Multiple sequence alignment - TraesCS5D01G360400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G360400 chr5D 100.000 4188 0 0 1 4188 440161879 440166066 0.000000e+00 7734.0
1 TraesCS5D01G360400 chr5D 90.354 3390 208 57 1 3324 42018335 42021671 0.000000e+00 4338.0
2 TraesCS5D01G360400 chr5D 94.495 218 12 0 3966 4183 127069200 127068983 1.870000e-88 337.0
3 TraesCS5D01G360400 chr5D 94.444 216 12 0 3968 4183 385071856 385072071 2.410000e-87 333.0
4 TraesCS5D01G360400 chr5D 88.372 86 8 2 3316 3401 42021700 42021783 7.410000e-18 102.0
5 TraesCS5D01G360400 chr5B 95.402 3980 146 10 1 3967 535112791 535116746 0.000000e+00 6301.0
6 TraesCS5D01G360400 chr5B 90.915 3357 200 54 1 3321 36721981 36725268 0.000000e+00 4412.0
7 TraesCS5D01G360400 chr5B 96.270 697 24 2 1 697 36766176 36765482 0.000000e+00 1142.0
8 TraesCS5D01G360400 chr5B 82.020 901 104 34 2449 3324 36745965 36745098 0.000000e+00 713.0
9 TraesCS5D01G360400 chr5B 94.091 220 12 1 3965 4183 557797619 557797838 2.410000e-87 333.0
10 TraesCS5D01G360400 chr5B 83.553 304 20 15 1275 1578 36765233 36764960 1.490000e-64 257.0
11 TraesCS5D01G360400 chr5B 92.500 80 6 0 1678 1757 36764965 36764886 9.510000e-22 115.0
12 TraesCS5D01G360400 chr5A 95.768 3757 120 17 1 3750 555772220 555775944 0.000000e+00 6021.0
13 TraesCS5D01G360400 chr5A 89.118 3391 229 75 1 3324 30406028 30409345 0.000000e+00 4089.0
14 TraesCS5D01G360400 chr5A 90.826 218 19 1 3752 3969 555780995 555781211 1.470000e-74 291.0
15 TraesCS5D01G360400 chr5A 90.123 81 6 2 3316 3396 30409373 30409451 2.060000e-18 104.0
16 TraesCS5D01G360400 chr4A 95.370 216 10 0 3968 4183 584933308 584933093 1.110000e-90 344.0
17 TraesCS5D01G360400 chr3B 94.931 217 10 1 3968 4183 223277132 223277348 5.190000e-89 339.0
18 TraesCS5D01G360400 chr3A 94.495 218 12 0 3966 4183 570412950 570412733 1.870000e-88 337.0
19 TraesCS5D01G360400 chr4B 94.470 217 11 1 3968 4183 62342331 62342115 2.410000e-87 333.0
20 TraesCS5D01G360400 chr4B 78.302 106 19 3 3531 3633 553610993 553610889 9.720000e-07 65.8
21 TraesCS5D01G360400 chr3D 93.607 219 14 0 3965 4183 240224720 240224938 1.120000e-85 327.0
22 TraesCS5D01G360400 chr2A 93.243 222 15 0 3962 4183 20010733 20010512 1.120000e-85 327.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G360400 chr5D 440161879 440166066 4187 False 7734.000000 7734 100.000000 1 4188 1 chr5D.!!$F2 4187
1 TraesCS5D01G360400 chr5D 42018335 42021783 3448 False 2220.000000 4338 89.363000 1 3401 2 chr5D.!!$F3 3400
2 TraesCS5D01G360400 chr5B 535112791 535116746 3955 False 6301.000000 6301 95.402000 1 3967 1 chr5B.!!$F2 3966
3 TraesCS5D01G360400 chr5B 36721981 36725268 3287 False 4412.000000 4412 90.915000 1 3321 1 chr5B.!!$F1 3320
4 TraesCS5D01G360400 chr5B 36745098 36745965 867 True 713.000000 713 82.020000 2449 3324 1 chr5B.!!$R1 875
5 TraesCS5D01G360400 chr5B 36764886 36766176 1290 True 504.666667 1142 90.774333 1 1757 3 chr5B.!!$R2 1756
6 TraesCS5D01G360400 chr5A 555772220 555775944 3724 False 6021.000000 6021 95.768000 1 3750 1 chr5A.!!$F1 3749
7 TraesCS5D01G360400 chr5A 30406028 30409451 3423 False 2096.500000 4089 89.620500 1 3396 2 chr5A.!!$F3 3395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 938 0.107066 CATGCTCATACCCCTGCACA 60.107 55.0 0.00 0.0 38.29 4.57 F
1320 1434 1.416813 CTAGCTGCGCTCGTTCTTGG 61.417 60.0 9.73 0.0 40.44 3.61 F
1712 1856 0.035317 TTGCTGTGCTCGTCTTCCAT 59.965 50.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 1856 0.171231 CGAGCCACGAGATGAAGACA 59.829 55.000 0.00 0.0 45.77 3.41 R
2922 3090 1.215173 CCTATGATCAAGCCCCACCAA 59.785 52.381 0.00 0.0 0.00 3.67 R
3420 3688 0.039074 GCAGGGTCCATATCGACTCG 60.039 60.000 0.34 0.0 38.36 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 1.063417 CAGGGGGATTTGGAATCAGCT 60.063 52.381 3.39 0.00 0.00 4.24
204 205 5.163478 ACAGAGCTTGTGAAGAAAATGCTTT 60.163 36.000 4.14 0.00 38.99 3.51
269 270 4.946478 ACATAGATACTGTGAGAAGGGC 57.054 45.455 0.00 0.00 0.00 5.19
375 376 9.057089 AGAAGCTATGTGCATTAGGTAAAATAC 57.943 33.333 10.58 0.00 45.94 1.89
735 835 7.463544 TGATTGTTAGAAACAGATGCATTACG 58.536 34.615 0.00 0.00 43.27 3.18
835 938 0.107066 CATGCTCATACCCCTGCACA 60.107 55.000 0.00 0.00 38.29 4.57
850 953 3.127548 CCTGCACATGTCACCAACTTATC 59.872 47.826 0.00 0.00 0.00 1.75
1125 1238 3.869272 CTGTCGCGGCTGGCATTC 61.869 66.667 13.81 0.00 43.84 2.67
1225 1338 1.514678 GCAGATGTTCGTTGGCCACA 61.515 55.000 3.88 0.00 0.00 4.17
1320 1434 1.416813 CTAGCTGCGCTCGTTCTTGG 61.417 60.000 9.73 0.00 40.44 3.61
1376 1490 3.252701 ACGACGTCTTCTCACTTGTATGT 59.747 43.478 14.70 0.00 0.00 2.29
1450 1594 1.982938 GTGCGAGGAGGTACAGGGT 60.983 63.158 0.00 0.00 0.00 4.34
1712 1856 0.035317 TTGCTGTGCTCGTCTTCCAT 59.965 50.000 0.00 0.00 0.00 3.41
1713 1857 0.671472 TGCTGTGCTCGTCTTCCATG 60.671 55.000 0.00 0.00 0.00 3.66
1739 1883 1.956170 CTCGTGGCTCGCTGTGTTT 60.956 57.895 3.73 0.00 39.67 2.83
1850 1994 0.324943 GCCCAGCTTGTAAGGAGACA 59.675 55.000 0.00 0.00 0.00 3.41
1972 2116 7.174426 AGCCATTTCTAGTTAACTGTTTGGTAC 59.826 37.037 18.56 2.76 0.00 3.34
1980 2124 5.883673 AGTTAACTGTTTGGTACTTCTTGCA 59.116 36.000 7.48 0.00 0.00 4.08
2011 2155 1.368850 GCGTCGTTGTGTTCTTGCC 60.369 57.895 0.00 0.00 0.00 4.52
2030 2174 1.584724 CCAGGTTGGAGGTCTGGTAT 58.415 55.000 0.00 0.00 40.96 2.73
2072 2216 1.151810 TGGCTTCCTCCCCAACTCT 60.152 57.895 0.00 0.00 0.00 3.24
2150 2295 5.553123 TGTTATAGTTACACACTGGTTGGG 58.447 41.667 0.00 0.00 35.97 4.12
2167 2312 6.074648 TGGTTGGGAGTTTTAATGTCTGATT 58.925 36.000 0.00 0.00 0.00 2.57
2300 2447 1.547372 GCCAGGTCAGTGCAAATGAAT 59.453 47.619 4.53 0.00 45.34 2.57
2552 2709 2.543802 CGAGGCCGTCATCGCTCTA 61.544 63.158 0.00 0.00 35.54 2.43
2654 2814 7.041721 TCATACAGTACCTAGTTTGCATTGAG 58.958 38.462 0.00 0.00 0.00 3.02
2747 2913 1.135721 GTCAACGTCGGGGCTTACTAT 59.864 52.381 0.00 0.00 0.00 2.12
2845 3011 4.437390 CCGCGCTAATTTCATCTTCAGTTT 60.437 41.667 5.56 0.00 0.00 2.66
2922 3090 4.746466 TGTTTGTGGTAATTCAGGGGATT 58.254 39.130 0.00 0.00 0.00 3.01
3091 3271 1.097232 TGGCAATGACACAGCTATGC 58.903 50.000 0.00 0.00 0.00 3.14
3278 3510 2.747989 GCCTAACTTTACCAAGTGGCTC 59.252 50.000 8.51 0.00 43.90 4.70
3329 3597 5.240891 TGAAACTCAGATGATGGACTTGTC 58.759 41.667 0.00 0.00 0.00 3.18
3388 3656 8.477419 ACTAGAAATGGTTTGATTTCTTGGAA 57.523 30.769 12.42 0.00 46.14 3.53
3402 3670 5.751243 TTCTTGGAACTCTTACACTTTGC 57.249 39.130 0.00 0.00 0.00 3.68
3420 3688 1.074405 TGCTGATGCCCCCAGATTATC 59.926 52.381 0.00 0.00 38.71 1.75
3503 3772 2.118076 ATGTTGTGGGCTGGTGGG 59.882 61.111 0.00 0.00 0.00 4.61
3684 3954 6.482308 ACAAAACTACACTATTCACACCTGAC 59.518 38.462 0.00 0.00 0.00 3.51
3689 3959 3.057456 ACACTATTCACACCTGACTCGTC 60.057 47.826 0.00 0.00 0.00 4.20
3690 3960 2.492484 ACTATTCACACCTGACTCGTCC 59.508 50.000 0.00 0.00 0.00 4.79
3707 3977 3.687698 TCGTCCCTTTCGAATTTGATTCC 59.312 43.478 0.00 0.00 35.89 3.01
3750 4020 1.747745 GCAACCGGACCATGGGTAC 60.748 63.158 18.09 7.00 35.25 3.34
3751 4021 1.988015 CAACCGGACCATGGGTACT 59.012 57.895 18.09 0.00 35.25 2.73
3793 4063 1.342674 ACTGATGAAAGGCCATGGCAT 60.343 47.619 36.56 29.47 44.11 4.40
3804 4074 1.116308 CCATGGCATTGCATCCAAGA 58.884 50.000 11.39 0.00 35.75 3.02
3808 4078 0.179092 GGCATTGCATCCAAGAAGGC 60.179 55.000 11.39 0.00 37.29 4.35
3809 4079 0.822164 GCATTGCATCCAAGAAGGCT 59.178 50.000 3.15 0.00 37.29 4.58
3813 4083 1.683943 TGCATCCAAGAAGGCTATGC 58.316 50.000 10.07 10.07 44.12 3.14
3826 4096 1.450531 GCTATGCCATCCACAGGTGC 61.451 60.000 0.00 0.00 0.00 5.01
3850 4120 3.117587 ACCTCTAGTAGCATCGGTAAGGT 60.118 47.826 0.00 0.00 0.00 3.50
3856 4126 3.767673 AGTAGCATCGGTAAGGTGAGAAA 59.232 43.478 0.00 0.00 30.86 2.52
3873 4143 3.995506 AAGGATTTCGCCCCTGCCG 62.996 63.158 0.00 0.00 32.12 5.69
3893 4163 5.240623 TGCCGTTGACAACTCTTCAATTATT 59.759 36.000 16.02 0.00 35.47 1.40
3894 4164 6.428465 TGCCGTTGACAACTCTTCAATTATTA 59.572 34.615 16.02 0.00 35.47 0.98
3896 4166 7.481798 GCCGTTGACAACTCTTCAATTATTAAG 59.518 37.037 16.02 0.00 35.47 1.85
3921 4191 4.908601 TGTCAATCCTACAACCATGAGT 57.091 40.909 0.00 0.00 0.00 3.41
3960 4231 4.026393 TCACTTGACGTGTACAATTCGTTG 60.026 41.667 10.82 6.14 44.16 4.10
3967 4238 5.042593 ACGTGTACAATTCGTTGTGACTTA 58.957 37.500 0.00 0.00 36.44 2.24
3968 4239 5.174398 ACGTGTACAATTCGTTGTGACTTAG 59.826 40.000 0.00 0.00 36.44 2.18
3969 4240 5.388061 CGTGTACAATTCGTTGTGACTTAGG 60.388 44.000 0.00 0.00 36.44 2.69
3970 4241 4.449743 TGTACAATTCGTTGTGACTTAGGC 59.550 41.667 0.00 0.00 36.44 3.93
3971 4242 3.740115 ACAATTCGTTGTGACTTAGGCT 58.260 40.909 0.00 0.00 33.23 4.58
3972 4243 4.890088 ACAATTCGTTGTGACTTAGGCTA 58.110 39.130 0.00 0.00 33.23 3.93
3973 4244 4.689345 ACAATTCGTTGTGACTTAGGCTAC 59.311 41.667 0.00 0.00 33.23 3.58
3974 4245 4.803098 ATTCGTTGTGACTTAGGCTACT 57.197 40.909 0.00 0.00 0.00 2.57
3975 4246 4.595762 TTCGTTGTGACTTAGGCTACTT 57.404 40.909 0.00 0.00 0.00 2.24
3976 4247 4.170292 TCGTTGTGACTTAGGCTACTTC 57.830 45.455 0.00 0.00 0.00 3.01
3977 4248 3.057033 TCGTTGTGACTTAGGCTACTTCC 60.057 47.826 0.00 0.00 0.00 3.46
3978 4249 3.305813 CGTTGTGACTTAGGCTACTTCCA 60.306 47.826 0.00 0.00 0.00 3.53
3979 4250 4.638304 GTTGTGACTTAGGCTACTTCCAA 58.362 43.478 0.00 0.00 0.00 3.53
3980 4251 5.246307 GTTGTGACTTAGGCTACTTCCAAT 58.754 41.667 0.00 0.00 0.00 3.16
3981 4252 4.832248 TGTGACTTAGGCTACTTCCAATG 58.168 43.478 0.00 0.00 0.00 2.82
3982 4253 3.623510 GTGACTTAGGCTACTTCCAATGC 59.376 47.826 0.00 0.00 0.00 3.56
3983 4254 3.263170 TGACTTAGGCTACTTCCAATGCA 59.737 43.478 0.00 0.00 0.00 3.96
3984 4255 4.080356 TGACTTAGGCTACTTCCAATGCAT 60.080 41.667 0.00 0.00 0.00 3.96
3985 4256 4.860022 ACTTAGGCTACTTCCAATGCATT 58.140 39.130 5.99 5.99 0.00 3.56
3986 4257 4.641989 ACTTAGGCTACTTCCAATGCATTG 59.358 41.667 28.91 28.91 37.52 2.82
4002 4273 3.770263 CATTGGTGCTTACATGAGGTG 57.230 47.619 0.00 0.00 0.00 4.00
4003 4274 1.533625 TTGGTGCTTACATGAGGTGC 58.466 50.000 0.00 0.00 0.00 5.01
4004 4275 0.692476 TGGTGCTTACATGAGGTGCT 59.308 50.000 0.00 0.00 0.00 4.40
4005 4276 1.905894 TGGTGCTTACATGAGGTGCTA 59.094 47.619 0.00 0.00 0.00 3.49
4006 4277 2.304470 TGGTGCTTACATGAGGTGCTAA 59.696 45.455 0.00 0.00 0.00 3.09
4007 4278 2.939103 GGTGCTTACATGAGGTGCTAAG 59.061 50.000 0.00 0.00 0.00 2.18
4008 4279 2.352960 GTGCTTACATGAGGTGCTAAGC 59.647 50.000 13.71 13.71 41.97 3.09
4009 4280 2.027285 TGCTTACATGAGGTGCTAAGCA 60.027 45.455 17.49 17.49 44.97 3.91
4025 4296 7.867445 TGCTAAGCACATTAAAAACTTTAGC 57.133 32.000 13.23 13.23 31.71 3.09
4026 4297 7.429633 TGCTAAGCACATTAAAAACTTTAGCA 58.570 30.769 16.49 16.49 31.71 3.49
4027 4298 7.594758 TGCTAAGCACATTAAAAACTTTAGCAG 59.405 33.333 16.49 0.00 31.71 4.24
4028 4299 6.769608 AAGCACATTAAAAACTTTAGCAGC 57.230 33.333 0.00 0.00 0.00 5.25
4029 4300 6.089249 AGCACATTAAAAACTTTAGCAGCT 57.911 33.333 0.00 0.00 0.00 4.24
4030 4301 7.214467 AGCACATTAAAAACTTTAGCAGCTA 57.786 32.000 0.00 0.00 0.00 3.32
4031 4302 7.657336 AGCACATTAAAAACTTTAGCAGCTAA 58.343 30.769 11.07 11.07 0.00 3.09
4032 4303 8.141268 AGCACATTAAAAACTTTAGCAGCTAAA 58.859 29.630 23.44 23.44 35.12 1.85
4038 4309 1.393603 CTTTAGCAGCTAAAGCCCCC 58.606 55.000 32.43 0.00 43.82 5.40
4039 4310 0.701731 TTTAGCAGCTAAAGCCCCCA 59.298 50.000 21.60 0.10 43.38 4.96
4040 4311 0.701731 TTAGCAGCTAAAGCCCCCAA 59.298 50.000 12.75 0.00 43.38 4.12
4041 4312 0.926293 TAGCAGCTAAAGCCCCCAAT 59.074 50.000 0.00 0.00 43.38 3.16
4042 4313 0.685458 AGCAGCTAAAGCCCCCAATG 60.685 55.000 0.00 0.00 43.38 2.82
4043 4314 1.818555 CAGCTAAAGCCCCCAATGC 59.181 57.895 0.00 0.00 43.38 3.56
4044 4315 0.971959 CAGCTAAAGCCCCCAATGCA 60.972 55.000 0.00 0.00 43.38 3.96
4045 4316 0.031817 AGCTAAAGCCCCCAATGCAT 60.032 50.000 0.00 0.00 43.38 3.96
4046 4317 1.217689 AGCTAAAGCCCCCAATGCATA 59.782 47.619 0.00 0.00 43.38 3.14
4047 4318 1.615392 GCTAAAGCCCCCAATGCATAG 59.385 52.381 0.00 0.00 34.31 2.23
4048 4319 2.242043 CTAAAGCCCCCAATGCATAGG 58.758 52.381 0.00 3.90 0.00 2.57
4049 4320 0.339510 AAAGCCCCCAATGCATAGGT 59.660 50.000 13.23 0.00 0.00 3.08
4050 4321 0.397535 AAGCCCCCAATGCATAGGTG 60.398 55.000 13.23 4.69 0.00 4.00
4065 4336 5.046910 CATAGGTGCTTAACTTGTTGGTG 57.953 43.478 0.00 0.00 0.00 4.17
4066 4337 1.681264 AGGTGCTTAACTTGTTGGTGC 59.319 47.619 0.00 0.00 0.00 5.01
4067 4338 1.681264 GGTGCTTAACTTGTTGGTGCT 59.319 47.619 0.00 0.00 0.00 4.40
4068 4339 2.882137 GGTGCTTAACTTGTTGGTGCTA 59.118 45.455 0.00 0.00 0.00 3.49
4069 4340 3.316868 GGTGCTTAACTTGTTGGTGCTAA 59.683 43.478 0.00 0.00 0.00 3.09
4070 4341 4.537015 GTGCTTAACTTGTTGGTGCTAAG 58.463 43.478 0.00 0.00 0.00 2.18
4071 4342 3.004315 TGCTTAACTTGTTGGTGCTAAGC 59.996 43.478 8.58 8.58 40.91 3.09
4072 4343 3.004315 GCTTAACTTGTTGGTGCTAAGCA 59.996 43.478 9.96 0.00 40.47 3.91
4073 4344 4.321230 GCTTAACTTGTTGGTGCTAAGCAT 60.321 41.667 9.96 0.00 41.91 3.79
4074 4345 3.923017 AACTTGTTGGTGCTAAGCATC 57.077 42.857 0.00 0.00 41.91 3.91
4075 4346 2.162681 ACTTGTTGGTGCTAAGCATCC 58.837 47.619 0.00 0.00 39.18 3.51
4076 4347 2.224867 ACTTGTTGGTGCTAAGCATCCT 60.225 45.455 0.00 0.00 39.18 3.24
4077 4348 2.584835 TGTTGGTGCTAAGCATCCTT 57.415 45.000 0.00 0.00 39.18 3.36
4078 4349 2.875296 TGTTGGTGCTAAGCATCCTTT 58.125 42.857 0.00 0.00 39.18 3.11
4079 4350 4.027674 TGTTGGTGCTAAGCATCCTTTA 57.972 40.909 0.00 0.00 39.18 1.85
4080 4351 4.599041 TGTTGGTGCTAAGCATCCTTTAT 58.401 39.130 0.00 0.00 39.18 1.40
4081 4352 5.016173 TGTTGGTGCTAAGCATCCTTTATT 58.984 37.500 0.00 0.00 39.18 1.40
4082 4353 5.480073 TGTTGGTGCTAAGCATCCTTTATTT 59.520 36.000 0.00 0.00 39.18 1.40
4083 4354 6.661377 TGTTGGTGCTAAGCATCCTTTATTTA 59.339 34.615 0.00 0.00 39.18 1.40
4084 4355 7.177568 TGTTGGTGCTAAGCATCCTTTATTTAA 59.822 33.333 0.00 0.00 39.18 1.52
4085 4356 7.896383 TGGTGCTAAGCATCCTTTATTTAAT 57.104 32.000 0.00 0.00 39.18 1.40
4086 4357 8.305046 TGGTGCTAAGCATCCTTTATTTAATT 57.695 30.769 0.00 0.00 39.18 1.40
4087 4358 9.415008 TGGTGCTAAGCATCCTTTATTTAATTA 57.585 29.630 0.00 0.00 39.18 1.40
4111 4382 6.826893 TTTTGCAACTAAAGTTCTTCATGC 57.173 33.333 0.00 0.00 35.83 4.06
4112 4383 5.512753 TTGCAACTAAAGTTCTTCATGCA 57.487 34.783 0.00 0.00 35.83 3.96
4113 4384 5.710513 TGCAACTAAAGTTCTTCATGCAT 57.289 34.783 0.00 0.00 35.83 3.96
4114 4385 6.088016 TGCAACTAAAGTTCTTCATGCATT 57.912 33.333 0.00 0.00 35.83 3.56
4115 4386 5.921976 TGCAACTAAAGTTCTTCATGCATTG 59.078 36.000 0.00 0.00 35.83 2.82
4116 4387 5.346822 GCAACTAAAGTTCTTCATGCATTGG 59.653 40.000 0.00 0.00 35.83 3.16
4117 4388 6.449698 CAACTAAAGTTCTTCATGCATTGGT 58.550 36.000 0.00 0.00 35.83 3.67
4118 4389 6.017400 ACTAAAGTTCTTCATGCATTGGTG 57.983 37.500 0.00 0.00 0.00 4.17
4119 4390 3.947910 AAGTTCTTCATGCATTGGTGG 57.052 42.857 0.00 0.00 0.00 4.61
4120 4391 2.173519 AGTTCTTCATGCATTGGTGGG 58.826 47.619 0.00 0.00 0.00 4.61
4121 4392 2.170166 GTTCTTCATGCATTGGTGGGA 58.830 47.619 0.00 0.00 0.00 4.37
4122 4393 2.762327 GTTCTTCATGCATTGGTGGGAT 59.238 45.455 0.00 0.00 0.00 3.85
4123 4394 3.104519 TCTTCATGCATTGGTGGGATT 57.895 42.857 0.00 0.00 0.00 3.01
4124 4395 3.025978 TCTTCATGCATTGGTGGGATTC 58.974 45.455 0.00 0.00 0.00 2.52
4125 4396 2.832643 TCATGCATTGGTGGGATTCT 57.167 45.000 0.00 0.00 0.00 2.40
4126 4397 3.104519 TCATGCATTGGTGGGATTCTT 57.895 42.857 0.00 0.00 0.00 2.52
4127 4398 3.025978 TCATGCATTGGTGGGATTCTTC 58.974 45.455 0.00 0.00 0.00 2.87
4128 4399 1.851304 TGCATTGGTGGGATTCTTCC 58.149 50.000 0.00 0.00 41.77 3.46
4129 4400 1.076841 TGCATTGGTGGGATTCTTCCA 59.923 47.619 0.00 0.00 44.60 3.53
4130 4401 2.292389 TGCATTGGTGGGATTCTTCCAT 60.292 45.455 0.00 0.00 44.60 3.41
4131 4402 2.767960 GCATTGGTGGGATTCTTCCATT 59.232 45.455 0.00 0.00 44.60 3.16
4132 4403 3.198417 GCATTGGTGGGATTCTTCCATTT 59.802 43.478 0.00 0.00 44.60 2.32
4133 4404 4.405358 GCATTGGTGGGATTCTTCCATTTA 59.595 41.667 0.00 0.00 44.60 1.40
4134 4405 5.104982 GCATTGGTGGGATTCTTCCATTTAA 60.105 40.000 0.00 0.00 44.60 1.52
4135 4406 6.408434 GCATTGGTGGGATTCTTCCATTTAAT 60.408 38.462 0.00 0.00 44.60 1.40
4136 4407 7.567458 CATTGGTGGGATTCTTCCATTTAATT 58.433 34.615 0.00 0.00 44.60 1.40
4137 4408 6.543430 TGGTGGGATTCTTCCATTTAATTG 57.457 37.500 0.00 0.00 44.60 2.32
4138 4409 6.022315 TGGTGGGATTCTTCCATTTAATTGT 58.978 36.000 0.00 0.00 44.60 2.71
4139 4410 6.500049 TGGTGGGATTCTTCCATTTAATTGTT 59.500 34.615 0.00 0.00 44.60 2.83
4140 4411 7.017056 TGGTGGGATTCTTCCATTTAATTGTTT 59.983 33.333 0.00 0.00 44.60 2.83
4141 4412 7.882791 GGTGGGATTCTTCCATTTAATTGTTTT 59.117 33.333 0.00 0.00 44.60 2.43
4142 4413 8.720562 GTGGGATTCTTCCATTTAATTGTTTTG 58.279 33.333 0.00 0.00 44.60 2.44
4143 4414 7.390162 TGGGATTCTTCCATTTAATTGTTTTGC 59.610 33.333 0.00 0.00 44.60 3.68
4144 4415 7.148255 GGGATTCTTCCATTTAATTGTTTTGCC 60.148 37.037 0.00 0.00 44.60 4.52
4145 4416 7.607607 GGATTCTTCCATTTAATTGTTTTGCCT 59.392 33.333 0.00 0.00 42.12 4.75
4146 4417 9.651913 GATTCTTCCATTTAATTGTTTTGCCTA 57.348 29.630 0.00 0.00 0.00 3.93
4147 4418 9.657419 ATTCTTCCATTTAATTGTTTTGCCTAG 57.343 29.630 0.00 0.00 0.00 3.02
4148 4419 7.610865 TCTTCCATTTAATTGTTTTGCCTAGG 58.389 34.615 3.67 3.67 0.00 3.02
4149 4420 6.926630 TCCATTTAATTGTTTTGCCTAGGT 57.073 33.333 11.31 0.00 0.00 3.08
4150 4421 7.309770 TCCATTTAATTGTTTTGCCTAGGTT 57.690 32.000 11.31 0.00 0.00 3.50
4151 4422 7.382898 TCCATTTAATTGTTTTGCCTAGGTTC 58.617 34.615 11.31 0.00 0.00 3.62
4152 4423 7.234577 TCCATTTAATTGTTTTGCCTAGGTTCT 59.765 33.333 11.31 0.00 0.00 3.01
4153 4424 7.545615 CCATTTAATTGTTTTGCCTAGGTTCTC 59.454 37.037 11.31 0.00 0.00 2.87
4154 4425 4.766404 AATTGTTTTGCCTAGGTTCTCG 57.234 40.909 11.31 0.00 0.00 4.04
4155 4426 2.922740 TGTTTTGCCTAGGTTCTCGT 57.077 45.000 11.31 0.00 0.00 4.18
4156 4427 4.339872 TTGTTTTGCCTAGGTTCTCGTA 57.660 40.909 11.31 0.00 0.00 3.43
4157 4428 3.656559 TGTTTTGCCTAGGTTCTCGTAC 58.343 45.455 11.31 1.08 0.00 3.67
4158 4429 3.322828 TGTTTTGCCTAGGTTCTCGTACT 59.677 43.478 11.31 0.00 0.00 2.73
4159 4430 4.202284 TGTTTTGCCTAGGTTCTCGTACTT 60.202 41.667 11.31 0.00 0.00 2.24
4160 4431 3.587797 TTGCCTAGGTTCTCGTACTTG 57.412 47.619 11.31 0.00 0.00 3.16
4161 4432 2.799017 TGCCTAGGTTCTCGTACTTGA 58.201 47.619 11.31 0.00 0.00 3.02
4162 4433 2.490903 TGCCTAGGTTCTCGTACTTGAC 59.509 50.000 11.31 0.00 0.00 3.18
4163 4434 2.490903 GCCTAGGTTCTCGTACTTGACA 59.509 50.000 11.31 0.00 0.00 3.58
4164 4435 3.130693 GCCTAGGTTCTCGTACTTGACAT 59.869 47.826 11.31 0.00 0.00 3.06
4165 4436 4.381718 GCCTAGGTTCTCGTACTTGACATT 60.382 45.833 11.31 0.00 0.00 2.71
4166 4437 5.103000 CCTAGGTTCTCGTACTTGACATTG 58.897 45.833 0.00 0.00 0.00 2.82
4167 4438 4.602340 AGGTTCTCGTACTTGACATTGT 57.398 40.909 0.00 0.00 0.00 2.71
4168 4439 4.957296 AGGTTCTCGTACTTGACATTGTT 58.043 39.130 0.00 0.00 0.00 2.83
4169 4440 5.365619 AGGTTCTCGTACTTGACATTGTTT 58.634 37.500 0.00 0.00 0.00 2.83
4170 4441 5.820947 AGGTTCTCGTACTTGACATTGTTTT 59.179 36.000 0.00 0.00 0.00 2.43
4171 4442 6.317893 AGGTTCTCGTACTTGACATTGTTTTT 59.682 34.615 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.009997 TGATTCCAAATCCCCCTGCT 58.990 50.000 0.00 0.00 0.00 4.24
74 75 4.780815 ACAAGTCATCCAACAAAGACAGA 58.219 39.130 0.00 0.00 33.56 3.41
204 205 6.901300 ACAAGTGTAGGGACAATTCCTCTATA 59.099 38.462 0.00 0.00 41.75 1.31
269 270 5.655488 AGATCGAGTAATTCTTCCACTGTG 58.345 41.667 0.00 0.00 0.00 3.66
375 376 4.431809 CTGAGGAGACTGTAAGCTTCATG 58.568 47.826 0.00 0.00 44.43 3.07
735 835 6.224584 AGAAAGTGAGTAAGCTTTCCAGTAC 58.775 40.000 3.20 0.00 46.92 2.73
835 938 4.079253 GGTTGTGGATAAGTTGGTGACAT 58.921 43.478 0.00 0.00 42.32 3.06
850 953 2.086869 CAGTCTATTGGCTGGTTGTGG 58.913 52.381 0.35 0.00 0.00 4.17
890 993 6.464222 TGTTCAGTAGTTGCAGCTAACTAAT 58.536 36.000 12.24 7.03 42.82 1.73
943 1056 2.580322 TCATTATGGACCAAGCCCTTGA 59.420 45.455 9.50 0.00 42.93 3.02
1260 1373 1.148273 GCCCTGGATGCCGATGTTA 59.852 57.895 0.00 0.00 0.00 2.41
1320 1434 9.900710 CATCACAAAGGACTATACTACATAGTC 57.099 37.037 13.59 13.59 45.91 2.59
1344 1458 4.167268 GAGAAGACGTCGTTTCTAAGCAT 58.833 43.478 17.24 0.00 33.97 3.79
1450 1594 1.039068 CTGGCAAACAACACCCATCA 58.961 50.000 0.00 0.00 0.00 3.07
1712 1856 0.171231 CGAGCCACGAGATGAAGACA 59.829 55.000 0.00 0.00 45.77 3.41
1713 1857 1.142778 GCGAGCCACGAGATGAAGAC 61.143 60.000 5.11 0.00 45.77 3.01
1739 1883 1.152694 AAGGCCAAAGCTGAGCACA 60.153 52.632 7.39 0.00 39.73 4.57
1769 1913 2.562298 CCAAGAGAAGCTCAGAGTCAGT 59.438 50.000 0.00 0.00 32.06 3.41
1972 2116 4.556135 CGCAAGACATAAACATGCAAGAAG 59.444 41.667 0.00 0.00 43.02 2.85
1980 2124 3.496884 ACAACGACGCAAGACATAAACAT 59.503 39.130 0.00 0.00 43.62 2.71
2030 2174 2.034939 CAGAAGCACAAATCCTTGCACA 59.965 45.455 0.00 0.00 41.48 4.57
2072 2216 5.417754 AGAGTGAATCAAGAGCAATCTCA 57.582 39.130 0.00 0.00 41.81 3.27
2300 2447 4.169264 TGGTATACATCCTGGTAGGTCTCA 59.831 45.833 5.01 0.00 36.53 3.27
2654 2814 3.751518 TCCAGGAGTTTAGTTCCTTTGC 58.248 45.455 0.00 0.00 42.40 3.68
2747 2913 1.608055 CAATCGGCAGCCCAATGATA 58.392 50.000 5.63 0.00 0.00 2.15
2854 3020 8.469200 CCTCTGGAAAAATATGTTGCAAGATAA 58.531 33.333 19.01 4.61 0.00 1.75
2922 3090 1.215173 CCTATGATCAAGCCCCACCAA 59.785 52.381 0.00 0.00 0.00 3.67
3084 3264 2.945080 AGCACATACATGGCATAGCT 57.055 45.000 0.00 0.35 0.00 3.32
3091 3271 4.769688 TCTCAACCTAAGCACATACATGG 58.230 43.478 0.00 0.00 0.00 3.66
3329 3597 7.255001 CCAGGGCTAATTAACCATTTAACTACG 60.255 40.741 7.21 0.00 29.77 3.51
3388 3656 3.077359 GGCATCAGCAAAGTGTAAGAGT 58.923 45.455 0.00 0.00 44.61 3.24
3402 3670 1.625315 TCGATAATCTGGGGGCATCAG 59.375 52.381 0.63 0.63 0.00 2.90
3420 3688 0.039074 GCAGGGTCCATATCGACTCG 60.039 60.000 0.34 0.00 38.36 4.18
3470 3739 1.401761 ACATGCTGGTGCTGACAAAA 58.598 45.000 0.00 0.00 40.48 2.44
3535 3805 5.620206 ACACATGTCCTATGAACAGTCAAA 58.380 37.500 0.00 0.00 37.30 2.69
3540 3810 5.965922 TGTAGACACATGTCCTATGAACAG 58.034 41.667 8.41 0.00 45.85 3.16
3605 3875 6.479660 TCATGCAGATTTGTCTTTTTGGTTTC 59.520 34.615 0.00 0.00 0.00 2.78
3615 3885 7.338703 ACACTATTCATTCATGCAGATTTGTCT 59.661 33.333 0.00 0.00 0.00 3.41
3684 3954 4.201822 GGAATCAAATTCGAAAGGGACGAG 60.202 45.833 0.00 0.00 40.72 4.18
3689 3959 3.013921 TCCGGAATCAAATTCGAAAGGG 58.986 45.455 0.00 0.00 40.17 3.95
3690 3960 3.485216 CGTCCGGAATCAAATTCGAAAGG 60.485 47.826 5.23 0.00 40.17 3.11
3750 4020 1.515020 CTCTTCGAGCACCAGGGAG 59.485 63.158 0.00 0.00 0.00 4.30
3751 4021 1.984570 CCTCTTCGAGCACCAGGGA 60.985 63.158 0.00 0.00 0.00 4.20
3778 4048 1.192803 TGCAATGCCATGGCCTTTCA 61.193 50.000 33.44 26.04 41.09 2.69
3793 4063 2.026641 GCATAGCCTTCTTGGATGCAA 58.973 47.619 0.00 0.00 42.41 4.08
3794 4064 1.683943 GCATAGCCTTCTTGGATGCA 58.316 50.000 0.00 0.00 42.41 3.96
3808 4078 0.820891 GGCACCTGTGGATGGCATAG 60.821 60.000 0.00 0.00 40.91 2.23
3809 4079 1.227102 GGCACCTGTGGATGGCATA 59.773 57.895 0.00 0.00 40.91 3.14
3813 4083 2.361610 GGTGGCACCTGTGGATGG 60.362 66.667 29.22 0.00 34.73 3.51
3826 4096 1.693627 ACCGATGCTACTAGAGGTGG 58.306 55.000 0.00 0.00 0.00 4.61
3836 4106 3.132289 CCTTTCTCACCTTACCGATGCTA 59.868 47.826 0.00 0.00 0.00 3.49
3850 4120 0.991920 AGGGGCGAAATCCTTTCTCA 59.008 50.000 0.00 0.00 37.52 3.27
3868 4138 1.581934 TGAAGAGTTGTCAACGGCAG 58.418 50.000 10.02 0.00 36.23 4.85
3893 4163 6.367374 TGGTTGTAGGATTGACATGTCTTA 57.633 37.500 25.55 14.46 0.00 2.10
3894 4164 5.241403 TGGTTGTAGGATTGACATGTCTT 57.759 39.130 25.55 13.76 0.00 3.01
3896 4166 5.185454 TCATGGTTGTAGGATTGACATGTC 58.815 41.667 19.27 19.27 36.52 3.06
3906 4176 6.068010 ACAAATCAAACTCATGGTTGTAGGA 58.932 36.000 0.00 0.00 38.29 2.94
3914 4184 8.127327 GTGATCTATGACAAATCAAACTCATGG 58.873 37.037 0.00 0.00 38.69 3.66
3921 4191 7.387673 ACGTCAAGTGATCTATGACAAATCAAA 59.612 33.333 19.14 0.00 42.76 2.69
3960 4231 3.623510 GCATTGGAAGTAGCCTAAGTCAC 59.376 47.826 0.00 0.00 0.00 3.67
3982 4253 2.159338 GCACCTCATGTAAGCACCAATG 60.159 50.000 0.00 0.00 0.00 2.82
3983 4254 2.094675 GCACCTCATGTAAGCACCAAT 58.905 47.619 0.00 0.00 0.00 3.16
3984 4255 1.073763 AGCACCTCATGTAAGCACCAA 59.926 47.619 0.00 0.00 0.00 3.67
3985 4256 0.692476 AGCACCTCATGTAAGCACCA 59.308 50.000 0.00 0.00 0.00 4.17
3986 4257 2.691409 TAGCACCTCATGTAAGCACC 57.309 50.000 0.00 0.00 0.00 5.01
3987 4258 2.352960 GCTTAGCACCTCATGTAAGCAC 59.647 50.000 15.05 0.00 41.99 4.40
3988 4259 2.027285 TGCTTAGCACCTCATGTAAGCA 60.027 45.455 17.49 17.49 45.42 3.91
3989 4260 2.632377 TGCTTAGCACCTCATGTAAGC 58.368 47.619 1.39 13.71 42.33 3.09
4001 4272 7.429633 TGCTAAAGTTTTTAATGTGCTTAGCA 58.570 30.769 1.39 1.39 35.60 3.49
4002 4273 7.410835 GCTGCTAAAGTTTTTAATGTGCTTAGC 60.411 37.037 0.00 0.00 0.00 3.09
4003 4274 7.809806 AGCTGCTAAAGTTTTTAATGTGCTTAG 59.190 33.333 0.00 0.00 0.00 2.18
4004 4275 7.657336 AGCTGCTAAAGTTTTTAATGTGCTTA 58.343 30.769 0.00 0.00 0.00 3.09
4005 4276 6.515832 AGCTGCTAAAGTTTTTAATGTGCTT 58.484 32.000 0.00 0.00 0.00 3.91
4006 4277 6.089249 AGCTGCTAAAGTTTTTAATGTGCT 57.911 33.333 0.00 0.00 0.00 4.40
4007 4278 7.867445 TTAGCTGCTAAAGTTTTTAATGTGC 57.133 32.000 19.13 0.00 0.00 4.57
4020 4291 0.701731 TGGGGGCTTTAGCTGCTAAA 59.298 50.000 27.63 27.63 41.70 1.85
4021 4292 0.701731 TTGGGGGCTTTAGCTGCTAA 59.298 50.000 17.67 17.67 41.70 3.09
4022 4293 0.926293 ATTGGGGGCTTTAGCTGCTA 59.074 50.000 5.02 5.02 41.70 3.49
4023 4294 0.685458 CATTGGGGGCTTTAGCTGCT 60.685 55.000 7.57 7.57 41.70 4.24
4024 4295 1.818555 CATTGGGGGCTTTAGCTGC 59.181 57.895 0.00 0.00 41.70 5.25
4025 4296 0.971959 TGCATTGGGGGCTTTAGCTG 60.972 55.000 0.00 0.00 41.70 4.24
4026 4297 0.031817 ATGCATTGGGGGCTTTAGCT 60.032 50.000 0.00 0.00 41.70 3.32
4027 4298 1.615392 CTATGCATTGGGGGCTTTAGC 59.385 52.381 3.54 0.00 41.14 3.09
4028 4299 2.242043 CCTATGCATTGGGGGCTTTAG 58.758 52.381 18.33 0.00 0.00 1.85
4029 4300 1.573376 ACCTATGCATTGGGGGCTTTA 59.427 47.619 27.42 0.00 0.00 1.85
4030 4301 0.339510 ACCTATGCATTGGGGGCTTT 59.660 50.000 27.42 6.06 0.00 3.51
4031 4302 0.397535 CACCTATGCATTGGGGGCTT 60.398 55.000 27.42 6.76 0.00 4.35
4032 4303 1.231068 CACCTATGCATTGGGGGCT 59.769 57.895 27.42 7.11 0.00 5.19
4033 4304 3.860681 CACCTATGCATTGGGGGC 58.139 61.111 27.42 0.00 0.00 5.80
4043 4314 4.615912 GCACCAACAAGTTAAGCACCTATG 60.616 45.833 0.00 0.00 0.00 2.23
4044 4315 3.506067 GCACCAACAAGTTAAGCACCTAT 59.494 43.478 0.00 0.00 0.00 2.57
4045 4316 2.882137 GCACCAACAAGTTAAGCACCTA 59.118 45.455 0.00 0.00 0.00 3.08
4046 4317 1.681264 GCACCAACAAGTTAAGCACCT 59.319 47.619 0.00 0.00 0.00 4.00
4047 4318 1.681264 AGCACCAACAAGTTAAGCACC 59.319 47.619 0.00 0.00 0.00 5.01
4048 4319 4.537015 CTTAGCACCAACAAGTTAAGCAC 58.463 43.478 0.00 0.00 0.00 4.40
4049 4320 3.004315 GCTTAGCACCAACAAGTTAAGCA 59.996 43.478 13.60 0.00 46.85 3.91
4050 4321 3.565516 GCTTAGCACCAACAAGTTAAGC 58.434 45.455 0.00 0.00 43.66 3.09
4051 4322 4.829064 TGCTTAGCACCAACAAGTTAAG 57.171 40.909 1.39 0.00 31.71 1.85
4052 4323 4.217550 GGATGCTTAGCACCAACAAGTTAA 59.782 41.667 9.82 0.00 43.04 2.01
4053 4324 3.756434 GGATGCTTAGCACCAACAAGTTA 59.244 43.478 9.82 0.00 43.04 2.24
4054 4325 2.558359 GGATGCTTAGCACCAACAAGTT 59.442 45.455 9.82 0.00 43.04 2.66
4055 4326 2.162681 GGATGCTTAGCACCAACAAGT 58.837 47.619 9.82 0.00 43.04 3.16
4056 4327 2.440409 AGGATGCTTAGCACCAACAAG 58.560 47.619 21.37 0.00 43.04 3.16
4057 4328 2.584835 AGGATGCTTAGCACCAACAA 57.415 45.000 21.37 0.00 43.04 2.83
4058 4329 2.584835 AAGGATGCTTAGCACCAACA 57.415 45.000 21.37 0.00 43.04 3.33
4059 4330 5.582689 AATAAAGGATGCTTAGCACCAAC 57.417 39.130 21.37 9.09 43.04 3.77
4060 4331 7.710676 TTAAATAAAGGATGCTTAGCACCAA 57.289 32.000 21.37 11.03 43.04 3.67
4061 4332 7.896383 ATTAAATAAAGGATGCTTAGCACCA 57.104 32.000 21.37 7.39 43.04 4.17
4085 4356 8.977505 GCATGAAGAACTTTAGTTGCAAAATAA 58.022 29.630 0.00 0.50 38.56 1.40
4086 4357 8.140628 TGCATGAAGAACTTTAGTTGCAAAATA 58.859 29.630 0.00 0.00 38.56 1.40
4087 4358 6.985645 TGCATGAAGAACTTTAGTTGCAAAAT 59.014 30.769 0.00 0.00 38.56 1.82
4088 4359 6.336566 TGCATGAAGAACTTTAGTTGCAAAA 58.663 32.000 0.00 0.00 38.56 2.44
4089 4360 5.900425 TGCATGAAGAACTTTAGTTGCAAA 58.100 33.333 0.00 0.00 38.56 3.68
4090 4361 5.512753 TGCATGAAGAACTTTAGTTGCAA 57.487 34.783 0.00 0.00 38.56 4.08
4091 4362 5.710513 ATGCATGAAGAACTTTAGTTGCA 57.289 34.783 0.00 3.71 38.56 4.08
4092 4363 5.346822 CCAATGCATGAAGAACTTTAGTTGC 59.653 40.000 0.00 0.00 38.56 4.17
4093 4364 6.364165 CACCAATGCATGAAGAACTTTAGTTG 59.636 38.462 0.00 0.00 38.56 3.16
4094 4365 6.449698 CACCAATGCATGAAGAACTTTAGTT 58.550 36.000 0.00 0.00 41.64 2.24
4095 4366 5.047802 CCACCAATGCATGAAGAACTTTAGT 60.048 40.000 0.00 0.00 0.00 2.24
4096 4367 5.404946 CCACCAATGCATGAAGAACTTTAG 58.595 41.667 0.00 0.00 0.00 1.85
4097 4368 4.220382 CCCACCAATGCATGAAGAACTTTA 59.780 41.667 0.00 0.00 0.00 1.85
4098 4369 3.007182 CCCACCAATGCATGAAGAACTTT 59.993 43.478 0.00 0.00 0.00 2.66
4099 4370 2.564062 CCCACCAATGCATGAAGAACTT 59.436 45.455 0.00 0.00 0.00 2.66
4100 4371 2.173519 CCCACCAATGCATGAAGAACT 58.826 47.619 0.00 0.00 0.00 3.01
4101 4372 2.170166 TCCCACCAATGCATGAAGAAC 58.830 47.619 0.00 0.00 0.00 3.01
4102 4373 2.601240 TCCCACCAATGCATGAAGAA 57.399 45.000 0.00 0.00 0.00 2.52
4103 4374 2.832643 ATCCCACCAATGCATGAAGA 57.167 45.000 0.00 0.00 0.00 2.87
4104 4375 3.028850 AGAATCCCACCAATGCATGAAG 58.971 45.455 0.00 0.00 0.00 3.02
4105 4376 3.104519 AGAATCCCACCAATGCATGAA 57.895 42.857 0.00 0.00 0.00 2.57
4106 4377 2.832643 AGAATCCCACCAATGCATGA 57.167 45.000 0.00 0.00 0.00 3.07
4107 4378 2.101917 GGAAGAATCCCACCAATGCATG 59.898 50.000 0.00 0.00 40.10 4.06
4108 4379 2.292389 TGGAAGAATCCCACCAATGCAT 60.292 45.455 0.00 0.00 45.95 3.96
4109 4380 1.076841 TGGAAGAATCCCACCAATGCA 59.923 47.619 0.00 0.00 45.95 3.96
4110 4381 1.851304 TGGAAGAATCCCACCAATGC 58.149 50.000 0.00 0.00 45.95 3.56
4111 4382 6.543430 TTAAATGGAAGAATCCCACCAATG 57.457 37.500 0.00 0.00 45.95 2.82
4112 4383 7.182568 ACAATTAAATGGAAGAATCCCACCAAT 59.817 33.333 0.00 0.00 45.95 3.16
4113 4384 6.500049 ACAATTAAATGGAAGAATCCCACCAA 59.500 34.615 0.00 0.00 45.95 3.67
4114 4385 6.022315 ACAATTAAATGGAAGAATCCCACCA 58.978 36.000 0.00 0.00 45.95 4.17
4115 4386 6.544928 ACAATTAAATGGAAGAATCCCACC 57.455 37.500 0.00 0.00 45.95 4.61
4116 4387 8.720562 CAAAACAATTAAATGGAAGAATCCCAC 58.279 33.333 0.00 0.00 45.95 4.61
4117 4388 7.390162 GCAAAACAATTAAATGGAAGAATCCCA 59.610 33.333 0.00 0.00 45.95 4.37
4118 4389 7.148255 GGCAAAACAATTAAATGGAAGAATCCC 60.148 37.037 0.00 0.00 45.95 3.85
4119 4390 7.607607 AGGCAAAACAATTAAATGGAAGAATCC 59.392 33.333 0.00 0.00 46.76 3.01
4120 4391 8.552083 AGGCAAAACAATTAAATGGAAGAATC 57.448 30.769 0.00 0.00 0.00 2.52
4121 4392 9.657419 CTAGGCAAAACAATTAAATGGAAGAAT 57.343 29.630 0.00 0.00 0.00 2.40
4122 4393 8.093927 CCTAGGCAAAACAATTAAATGGAAGAA 58.906 33.333 0.00 0.00 0.00 2.52
4123 4394 7.234577 ACCTAGGCAAAACAATTAAATGGAAGA 59.765 33.333 9.30 0.00 0.00 2.87
4124 4395 7.386059 ACCTAGGCAAAACAATTAAATGGAAG 58.614 34.615 9.30 0.00 0.00 3.46
4125 4396 7.309770 ACCTAGGCAAAACAATTAAATGGAA 57.690 32.000 9.30 0.00 0.00 3.53
4126 4397 6.926630 ACCTAGGCAAAACAATTAAATGGA 57.073 33.333 9.30 0.00 0.00 3.41
4127 4398 7.386059 AGAACCTAGGCAAAACAATTAAATGG 58.614 34.615 9.30 0.00 0.00 3.16
4128 4399 7.273381 CGAGAACCTAGGCAAAACAATTAAATG 59.727 37.037 9.30 0.00 0.00 2.32
4129 4400 7.039993 ACGAGAACCTAGGCAAAACAATTAAAT 60.040 33.333 9.30 0.00 0.00 1.40
4130 4401 6.263617 ACGAGAACCTAGGCAAAACAATTAAA 59.736 34.615 9.30 0.00 0.00 1.52
4131 4402 5.766174 ACGAGAACCTAGGCAAAACAATTAA 59.234 36.000 9.30 0.00 0.00 1.40
4132 4403 5.310451 ACGAGAACCTAGGCAAAACAATTA 58.690 37.500 9.30 0.00 0.00 1.40
4133 4404 4.142038 ACGAGAACCTAGGCAAAACAATT 58.858 39.130 9.30 0.00 0.00 2.32
4134 4405 3.751518 ACGAGAACCTAGGCAAAACAAT 58.248 40.909 9.30 0.00 0.00 2.71
4135 4406 3.202829 ACGAGAACCTAGGCAAAACAA 57.797 42.857 9.30 0.00 0.00 2.83
4136 4407 2.922740 ACGAGAACCTAGGCAAAACA 57.077 45.000 9.30 0.00 0.00 2.83
4137 4408 3.922910 AGTACGAGAACCTAGGCAAAAC 58.077 45.455 9.30 0.00 0.00 2.43
4138 4409 4.039488 TCAAGTACGAGAACCTAGGCAAAA 59.961 41.667 9.30 0.00 0.00 2.44
4139 4410 3.575256 TCAAGTACGAGAACCTAGGCAAA 59.425 43.478 9.30 0.00 0.00 3.68
4140 4411 3.057033 GTCAAGTACGAGAACCTAGGCAA 60.057 47.826 9.30 0.00 0.00 4.52
4141 4412 2.490903 GTCAAGTACGAGAACCTAGGCA 59.509 50.000 9.30 0.00 0.00 4.75
4142 4413 2.490903 TGTCAAGTACGAGAACCTAGGC 59.509 50.000 9.30 0.00 0.00 3.93
4143 4414 4.985538 ATGTCAAGTACGAGAACCTAGG 57.014 45.455 7.41 7.41 0.00 3.02
4144 4415 5.710984 ACAATGTCAAGTACGAGAACCTAG 58.289 41.667 0.00 0.00 0.00 3.02
4145 4416 5.717078 ACAATGTCAAGTACGAGAACCTA 57.283 39.130 0.00 0.00 0.00 3.08
4146 4417 4.602340 ACAATGTCAAGTACGAGAACCT 57.398 40.909 0.00 0.00 0.00 3.50
4147 4418 5.668558 AAACAATGTCAAGTACGAGAACC 57.331 39.130 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.