.02
58 59 1.220529 CACTGACGTGTGTGCTTGAT 58.779 50.000 0.00 0.00 36.39 2.57
59 60 1.193203 CACTGACGTGTGTGCTTGATC 59.807 52.381 0.00 0.00 36.39 2.92
60 61 0.436150 CTGACGTGTGTGCTTGATCG 59.564 55.000 0.00 0.00 0.00 3.69
61 62 0.943835 TGACGTGTGTGCTTGATCGG 60.944 55.000 0.00 0.00 0.00 4.18
62 63 0.666274 GACGTGTGTGCTTGATCGGA 60.666 55.000 0.00 0.00 0.00 4.55
63 64 0.037326 ACGTGTGTGCTTGATCGGAT 60.037 50.000 0.00 0.00 0.00 4.18
64 65 0.647410 CGTGTGTGCTTGATCGGATC 59.353 55.000 11.07 11.07 0.00 3.36
65 66 0.647410 GTGTGTGCTTGATCGGATCG 59.353 55.000 12.99 1.43 0.00 3.69
66 67 0.530288 TGTGTGCTTGATCGGATCGA 59.470 50.000 12.99 10.33 41.13 3.59
67 68 1.203928 GTGTGCTTGATCGGATCGAG 58.796 55.000 24.89 24.89 39.91 4.04
71 72 2.499981 CTTGATCGGATCGAGCGTG 58.500 57.895 19.58 0.84 45.61 5.34
72 73 0.248661 CTTGATCGGATCGAGCGTGT 60.249 55.000 19.58 0.00 45.61 4.49
73 74 1.002792 CTTGATCGGATCGAGCGTGTA 60.003 52.381 19.58 0.00 45.61 2.90
74 75 1.235724 TGATCGGATCGAGCGTGTAT 58.764 50.000 12.99 0.00 45.61 2.29
75 76 2.419667 TGATCGGATCGAGCGTGTATA 58.580 47.619 12.99 0.00 45.61 1.47
76 77 2.809696 TGATCGGATCGAGCGTGTATAA 59.190 45.455 12.99 0.00 45.61 0.98
77 78 3.251487 TGATCGGATCGAGCGTGTATAAA 59.749 43.478 12.99 0.00 45.61 1.40
78 79 3.909776 TCGGATCGAGCGTGTATAAAT 57.090 42.857 0.00 0.00 0.00 1.40
79 80 3.818387 TCGGATCGAGCGTGTATAAATC 58.182 45.455 0.00 0.00 0.00 2.17
80 81 3.501062 TCGGATCGAGCGTGTATAAATCT 59.499 43.478 0.00 0.00 0.00 2.40
81 82 3.604198 CGGATCGAGCGTGTATAAATCTG 59.396 47.826 0.00 0.00 0.00 2.90
82 83 3.921021 GGATCGAGCGTGTATAAATCTGG 59.079 47.826 0.00 0.00 0.00 3.86
83 84 4.321008 GGATCGAGCGTGTATAAATCTGGA 60.321 45.833 0.00 0.00 0.00 3.86
84 85 4.224715 TCGAGCGTGTATAAATCTGGAG 57.775 45.455 0.00 0.00 0.00 3.86
85 86 2.726760 CGAGCGTGTATAAATCTGGAGC 59.273 50.000 0.00 0.00 0.00 4.70
86 87 3.551046 CGAGCGTGTATAAATCTGGAGCT 60.551 47.826 0.00 0.00 34.92 4.09
87 88 3.722147 AGCGTGTATAAATCTGGAGCTG 58.278 45.455 0.00 0.00 0.00 4.24
88 89 2.802816 GCGTGTATAAATCTGGAGCTGG 59.197 50.000 0.00 0.00 0.00 4.85
89 90 3.393800 CGTGTATAAATCTGGAGCTGGG 58.606 50.000 0.00 0.00 0.00 4.45
90 91 3.181465 CGTGTATAAATCTGGAGCTGGGT 60.181 47.826 0.00 0.00 0.00 4.51
91 92 4.038763 CGTGTATAAATCTGGAGCTGGGTA 59.961 45.833 0.00 0.00 0.00 3.69
92 93 5.279506 CGTGTATAAATCTGGAGCTGGGTAT 60.280 44.000 0.00 0.00 0.00 2.73
93 94 6.534634 GTGTATAAATCTGGAGCTGGGTATT 58.465 40.000 0.00 0.00 0.00 1.89
94 95 7.524863 CGTGTATAAATCTGGAGCTGGGTATTA 60.525 40.741 0.00 0.00 0.00 0.98
95 96 7.603024 GTGTATAAATCTGGAGCTGGGTATTAC 59.397 40.741 0.00 0.00 0.00 1.89
96 97 7.512746 TGTATAAATCTGGAGCTGGGTATTACT 59.487 37.037 0.00 0.00 0.00 2.24
97 98 4.965200 AATCTGGAGCTGGGTATTACTC 57.035 45.455 0.00 0.00 0.00 2.59
101 102 2.965562 GGAGCTGGGTATTACTCCTCT 58.034 52.381 0.00 0.00 44.41 3.69
102 103 2.630580 GGAGCTGGGTATTACTCCTCTG 59.369 54.545 0.00 0.00 44.41 3.35
103 104 3.301274 GAGCTGGGTATTACTCCTCTGT 58.699 50.000 0.00 0.00 0.00 3.41
104 105 3.034635 AGCTGGGTATTACTCCTCTGTG 58.965 50.000 0.00 0.00 0.00 3.66
105 106 2.766828 GCTGGGTATTACTCCTCTGTGT 59.233 50.000 0.00 0.00 0.00 3.72
106 107 3.197983 GCTGGGTATTACTCCTCTGTGTT 59.802 47.826 0.00 0.00 0.00 3.32
107 108 4.404715 GCTGGGTATTACTCCTCTGTGTTA 59.595 45.833 0.00 0.00 0.00 2.41
108 109 5.070580 GCTGGGTATTACTCCTCTGTGTTAT 59.929 44.000 0.00 0.00 0.00 1.89
109 110 6.726490 TGGGTATTACTCCTCTGTGTTATC 57.274 41.667 0.00 0.00 0.00 1.75
110 111 6.199376 TGGGTATTACTCCTCTGTGTTATCA 58.801 40.000 0.00 0.00 0.00 2.15
111 112 6.097839 TGGGTATTACTCCTCTGTGTTATCAC 59.902 42.308 0.00 0.00 44.08 3.06
112 113 6.324254 GGGTATTACTCCTCTGTGTTATCACT 59.676 42.308 5.57 0.00 44.14 3.41
113 114 7.147707 GGGTATTACTCCTCTGTGTTATCACTT 60.148 40.741 5.57 0.00 44.14 3.16
114 115 8.910944 GGTATTACTCCTCTGTGTTATCACTTA 58.089 37.037 5.57 0.00 44.14 2.24
115 116 9.733219 GTATTACTCCTCTGTGTTATCACTTAC 57.267 37.037 5.57 0.00 44.14 2.34
116 117 7.770366 TTACTCCTCTGTGTTATCACTTACA 57.230 36.000 5.57 0.00 44.14 2.41
117 118 6.665992 ACTCCTCTGTGTTATCACTTACAA 57.334 37.500 5.57 0.00 44.14 2.41
118 119 6.456501 ACTCCTCTGTGTTATCACTTACAAC 58.543 40.000 5.57 0.00 44.14 3.32
119 120 6.041637 ACTCCTCTGTGTTATCACTTACAACA 59.958 38.462 5.57 0.00 44.14 3.33
120 121 7.004555 TCCTCTGTGTTATCACTTACAACAT 57.995 36.000 5.57 0.00 44.14 2.71
121 122 7.097192 TCCTCTGTGTTATCACTTACAACATC 58.903 38.462 5.57 0.00 44.14 3.06
122 123 6.313905 CCTCTGTGTTATCACTTACAACATCC 59.686 42.308 5.57 0.00 44.14 3.51
123 124 6.764379 TCTGTGTTATCACTTACAACATCCA 58.236 36.000 5.57 0.00 44.14 3.41
124 125 6.873605 TCTGTGTTATCACTTACAACATCCAG 59.126 38.462 5.57 0.00 44.14 3.86
125 126 6.764379 TGTGTTATCACTTACAACATCCAGA 58.236 36.000 5.57 0.00 44.14 3.86
126 127 7.394016 TGTGTTATCACTTACAACATCCAGAT 58.606 34.615 5.57 0.00 44.14 2.90
127 128 8.536175 TGTGTTATCACTTACAACATCCAGATA 58.464 33.333 5.57 0.00 44.14 1.98
128 129 9.035607 GTGTTATCACTTACAACATCCAGATAG 57.964 37.037 0.00 0.00 40.98 2.08
129 130 8.977412 TGTTATCACTTACAACATCCAGATAGA 58.023 33.333 0.00 0.00 0.00 1.98
130 131 9.469807 GTTATCACTTACAACATCCAGATAGAG 57.530 37.037 0.00 0.00 0.00 2.43
131 132 7.667575 ATCACTTACAACATCCAGATAGAGT 57.332 36.000 0.00 0.00 0.00 3.24
132 133 7.101652 TCACTTACAACATCCAGATAGAGTC 57.898 40.000 0.00 0.00 0.00 3.36
133 134 5.974158 CACTTACAACATCCAGATAGAGTCG 59.026 44.000 0.00 0.00 0.00 4.18
134 135 5.886474 ACTTACAACATCCAGATAGAGTCGA 59.114 40.000 0.00 0.00 0.00 4.20
135 136 6.377429 ACTTACAACATCCAGATAGAGTCGAA 59.623 38.462 0.00 0.00 0.00 3.71
136 137 5.661056 ACAACATCCAGATAGAGTCGAAA 57.339 39.130 0.00 0.00 0.00 3.46
137 138 6.037786 ACAACATCCAGATAGAGTCGAAAA 57.962 37.500 0.00 0.00 0.00 2.29
138 139 6.102663 ACAACATCCAGATAGAGTCGAAAAG 58.897 40.000 0.00 0.00 0.00 2.27
139 140 5.269505 ACATCCAGATAGAGTCGAAAAGG 57.730 43.478 0.00 0.00 0.00 3.11
140 141 4.100189 ACATCCAGATAGAGTCGAAAAGGG 59.900 45.833 0.00 0.00 0.00 3.95
141 142 3.031736 TCCAGATAGAGTCGAAAAGGGG 58.968 50.000 0.00 0.00 0.00 4.79
142 143 3.031736 CCAGATAGAGTCGAAAAGGGGA 58.968 50.000 0.00 0.00 0.00 4.81
143 144 3.643792 CCAGATAGAGTCGAAAAGGGGAT 59.356 47.826 0.00 0.00 0.00 3.85
144 145 4.502259 CCAGATAGAGTCGAAAAGGGGATG 60.502 50.000 0.00 0.00 0.00 3.51
145 146 3.643792 AGATAGAGTCGAAAAGGGGATGG 59.356 47.826 0.00 0.00 0.00 3.51
146 147 0.912486 AGAGTCGAAAAGGGGATGGG 59.088 55.000 0.00 0.00 0.00 4.00
147 148 0.618981 GAGTCGAAAAGGGGATGGGT 59.381 55.000 0.00 0.00 0.00 4.51
148 149 1.835531 GAGTCGAAAAGGGGATGGGTA 59.164 52.381 0.00 0.00 0.00 3.69
149 150 1.558294 AGTCGAAAAGGGGATGGGTAC 59.442 52.381 0.00 0.00 0.00 3.34
176 177 3.577313 GCTGGAGCGGCCGATTTC 61.577 66.667 33.48 21.89 40.66 2.17
177 178 2.125147 CTGGAGCGGCCGATTTCA 60.125 61.111 33.48 23.57 40.66 2.69
178 179 2.125147 TGGAGCGGCCGATTTCAG 60.125 61.111 33.48 0.00 40.66 3.02
179 180 2.186903 GGAGCGGCCGATTTCAGA 59.813 61.111 33.48 0.00 0.00 3.27
180 181 2.174319 GGAGCGGCCGATTTCAGAC 61.174 63.158 33.48 9.59 0.00 3.51
181 182 1.447838 GAGCGGCCGATTTCAGACA 60.448 57.895 33.48 0.00 0.00 3.41
182 183 1.424493 GAGCGGCCGATTTCAGACAG 61.424 60.000 33.48 0.00 0.00 3.51
183 184 3.093278 CGGCCGATTTCAGACAGC 58.907 61.111 24.07 0.00 0.00 4.40
184 185 2.802667 CGGCCGATTTCAGACAGCG 61.803 63.158 24.07 0.00 0.00 5.18
185 186 2.401195 GCCGATTTCAGACAGCGC 59.599 61.111 0.00 0.00 0.00 5.92
186 187 2.103042 GCCGATTTCAGACAGCGCT 61.103 57.895 2.64 2.64 0.00 5.92
187 188 0.806102 GCCGATTTCAGACAGCGCTA 60.806 55.000 10.99 0.00 0.00 4.26
188 189 1.640428 CCGATTTCAGACAGCGCTAA 58.360 50.000 10.99 0.00 0.00 3.09
189 190 1.999735 CCGATTTCAGACAGCGCTAAA 59.000 47.619 10.99 7.26 0.00 1.85
190 191 2.415168 CCGATTTCAGACAGCGCTAAAA 59.585 45.455 10.99 6.57 0.00 1.52
191 192 3.484229 CCGATTTCAGACAGCGCTAAAAG 60.484 47.826 10.99 0.00 0.00 2.27
192 193 3.123621 CGATTTCAGACAGCGCTAAAAGT 59.876 43.478 10.99 2.89 0.00 2.66
193 194 4.377431 CGATTTCAGACAGCGCTAAAAGTT 60.377 41.667 10.99 0.00 0.00 2.66
194 195 4.893424 TTTCAGACAGCGCTAAAAGTTT 57.107 36.364 10.99 0.00 0.00 2.66
195 196 4.468095 TTCAGACAGCGCTAAAAGTTTC 57.532 40.909 10.99 0.00 0.00 2.78
196 197 2.806244 TCAGACAGCGCTAAAAGTTTCC 59.194 45.455 10.99 0.00 0.00 3.13
197 198 2.808543 CAGACAGCGCTAAAAGTTTCCT 59.191 45.455 10.99 0.00 0.00 3.36
198 199 2.808543 AGACAGCGCTAAAAGTTTCCTG 59.191 45.455 10.99 0.00 0.00 3.86
199 200 2.806244 GACAGCGCTAAAAGTTTCCTGA 59.194 45.455 10.99 0.00 0.00 3.86
200 201 3.412386 ACAGCGCTAAAAGTTTCCTGAT 58.588 40.909 10.99 0.00 0.00 2.90
201 202 3.821033 ACAGCGCTAAAAGTTTCCTGATT 59.179 39.130 10.99 0.00 0.00 2.57
202 203 4.278419 ACAGCGCTAAAAGTTTCCTGATTT 59.722 37.500 10.99 0.00 0.00 2.17
203 204 5.472137 ACAGCGCTAAAAGTTTCCTGATTTA 59.528 36.000 10.99 0.00 0.00 1.40
204 205 6.024049 CAGCGCTAAAAGTTTCCTGATTTAG 58.976 40.000 10.99 0.00 38.04 1.85
205 206 5.705905 AGCGCTAAAAGTTTCCTGATTTAGT 59.294 36.000 8.99 0.00 37.56 2.24
206 207 6.877322 AGCGCTAAAAGTTTCCTGATTTAGTA 59.123 34.615 8.99 0.00 37.56 1.82
207 208 7.064728 AGCGCTAAAAGTTTCCTGATTTAGTAG 59.935 37.037 8.99 0.00 37.56 2.57
208 209 7.148457 GCGCTAAAAGTTTCCTGATTTAGTAGT 60.148 37.037 0.00 0.00 37.56 2.73
209 210 8.718734 CGCTAAAAGTTTCCTGATTTAGTAGTT 58.281 33.333 0.00 0.00 37.56 2.24
214 215 8.622948 AAGTTTCCTGATTTAGTAGTTTGAGG 57.377 34.615 0.00 0.00 0.00 3.86
215 216 7.168905 AGTTTCCTGATTTAGTAGTTTGAGGG 58.831 38.462 0.00 0.00 0.00 4.30
216 217 5.693769 TCCTGATTTAGTAGTTTGAGGGG 57.306 43.478 0.00 0.00 0.00 4.79
217 218 5.347124 TCCTGATTTAGTAGTTTGAGGGGA 58.653 41.667 0.00 0.00 0.00 4.81
218 219 5.425539 TCCTGATTTAGTAGTTTGAGGGGAG 59.574 44.000 0.00 0.00 0.00 4.30
219 220 5.425539 CCTGATTTAGTAGTTTGAGGGGAGA 59.574 44.000 0.00 0.00 0.00 3.71
220 221 6.070194 CCTGATTTAGTAGTTTGAGGGGAGAA 60.070 42.308 0.00 0.00 0.00 2.87
221 222 7.324388 TGATTTAGTAGTTTGAGGGGAGAAA 57.676 36.000 0.00 0.00 0.00 2.52
222 223 7.394816 TGATTTAGTAGTTTGAGGGGAGAAAG 58.605 38.462 0.00 0.00 0.00 2.62
223 224 5.757099 TTAGTAGTTTGAGGGGAGAAAGG 57.243 43.478 0.00 0.00 0.00 3.11
224 225 2.306219 AGTAGTTTGAGGGGAGAAAGGC 59.694 50.000 0.00 0.00 0.00 4.35
225 226 0.405973 AGTTTGAGGGGAGAAAGGCC 59.594 55.000 0.00 0.00 0.00 5.19
226 227 0.112412 GTTTGAGGGGAGAAAGGCCA 59.888 55.000 5.01 0.00 0.00 5.36
227 228 0.112412 TTTGAGGGGAGAAAGGCCAC 59.888 55.000 5.01 0.00 0.00 5.01
228 229 1.065410 TTGAGGGGAGAAAGGCCACA 61.065 55.000 5.01 0.00 0.00 4.17
229 230 1.002011 GAGGGGAGAAAGGCCACAC 60.002 63.158 5.01 0.00 0.00 3.82
230 231 2.359975 GGGGAGAAAGGCCACACG 60.360 66.667 5.01 0.00 0.00 4.49
231 232 3.056328 GGGAGAAAGGCCACACGC 61.056 66.667 5.01 0.00 0.00 5.34
254 255 4.613143 GGGGGATGCGTAGGAGTA 57.387 61.111 0.00 0.00 0.00 2.59
255 256 2.830475 GGGGGATGCGTAGGAGTAA 58.170 57.895 0.00 0.00 0.00 2.24
256 257 1.125633 GGGGGATGCGTAGGAGTAAA 58.874 55.000 0.00 0.00 0.00 2.01
257 258 1.202615 GGGGGATGCGTAGGAGTAAAC 60.203 57.143 0.00 0.00 0.00 2.01
258 259 1.761198 GGGGATGCGTAGGAGTAAACT 59.239 52.381 0.00 0.00 0.00 2.66
259 260 2.223994 GGGGATGCGTAGGAGTAAACTC 60.224 54.545 1.30 1.30 42.14 3.01
275 276 8.307921 GAGTAAACTCCAGTCGAAAATAACTT 57.692 34.615 0.00 0.00 37.02 2.66
278 279 4.969484 ACTCCAGTCGAAAATAACTTGGT 58.031 39.130 0.00 0.00 0.00 3.67
336 337 6.558771 TTTTGATATTCCAGGACGCATATG 57.441 37.500 0.00 0.00 0.00 1.78
427 429 9.454585 AAATGCATTTAGATACATTCATTCGTG 57.545 29.630 22.95 0.00 29.82 4.35
428 430 6.429624 TGCATTTAGATACATTCATTCGTGC 58.570 36.000 0.00 0.00 0.00 5.34
429 431 6.260714 TGCATTTAGATACATTCATTCGTGCT 59.739 34.615 0.00 0.00 0.00 4.40
430 432 7.440856 TGCATTTAGATACATTCATTCGTGCTA 59.559 33.333 0.00 0.00 0.00 3.49
441 443 8.774586 ACATTCATTCGTGCTATAAGTAATTCC 58.225 33.333 0.00 0.00 0.00 3.01
442 444 7.402811 TTCATTCGTGCTATAAGTAATTCCG 57.597 36.000 0.00 0.00 0.00 4.30
443 445 6.741109 TCATTCGTGCTATAAGTAATTCCGA 58.259 36.000 0.00 0.00 0.00 4.55
444 446 7.204604 TCATTCGTGCTATAAGTAATTCCGAA 58.795 34.615 0.00 0.00 36.42 4.30
445 447 6.817270 TTCGTGCTATAAGTAATTCCGAAC 57.183 37.500 0.00 0.00 0.00 3.95
446 448 4.971830 TCGTGCTATAAGTAATTCCGAACG 59.028 41.667 0.00 0.00 0.00 3.95
447 449 4.147653 CGTGCTATAAGTAATTCCGAACGG 59.852 45.833 6.94 6.94 0.00 4.44
448 450 5.284079 GTGCTATAAGTAATTCCGAACGGA 58.716 41.667 12.04 12.04 43.52 4.69
449 451 5.924825 GTGCTATAAGTAATTCCGAACGGAT 59.075 40.000 16.57 5.74 44.74 4.18
450 452 5.924254 TGCTATAAGTAATTCCGAACGGATG 59.076 40.000 16.57 0.00 44.74 3.51
451 453 5.347907 GCTATAAGTAATTCCGAACGGATGG 59.652 44.000 16.57 2.95 44.74 3.51
452 454 3.899052 AAGTAATTCCGAACGGATGGA 57.101 42.857 16.57 2.72 44.74 3.41
453 455 3.454371 AGTAATTCCGAACGGATGGAG 57.546 47.619 16.57 0.00 44.74 3.86
454 456 2.764572 AGTAATTCCGAACGGATGGAGT 59.235 45.455 16.57 4.39 44.74 3.85
455 457 3.956199 AGTAATTCCGAACGGATGGAGTA 59.044 43.478 16.57 3.44 44.74 2.59
456 458 3.454371 AATTCCGAACGGATGGAGTAG 57.546 47.619 16.57 0.00 44.74 2.57
457 459 0.458669 TTCCGAACGGATGGAGTAGC 59.541 55.000 16.57 0.00 44.74 3.58
458 460 0.395311 TCCGAACGGATGGAGTAGCT 60.395 55.000 12.04 0.00 39.76 3.32
459 461 1.134007 TCCGAACGGATGGAGTAGCTA 60.134 52.381 12.04 0.00 39.76 3.32
460 462 1.267261 CCGAACGGATGGAGTAGCTAG 59.733 57.143 7.53 0.00 37.50 3.42
461 463 1.948145 CGAACGGATGGAGTAGCTAGT 59.052 52.381 0.00 0.00 0.00 2.57
462 464 2.031857 CGAACGGATGGAGTAGCTAGTC 60.032 54.545 18.74 18.74 0.00 2.59
463 465 1.984066 ACGGATGGAGTAGCTAGTCC 58.016 55.000 32.71 32.71 44.42 3.85
470 472 2.894902 GGAGTAGCTAGTCCAAGCAAC 58.105 52.381 33.82 11.72 45.30 4.17
471 473 2.418884 GGAGTAGCTAGTCCAAGCAACC 60.419 54.545 33.82 11.85 45.30 3.77
472 474 2.233922 GAGTAGCTAGTCCAAGCAACCA 59.766 50.000 16.55 0.00 45.30 3.67
473 475 2.637872 AGTAGCTAGTCCAAGCAACCAA 59.362 45.455 0.00 0.00 45.30 3.67
474 476 1.897560 AGCTAGTCCAAGCAACCAAC 58.102 50.000 0.00 0.00 45.30 3.77
475 477 0.881796 GCTAGTCCAAGCAACCAACC 59.118 55.000 0.00 0.00 42.30 3.77
476 478 1.817740 GCTAGTCCAAGCAACCAACCA 60.818 52.381 0.00 0.00 42.30 3.67
477 479 1.880027 CTAGTCCAAGCAACCAACCAC 59.120 52.381 0.00 0.00 0.00 4.16
478 480 1.101049 AGTCCAAGCAACCAACCACG 61.101 55.000 0.00 0.00 0.00 4.94
479 481 1.077357 TCCAAGCAACCAACCACGT 60.077 52.632 0.00 0.00 0.00 4.49
480 482 1.065600 CCAAGCAACCAACCACGTG 59.934 57.895 9.08 9.08 0.00 4.49
481 483 1.065600 CAAGCAACCAACCACGTGG 59.934 57.895 32.83 32.83 44.92 4.94
494 496 2.587753 CGTGGTGCACCTCGTTGT 60.588 61.111 38.95 0.00 45.02 3.32
495 497 2.881266 CGTGGTGCACCTCGTTGTG 61.881 63.158 38.95 19.99 45.02 3.33
496 498 1.817941 GTGGTGCACCTCGTTGTGT 60.818 57.895 34.75 0.00 38.52 3.72
497 499 0.531090 GTGGTGCACCTCGTTGTGTA 60.531 55.000 34.75 10.14 38.52 2.90
498 500 0.249699 TGGTGCACCTCGTTGTGTAG 60.250 55.000 34.75 0.00 38.52 2.74
499 501 0.032952 GGTGCACCTCGTTGTGTAGA 59.967 55.000 29.12 0.00 38.52 2.59
500 502 1.137513 GTGCACCTCGTTGTGTAGAC 58.862 55.000 5.22 0.00 38.52 2.59
501 503 1.037493 TGCACCTCGTTGTGTAGACT 58.963 50.000 8.44 0.00 38.52 3.24
502 504 2.030540 GTGCACCTCGTTGTGTAGACTA 60.031 50.000 5.22 0.00 38.52 2.59
503 505 2.823747 TGCACCTCGTTGTGTAGACTAT 59.176 45.455 8.44 0.00 38.52 2.12
504 506 3.179830 GCACCTCGTTGTGTAGACTATG 58.820 50.000 8.44 0.00 38.52 2.23
505 507 3.367087 GCACCTCGTTGTGTAGACTATGT 60.367 47.826 8.44 0.00 38.52 2.29
506 508 4.806330 CACCTCGTTGTGTAGACTATGTT 58.194 43.478 0.00 0.00 0.00 2.71
507 509 4.621460 CACCTCGTTGTGTAGACTATGTTG 59.379 45.833 0.00 0.00 0.00 3.33
508 510 4.521639 ACCTCGTTGTGTAGACTATGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
509 511 4.857588 CCTCGTTGTGTAGACTATGTTGAC 59.142 45.833 0.00 0.00 0.00 3.18
510 512 4.801891 TCGTTGTGTAGACTATGTTGACC 58.198 43.478 0.00 0.00 0.00 4.02
511 513 4.521639 TCGTTGTGTAGACTATGTTGACCT 59.478 41.667 0.00 0.00 0.00 3.85
512 514 5.010314 TCGTTGTGTAGACTATGTTGACCTT 59.990 40.000 0.00 0.00 0.00 3.50
513 515 5.694910 CGTTGTGTAGACTATGTTGACCTTT 59.305 40.000 0.00 0.00 0.00 3.11
514 516 6.128902 CGTTGTGTAGACTATGTTGACCTTTC 60.129 42.308 0.00 0.00 0.00 2.62
515 517 6.413783 TGTGTAGACTATGTTGACCTTTCA 57.586 37.500 0.00 0.00 0.00 2.69
516 518 6.822442 TGTGTAGACTATGTTGACCTTTCAA 58.178 36.000 0.00 0.00 39.55 2.69
517 519 6.929049 TGTGTAGACTATGTTGACCTTTCAAG 59.071 38.462 0.00 0.00 42.60 3.02
539 541 3.482786 GCACTATTGCTGTCAAAACTCG 58.517 45.455 0.00 0.00 46.17 4.18
540 542 3.186409 GCACTATTGCTGTCAAAACTCGA 59.814 43.478 0.00 0.00 46.17 4.04
541 543 4.319477 GCACTATTGCTGTCAAAACTCGAA 60.319 41.667 0.00 0.00 46.17 3.71
542 544 5.747565 CACTATTGCTGTCAAAACTCGAAA 58.252 37.500 0.00 0.00 35.56 3.46
543 545 6.373779 CACTATTGCTGTCAAAACTCGAAAT 58.626 36.000 0.00 0.00 35.56 2.17
544 546 6.521133 CACTATTGCTGTCAAAACTCGAAATC 59.479 38.462 0.00 0.00 35.56 2.17
545 547 5.695851 ATTGCTGTCAAAACTCGAAATCT 57.304 34.783 0.00 0.00 35.56 2.40
546 548 4.732285 TGCTGTCAAAACTCGAAATCTC 57.268 40.909 0.00 0.00 0.00 2.75
547 549 3.184379 TGCTGTCAAAACTCGAAATCTCG 59.816 43.478 0.00 0.00 46.87 4.04
548 550 3.184581 GCTGTCAAAACTCGAAATCTCGT 59.815 43.478 0.00 0.00 45.62 4.18
549 551 4.692135 CTGTCAAAACTCGAAATCTCGTG 58.308 43.478 0.00 0.00 45.62 4.35
550 552 3.059868 TGTCAAAACTCGAAATCTCGTGC 60.060 43.478 0.00 0.00 45.62 5.34
551 553 3.059868 GTCAAAACTCGAAATCTCGTGCA 60.060 43.478 0.00 0.00 45.62 4.57
552 554 3.059868 TCAAAACTCGAAATCTCGTGCAC 60.060 43.478 6.82 6.82 45.62 4.57
553 555 1.060713 AACTCGAAATCTCGTGCACG 58.939 50.000 32.76 32.76 45.62 5.34
554 556 0.039437 ACTCGAAATCTCGTGCACGT 60.039 50.000 35.74 18.94 45.62 4.49
555 557 1.198408 ACTCGAAATCTCGTGCACGTA 59.802 47.619 35.74 25.78 45.62 3.57
556 558 2.247637 CTCGAAATCTCGTGCACGTAA 58.752 47.619 35.74 25.40 45.62 3.18
557 559 1.980844 TCGAAATCTCGTGCACGTAAC 59.019 47.619 35.74 20.67 45.62 2.50
558 560 1.265732 CGAAATCTCGTGCACGTAACG 60.266 52.381 35.74 26.45 40.33 3.18
559 561 1.717645 GAAATCTCGTGCACGTAACGT 59.282 47.619 35.74 20.76 42.36 3.99
577 579 3.818387 ACGTGAGTACAACATGACTACG 58.182 45.455 15.67 6.29 46.88 3.51
578 580 3.251729 ACGTGAGTACAACATGACTACGT 59.748 43.478 15.67 6.86 46.88 3.57
579 581 4.224433 CGTGAGTACAACATGACTACGTT 58.776 43.478 0.00 0.00 0.00 3.99
580 582 5.049474 ACGTGAGTACAACATGACTACGTTA 60.049 40.000 15.67 0.00 46.88 3.18
581 583 5.507180 CGTGAGTACAACATGACTACGTTAG 59.493 44.000 0.00 0.00 0.00 2.34
582 584 6.376978 GTGAGTACAACATGACTACGTTAGT 58.623 40.000 0.00 0.00 42.86 2.24
593 595 4.942761 ACTACGTTAGTCCAAACTCCAA 57.057 40.909 0.00 0.00 36.92 3.53
594 596 5.280654 ACTACGTTAGTCCAAACTCCAAA 57.719 39.130 0.00 0.00 36.92 3.28
595 597 5.295152 ACTACGTTAGTCCAAACTCCAAAG 58.705 41.667 0.00 0.00 36.92 2.77
596 598 4.146745 ACGTTAGTCCAAACTCCAAAGT 57.853 40.909 0.00 0.00 36.92 2.66
597 599 5.280654 ACGTTAGTCCAAACTCCAAAGTA 57.719 39.130 0.00 0.00 36.92 2.24
598 600 5.052481 ACGTTAGTCCAAACTCCAAAGTAC 58.948 41.667 0.00 0.00 36.92 2.73
599 601 4.149396 CGTTAGTCCAAACTCCAAAGTACG 59.851 45.833 0.00 0.00 36.92 3.67
600 602 3.832615 AGTCCAAACTCCAAAGTACGT 57.167 42.857 0.00 0.00 33.48 3.57
601 603 4.942761 AGTCCAAACTCCAAAGTACGTA 57.057 40.909 0.00 0.00 33.48 3.57
602 604 4.625028 AGTCCAAACTCCAAAGTACGTAC 58.375 43.478 18.10 18.10 33.48 3.67
603 605 3.426525 GTCCAAACTCCAAAGTACGTACG 59.573 47.826 19.49 15.01 33.48 3.67
604 606 3.068024 TCCAAACTCCAAAGTACGTACGT 59.932 43.478 25.98 25.98 33.48 3.57
605 607 3.182972 CCAAACTCCAAAGTACGTACGTG 59.817 47.826 30.25 19.58 33.48 4.49
606 608 2.712057 ACTCCAAAGTACGTACGTGG 57.288 50.000 30.59 30.59 37.51 4.94
607 609 1.956477 ACTCCAAAGTACGTACGTGGT 59.044 47.619 32.67 21.27 37.46 4.16
608 610 3.146066 ACTCCAAAGTACGTACGTGGTA 58.854 45.455 32.67 23.78 37.46 3.25
609 611 3.058224 ACTCCAAAGTACGTACGTGGTAC 60.058 47.826 32.67 20.14 40.37 3.34
616 618 4.113354 AGTACGTACGTGGTACTACTAGC 58.887 47.826 30.25 6.09 46.43 3.42
617 619 3.252974 ACGTACGTGGTACTACTAGCT 57.747 47.619 22.14 0.00 36.93 3.32
618 620 4.386867 ACGTACGTGGTACTACTAGCTA 57.613 45.455 22.14 0.00 36.93 3.32
619 621 4.363999 ACGTACGTGGTACTACTAGCTAG 58.636 47.826 22.14 19.44 36.93 3.42
620 622 4.142138 ACGTACGTGGTACTACTAGCTAGT 60.142 45.833 28.50 28.50 36.93 2.57
621 623 5.067413 ACGTACGTGGTACTACTAGCTAGTA 59.933 44.000 27.73 27.73 36.93 1.82
635 637 9.820725 CTACTAGCTAGTAGTACAAAAGAGAGA 57.179 37.037 37.11 14.72 46.68 3.10
637 639 9.116067 ACTAGCTAGTAGTACAAAAGAGAGATG 57.884 37.037 24.97 0.00 40.47 2.90
638 640 6.801575 AGCTAGTAGTACAAAAGAGAGATGC 58.198 40.000 2.52 0.00 0.00 3.91
639 641 5.980715 GCTAGTAGTACAAAAGAGAGATGCC 59.019 44.000 2.52 0.00 0.00 4.40
640 642 6.405953 GCTAGTAGTACAAAAGAGAGATGCCA 60.406 42.308 2.52 0.00 0.00 4.92
641 643 6.360370 AGTAGTACAAAAGAGAGATGCCAA 57.640 37.500 2.52 0.00 0.00 4.52
642 644 6.166982 AGTAGTACAAAAGAGAGATGCCAAC 58.833 40.000 2.52 0.00 0.00 3.77
643 645 5.234466 AGTACAAAAGAGAGATGCCAACT 57.766 39.130 0.00 0.00 0.00 3.16
644 646 5.625150 AGTACAAAAGAGAGATGCCAACTT 58.375 37.500 0.00 0.00 0.00 2.66
645 647 4.843220 ACAAAAGAGAGATGCCAACTTG 57.157 40.909 0.00 0.00 0.00 3.16
646 648 3.005155 ACAAAAGAGAGATGCCAACTTGC 59.995 43.478 0.00 0.00 0.00 4.01
647 649 2.875094 AAGAGAGATGCCAACTTGCT 57.125 45.000 0.00 0.00 0.00 3.91
648 650 3.988976 AAGAGAGATGCCAACTTGCTA 57.011 42.857 0.00 0.00 0.00 3.49
649 651 3.988976 AGAGAGATGCCAACTTGCTAA 57.011 42.857 0.00 0.00 0.00 3.09
650 652 4.292186 AGAGAGATGCCAACTTGCTAAA 57.708 40.909 0.00 0.00 0.00 1.85
651 653 4.655963 AGAGAGATGCCAACTTGCTAAAA 58.344 39.130 0.00 0.00 0.00 1.52
652 654 5.072741 AGAGAGATGCCAACTTGCTAAAAA 58.927 37.500 0.00 0.00 0.00 1.94
653 655 5.048434 AGAGAGATGCCAACTTGCTAAAAAC 60.048 40.000 0.00 0.00 0.00 2.43
654 656 4.829492 AGAGATGCCAACTTGCTAAAAACT 59.171 37.500 0.00 0.00 0.00 2.66
655 657 5.302823 AGAGATGCCAACTTGCTAAAAACTT 59.697 36.000 0.00 0.00 0.00 2.66
656 658 5.291971 AGATGCCAACTTGCTAAAAACTTG 58.708 37.500 0.00 0.00 0.00 3.16
657 659 4.464069 TGCCAACTTGCTAAAAACTTGT 57.536 36.364 0.00 0.00 0.00 3.16
658 660 4.826556 TGCCAACTTGCTAAAAACTTGTT 58.173 34.783 0.00 0.00 0.00 2.83
659 661 5.241662 TGCCAACTTGCTAAAAACTTGTTT 58.758 33.333 0.00 0.00 0.00 2.83
660 662 5.703130 TGCCAACTTGCTAAAAACTTGTTTT 59.297 32.000 5.74 5.74 0.00 2.43
661 663 6.205658 TGCCAACTTGCTAAAAACTTGTTTTT 59.794 30.769 22.32 22.32 39.21 1.94
685 687 3.402628 TTAGTCAGTCAGCCAACCTTC 57.597 47.619 0.00 0.00 0.00 3.46
708 710 3.367678 GCAAAGCCAACTTGCACTT 57.632 47.368 2.79 0.00 35.85 3.16
709 711 0.932399 GCAAAGCCAACTTGCACTTG 59.068 50.000 2.79 0.00 35.85 3.16
716 718 1.872952 CCAACTTGCACTTGATCGTCA 59.127 47.619 5.08 0.00 0.00 4.35
723 725 6.212235 ACTTGCACTTGATCGTCATAGATAG 58.788 40.000 0.00 0.00 0.00 2.08
725 727 6.581171 TGCACTTGATCGTCATAGATAGAT 57.419 37.500 0.00 0.00 0.00 1.98
726 728 7.687941 TGCACTTGATCGTCATAGATAGATA 57.312 36.000 0.00 0.00 0.00 1.98
727 729 7.530863 TGCACTTGATCGTCATAGATAGATAC 58.469 38.462 0.00 0.00 0.00 2.24
728 730 6.684979 GCACTTGATCGTCATAGATAGATACG 59.315 42.308 0.00 0.00 34.99 3.06
736 738 6.263842 TCGTCATAGATAGATACGTTTGGGTT 59.736 38.462 0.00 0.00 35.21 4.11
766 768 0.977395 ACTGACACTGTTCCCCTAGC 59.023 55.000 0.00 0.00 0.00 3.42
836 847 0.793250 GAAGACTGAAGGCTCAACGC 59.207 55.000 0.00 0.00 38.13 4.84
874 891 2.158986 CCAGCTCAGGTGATTCGATCTT 60.159 50.000 5.11 0.00 32.22 2.40
877 894 2.804933 GCTCAGGTGATTCGATCTTCCC 60.805 54.545 0.00 0.00 0.00 3.97
893 910 1.909781 CCCCCACATGCTTGCTTGT 60.910 57.895 8.09 8.09 0.00 3.16
894 911 1.474332 CCCCCACATGCTTGCTTGTT 61.474 55.000 10.74 0.00 0.00 2.83
895 912 0.320073 CCCCACATGCTTGCTTGTTG 60.320 55.000 10.74 8.17 0.00 3.33
896 913 0.947180 CCCACATGCTTGCTTGTTGC 60.947 55.000 10.74 0.00 43.25 4.17
899 919 1.525197 CACATGCTTGCTTGTTGCTTG 59.475 47.619 10.74 0.00 43.37 4.01
901 921 0.105224 ATGCTTGCTTGTTGCTTGCA 59.895 45.000 9.44 9.44 46.96 4.08
904 924 1.070175 GCTTGCTTGTTGCTTGCATTG 60.070 47.619 0.00 0.00 43.37 2.82
1180 1214 0.797249 CAAGTTCGGCTACGTCCTCG 60.797 60.000 0.00 0.00 41.85 4.63
1327 1388 1.293924 CGCTGATGACTTGTCCATCC 58.706 55.000 0.00 0.00 39.60 3.51
1346 1407 0.806102 CTGTTCATAGGCGACACGGG 60.806 60.000 0.00 0.00 0.00 5.28
1442 2411 4.087892 CCTCCTCACCAGGGCGTG 62.088 72.222 0.00 0.00 40.80 5.34
1613 2582 2.125912 CCTGAAGACGCTCACCGG 60.126 66.667 0.00 0.00 42.52 5.28
1926 2907 1.061799 CGTGAGCTTGACAAATGCGC 61.062 55.000 0.00 0.00 0.00 6.09
1950 2937 6.755141 GCAATGCAAATCTTGTACTGATGATT 59.245 34.615 0.00 0.00 0.00 2.57
1968 2957 2.649531 TTGTTTCCGATGTCCCTTGT 57.350 45.000 0.00 0.00 0.00 3.16
2191 3385 2.382746 CGTGCACGCTGTATGCTGT 61.383 57.895 28.16 0.00 43.77 4.40
2208 3402 0.315886 TGTGGCGACGTGTATCACTT 59.684 50.000 0.00 0.00 31.34 3.16
2232 3426 1.917955 CTGTGATTGTACGCTGTACCG 59.082 52.381 13.67 0.00 0.00 4.02
2233 3427 1.270274 TGTGATTGTACGCTGTACCGT 59.730 47.619 13.67 2.76 44.62 4.83
2234 3428 1.916000 GTGATTGTACGCTGTACCGTC 59.084 52.381 13.67 11.94 42.20 4.79
2268 3464 8.909923 CCCCTTCCGAATAAAAGTGTTAAATAT 58.090 33.333 0.00 0.00 0.00 1.28
2302 3841 5.764686 TGTATTGATGGATGCATGTAACCTC 59.235 40.000 2.46 7.02 0.00 3.85
2398 3950 4.120331 GCTGTGTTCCCATGCGGC 62.120 66.667 0.00 0.00 0.00 6.53
2479 4050 1.291184 TTCGCTGCAGGACAATGACG 61.291 55.000 17.12 7.82 0.00 4.35
2502 4073 0.317770 TGCGCTACAAAGTTTGCAGC 60.318 50.000 25.00 25.00 44.69 5.25
2582 4172 6.467364 CAGTCATTACTAGATCATGATACGCG 59.533 42.308 8.54 3.53 33.48 6.01
2583 4173 5.228220 GTCATTACTAGATCATGATACGCGC 59.772 44.000 8.54 0.00 29.78 6.86
2665 4255 2.158711 TGATCCCTCCAATCATGTGAGC 60.159 50.000 0.00 0.00 0.00 4.26
2713 4304 5.063180 TCAAATTTGTCCAAGCTGCATAG 57.937 39.130 17.47 0.00 0.00 2.23
2743 4334 7.663905 TGCATGTAAAGGCTTTAGTTCTTAGAA 59.336 33.333 19.55 0.00 0.00 2.10
2801 4392 5.163513 GCAGTTGTAGAAACCCATGAATTG 58.836 41.667 0.00 0.00 0.00 2.32
2847 4438 6.448006 CAGGTATAGCATCAAGTGGTACTAC 58.552 44.000 0.19 0.19 43.04 2.73
2891 4482 3.670377 GCCGCTGTGAAACCCCAC 61.670 66.667 0.00 0.00 34.36 4.61
2893 4484 2.551912 CCGCTGTGAAACCCCACAC 61.552 63.158 0.00 0.00 41.63 3.82
2894 4485 1.525995 CGCTGTGAAACCCCACACT 60.526 57.895 0.00 0.00 41.63 3.55
2967 4558 6.624423 TCAGCCAAGATTTATCTGAAAAAGC 58.376 36.000 0.00 0.00 37.19 3.51
2973 4564 8.906867 CCAAGATTTATCTGAAAAAGCTGGATA 58.093 33.333 0.00 0.00 37.19 2.59
3062 4653 3.840666 AGTCACAACTGATCCACTACCAT 59.159 43.478 0.00 0.00 33.32 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.852091 AATGTCAAAGCAAGATTTATCTCTTTC 57.148 29.630 4.37 0.00 35.76 2.62
1 2 9.635520 CAATGTCAAAGCAAGATTTATCTCTTT 57.364 29.630 0.00 0.00 35.76 2.52
2 3 7.758528 GCAATGTCAAAGCAAGATTTATCTCTT 59.241 33.333 0.00 0.00 35.76 2.85
3 4 7.122353 AGCAATGTCAAAGCAAGATTTATCTCT 59.878 33.333 3.15 0.00 35.76 3.10
4 5 7.256286 AGCAATGTCAAAGCAAGATTTATCTC 58.744 34.615 3.15 0.00 35.76 2.75
5 6 7.166691 AGCAATGTCAAAGCAAGATTTATCT 57.833 32.000 3.15 0.00 39.22 1.98
6 7 7.330208 ACAAGCAATGTCAAAGCAAGATTTATC 59.670 33.333 3.15 0.00 37.96 1.75
7 8 7.156673 ACAAGCAATGTCAAAGCAAGATTTAT 58.843 30.769 3.15 0.00 37.96 1.40
8 9 6.514947 ACAAGCAATGTCAAAGCAAGATTTA 58.485 32.000 3.15 0.00 37.96 1.40
9 10 5.362263 ACAAGCAATGTCAAAGCAAGATTT 58.638 33.333 3.15 0.00 37.96 2.17
10 11 4.952460 ACAAGCAATGTCAAAGCAAGATT 58.048 34.783 3.15 0.00 37.96 2.40
11 12 4.595762 ACAAGCAATGTCAAAGCAAGAT 57.404 36.364 3.15 0.00 37.96 2.40
12 13 4.114073 CAACAAGCAATGTCAAAGCAAGA 58.886 39.130 3.15 0.00 42.99 3.02
13 14 3.246699 CCAACAAGCAATGTCAAAGCAAG 59.753 43.478 3.15 0.00 42.99 4.01
14 15 3.118847 TCCAACAAGCAATGTCAAAGCAA 60.119 39.130 3.15 0.00 42.99 3.91
15 16 2.429971 TCCAACAAGCAATGTCAAAGCA 59.570 40.909 3.15 0.00 42.99 3.91
16 17 3.054878 CTCCAACAAGCAATGTCAAAGC 58.945 45.455 0.00 0.00 42.99 3.51
17 18 4.202040 TGTCTCCAACAAGCAATGTCAAAG 60.202 41.667 0.00 0.00 42.99 2.77
18 19 3.698539 TGTCTCCAACAAGCAATGTCAAA 59.301 39.130 0.00 0.00 42.99 2.69
19 20 3.066621 GTGTCTCCAACAAGCAATGTCAA 59.933 43.478 0.00 0.00 42.99 3.18
20 21 2.618241 GTGTCTCCAACAAGCAATGTCA 59.382 45.455 0.00 0.00 42.99 3.58
21 22 2.880890 AGTGTCTCCAACAAGCAATGTC 59.119 45.455 0.00 0.00 42.99 3.06
22 23 2.620115 CAGTGTCTCCAACAAGCAATGT 59.380 45.455 0.00 0.00 46.82 2.71
23 24 2.880268 TCAGTGTCTCCAACAAGCAATG 59.120 45.455 0.00 0.00 40.31 2.82
24 25 2.880890 GTCAGTGTCTCCAACAAGCAAT 59.119 45.455 0.00 0.00 40.31 3.56
25 26 2.288666 GTCAGTGTCTCCAACAAGCAA 58.711 47.619 0.00 0.00 40.31 3.91
26 27 1.806247 CGTCAGTGTCTCCAACAAGCA 60.806 52.381 0.00 0.00 40.31 3.91
27 28 0.861837 CGTCAGTGTCTCCAACAAGC 59.138 55.000 0.00 0.00 40.31 4.01
28 29 1.860950 CACGTCAGTGTCTCCAACAAG 59.139 52.381 0.00 0.00 43.15 3.16
29 30 1.934589 CACGTCAGTGTCTCCAACAA 58.065 50.000 0.00 0.00 43.15 2.83
30 31 3.659850 CACGTCAGTGTCTCCAACA 57.340 52.632 0.00 0.00 43.15 3.33
40 41 1.502231 GATCAAGCACACACGTCAGT 58.498 50.000 0.00 0.00 0.00 3.41
41 42 0.436150 CGATCAAGCACACACGTCAG 59.564 55.000 0.00 0.00 0.00 3.51
42 43 0.943835 CCGATCAAGCACACACGTCA 60.944 55.000 0.00 0.00 0.00 4.35
43 44 0.666274 TCCGATCAAGCACACACGTC 60.666 55.000 0.00 0.00 0.00 4.34
44 45 0.037326 ATCCGATCAAGCACACACGT 60.037 50.000 0.00 0.00 0.00 4.49
45 46 0.647410 GATCCGATCAAGCACACACG 59.353 55.000 3.33 0.00 0.00 4.49
46 47 0.647410 CGATCCGATCAAGCACACAC 59.353 55.000 9.07 0.00 0.00 3.82
47 48 0.530288 TCGATCCGATCAAGCACACA 59.470 50.000 9.07 0.00 0.00 3.72
48 49 1.203928 CTCGATCCGATCAAGCACAC 58.796 55.000 9.07 0.00 34.61 3.82
49 50 0.528466 GCTCGATCCGATCAAGCACA 60.528 55.000 15.19 0.00 34.61 4.57
50 51 1.543941 CGCTCGATCCGATCAAGCAC 61.544 60.000 19.05 0.00 34.61 4.40
51 52 1.299392 CGCTCGATCCGATCAAGCA 60.299 57.895 19.05 0.00 34.61 3.91
52 53 1.299468 ACGCTCGATCCGATCAAGC 60.299 57.895 10.80 10.80 34.61 4.01
53 54 0.248661 ACACGCTCGATCCGATCAAG 60.249 55.000 11.85 0.46 34.61 3.02
54 55 1.018910 TACACGCTCGATCCGATCAA 58.981 50.000 11.85 0.00 34.61 2.57
55 56 1.235724 ATACACGCTCGATCCGATCA 58.764 50.000 11.85 0.00 34.61 2.92
56 57 3.466712 TTATACACGCTCGATCCGATC 57.533 47.619 11.85 0.00 34.61 3.69
57 58 3.909776 TTTATACACGCTCGATCCGAT 57.090 42.857 11.85 3.39 34.61 4.18
58 59 3.501062 AGATTTATACACGCTCGATCCGA 59.499 43.478 11.85 0.00 0.00 4.55
59 60 3.604198 CAGATTTATACACGCTCGATCCG 59.396 47.826 4.34 4.34 0.00 4.18
60 61 3.921021 CCAGATTTATACACGCTCGATCC 59.079 47.826 0.00 0.00 0.00 3.36
61 62 4.795268 TCCAGATTTATACACGCTCGATC 58.205 43.478 0.00 0.00 0.00 3.69
62 63 4.799678 CTCCAGATTTATACACGCTCGAT 58.200 43.478 0.00 0.00 0.00 3.59
63 64 3.550233 GCTCCAGATTTATACACGCTCGA 60.550 47.826 0.00 0.00 0.00 4.04
64 65 2.726760 GCTCCAGATTTATACACGCTCG 59.273 50.000 0.00 0.00 0.00 5.03
65 66 3.738282 CAGCTCCAGATTTATACACGCTC 59.262 47.826 0.00 0.00 0.00 5.03
66 67 3.493350 CCAGCTCCAGATTTATACACGCT 60.493 47.826 0.00 0.00 0.00 5.07
67 68 2.802816 CCAGCTCCAGATTTATACACGC 59.197 50.000 0.00 0.00 0.00 5.34
68 69 3.181465 ACCCAGCTCCAGATTTATACACG 60.181 47.826 0.00 0.00 0.00 4.49
69 70 4.423625 ACCCAGCTCCAGATTTATACAC 57.576 45.455 0.00 0.00 0.00 2.90
70 71 6.763715 AATACCCAGCTCCAGATTTATACA 57.236 37.500 0.00 0.00 0.00 2.29
71 72 7.908453 AGTAATACCCAGCTCCAGATTTATAC 58.092 38.462 0.00 0.00 0.00 1.47
72 73 7.180408 GGAGTAATACCCAGCTCCAGATTTATA 59.820 40.741 4.73 0.00 45.00 0.98
73 74 6.013293 GGAGTAATACCCAGCTCCAGATTTAT 60.013 42.308 4.73 0.00 45.00 1.40
74 75 5.307196 GGAGTAATACCCAGCTCCAGATTTA 59.693 44.000 4.73 0.00 45.00 1.40
75 76 4.103311 GGAGTAATACCCAGCTCCAGATTT 59.897 45.833 4.73 0.00 45.00 2.17
76 77 3.648545 GGAGTAATACCCAGCTCCAGATT 59.351 47.826 4.73 0.00 45.00 2.40
77 78 3.243724 GGAGTAATACCCAGCTCCAGAT 58.756 50.000 4.73 0.00 45.00 2.90
78 79 2.679082 GGAGTAATACCCAGCTCCAGA 58.321 52.381 4.73 0.00 45.00 3.86
81 82 2.630580 CAGAGGAGTAATACCCAGCTCC 59.369 54.545 0.00 0.00 45.75 4.70
82 83 3.068873 CACAGAGGAGTAATACCCAGCTC 59.931 52.174 0.00 0.00 0.00 4.09
83 84 3.034635 CACAGAGGAGTAATACCCAGCT 58.965 50.000 1.80 0.00 0.00 4.24
84 85 2.766828 ACACAGAGGAGTAATACCCAGC 59.233 50.000 1.80 0.00 0.00 4.85
85 86 6.323996 TGATAACACAGAGGAGTAATACCCAG 59.676 42.308 1.80 0.00 0.00 4.45
86 87 6.097839 GTGATAACACAGAGGAGTAATACCCA 59.902 42.308 0.00 0.00 45.32 4.51
87 88 6.514063 GTGATAACACAGAGGAGTAATACCC 58.486 44.000 0.00 0.00 45.32 3.69
102 103 7.849804 ATCTGGATGTTGTAAGTGATAACAC 57.150 36.000 0.00 0.00 41.37 3.32
103 104 8.977412 TCTATCTGGATGTTGTAAGTGATAACA 58.023 33.333 0.00 0.00 42.57 2.41
104 105 9.469807 CTCTATCTGGATGTTGTAAGTGATAAC 57.530 37.037 0.00 0.00 0.00 1.89
105 106 9.201989 ACTCTATCTGGATGTTGTAAGTGATAA 57.798 33.333 0.00 0.00 0.00 1.75
106 107 8.768501 ACTCTATCTGGATGTTGTAAGTGATA 57.231 34.615 0.00 0.00 0.00 2.15
107 108 7.469318 CGACTCTATCTGGATGTTGTAAGTGAT 60.469 40.741 0.00 0.00 0.00 3.06
108 109 6.183360 CGACTCTATCTGGATGTTGTAAGTGA 60.183 42.308 0.00 0.00 0.00 3.41
109 110 5.974158 CGACTCTATCTGGATGTTGTAAGTG 59.026 44.000 0.00 0.00 0.00 3.16
110 111 5.886474 TCGACTCTATCTGGATGTTGTAAGT 59.114 40.000 0.00 0.00 0.00 2.24
111 112 6.378710 TCGACTCTATCTGGATGTTGTAAG 57.621 41.667 0.00 0.00 0.00 2.34
112 113 6.769134 TTCGACTCTATCTGGATGTTGTAA 57.231 37.500 0.00 0.00 0.00 2.41
113 114 6.769134 TTTCGACTCTATCTGGATGTTGTA 57.231 37.500 0.00 0.00 0.00 2.41
114 115 5.661056 TTTCGACTCTATCTGGATGTTGT 57.339 39.130 0.00 0.00 0.00 3.32
115 116 5.521735 CCTTTTCGACTCTATCTGGATGTTG 59.478 44.000 0.00 0.00 0.00 3.33
116 117 5.395768 CCCTTTTCGACTCTATCTGGATGTT 60.396 44.000 0.00 0.00 0.00 2.71
117 118 4.100189 CCCTTTTCGACTCTATCTGGATGT 59.900 45.833 0.00 0.00 0.00 3.06
118 119 4.502259 CCCCTTTTCGACTCTATCTGGATG 60.502 50.000 0.00 0.00 0.00 3.51
119 120 3.643792 CCCCTTTTCGACTCTATCTGGAT 59.356 47.826 0.00 0.00 0.00 3.41
120 121 3.031736 CCCCTTTTCGACTCTATCTGGA 58.968 50.000 0.00 0.00 0.00 3.86
121 122 3.031736 TCCCCTTTTCGACTCTATCTGG 58.968 50.000 0.00 0.00 0.00 3.86
122 123 4.502259 CCATCCCCTTTTCGACTCTATCTG 60.502 50.000 0.00 0.00 0.00 2.90
123 124 3.643792 CCATCCCCTTTTCGACTCTATCT 59.356 47.826 0.00 0.00 0.00 1.98
124 125 3.244249 CCCATCCCCTTTTCGACTCTATC 60.244 52.174 0.00 0.00 0.00 2.08
125 126 2.706190 CCCATCCCCTTTTCGACTCTAT 59.294 50.000 0.00 0.00 0.00 1.98
126 127 2.116238 CCCATCCCCTTTTCGACTCTA 58.884 52.381 0.00 0.00 0.00 2.43
127 128 0.912486 CCCATCCCCTTTTCGACTCT 59.088 55.000 0.00 0.00 0.00 3.24
128 129 0.618981 ACCCATCCCCTTTTCGACTC 59.381 55.000 0.00 0.00 0.00 3.36
129 130 1.558294 GTACCCATCCCCTTTTCGACT 59.442 52.381 0.00 0.00 0.00 4.18
130 131 1.407851 GGTACCCATCCCCTTTTCGAC 60.408 57.143 0.00 0.00 0.00 4.20
131 132 0.913924 GGTACCCATCCCCTTTTCGA 59.086 55.000 0.00 0.00 0.00 3.71
132 133 0.916809 AGGTACCCATCCCCTTTTCG 59.083 55.000 8.74 0.00 0.00 3.46
133 134 1.134189 CGAGGTACCCATCCCCTTTTC 60.134 57.143 8.74 0.00 0.00 2.29
134 135 0.916809 CGAGGTACCCATCCCCTTTT 59.083 55.000 8.74 0.00 0.00 2.27
135 136 1.632965 GCGAGGTACCCATCCCCTTT 61.633 60.000 8.74 0.00 0.00 3.11
136 137 2.070650 GCGAGGTACCCATCCCCTT 61.071 63.158 8.74 0.00 0.00 3.95
137 138 2.446036 GCGAGGTACCCATCCCCT 60.446 66.667 8.74 0.00 0.00 4.79
138 139 3.925090 CGCGAGGTACCCATCCCC 61.925 72.222 8.74 0.00 0.00 4.81
139 140 4.603946 GCGCGAGGTACCCATCCC 62.604 72.222 12.10 0.00 0.00 3.85
140 141 4.944372 CGCGCGAGGTACCCATCC 62.944 72.222 28.94 0.00 0.00 3.51
159 160 3.577313 GAAATCGGCCGCTCCAGC 61.577 66.667 23.51 3.32 37.78 4.85
160 161 2.125147 TGAAATCGGCCGCTCCAG 60.125 61.111 23.51 0.00 34.01 3.86
161 162 2.125147 CTGAAATCGGCCGCTCCA 60.125 61.111 23.51 14.25 34.01 3.86
162 163 2.174319 GTCTGAAATCGGCCGCTCC 61.174 63.158 23.51 10.01 0.00 4.70
163 164 1.424493 CTGTCTGAAATCGGCCGCTC 61.424 60.000 23.51 17.09 0.00 5.03
164 165 1.448540 CTGTCTGAAATCGGCCGCT 60.449 57.895 23.51 8.48 0.00 5.52
165 166 3.093278 CTGTCTGAAATCGGCCGC 58.907 61.111 23.51 6.96 0.00 6.53
166 167 2.802667 CGCTGTCTGAAATCGGCCG 61.803 63.158 22.12 22.12 32.96 6.13
167 168 3.093278 CGCTGTCTGAAATCGGCC 58.907 61.111 0.00 0.00 32.96 6.13
168 169 0.806102 TAGCGCTGTCTGAAATCGGC 60.806 55.000 22.90 0.00 0.00 5.54
169 170 1.640428 TTAGCGCTGTCTGAAATCGG 58.360 50.000 22.90 0.00 0.00 4.18
170 171 3.123621 ACTTTTAGCGCTGTCTGAAATCG 59.876 43.478 22.90 8.72 0.00 3.34
171 172 4.670227 ACTTTTAGCGCTGTCTGAAATC 57.330 40.909 22.90 0.00 0.00 2.17
172 173 5.438761 AAACTTTTAGCGCTGTCTGAAAT 57.561 34.783 22.90 0.00 0.00 2.17
173 174 4.261031 GGAAACTTTTAGCGCTGTCTGAAA 60.261 41.667 22.90 9.42 0.00 2.69
174 175 3.250040 GGAAACTTTTAGCGCTGTCTGAA 59.750 43.478 22.90 1.98 0.00 3.02
175 176 2.806244 GGAAACTTTTAGCGCTGTCTGA 59.194 45.455 22.90 0.00 0.00 3.27
176 177 2.808543 AGGAAACTTTTAGCGCTGTCTG 59.191 45.455 22.90 10.40 37.44 3.51
177 178 2.808543 CAGGAAACTTTTAGCGCTGTCT 59.191 45.455 22.90 0.00 40.21 3.41
178 179 2.806244 TCAGGAAACTTTTAGCGCTGTC 59.194 45.455 22.90 5.50 40.21 3.51
179 180 2.846193 TCAGGAAACTTTTAGCGCTGT 58.154 42.857 22.90 6.17 40.21 4.40
180 181 4.425577 AATCAGGAAACTTTTAGCGCTG 57.574 40.909 22.90 5.37 40.21 5.18
181 182 5.705905 ACTAAATCAGGAAACTTTTAGCGCT 59.294 36.000 17.26 17.26 41.39 5.92
182 183 5.939457 ACTAAATCAGGAAACTTTTAGCGC 58.061 37.500 0.00 0.00 41.39 5.92
183 184 8.252964 ACTACTAAATCAGGAAACTTTTAGCG 57.747 34.615 0.00 0.00 41.39 4.26
188 189 9.067986 CCTCAAACTACTAAATCAGGAAACTTT 57.932 33.333 0.00 0.00 40.21 2.66
189 190 7.665974 CCCTCAAACTACTAAATCAGGAAACTT 59.334 37.037 0.00 0.00 40.21 2.66
190 191 7.168905 CCCTCAAACTACTAAATCAGGAAACT 58.831 38.462 0.00 0.00 46.44 2.66
191 192 6.374613 CCCCTCAAACTACTAAATCAGGAAAC 59.625 42.308 0.00 0.00 0.00 2.78
192 193 6.273730 TCCCCTCAAACTACTAAATCAGGAAA 59.726 38.462 0.00 0.00 0.00 3.13
193 194 5.788533 TCCCCTCAAACTACTAAATCAGGAA 59.211 40.000 0.00 0.00 0.00 3.36
194 195 5.347124 TCCCCTCAAACTACTAAATCAGGA 58.653 41.667 0.00 0.00 0.00 3.86
195 196 5.425539 TCTCCCCTCAAACTACTAAATCAGG 59.574 44.000 0.00 0.00 0.00 3.86
196 197 6.546428 TCTCCCCTCAAACTACTAAATCAG 57.454 41.667 0.00 0.00 0.00 2.90
197 198 6.945636 TTCTCCCCTCAAACTACTAAATCA 57.054 37.500 0.00 0.00 0.00 2.57
198 199 6.824196 CCTTTCTCCCCTCAAACTACTAAATC 59.176 42.308 0.00 0.00 0.00 2.17
199 200 6.722328 CCTTTCTCCCCTCAAACTACTAAAT 58.278 40.000 0.00 0.00 0.00 1.40
200 201 5.514310 GCCTTTCTCCCCTCAAACTACTAAA 60.514 44.000 0.00 0.00 0.00 1.85
201 202 4.019591 GCCTTTCTCCCCTCAAACTACTAA 60.020 45.833 0.00 0.00 0.00 2.24
202 203 3.518303 GCCTTTCTCCCCTCAAACTACTA 59.482 47.826 0.00 0.00 0.00 1.82
203 204 2.306219 GCCTTTCTCCCCTCAAACTACT 59.694 50.000 0.00 0.00 0.00 2.57
204 205 2.618302 GGCCTTTCTCCCCTCAAACTAC 60.618 54.545 0.00 0.00 0.00 2.73
205 206 1.633945 GGCCTTTCTCCCCTCAAACTA 59.366 52.381 0.00 0.00 0.00 2.24
206 207 0.405973 GGCCTTTCTCCCCTCAAACT 59.594 55.000 0.00 0.00 0.00 2.66
207 208 0.112412 TGGCCTTTCTCCCCTCAAAC 59.888 55.000 3.32 0.00 0.00 2.93
208 209 0.112412 GTGGCCTTTCTCCCCTCAAA 59.888 55.000 3.32 0.00 0.00 2.69
209 210 1.065410 TGTGGCCTTTCTCCCCTCAA 61.065 55.000 3.32 0.00 0.00 3.02
210 211 1.463214 TGTGGCCTTTCTCCCCTCA 60.463 57.895 3.32 0.00 0.00 3.86
211 212 1.002011 GTGTGGCCTTTCTCCCCTC 60.002 63.158 3.32 0.00 0.00 4.30
212 213 2.895424 CGTGTGGCCTTTCTCCCCT 61.895 63.158 3.32 0.00 0.00 4.79
213 214 2.359975 CGTGTGGCCTTTCTCCCC 60.360 66.667 3.32 0.00 0.00 4.81
214 215 3.056328 GCGTGTGGCCTTTCTCCC 61.056 66.667 3.32 0.00 34.80 4.30
237 238 1.125633 TTTACTCCTACGCATCCCCC 58.874 55.000 0.00 0.00 0.00 5.40
238 239 1.761198 AGTTTACTCCTACGCATCCCC 59.239 52.381 0.00 0.00 0.00 4.81
239 240 3.095102 GAGTTTACTCCTACGCATCCC 57.905 52.381 0.00 0.00 37.02 3.85
250 251 7.886405 AGTTATTTTCGACTGGAGTTTACTC 57.114 36.000 1.18 1.18 42.14 2.59
251 252 7.172703 CCAAGTTATTTTCGACTGGAGTTTACT 59.827 37.037 0.00 0.00 0.00 2.24
252 253 7.041576 ACCAAGTTATTTTCGACTGGAGTTTAC 60.042 37.037 0.00 0.00 0.00 2.01
253 254 6.993902 ACCAAGTTATTTTCGACTGGAGTTTA 59.006 34.615 0.00 0.00 0.00 2.01
254 255 5.826208 ACCAAGTTATTTTCGACTGGAGTTT 59.174 36.000 0.00 0.00 0.00 2.66
255 256 5.374071 ACCAAGTTATTTTCGACTGGAGTT 58.626 37.500 0.00 0.00 0.00 3.01
256 257 4.969484 ACCAAGTTATTTTCGACTGGAGT 58.031 39.130 0.00 0.00 0.00 3.85
257 258 7.429636 TTTACCAAGTTATTTTCGACTGGAG 57.570 36.000 0.00 0.00 0.00 3.86
258 259 7.282675 TGTTTTACCAAGTTATTTTCGACTGGA 59.717 33.333 0.00 0.00 0.00 3.86
259 260 7.419204 TGTTTTACCAAGTTATTTTCGACTGG 58.581 34.615 0.00 0.00 0.00 4.00
260 261 8.844441 TTGTTTTACCAAGTTATTTTCGACTG 57.156 30.769 0.00 0.00 0.00 3.51
261 262 9.673454 GATTGTTTTACCAAGTTATTTTCGACT 57.327 29.630 0.00 0.00 0.00 4.18
262 263 9.673454 AGATTGTTTTACCAAGTTATTTTCGAC 57.327 29.630 0.00 0.00 0.00 4.20
263 264 9.887406 GAGATTGTTTTACCAAGTTATTTTCGA 57.113 29.630 0.00 0.00 0.00 3.71
264 265 9.672086 TGAGATTGTTTTACCAAGTTATTTTCG 57.328 29.630 0.00 0.00 0.00 3.46
315 316 4.996758 CACATATGCGTCCTGGAATATCAA 59.003 41.667 1.58 0.00 0.00 2.57
323 324 2.992089 GGACACATATGCGTCCTGG 58.008 57.895 28.22 3.43 46.83 4.45
330 331 7.042335 GGGAGTATATGTTAGGACACATATGC 58.958 42.308 14.06 12.86 45.84 3.14
333 334 7.532199 TCAGGGAGTATATGTTAGGACACATA 58.468 38.462 0.00 0.00 42.53 2.29
334 335 6.382087 TCAGGGAGTATATGTTAGGACACAT 58.618 40.000 0.00 0.00 38.91 3.21
336 337 6.722129 AGATCAGGGAGTATATGTTAGGACAC 59.278 42.308 0.00 0.00 38.91 3.67
401 403 9.454585 CACGAATGAATGTATCTAAATGCATTT 57.545 29.630 26.72 26.72 44.93 2.32
402 404 7.592533 GCACGAATGAATGTATCTAAATGCATT 59.407 33.333 5.99 5.99 46.77 3.56
403 405 7.040892 AGCACGAATGAATGTATCTAAATGCAT 60.041 33.333 0.00 0.00 39.57 3.96
404 406 6.260714 AGCACGAATGAATGTATCTAAATGCA 59.739 34.615 0.00 0.00 31.71 3.96
405 407 6.662616 AGCACGAATGAATGTATCTAAATGC 58.337 36.000 0.00 0.00 0.00 3.56
415 417 8.774586 GGAATTACTTATAGCACGAATGAATGT 58.225 33.333 0.00 0.00 0.00 2.71
416 418 7.952101 CGGAATTACTTATAGCACGAATGAATG 59.048 37.037 0.00 0.00 0.00 2.67
417 419 7.870954 TCGGAATTACTTATAGCACGAATGAAT 59.129 33.333 0.00 0.00 0.00 2.57
419 421 6.741109 TCGGAATTACTTATAGCACGAATGA 58.259 36.000 0.00 0.00 0.00 2.57
420 422 7.281484 GTTCGGAATTACTTATAGCACGAATG 58.719 38.462 0.00 0.00 39.51 2.67
421 423 6.143438 CGTTCGGAATTACTTATAGCACGAAT 59.857 38.462 0.00 0.00 39.51 3.34
422 424 5.456497 CGTTCGGAATTACTTATAGCACGAA 59.544 40.000 0.00 0.00 35.76 3.85
423 425 4.971830 CGTTCGGAATTACTTATAGCACGA 59.028 41.667 0.00 0.00 0.00 4.35
424 426 4.147653 CCGTTCGGAATTACTTATAGCACG 59.852 45.833 5.19 0.00 0.00 5.34
425 427 5.284079 TCCGTTCGGAATTACTTATAGCAC 58.716 41.667 11.66 0.00 0.00 4.40
426 428 5.518848 TCCGTTCGGAATTACTTATAGCA 57.481 39.130 11.66 0.00 0.00 3.49
427 429 5.347907 CCATCCGTTCGGAATTACTTATAGC 59.652 44.000 17.72 0.00 37.88 2.97
428 430 6.684686 TCCATCCGTTCGGAATTACTTATAG 58.315 40.000 17.72 0.00 37.88 1.31
429 431 6.266103 ACTCCATCCGTTCGGAATTACTTATA 59.734 38.462 17.72 0.00 37.88 0.98
430 432 5.070047 ACTCCATCCGTTCGGAATTACTTAT 59.930 40.000 17.72 0.00 37.88 1.73
432 434 3.197116 ACTCCATCCGTTCGGAATTACTT 59.803 43.478 17.72 0.00 37.88 2.24
433 435 2.764572 ACTCCATCCGTTCGGAATTACT 59.235 45.455 17.72 0.00 37.88 2.24
434 436 3.175109 ACTCCATCCGTTCGGAATTAC 57.825 47.619 17.72 0.00 37.88 1.89
435 437 3.243636 GCTACTCCATCCGTTCGGAATTA 60.244 47.826 17.72 5.51 37.88 1.40
436 438 2.483188 GCTACTCCATCCGTTCGGAATT 60.483 50.000 17.72 0.00 37.88 2.17
437 439 1.068741 GCTACTCCATCCGTTCGGAAT 59.931 52.381 17.72 4.49 37.88 3.01
438 440 0.458669 GCTACTCCATCCGTTCGGAA 59.541 55.000 17.72 1.17 37.88 4.30
439 441 0.395311 AGCTACTCCATCCGTTCGGA 60.395 55.000 16.22 16.22 38.82 4.55
440 442 1.267261 CTAGCTACTCCATCCGTTCGG 59.733 57.143 4.74 4.74 0.00 4.30
441 443 1.948145 ACTAGCTACTCCATCCGTTCG 59.052 52.381 0.00 0.00 0.00 3.95
442 444 2.293955 GGACTAGCTACTCCATCCGTTC 59.706 54.545 13.01 0.00 0.00 3.95
443 445 2.308690 GGACTAGCTACTCCATCCGTT 58.691 52.381 13.01 0.00 0.00 4.44
444 446 1.214673 TGGACTAGCTACTCCATCCGT 59.785 52.381 15.81 0.00 31.20 4.69
445 447 1.982660 TGGACTAGCTACTCCATCCG 58.017 55.000 15.81 0.00 31.20 4.18
446 448 2.036604 GCTTGGACTAGCTACTCCATCC 59.963 54.545 19.22 11.47 36.42 3.51
447 449 2.695666 TGCTTGGACTAGCTACTCCATC 59.304 50.000 19.22 14.98 41.76 3.51
448 450 2.752030 TGCTTGGACTAGCTACTCCAT 58.248 47.619 19.22 0.00 41.76 3.41
449 451 2.231716 TGCTTGGACTAGCTACTCCA 57.768 50.000 15.81 15.81 41.76 3.86
450 452 2.418884 GGTTGCTTGGACTAGCTACTCC 60.419 54.545 16.10 11.43 43.41 3.85
451 453 2.233922 TGGTTGCTTGGACTAGCTACTC 59.766 50.000 16.10 9.53 43.41 2.59
452 454 2.257207 TGGTTGCTTGGACTAGCTACT 58.743 47.619 16.10 0.00 43.41 2.57
453 455 2.742589 GTTGGTTGCTTGGACTAGCTAC 59.257 50.000 10.55 10.55 43.25 3.58
454 456 2.290071 GGTTGGTTGCTTGGACTAGCTA 60.290 50.000 7.24 0.00 41.76 3.32
455 457 1.545651 GGTTGGTTGCTTGGACTAGCT 60.546 52.381 7.24 0.00 41.76 3.32
456 458 0.881796 GGTTGGTTGCTTGGACTAGC 59.118 55.000 0.00 0.00 41.59 3.42
457 459 1.880027 GTGGTTGGTTGCTTGGACTAG 59.120 52.381 0.00 0.00 0.00 2.57
458 460 1.812324 CGTGGTTGGTTGCTTGGACTA 60.812 52.381 0.00 0.00 0.00 2.59
459 461 1.101049 CGTGGTTGGTTGCTTGGACT 61.101 55.000 0.00 0.00 0.00 3.85
460 462 1.358759 CGTGGTTGGTTGCTTGGAC 59.641 57.895 0.00 0.00 0.00 4.02
461 463 1.077357 ACGTGGTTGGTTGCTTGGA 60.077 52.632 0.00 0.00 0.00 3.53
462 464 1.065600 CACGTGGTTGGTTGCTTGG 59.934 57.895 7.95 0.00 0.00 3.61
463 465 1.065600 CCACGTGGTTGGTTGCTTG 59.934 57.895 26.95 0.00 0.00 4.01
464 466 3.520402 CCACGTGGTTGGTTGCTT 58.480 55.556 26.95 0.00 0.00 3.91
478 480 0.531090 TACACAACGAGGTGCACCAC 60.531 55.000 36.39 29.23 42.55 4.16
479 481 0.249699 CTACACAACGAGGTGCACCA 60.250 55.000 36.39 12.51 42.55 4.17
480 482 0.032952 TCTACACAACGAGGTGCACC 59.967 55.000 29.22 29.22 42.55 5.01
481 483 1.137513 GTCTACACAACGAGGTGCAC 58.862 55.000 8.80 8.80 42.55 4.57
482 484 1.037493 AGTCTACACAACGAGGTGCA 58.963 50.000 10.34 0.00 42.55 4.57
483 485 3.179830 CATAGTCTACACAACGAGGTGC 58.820 50.000 10.34 0.00 42.55 5.01
484 486 4.436242 ACATAGTCTACACAACGAGGTG 57.564 45.455 9.14 9.14 44.35 4.00
485 487 4.521639 TCAACATAGTCTACACAACGAGGT 59.478 41.667 0.00 0.00 0.00 3.85
486 488 4.857588 GTCAACATAGTCTACACAACGAGG 59.142 45.833 0.00 0.00 0.00 4.63
487 489 4.857588 GGTCAACATAGTCTACACAACGAG 59.142 45.833 0.00 0.00 0.00 4.18
488 490 4.521639 AGGTCAACATAGTCTACACAACGA 59.478 41.667 0.00 0.00 0.00 3.85
489 491 4.806330 AGGTCAACATAGTCTACACAACG 58.194 43.478 0.00 0.00 0.00 4.10
490 492 6.704493 TGAAAGGTCAACATAGTCTACACAAC 59.296 38.462 0.00 0.00 0.00 3.32
491 493 6.822442 TGAAAGGTCAACATAGTCTACACAA 58.178 36.000 0.00 0.00 0.00 3.33
492 494 6.413783 TGAAAGGTCAACATAGTCTACACA 57.586 37.500 0.00 0.00 0.00 3.72
493 495 6.369065 CCTTGAAAGGTCAACATAGTCTACAC 59.631 42.308 0.57 0.00 38.88 2.90
494 496 6.464222 CCTTGAAAGGTCAACATAGTCTACA 58.536 40.000 0.57 0.00 38.88 2.74
495 497 6.969828 CCTTGAAAGGTCAACATAGTCTAC 57.030 41.667 0.57 0.00 38.88 2.59
519 521 4.990543 TCGAGTTTTGACAGCAATAGTG 57.009 40.909 0.00 0.00 33.25 2.74
520 522 6.428159 AGATTTCGAGTTTTGACAGCAATAGT 59.572 34.615 0.00 0.00 33.25 2.12
521 523 6.835914 AGATTTCGAGTTTTGACAGCAATAG 58.164 36.000 0.00 0.00 33.25 1.73
522 524 6.801539 AGATTTCGAGTTTTGACAGCAATA 57.198 33.333 0.00 0.00 33.25 1.90
523 525 5.693814 GAGATTTCGAGTTTTGACAGCAAT 58.306 37.500 0.00 0.00 33.25 3.56
524 526 5.095691 GAGATTTCGAGTTTTGACAGCAA 57.904 39.130 0.00 0.00 0.00 3.91
525 527 4.732285 GAGATTTCGAGTTTTGACAGCA 57.268 40.909 0.00 0.00 0.00 4.41
537 539 5.962822 ACGTTACGTGCACGAGATTTCGA 62.963 47.826 42.94 16.81 43.57 3.71
538 540 3.779012 ACGTTACGTGCACGAGATTTCG 61.779 50.000 42.94 32.47 45.14 3.46
539 541 1.717645 ACGTTACGTGCACGAGATTTC 59.282 47.619 42.94 23.50 43.02 2.17
540 542 1.774639 ACGTTACGTGCACGAGATTT 58.225 45.000 42.94 24.06 43.02 2.17
541 543 3.484524 ACGTTACGTGCACGAGATT 57.515 47.368 42.94 24.45 43.02 2.40
551 553 3.976942 GTCATGTTGTACTCACGTTACGT 59.023 43.478 3.95 3.95 42.36 3.57
552 554 4.224433 AGTCATGTTGTACTCACGTTACG 58.776 43.478 2.19 2.19 0.00 3.18
553 555 5.282310 CGTAGTCATGTTGTACTCACGTTAC 59.718 44.000 0.00 0.00 0.00 2.50
554 556 5.049474 ACGTAGTCATGTTGTACTCACGTTA 60.049 40.000 10.91 0.00 29.74 3.18
555 557 4.224433 CGTAGTCATGTTGTACTCACGTT 58.776 43.478 0.00 0.00 0.00 3.99
556 558 3.251729 ACGTAGTCATGTTGTACTCACGT 59.748 43.478 10.91 10.91 29.74 4.49
557 559 3.818387 ACGTAGTCATGTTGTACTCACG 58.182 45.455 0.00 3.35 29.74 4.35
558 560 6.376978 ACTAACGTAGTCATGTTGTACTCAC 58.623 40.000 0.00 0.00 45.00 3.51
559 561 6.564709 ACTAACGTAGTCATGTTGTACTCA 57.435 37.500 0.00 0.00 45.00 3.41
570 572 9.248279 ACTTTGGAGTTTGGACTAACGTAGTCA 62.248 40.741 19.74 8.95 44.28 3.41
571 573 6.957911 ACTTTGGAGTTTGGACTAACGTAGTC 60.958 42.308 13.51 13.51 42.95 2.59
572 574 4.942761 TTGGAGTTTGGACTAACGTAGT 57.057 40.909 0.00 0.00 42.86 2.73
573 575 5.295152 ACTTTGGAGTTTGGACTAACGTAG 58.705 41.667 0.00 0.00 35.88 3.51
574 576 5.280654 ACTTTGGAGTTTGGACTAACGTA 57.719 39.130 0.00 0.00 35.88 3.57
575 577 4.146745 ACTTTGGAGTTTGGACTAACGT 57.853 40.909 0.00 0.00 35.88 3.99
576 578 4.149396 CGTACTTTGGAGTTTGGACTAACG 59.851 45.833 0.00 0.00 35.88 3.18
577 579 5.052481 ACGTACTTTGGAGTTTGGACTAAC 58.948 41.667 0.00 0.00 35.88 2.34
578 580 5.280654 ACGTACTTTGGAGTTTGGACTAA 57.719 39.130 0.00 0.00 35.88 2.24
579 581 4.942761 ACGTACTTTGGAGTTTGGACTA 57.057 40.909 0.00 0.00 35.88 2.59
580 582 3.832615 ACGTACTTTGGAGTTTGGACT 57.167 42.857 0.00 0.00 39.32 3.85
581 583 3.426525 CGTACGTACTTTGGAGTTTGGAC 59.573 47.826 22.55 0.00 37.33 4.02
582 584 3.068024 ACGTACGTACTTTGGAGTTTGGA 59.932 43.478 21.41 0.00 37.33 3.53
583 585 3.182972 CACGTACGTACTTTGGAGTTTGG 59.817 47.826 22.34 5.82 37.33 3.28
584 586 3.182972 CCACGTACGTACTTTGGAGTTTG 59.817 47.826 27.36 11.39 37.33 2.93
585 587 3.181476 ACCACGTACGTACTTTGGAGTTT 60.181 43.478 33.41 18.16 37.33 2.66
586 588 2.362077 ACCACGTACGTACTTTGGAGTT 59.638 45.455 33.41 18.41 37.33 3.01
587 589 1.956477 ACCACGTACGTACTTTGGAGT 59.044 47.619 33.41 18.61 39.97 3.85
588 590 2.712057 ACCACGTACGTACTTTGGAG 57.288 50.000 33.41 18.08 33.56 3.86
589 591 3.146066 AGTACCACGTACGTACTTTGGA 58.854 45.455 33.41 21.14 42.98 3.53
590 592 3.559238 AGTACCACGTACGTACTTTGG 57.441 47.619 28.60 28.60 42.98 3.28
591 593 5.283060 AGTAGTACCACGTACGTACTTTG 57.717 43.478 23.13 17.95 42.98 2.77
592 594 5.063564 GCTAGTAGTACCACGTACGTACTTT 59.936 44.000 23.13 15.68 42.98 2.66
593 595 4.567159 GCTAGTAGTACCACGTACGTACTT 59.433 45.833 23.13 11.60 42.98 2.24
594 596 4.113354 GCTAGTAGTACCACGTACGTACT 58.887 47.826 22.34 22.13 46.29 2.73
595 597 4.113354 AGCTAGTAGTACCACGTACGTAC 58.887 47.826 22.34 15.95 43.05 3.67
596 598 4.386867 AGCTAGTAGTACCACGTACGTA 57.613 45.455 22.34 2.28 43.05 3.57
597 599 3.252974 AGCTAGTAGTACCACGTACGT 57.747 47.619 16.72 16.72 43.05 3.57
598 600 4.363999 ACTAGCTAGTAGTACCACGTACG 58.636 47.826 24.97 15.01 43.05 3.67
611 613 9.116067 CATCTCTCTTTTGTACTACTAGCTAGT 57.884 37.037 28.50 28.50 39.24 2.57
612 614 8.073768 GCATCTCTCTTTTGTACTACTAGCTAG 58.926 40.741 19.44 19.44 0.00 3.42
613 615 7.013464 GGCATCTCTCTTTTGTACTACTAGCTA 59.987 40.741 0.00 0.00 0.00 3.32
614 616 6.183360 GGCATCTCTCTTTTGTACTACTAGCT 60.183 42.308 0.00 0.00 0.00 3.32
615 617 5.980715 GGCATCTCTCTTTTGTACTACTAGC 59.019 44.000 0.00 0.00 0.00 3.42
616 618 7.101652 TGGCATCTCTCTTTTGTACTACTAG 57.898 40.000 0.00 0.00 0.00 2.57
617 619 7.178628 AGTTGGCATCTCTCTTTTGTACTACTA 59.821 37.037 0.00 0.00 0.00 1.82
618 620 6.014156 AGTTGGCATCTCTCTTTTGTACTACT 60.014 38.462 0.00 0.00 0.00 2.57
619 621 6.166982 AGTTGGCATCTCTCTTTTGTACTAC 58.833 40.000 0.00 0.00 0.00 2.73
620 622 6.360370 AGTTGGCATCTCTCTTTTGTACTA 57.640 37.500 0.00 0.00 0.00 1.82
621 623 5.234466 AGTTGGCATCTCTCTTTTGTACT 57.766 39.130 0.00 0.00 0.00 2.73
622 624 5.693814 CAAGTTGGCATCTCTCTTTTGTAC 58.306 41.667 0.00 0.00 0.00 2.90
623 625 4.216257 GCAAGTTGGCATCTCTCTTTTGTA 59.784 41.667 4.75 0.00 0.00 2.41
624 626 3.005155 GCAAGTTGGCATCTCTCTTTTGT 59.995 43.478 4.75 0.00 0.00 2.83
625 627 3.255149 AGCAAGTTGGCATCTCTCTTTTG 59.745 43.478 4.75 0.00 35.83 2.44
626 628 3.494332 AGCAAGTTGGCATCTCTCTTTT 58.506 40.909 4.75 0.00 35.83 2.27
627 629 3.151912 AGCAAGTTGGCATCTCTCTTT 57.848 42.857 4.75 0.00 35.83 2.52
628 630 2.875094 AGCAAGTTGGCATCTCTCTT 57.125 45.000 4.75 0.00 35.83 2.85
629 631 3.988976 TTAGCAAGTTGGCATCTCTCT 57.011 42.857 4.75 2.30 35.83 3.10
630 632 5.048434 AGTTTTTAGCAAGTTGGCATCTCTC 60.048 40.000 4.75 0.00 35.83 3.20
631 633 4.829492 AGTTTTTAGCAAGTTGGCATCTCT 59.171 37.500 4.75 0.00 35.83 3.10
632 634 5.126396 AGTTTTTAGCAAGTTGGCATCTC 57.874 39.130 4.75 0.00 35.83 2.75
633 635 5.163416 ACAAGTTTTTAGCAAGTTGGCATCT 60.163 36.000 4.75 0.00 40.19 2.90
634 636 5.049828 ACAAGTTTTTAGCAAGTTGGCATC 58.950 37.500 4.75 0.00 40.19 3.91
635 637 5.022282 ACAAGTTTTTAGCAAGTTGGCAT 57.978 34.783 4.75 0.00 40.19 4.40
636 638 4.464069 ACAAGTTTTTAGCAAGTTGGCA 57.536 36.364 4.75 0.00 40.19 4.92
637 639 5.794687 AAACAAGTTTTTAGCAAGTTGGC 57.205 34.783 4.75 0.00 40.19 4.52
662 664 4.164843 AGGTTGGCTGACTGACTAAAAA 57.835 40.909 0.00 0.00 0.00 1.94
663 665 3.857157 AGGTTGGCTGACTGACTAAAA 57.143 42.857 0.00 0.00 0.00 1.52
664 666 3.135712 TGAAGGTTGGCTGACTGACTAAA 59.864 43.478 0.00 0.00 0.00 1.85
665 667 2.703536 TGAAGGTTGGCTGACTGACTAA 59.296 45.455 0.00 0.00 0.00 2.24
666 668 2.300152 CTGAAGGTTGGCTGACTGACTA 59.700 50.000 0.00 0.00 0.00 2.59
667 669 1.071385 CTGAAGGTTGGCTGACTGACT 59.929 52.381 0.00 0.00 0.00 3.41
668 670 1.070758 TCTGAAGGTTGGCTGACTGAC 59.929 52.381 0.00 0.00 0.00 3.51
669 671 1.345741 CTCTGAAGGTTGGCTGACTGA 59.654 52.381 0.00 0.00 0.00 3.41
670 672 1.610102 CCTCTGAAGGTTGGCTGACTG 60.610 57.143 0.00 0.00 37.94 3.51
671 673 0.689623 CCTCTGAAGGTTGGCTGACT 59.310 55.000 0.00 0.00 37.94 3.41
672 674 0.957888 GCCTCTGAAGGTTGGCTGAC 60.958 60.000 0.00 0.00 45.34 3.51
673 675 1.376466 GCCTCTGAAGGTTGGCTGA 59.624 57.895 0.00 0.00 45.34 4.26
674 676 0.538057 TTGCCTCTGAAGGTTGGCTG 60.538 55.000 6.46 0.00 45.34 4.85
675 677 0.185901 TTTGCCTCTGAAGGTTGGCT 59.814 50.000 6.46 0.00 45.34 4.75
680 682 4.830573 GGCTTTGCCTCTGAAGGT 57.169 55.556 0.73 0.00 46.69 3.50
704 706 7.744059 ACGTATCTATCTATGACGATCAAGTG 58.256 38.462 0.00 0.00 37.00 3.16
705 707 7.908827 ACGTATCTATCTATGACGATCAAGT 57.091 36.000 0.00 0.00 37.00 3.16
706 708 9.056306 CAAACGTATCTATCTATGACGATCAAG 57.944 37.037 0.00 0.00 37.00 3.02
707 709 8.021396 CCAAACGTATCTATCTATGACGATCAA 58.979 37.037 0.00 0.00 37.00 2.57
708 710 7.361799 CCCAAACGTATCTATCTATGACGATCA 60.362 40.741 0.00 0.00 37.00 2.92
709 711 6.967767 CCCAAACGTATCTATCTATGACGATC 59.032 42.308 0.00 0.00 37.00 3.69
716 718 7.446625 AGTCGTAACCCAAACGTATCTATCTAT 59.553 37.037 0.00 0.00 41.08 1.98
723 725 3.181527 GCAAGTCGTAACCCAAACGTATC 60.182 47.826 0.00 0.00 41.08 2.24
725 727 2.134346 GCAAGTCGTAACCCAAACGTA 58.866 47.619 0.00 0.00 41.08 3.57
726 728 0.939419 GCAAGTCGTAACCCAAACGT 59.061 50.000 0.00 0.00 41.08 3.99
727 729 0.111001 CGCAAGTCGTAACCCAAACG 60.111 55.000 0.00 0.00 41.64 3.60
728 730 1.070376 GTCGCAAGTCGTAACCCAAAC 60.070 52.381 0.00 0.00 39.67 2.93
736 738 0.949397 AGTGTCAGTCGCAAGTCGTA 59.051 50.000 0.00 0.00 39.67 3.43
766 768 6.124088 AGAGCGTCCAATTTATAGCAAAAG 57.876 37.500 0.00 0.00 0.00 2.27
836 847 0.906756 TGGAGCTGGAGGTGGAAGAG 60.907 60.000 0.00 0.00 0.00 2.85
874 891 1.607178 CAAGCAAGCATGTGGGGGA 60.607 57.895 0.00 0.00 0.00 4.81
877 894 0.947180 GCAACAAGCAAGCATGTGGG 60.947 55.000 3.51 1.47 44.79 4.61
1149 1183 1.581934 CGAACTTGTTGGAGTCAGCA 58.418 50.000 0.00 0.00 32.26 4.41
1212 1267 2.203788 ACCCTCTCCTTGGCGTCA 60.204 61.111 0.00 0.00 0.00 4.35
1215 1270 3.358076 GACGACCCTCTCCTTGGCG 62.358 68.421 0.00 0.00 0.00 5.69
1327 1388 0.806102 CCCGTGTCGCCTATGAACAG 60.806 60.000 0.00 0.00 0.00 3.16
1374 1435 1.518792 GCCGGCGAGGAAGAAGTAC 60.519 63.158 12.58 0.00 45.00 2.73
1440 2409 3.883744 CTCCGTCACACCAGGCCAC 62.884 68.421 5.01 0.00 0.00 5.01
1441 2410 3.625897 CTCCGTCACACCAGGCCA 61.626 66.667 5.01 0.00 0.00 5.36
1442 2411 4.394712 CCTCCGTCACACCAGGCC 62.395 72.222 0.00 0.00 0.00 5.19
1443 2412 3.302347 CTCCTCCGTCACACCAGGC 62.302 68.421 0.00 0.00 0.00 4.85
1444 2413 2.973899 CTCCTCCGTCACACCAGG 59.026 66.667 0.00 0.00 0.00 4.45
1445 2414 2.262915 GCTCCTCCGTCACACCAG 59.737 66.667 0.00 0.00 0.00 4.00
1814 2787 2.689575 GAACCGTGGCACAACGAACG 62.690 60.000 19.09 1.02 44.16 3.95
1868 2842 0.611896 TGATCAGCGAGACCCACTCA 60.612 55.000 0.00 0.00 45.14 3.41
1912 2886 0.094046 GCATTGCGCATTTGTCAAGC 59.906 50.000 12.75 0.00 41.79 4.01
1926 2907 7.758076 ACAATCATCAGTACAAGATTTGCATTG 59.242 33.333 0.00 0.00 0.00 2.82
1950 2937 1.142060 ACACAAGGGACATCGGAAACA 59.858 47.619 0.00 0.00 0.00 2.83
1968 2957 4.794648 GCCGGCCTGCCATGTACA 62.795 66.667 18.11 0.00 35.37 2.90
2013 3002 0.461339 GAGTCAGGCCGCCGAAAATA 60.461 55.000 3.05 0.00 0.00 1.40
2191 3385 0.389296 CCAAGTGATACACGTCGCCA 60.389 55.000 0.00 0.00 39.64 5.69
2208 3402 1.343142 ACAGCGTACAATCACAGACCA 59.657 47.619 0.00 0.00 0.00 4.02
2268 3464 1.138859 CCATCAATACAGAGGCCGTGA 59.861 52.381 14.49 3.50 0.00 4.35
2320 3859 9.287373 TCCCTAAAAACAACTTATTCACGTAAT 57.713 29.630 0.00 0.00 0.00 1.89
2502 4073 3.000041 TGTAGCAGTAAACCAGCAATCG 59.000 45.455 0.00 0.00 0.00 3.34
2510 4081 2.222445 CACCAACGTGTAGCAGTAAACC 59.778 50.000 0.00 0.00 35.10 3.27
2561 4151 4.203160 CGCGCGTATCATGATCTAGTAATG 59.797 45.833 24.19 0.00 0.00 1.90
2644 4234 2.158711 GCTCACATGATTGGAGGGATCA 60.159 50.000 0.00 0.00 37.86 2.92
2713 4304 5.567138 ACTAAAGCCTTTACATGCATGTC 57.433 39.130 34.54 20.05 41.97 3.06
2771 4362 5.983540 TGGGTTTCTACAACTGCAAATTTT 58.016 33.333 0.00 0.00 0.00 1.82
2801 4392 1.143073 ACCCCGCATCCTAAATTCCTC 59.857 52.381 0.00 0.00 0.00 3.71
2868 4459 0.526739 GGTTTCACAGCGGCGTTTTT 60.527 50.000 9.37 0.00 0.00 1.94
2874 4465 3.670377 GTGGGGTTTCACAGCGGC 61.670 66.667 0.00 0.00 37.57 6.53
2878 4469 1.676006 GTTCAGTGTGGGGTTTCACAG 59.324 52.381 0.00 0.00 46.72 3.66
2891 4482 8.124586 CAAGTCTTGCTACTATATGTTCAGTG 57.875 38.462 0.00 0.00 0.00 3.66
2933 4524 2.978156 TCTTGGCTGAACATTCCCTT 57.022 45.000 0.00 0.00 0.00 3.95
2934 4525 3.463048 AATCTTGGCTGAACATTCCCT 57.537 42.857 0.00 0.00 0.00 4.20
2936 4527 6.319658 TCAGATAAATCTTGGCTGAACATTCC 59.680 38.462 0.00 0.00 34.22 3.01
2937 4528 7.325660 TCAGATAAATCTTGGCTGAACATTC 57.674 36.000 0.00 0.00 34.22 2.67
2939 4530 7.707624 TTTCAGATAAATCTTGGCTGAACAT 57.292 32.000 0.00 0.00 43.06 2.71
2940 4531 7.523293 TTTTCAGATAAATCTTGGCTGAACA 57.477 32.000 0.00 0.00 43.06 3.18
2941 4532 7.062722 GCTTTTTCAGATAAATCTTGGCTGAAC 59.937 37.037 0.00 0.00 43.06 3.18
2943 4534 6.435277 AGCTTTTTCAGATAAATCTTGGCTGA 59.565 34.615 0.00 0.00 34.22 4.26
2944 4535 6.530534 CAGCTTTTTCAGATAAATCTTGGCTG 59.469 38.462 8.90 8.90 34.22 4.85
2945 4536 6.350780 CCAGCTTTTTCAGATAAATCTTGGCT 60.351 38.462 0.00 0.00 34.22 4.75
2946 4537 5.809051 CCAGCTTTTTCAGATAAATCTTGGC 59.191 40.000 0.00 0.00 34.22 4.52
2947 4538 7.161773 TCCAGCTTTTTCAGATAAATCTTGG 57.838 36.000 0.00 0.00 34.22 3.61
2985 4576 6.177610 AGGCATTGCAATTTCAGATTTCATT 58.822 32.000 9.83 0.00 0.00 2.57
2987 4578 5.155278 AGGCATTGCAATTTCAGATTTCA 57.845 34.783 9.83 0.00 0.00 2.69
3037 4628 4.262463 GGTAGTGGATCAGTTGTGACTTCA 60.262 45.833 0.00 0.00 34.75 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.