Multiple sequence alignment - TraesCS5D01G359900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G359900 chr5D 100.000 4703 0 0 1 4703 439679285 439674583 0.000000e+00 8685.0
1 TraesCS5D01G359900 chr5A 90.441 4237 191 83 544 4658 555568776 555564632 0.000000e+00 5384.0
2 TraesCS5D01G359900 chr5A 82.555 321 45 11 1 314 555569640 555569324 6.000000e-69 272.0
3 TraesCS5D01G359900 chr5A 88.276 145 16 1 6 149 555569473 555569329 6.260000e-39 172.0
4 TraesCS5D01G359900 chr5B 92.048 2754 120 45 541 3233 534366004 534363289 0.000000e+00 3781.0
5 TraesCS5D01G359900 chr5B 91.748 1236 68 16 3159 4378 534363329 534362112 0.000000e+00 1687.0
6 TraesCS5D01G359900 chr5B 86.064 409 41 11 1 397 534366685 534366281 4.350000e-115 425.0
7 TraesCS5D01G359900 chr5B 83.492 315 42 9 1 309 534366847 534366537 7.700000e-73 285.0
8 TraesCS5D01G359900 chr5B 90.714 140 11 2 4564 4703 534361601 534361464 8.040000e-43 185.0
9 TraesCS5D01G359900 chr5B 85.315 143 19 2 4419 4560 534362108 534361967 3.790000e-31 147.0
10 TraesCS5D01G359900 chr2B 84.663 163 20 4 1034 1192 316052092 316051931 1.750000e-34 158.0
11 TraesCS5D01G359900 chr2D 84.049 163 21 4 1034 1192 288615809 288615648 8.150000e-33 152.0
12 TraesCS5D01G359900 chr2A 83.333 162 24 2 1034 1192 348093427 348093266 3.790000e-31 147.0
13 TraesCS5D01G359900 chr2A 91.304 46 3 1 4389 4433 11373331 11373376 1.410000e-05 62.1
14 TraesCS5D01G359900 chr1A 90.385 52 4 1 4374 4425 445545650 445545700 3.040000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G359900 chr5D 439674583 439679285 4702 True 8685.000000 8685 100.000000 1 4703 1 chr5D.!!$R1 4702
1 TraesCS5D01G359900 chr5A 555564632 555569640 5008 True 1942.666667 5384 87.090667 1 4658 3 chr5A.!!$R1 4657
2 TraesCS5D01G359900 chr5B 534361464 534366847 5383 True 1085.000000 3781 88.230167 1 4703 6 chr5B.!!$R1 4702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 1282 0.036294 CGGTCACTTTTCTCCCTCCC 60.036 60.0 0.00 0.00 0.00 4.30 F
954 1413 0.179081 CCCCTTTCGAATCCGGACTC 60.179 60.0 6.12 3.77 36.24 3.36 F
1546 2022 0.249280 CGCAAACTGGGACCAAAACC 60.249 55.0 0.00 0.00 31.21 3.27 F
2382 2864 0.250295 TAGCGTTTGAGCTTGCCACT 60.250 50.0 0.00 0.00 46.80 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2405 2887 0.179103 ACTGCAACTTTGGCAAGTGC 60.179 50.0 19.63 19.63 42.89 4.40 R
2582 3086 0.322816 ATGTCTGCAACCTCGGCATT 60.323 50.0 0.00 0.00 41.06 3.56 R
2997 3508 0.947244 GGACAACCAGAACAGCACAG 59.053 55.0 0.00 0.00 35.97 3.66 R
4055 4641 0.102120 CAACCAGCAAACGGAAAGCA 59.898 50.0 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.602458 AAGAAAAAGGAACCGATAACGTC 57.398 39.130 0.00 0.00 37.88 4.34
48 49 5.952526 AAAAGGAACCGATAACGTCAAAT 57.047 34.783 0.00 0.00 37.88 2.32
49 50 7.388500 AGAAAAAGGAACCGATAACGTCAAATA 59.612 33.333 0.00 0.00 37.88 1.40
50 51 7.619964 AAAAGGAACCGATAACGTCAAATAT 57.380 32.000 0.00 0.00 37.88 1.28
82 95 9.425893 GACGAACATAAATGAGTATGAAATGTG 57.574 33.333 0.00 0.00 35.74 3.21
103 116 4.851558 GTGAGAAACAAAATCGGAAATCGG 59.148 41.667 0.00 0.00 39.77 4.18
107 120 7.094549 TGAGAAACAAAATCGGAAATCGGTAAT 60.095 33.333 0.00 0.00 39.77 1.89
110 123 5.636837 ACAAAATCGGAAATCGGTAATGTG 58.363 37.500 0.00 0.00 39.77 3.21
142 155 7.707624 TTTAGAGGAACGTAAATGAGTAGGA 57.292 36.000 0.00 0.00 0.00 2.94
228 402 8.341173 ACGTCAAATATTACTAGAGGAACGTAG 58.659 37.037 0.00 0.00 0.00 3.51
339 522 6.128117 TGACAGGTAATGCCGAAAGTAAATTC 60.128 38.462 0.00 0.00 43.70 2.17
343 526 6.316390 AGGTAATGCCGAAAGTAAATTCAGAG 59.684 38.462 0.00 0.00 43.70 3.35
356 539 2.880822 TTCAGAGCGAATTCAAAGCG 57.119 45.000 6.22 0.00 35.78 4.68
365 548 3.785505 GCGAATTCAAAGCGGTACAGATG 60.786 47.826 6.22 0.00 0.00 2.90
366 549 3.685058 GAATTCAAAGCGGTACAGATGC 58.315 45.455 0.00 0.00 0.00 3.91
393 606 3.839293 CGAGTGTTTGTAGGAGAAGAGG 58.161 50.000 0.00 0.00 0.00 3.69
408 652 5.177142 GGAGAAGAGGAAACTAAAACGTGAC 59.823 44.000 0.00 0.00 44.43 3.67
411 655 4.296690 AGAGGAAACTAAAACGTGACGAG 58.703 43.478 13.70 0.00 44.43 4.18
417 663 7.115947 AGGAAACTAAAACGTGACGAGAAATAG 59.884 37.037 13.70 8.94 40.61 1.73
420 666 5.867716 ACTAAAACGTGACGAGAAATAGCAT 59.132 36.000 13.70 0.00 0.00 3.79
432 678 4.824289 AGAAATAGCATGCCAAAACCAAG 58.176 39.130 15.66 0.00 0.00 3.61
437 683 2.435437 AGCATGCCAAAACCAAGAAACT 59.565 40.909 15.66 0.00 0.00 2.66
440 686 4.261994 GCATGCCAAAACCAAGAAACTAGA 60.262 41.667 6.36 0.00 0.00 2.43
443 689 6.084326 TGCCAAAACCAAGAAACTAGATTC 57.916 37.500 4.64 4.64 0.00 2.52
446 692 6.016276 GCCAAAACCAAGAAACTAGATTCTCA 60.016 38.462 14.89 0.00 38.69 3.27
447 693 7.363431 CCAAAACCAAGAAACTAGATTCTCAC 58.637 38.462 14.89 0.00 38.69 3.51
448 694 6.787085 AAACCAAGAAACTAGATTCTCACG 57.213 37.500 14.89 8.41 38.69 4.35
449 695 4.822026 ACCAAGAAACTAGATTCTCACGG 58.178 43.478 14.89 16.35 38.69 4.94
450 696 4.527038 ACCAAGAAACTAGATTCTCACGGA 59.473 41.667 22.20 0.00 38.69 4.69
451 697 5.011738 ACCAAGAAACTAGATTCTCACGGAA 59.988 40.000 22.20 0.00 38.69 4.30
452 698 5.932303 CCAAGAAACTAGATTCTCACGGAAA 59.068 40.000 14.89 0.00 38.69 3.13
474 836 4.384056 ACTCCGCATCATTTTCATCCTAG 58.616 43.478 0.00 0.00 0.00 3.02
480 842 6.483307 CCGCATCATTTTCATCCTAGTTCTTA 59.517 38.462 0.00 0.00 0.00 2.10
505 867 0.591170 AAGTCCACACGAAATTGCGG 59.409 50.000 11.31 1.68 35.12 5.69
512 874 1.402259 ACACGAAATTGCGGTGTGAAA 59.598 42.857 11.31 0.00 34.72 2.69
516 878 3.733727 ACGAAATTGCGGTGTGAAAAATC 59.266 39.130 11.31 0.00 35.12 2.17
522 884 7.721286 AATTGCGGTGTGAAAAATCATTAAA 57.279 28.000 0.00 0.00 0.00 1.52
523 885 7.721286 ATTGCGGTGTGAAAAATCATTAAAA 57.279 28.000 0.00 0.00 0.00 1.52
526 888 6.014898 GCGGTGTGAAAAATCATTAAAATGC 58.985 36.000 0.00 0.00 36.36 3.56
527 889 6.128580 GCGGTGTGAAAAATCATTAAAATGCT 60.129 34.615 0.00 0.00 36.36 3.79
528 890 7.228840 CGGTGTGAAAAATCATTAAAATGCTG 58.771 34.615 0.00 0.00 36.36 4.41
529 891 7.095691 CGGTGTGAAAAATCATTAAAATGCTGT 60.096 33.333 0.00 0.00 36.36 4.40
530 892 8.011106 GGTGTGAAAAATCATTAAAATGCTGTG 58.989 33.333 0.00 0.00 36.36 3.66
531 893 8.011106 GTGTGAAAAATCATTAAAATGCTGTGG 58.989 33.333 0.00 0.00 36.36 4.17
532 894 7.172875 TGTGAAAAATCATTAAAATGCTGTGGG 59.827 33.333 0.00 0.00 36.36 4.61
533 895 7.387397 GTGAAAAATCATTAAAATGCTGTGGGA 59.613 33.333 0.00 0.00 36.36 4.37
534 896 7.935755 TGAAAAATCATTAAAATGCTGTGGGAA 59.064 29.630 0.00 0.00 36.36 3.97
536 898 8.688747 AAAATCATTAAAATGCTGTGGGAAAA 57.311 26.923 0.00 0.00 36.36 2.29
537 899 7.910441 AATCATTAAAATGCTGTGGGAAAAG 57.090 32.000 0.00 0.00 36.36 2.27
538 900 5.237048 TCATTAAAATGCTGTGGGAAAAGC 58.763 37.500 0.00 0.00 39.96 3.51
542 904 2.417978 TGCTGTGGGAAAAGCAGTG 58.582 52.632 0.00 0.00 44.26 3.66
570 980 1.147153 GAGAGGGAATTGGGCTCCG 59.853 63.158 0.00 0.00 33.36 4.63
581 991 3.358111 TTGGGCTCCGAAAATGTGATA 57.642 42.857 0.00 0.00 0.00 2.15
583 993 3.897239 TGGGCTCCGAAAATGTGATATT 58.103 40.909 0.00 0.00 0.00 1.28
584 994 3.882888 TGGGCTCCGAAAATGTGATATTC 59.117 43.478 0.00 0.00 0.00 1.75
598 1008 2.760092 TGATATTCAAGGGGTGCTTTGC 59.240 45.455 0.00 0.00 0.00 3.68
616 1026 1.950909 TGCTTTGACCGTGGGTTTTAG 59.049 47.619 0.00 0.00 35.25 1.85
648 1058 4.022068 TGATTGGTCCAAAATGAGCACTTC 60.022 41.667 8.75 0.00 42.03 3.01
656 1066 6.583806 GTCCAAAATGAGCACTTCACTATTTG 59.416 38.462 0.00 0.00 38.99 2.32
658 1068 4.708726 AATGAGCACTTCACTATTTGGC 57.291 40.909 0.00 0.00 38.99 4.52
659 1069 2.436417 TGAGCACTTCACTATTTGGCC 58.564 47.619 0.00 0.00 0.00 5.36
660 1070 1.745653 GAGCACTTCACTATTTGGCCC 59.254 52.381 0.00 0.00 0.00 5.80
661 1071 0.451783 GCACTTCACTATTTGGCCCG 59.548 55.000 0.00 0.00 0.00 6.13
718 1152 4.851843 CATGCATGGGATATGTATGGACT 58.148 43.478 19.40 0.00 38.10 3.85
720 1154 5.420725 TGCATGGGATATGTATGGACTAC 57.579 43.478 0.00 0.00 0.00 2.73
806 1260 4.555709 GTGGTGTGGTGGTGGCGA 62.556 66.667 0.00 0.00 0.00 5.54
828 1282 0.036294 CGGTCACTTTTCTCCCTCCC 60.036 60.000 0.00 0.00 0.00 4.30
847 1301 2.125202 CTCCGCCACCGAACAAAACC 62.125 60.000 0.00 0.00 36.29 3.27
871 1328 1.004277 TCCACTCCAGAAAAATCCCCG 59.996 52.381 0.00 0.00 0.00 5.73
952 1411 1.153229 CCCCCTTTCGAATCCGGAC 60.153 63.158 6.12 0.00 36.24 4.79
953 1412 1.623542 CCCCCTTTCGAATCCGGACT 61.624 60.000 6.12 0.00 36.24 3.85
954 1413 0.179081 CCCCTTTCGAATCCGGACTC 60.179 60.000 6.12 3.77 36.24 3.36
955 1414 0.527817 CCCTTTCGAATCCGGACTCG 60.528 60.000 28.35 28.35 36.24 4.18
970 1429 4.144727 TCGGGAGGAGGAGGAGCC 62.145 72.222 0.00 0.00 0.00 4.70
1214 1682 4.554363 CCTCAGCGTACGCCCGAG 62.554 72.222 33.91 33.91 43.17 4.63
1330 1804 2.047560 GGGTTTCCCGTCGTCTGG 60.048 66.667 0.00 0.00 32.13 3.86
1418 1893 4.864704 TTTACCCTGTTCCATTGCTTTC 57.135 40.909 0.00 0.00 0.00 2.62
1431 1906 4.803088 CCATTGCTTTCGTTCTGTTCAAAA 59.197 37.500 0.00 0.00 0.00 2.44
1527 2003 1.000283 CAGGTCTCTCCCGTGATATGC 60.000 57.143 0.00 0.00 36.75 3.14
1546 2022 0.249280 CGCAAACTGGGACCAAAACC 60.249 55.000 0.00 0.00 31.21 3.27
1567 2049 4.713824 CAGTATTTACTGTCCTCCGTCA 57.286 45.455 9.17 0.00 46.51 4.35
1603 2085 0.806868 ATTGTGCGATCTGTGCAAGG 59.193 50.000 0.00 0.00 45.23 3.61
1605 2087 2.032376 TGCGATCTGTGCAAGGCA 59.968 55.556 0.00 0.00 39.87 4.75
1606 2088 1.377594 TGCGATCTGTGCAAGGCAT 60.378 52.632 0.00 0.00 41.91 4.40
1627 2109 6.844696 CATATGTTGCTAACTGAATACCGT 57.155 37.500 0.00 0.00 0.00 4.83
1628 2110 6.649436 CATATGTTGCTAACTGAATACCGTG 58.351 40.000 0.00 0.00 0.00 4.94
1632 2114 5.703592 TGTTGCTAACTGAATACCGTGATTT 59.296 36.000 0.00 0.00 0.00 2.17
1942 2424 0.809636 CGGCCTCGATTACATGCACA 60.810 55.000 0.00 0.00 39.00 4.57
2085 2567 4.710695 CAGTACCGCACGCCGTCA 62.711 66.667 0.00 0.00 34.38 4.35
2325 2807 2.484889 GAGGTTATCATCGGTTCTGGC 58.515 52.381 0.00 0.00 0.00 4.85
2358 2840 1.213094 CCGATATGTGGTCGTTCGCC 61.213 60.000 0.00 0.00 37.39 5.54
2364 2846 1.175654 TGTGGTCGTTCGCCTGTATA 58.824 50.000 7.06 0.00 0.00 1.47
2382 2864 0.250295 TAGCGTTTGAGCTTGCCACT 60.250 50.000 0.00 0.00 46.80 4.00
2405 2887 0.524862 GACATGCTGTTTGCTCCCAG 59.475 55.000 0.00 0.00 43.37 4.45
2416 2898 2.202395 GCTCCCAGCACTTGCCAAA 61.202 57.895 0.00 0.00 41.89 3.28
2441 2923 5.947228 TGCAGTGAAGATGAGGTAAAAAG 57.053 39.130 0.00 0.00 0.00 2.27
2510 2996 6.763610 ACTAGTAGCATTAGCAATGAAGGTTC 59.236 38.462 11.52 0.00 45.49 3.62
2568 3064 9.802039 ATGGGTTTTCTAACATTAGTCAAACTA 57.198 29.630 18.37 12.93 36.44 2.24
2569 3065 9.280174 TGGGTTTTCTAACATTAGTCAAACTAG 57.720 33.333 18.37 0.00 36.44 2.57
2570 3066 9.281371 GGGTTTTCTAACATTAGTCAAACTAGT 57.719 33.333 18.37 0.00 36.44 2.57
2642 3146 2.884012 CCTGCTGTTGTTATGTTGGTCA 59.116 45.455 0.00 0.00 0.00 4.02
2644 3148 4.539870 CTGCTGTTGTTATGTTGGTCAAG 58.460 43.478 0.00 0.00 0.00 3.02
2846 3356 6.306596 GCACTTTTCTGCTAGTATGCTTTTTC 59.693 38.462 0.00 0.00 34.06 2.29
2853 3363 4.155280 TGCTAGTATGCTTTTTCGGTTTCC 59.845 41.667 0.00 0.00 0.00 3.13
2882 3393 6.070881 TGTTTATTATGACCCTGCAAAGCAAT 60.071 34.615 0.00 0.00 38.41 3.56
2898 3409 3.505386 AGCAATCCCCATTGTACAAACA 58.495 40.909 13.23 0.00 41.51 2.83
2981 3492 9.712305 ATAGAAGTGCATCTTAATGTGGTATAC 57.288 33.333 0.00 0.00 36.40 1.47
2986 3497 4.575885 CATCTTAATGTGGTATACCCGGG 58.424 47.826 22.25 22.25 35.15 5.73
2997 3508 3.509184 GGTATACCCGGGACAGATCTAAC 59.491 52.174 32.02 11.04 0.00 2.34
3062 3573 5.431420 TGTAATACACTGGCACAAAACAG 57.569 39.130 0.00 0.00 38.70 3.16
3066 3590 2.999331 ACACTGGCACAAAACAGTACT 58.001 42.857 0.00 0.00 45.52 2.73
3106 3631 7.387673 CCGTAGCCAGTGATTATTGAATAATGA 59.612 37.037 14.63 4.11 35.68 2.57
3278 3847 4.280929 TCTTAGCTGCAAAGTCTACAGTGA 59.719 41.667 1.02 0.00 33.87 3.41
3336 3910 5.665916 TGAACTCATCTCTCTGTTGCATA 57.334 39.130 0.00 0.00 0.00 3.14
3389 3963 0.323451 AAACCCTCGGAAAGATGCCC 60.323 55.000 0.00 0.00 0.00 5.36
3434 4008 1.067565 ACACGCTCTTGTCATGTCGAT 60.068 47.619 0.00 0.00 0.00 3.59
3727 4310 7.604657 TTCAACCAAACCACCAAGTAATAAT 57.395 32.000 0.00 0.00 0.00 1.28
3728 4311 8.707796 TTCAACCAAACCACCAAGTAATAATA 57.292 30.769 0.00 0.00 0.00 0.98
3729 4312 8.707796 TCAACCAAACCACCAAGTAATAATAA 57.292 30.769 0.00 0.00 0.00 1.40
3749 4332 1.338200 ACTTCAGAAGCAGCCTAACCG 60.338 52.381 10.33 0.00 0.00 4.44
3750 4333 0.973632 TTCAGAAGCAGCCTAACCGA 59.026 50.000 0.00 0.00 0.00 4.69
3751 4334 0.246635 TCAGAAGCAGCCTAACCGAC 59.753 55.000 0.00 0.00 0.00 4.79
3752 4335 0.741221 CAGAAGCAGCCTAACCGACC 60.741 60.000 0.00 0.00 0.00 4.79
3790 4373 1.471676 GGAGGCCGAGTGTTAGACATG 60.472 57.143 0.00 0.00 0.00 3.21
3821 4404 0.099436 GCACTGATTTCGACATGGCC 59.901 55.000 0.00 0.00 0.00 5.36
3905 4488 1.709760 GCCGTCATGATCGTGTGTG 59.290 57.895 14.52 5.94 0.00 3.82
3909 4492 2.223144 CCGTCATGATCGTGTGTGTTTT 59.777 45.455 14.52 0.00 0.00 2.43
3910 4493 3.303725 CCGTCATGATCGTGTGTGTTTTT 60.304 43.478 14.52 0.00 0.00 1.94
3920 4503 2.096174 GTGTGTGTTTTTGGTGTAGCGA 59.904 45.455 0.00 0.00 0.00 4.93
3931 4514 0.179134 GTGTAGCGAGTGGGCTAGTG 60.179 60.000 0.00 0.00 45.55 2.74
3952 4535 2.049185 GTGTGTTGTGGGTGGTGCA 61.049 57.895 0.00 0.00 0.00 4.57
3998 4584 6.531240 GTGGTGTTTATTTATTCTGCATGTGG 59.469 38.462 0.00 0.00 0.00 4.17
3999 4585 5.519927 GGTGTTTATTTATTCTGCATGTGGC 59.480 40.000 0.00 0.00 45.13 5.01
4022 4608 4.563993 CGGGGTGTAAGAAGATGTTTGGTA 60.564 45.833 0.00 0.00 0.00 3.25
4129 4716 1.999071 GCGGTGCAGTGTGGTTCAAA 61.999 55.000 0.00 0.00 0.00 2.69
4163 4753 0.318955 CGCTGGAAAGCTGGGTTTTG 60.319 55.000 0.00 0.00 0.00 2.44
4284 4875 1.001181 TGCGACCCCTACTGTTTACAC 59.999 52.381 0.00 0.00 0.00 2.90
4297 4893 7.541437 CCTACTGTTTACACAAGTAGTTAGAGC 59.459 40.741 13.10 0.00 35.25 4.09
4321 4917 4.662278 TCTCCAACCAGTCCCATAAAAAG 58.338 43.478 0.00 0.00 0.00 2.27
4342 4938 4.606210 AGGTTCACCTACAAGTGGTTTTT 58.394 39.130 0.00 0.00 46.48 1.94
4357 4953 2.218530 GGTTTTTGCATCAACAACGAGC 59.781 45.455 9.94 0.00 35.61 5.03
4395 4991 3.459232 TGCTAAAGATCGGACATCAGG 57.541 47.619 0.00 0.00 0.00 3.86
4415 5011 7.531857 TCAGGTTTTTAAGCATGGTAAATCA 57.468 32.000 0.00 0.00 0.00 2.57
4461 5057 0.994995 CATGTCAAGTCTCTTCGGCG 59.005 55.000 0.00 0.00 0.00 6.46
4510 5112 8.570096 AAAAAGAAAACCGTTAGATTTGCTAC 57.430 30.769 0.00 0.00 0.00 3.58
4584 5548 4.717280 TGAAAGTGGTTTTATGGGGTGTTT 59.283 37.500 0.00 0.00 0.00 2.83
4658 5622 8.924691 GCTGTCAAGATTAAAATTGCACATTAA 58.075 29.630 0.00 0.00 0.00 1.40
4683 5647 8.877864 AGAATTGGGTAATGTTATTCAGTGAA 57.122 30.769 8.27 8.27 0.00 3.18
4685 5649 8.415950 AATTGGGTAATGTTATTCAGTGAACA 57.584 30.769 7.96 2.86 39.74 3.18
4686 5650 8.593945 ATTGGGTAATGTTATTCAGTGAACAT 57.406 30.769 7.96 5.39 45.86 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 8.448615 CGTTATCGGTTCCTTTTTCTTTCTAAT 58.551 33.333 0.00 0.00 0.00 1.73
17 18 7.442062 ACGTTATCGGTTCCTTTTTCTTTCTAA 59.558 33.333 0.00 0.00 41.85 2.10
18 19 6.930722 ACGTTATCGGTTCCTTTTTCTTTCTA 59.069 34.615 0.00 0.00 41.85 2.10
19 20 5.761726 ACGTTATCGGTTCCTTTTTCTTTCT 59.238 36.000 0.00 0.00 41.85 2.52
24 25 4.996062 TGACGTTATCGGTTCCTTTTTC 57.004 40.909 0.00 0.00 41.85 2.29
25 26 5.754543 TTTGACGTTATCGGTTCCTTTTT 57.245 34.783 0.00 0.00 41.85 1.94
27 28 7.619964 AATATTTGACGTTATCGGTTCCTTT 57.380 32.000 0.00 0.00 41.85 3.11
28 29 8.897872 ATAATATTTGACGTTATCGGTTCCTT 57.102 30.769 0.00 0.00 41.85 3.36
34 35 9.333497 TCGTCTAATAATATTTGACGTTATCGG 57.667 33.333 31.98 15.03 46.85 4.18
58 71 9.642312 CTCACATTTCATACTCATTTATGTTCG 57.358 33.333 0.00 0.00 32.17 3.95
82 95 5.043189 ACCGATTTCCGATTTTGTTTCTC 57.957 39.130 0.00 0.00 41.76 2.87
93 106 7.795482 AATATTTCACATTACCGATTTCCGA 57.205 32.000 0.00 0.00 41.76 4.55
153 166 4.497291 TTTCGTACTCATTTATGCCCCT 57.503 40.909 0.00 0.00 0.00 4.79
187 200 6.980051 ATTTGACGTTATAGGTTTCCTGTC 57.020 37.500 0.00 0.00 34.61 3.51
314 488 2.851263 ACTTTCGGCATTACCTGTCA 57.149 45.000 0.00 0.00 35.61 3.58
315 489 5.813080 ATTTACTTTCGGCATTACCTGTC 57.187 39.130 0.00 0.00 35.61 3.51
319 502 6.431198 TCTGAATTTACTTTCGGCATTACC 57.569 37.500 0.00 0.00 32.95 2.85
324 507 2.415168 CGCTCTGAATTTACTTTCGGCA 59.585 45.455 0.00 0.00 32.95 5.69
339 522 0.798776 ACCGCTTTGAATTCGCTCTG 59.201 50.000 0.04 0.00 0.00 3.35
343 526 1.730064 TCTGTACCGCTTTGAATTCGC 59.270 47.619 0.04 0.00 0.00 4.70
355 538 0.179137 TCGCTTCTGCATCTGTACCG 60.179 55.000 0.00 0.00 39.64 4.02
356 539 1.134965 ACTCGCTTCTGCATCTGTACC 60.135 52.381 0.00 0.00 39.64 3.34
365 548 1.461127 CCTACAAACACTCGCTTCTGC 59.539 52.381 0.00 0.00 0.00 4.26
366 549 2.989840 CTCCTACAAACACTCGCTTCTG 59.010 50.000 0.00 0.00 0.00 3.02
393 606 6.731062 GCTATTTCTCGTCACGTTTTAGTTTC 59.269 38.462 0.00 0.00 0.00 2.78
408 652 3.119531 TGGTTTTGGCATGCTATTTCTCG 60.120 43.478 18.92 0.00 0.00 4.04
411 655 4.819769 TCTTGGTTTTGGCATGCTATTTC 58.180 39.130 18.92 0.10 0.00 2.17
417 663 2.837498 AGTTTCTTGGTTTTGGCATGC 58.163 42.857 9.90 9.90 0.00 4.06
420 666 5.833131 AGAATCTAGTTTCTTGGTTTTGGCA 59.167 36.000 9.81 0.00 31.94 4.92
432 678 5.577554 GGAGTTTCCGTGAGAATCTAGTTTC 59.422 44.000 5.54 5.54 35.16 2.78
448 694 3.848272 TGAAAATGATGCGGAGTTTCC 57.152 42.857 0.00 0.00 0.00 3.13
449 695 4.096984 AGGATGAAAATGATGCGGAGTTTC 59.903 41.667 0.00 0.00 0.00 2.78
450 696 4.019174 AGGATGAAAATGATGCGGAGTTT 58.981 39.130 0.00 0.00 0.00 2.66
451 697 3.624777 AGGATGAAAATGATGCGGAGTT 58.375 40.909 0.00 0.00 0.00 3.01
452 698 3.287867 AGGATGAAAATGATGCGGAGT 57.712 42.857 0.00 0.00 0.00 3.85
484 846 2.834689 CGCAATTTCGTGTGGACTTAC 58.165 47.619 0.00 0.00 0.00 2.34
502 864 6.014898 GCATTTTAATGATTTTTCACACCGC 58.985 36.000 6.64 0.00 38.70 5.68
505 867 8.011106 CCACAGCATTTTAATGATTTTTCACAC 58.989 33.333 6.64 0.00 38.70 3.82
512 874 7.094677 GCTTTTCCCACAGCATTTTAATGATTT 60.095 33.333 6.64 0.00 38.70 2.17
516 878 4.996122 TGCTTTTCCCACAGCATTTTAATG 59.004 37.500 0.00 0.00 41.20 1.90
522 884 1.342174 CACTGCTTTTCCCACAGCATT 59.658 47.619 0.00 0.00 44.98 3.56
523 885 0.963962 CACTGCTTTTCCCACAGCAT 59.036 50.000 0.00 0.00 44.98 3.79
526 888 2.507484 TCATCACTGCTTTTCCCACAG 58.493 47.619 0.00 0.00 37.45 3.66
527 889 2.655090 TCATCACTGCTTTTCCCACA 57.345 45.000 0.00 0.00 0.00 4.17
528 890 5.643379 TTAATCATCACTGCTTTTCCCAC 57.357 39.130 0.00 0.00 0.00 4.61
529 891 6.009589 TCTTTAATCATCACTGCTTTTCCCA 58.990 36.000 0.00 0.00 0.00 4.37
530 892 6.375455 TCTCTTTAATCATCACTGCTTTTCCC 59.625 38.462 0.00 0.00 0.00 3.97
531 893 7.383102 TCTCTTTAATCATCACTGCTTTTCC 57.617 36.000 0.00 0.00 0.00 3.13
532 894 7.414984 CCCTCTCTTTAATCATCACTGCTTTTC 60.415 40.741 0.00 0.00 0.00 2.29
533 895 6.376581 CCCTCTCTTTAATCATCACTGCTTTT 59.623 38.462 0.00 0.00 0.00 2.27
534 896 5.884792 CCCTCTCTTTAATCATCACTGCTTT 59.115 40.000 0.00 0.00 0.00 3.51
536 898 4.718774 TCCCTCTCTTTAATCATCACTGCT 59.281 41.667 0.00 0.00 0.00 4.24
537 899 5.028549 TCCCTCTCTTTAATCATCACTGC 57.971 43.478 0.00 0.00 0.00 4.40
538 900 7.013083 CCAATTCCCTCTCTTTAATCATCACTG 59.987 40.741 0.00 0.00 0.00 3.66
540 902 6.264067 CCCAATTCCCTCTCTTTAATCATCAC 59.736 42.308 0.00 0.00 0.00 3.06
541 903 6.367983 CCCAATTCCCTCTCTTTAATCATCA 58.632 40.000 0.00 0.00 0.00 3.07
542 904 5.242615 GCCCAATTCCCTCTCTTTAATCATC 59.757 44.000 0.00 0.00 0.00 2.92
570 980 5.127682 AGCACCCCTTGAATATCACATTTTC 59.872 40.000 0.00 0.00 0.00 2.29
581 991 1.720781 AAGCAAAGCACCCCTTGAAT 58.279 45.000 0.00 0.00 33.01 2.57
583 993 0.752054 CAAAGCAAAGCACCCCTTGA 59.248 50.000 0.00 0.00 33.01 3.02
584 994 0.752054 TCAAAGCAAAGCACCCCTTG 59.248 50.000 0.00 0.00 33.01 3.61
598 1008 2.292292 CACCTAAAACCCACGGTCAAAG 59.708 50.000 0.00 0.00 33.12 2.77
616 1026 0.679640 TGGACCAATCAATCGGCACC 60.680 55.000 0.00 0.00 0.00 5.01
648 1058 1.024271 CATCACCGGGCCAAATAGTG 58.976 55.000 6.32 4.20 0.00 2.74
656 1066 0.465460 TGCTAATTCATCACCGGGCC 60.465 55.000 6.32 0.00 0.00 5.80
658 1068 3.213506 TGATTGCTAATTCATCACCGGG 58.786 45.455 6.32 0.00 0.00 5.73
659 1069 4.898829 TTGATTGCTAATTCATCACCGG 57.101 40.909 0.00 0.00 0.00 5.28
660 1070 6.092092 TGTTTTGATTGCTAATTCATCACCG 58.908 36.000 0.00 0.00 0.00 4.94
661 1071 7.887996 TTGTTTTGATTGCTAATTCATCACC 57.112 32.000 0.00 0.00 0.00 4.02
718 1152 2.761767 TGGCACTGCTTTATACTCCGTA 59.238 45.455 0.00 0.00 0.00 4.02
720 1154 1.933853 GTGGCACTGCTTTATACTCCG 59.066 52.381 11.13 0.00 0.00 4.63
779 1224 2.670934 CACACCACCAGCTGCCTC 60.671 66.667 8.66 0.00 0.00 4.70
780 1225 4.275508 CCACACCACCAGCTGCCT 62.276 66.667 8.66 0.00 0.00 4.75
782 1227 3.289834 CACCACACCACCAGCTGC 61.290 66.667 8.66 0.00 0.00 5.25
783 1228 2.595463 CCACCACACCACCAGCTG 60.595 66.667 6.78 6.78 0.00 4.24
784 1229 3.096495 ACCACCACACCACCAGCT 61.096 61.111 0.00 0.00 0.00 4.24
785 1230 2.906897 CACCACCACACCACCAGC 60.907 66.667 0.00 0.00 0.00 4.85
786 1231 2.203337 CCACCACCACACCACCAG 60.203 66.667 0.00 0.00 0.00 4.00
787 1232 4.514585 GCCACCACCACACCACCA 62.515 66.667 0.00 0.00 0.00 4.17
806 1260 2.486727 GGAGGGAGAAAAGTGACCGTTT 60.487 50.000 0.00 0.00 0.00 3.60
828 1282 1.281656 GTTTTGTTCGGTGGCGGAG 59.718 57.895 0.00 0.00 0.00 4.63
847 1301 4.081476 GGGGATTTTTCTGGAGTGGAATTG 60.081 45.833 0.00 0.00 0.00 2.32
871 1328 1.141858 TGGGTTTGATTTGGTTTGGCC 59.858 47.619 0.00 0.00 37.90 5.36
952 1411 2.520741 GCTCCTCCTCCTCCCGAG 60.521 72.222 0.00 0.00 38.46 4.63
953 1412 4.144727 GGCTCCTCCTCCTCCCGA 62.145 72.222 0.00 0.00 0.00 5.14
993 1452 2.586079 AACGCCGCCATCGATGAG 60.586 61.111 26.86 18.48 38.10 2.90
994 1453 2.584970 GAACGCCGCCATCGATGA 60.585 61.111 26.86 0.00 38.10 2.92
995 1454 3.988385 CGAACGCCGCCATCGATG 61.988 66.667 18.76 18.76 38.82 3.84
1213 1681 2.978674 AAGATGAGGGGAGGGGGCT 61.979 63.158 0.00 0.00 0.00 5.19
1214 1682 2.368878 AAGATGAGGGGAGGGGGC 60.369 66.667 0.00 0.00 0.00 5.80
1322 1796 2.802057 CGGAATCCAATACCCAGACGAC 60.802 54.545 0.00 0.00 0.00 4.34
1326 1800 0.472471 GGCGGAATCCAATACCCAGA 59.528 55.000 0.00 0.00 0.00 3.86
1328 1802 0.626382 TTGGCGGAATCCAATACCCA 59.374 50.000 0.00 0.00 40.92 4.51
1330 1804 1.947456 GAGTTGGCGGAATCCAATACC 59.053 52.381 0.00 0.00 46.64 2.73
1331 1805 1.947456 GGAGTTGGCGGAATCCAATAC 59.053 52.381 0.00 0.00 46.64 1.89
1366 1840 1.182385 GCATCGTTTTGGGTTGGGGA 61.182 55.000 0.00 0.00 0.00 4.81
1369 1843 1.732683 GCGCATCGTTTTGGGTTGG 60.733 57.895 0.30 0.00 32.52 3.77
1418 1893 1.401018 GGGCCGATTTTGAACAGAACG 60.401 52.381 0.00 0.00 0.00 3.95
1431 1906 1.682684 AGAGTTCTGTCGGGCCGAT 60.683 57.895 33.54 15.44 38.42 4.18
1512 1988 0.249447 TTGCGCATATCACGGGAGAG 60.249 55.000 12.75 0.00 0.00 3.20
1527 2003 0.249280 GGTTTTGGTCCCAGTTTGCG 60.249 55.000 0.00 0.00 0.00 4.85
1567 2049 4.990426 GCACAATACAAGTTTTCCATTGCT 59.010 37.500 0.00 0.00 31.28 3.91
1605 2087 6.578944 TCACGGTATTCAGTTAGCAACATAT 58.421 36.000 0.00 0.00 0.00 1.78
1606 2088 5.968254 TCACGGTATTCAGTTAGCAACATA 58.032 37.500 0.00 0.00 0.00 2.29
1620 2102 4.279671 TGCAGGTTTTGAAATCACGGTATT 59.720 37.500 0.00 0.00 0.00 1.89
1625 2107 3.250762 TCTCTGCAGGTTTTGAAATCACG 59.749 43.478 15.13 0.00 0.00 4.35
1627 2109 5.335113 CGAATCTCTGCAGGTTTTGAAATCA 60.335 40.000 15.13 0.00 0.00 2.57
1628 2110 5.091431 CGAATCTCTGCAGGTTTTGAAATC 58.909 41.667 15.13 7.11 0.00 2.17
1632 2114 2.807967 CACGAATCTCTGCAGGTTTTGA 59.192 45.455 15.13 5.40 0.00 2.69
1942 2424 1.342819 GTGGATAATGCCGAGCTCTCT 59.657 52.381 12.85 0.00 0.00 3.10
2085 2567 3.373439 GCATCTTCTCGCTGAAACTGATT 59.627 43.478 0.00 0.00 33.79 2.57
2325 2807 7.099764 ACCACATATCGGCAGAATAAGAATAG 58.900 38.462 0.00 0.00 0.00 1.73
2358 2840 2.030946 GGCAAGCTCAAACGCTATACAG 59.969 50.000 0.00 0.00 39.86 2.74
2364 2846 1.526917 AGTGGCAAGCTCAAACGCT 60.527 52.632 0.00 0.00 43.31 5.07
2405 2887 0.179103 ACTGCAACTTTGGCAAGTGC 60.179 50.000 19.63 19.63 42.89 4.40
2416 2898 4.623932 TTACCTCATCTTCACTGCAACT 57.376 40.909 0.00 0.00 0.00 3.16
2454 2936 4.900635 AAAGTGCTGAAAGAAACGACAT 57.099 36.364 0.00 0.00 34.07 3.06
2566 3062 5.123227 TCGGCATTAGGAAAAATGGACTAG 58.877 41.667 0.00 0.00 37.34 2.57
2568 3064 3.947834 CTCGGCATTAGGAAAAATGGACT 59.052 43.478 0.00 0.00 37.34 3.85
2569 3065 3.066760 CCTCGGCATTAGGAAAAATGGAC 59.933 47.826 0.00 0.00 37.34 4.02
2570 3066 3.287222 CCTCGGCATTAGGAAAAATGGA 58.713 45.455 0.00 0.00 37.34 3.41
2571 3067 3.023832 ACCTCGGCATTAGGAAAAATGG 58.976 45.455 5.33 0.00 37.34 3.16
2572 3068 4.423732 CAACCTCGGCATTAGGAAAAATG 58.576 43.478 5.33 0.00 39.41 2.32
2574 3070 2.230266 GCAACCTCGGCATTAGGAAAAA 59.770 45.455 5.33 0.00 37.57 1.94
2582 3086 0.322816 ATGTCTGCAACCTCGGCATT 60.323 50.000 0.00 0.00 41.06 3.56
2642 3146 6.839124 TTTATCAATTGCCATGACTCACTT 57.161 33.333 0.00 0.00 0.00 3.16
2644 3148 8.190122 TGTAATTTATCAATTGCCATGACTCAC 58.810 33.333 0.00 0.00 34.87 3.51
2808 3312 4.322804 CAGAAAAGTGCTCAAATCGCAATC 59.677 41.667 0.00 0.00 39.39 2.67
2846 3356 6.809689 GGGTCATAATAAACAAAAGGAAACCG 59.190 38.462 0.00 0.00 0.00 4.44
2853 3363 7.148590 GCTTTGCAGGGTCATAATAAACAAAAG 60.149 37.037 0.00 0.00 0.00 2.27
2882 3393 3.153919 GCTTCTGTTTGTACAATGGGGA 58.846 45.455 9.56 3.38 32.92 4.81
2898 3409 7.472334 ACATCAAATTGTTTCTATGGCTTCT 57.528 32.000 0.00 0.00 0.00 2.85
2981 3492 1.137086 CACAGTTAGATCTGTCCCGGG 59.863 57.143 16.85 16.85 45.37 5.73
2986 3497 4.624882 CAGAACAGCACAGTTAGATCTGTC 59.375 45.833 5.18 0.00 45.37 3.51
2997 3508 0.947244 GGACAACCAGAACAGCACAG 59.053 55.000 0.00 0.00 35.97 3.66
3062 3573 7.028361 GGCTACGGAACAATCTATCATAGTAC 58.972 42.308 0.00 0.00 0.00 2.73
3063 3574 6.717997 TGGCTACGGAACAATCTATCATAGTA 59.282 38.462 0.00 0.00 0.00 1.82
3066 3590 5.538813 ACTGGCTACGGAACAATCTATCATA 59.461 40.000 0.00 0.00 0.00 2.15
3278 3847 3.765511 AGATAACAACACTTGCATGCCAT 59.234 39.130 16.68 0.00 0.00 4.40
3389 3963 2.753452 AGAGATTGTGCATGCCTTCTTG 59.247 45.455 16.68 0.00 0.00 3.02
3397 3971 2.862536 CGTGTAGGAGAGATTGTGCATG 59.137 50.000 0.00 0.00 0.00 4.06
3399 3973 1.404181 GCGTGTAGGAGAGATTGTGCA 60.404 52.381 0.00 0.00 0.00 4.57
3434 4008 5.588648 GCAGGTTTACATTAGGCAATAGACA 59.411 40.000 0.00 0.00 0.00 3.41
3561 4141 2.751913 CCTCTCGACTAGCACGCGT 61.752 63.158 5.58 5.58 0.00 6.01
3727 4310 3.616560 CGGTTAGGCTGCTTCTGAAGTTA 60.617 47.826 17.97 7.61 0.00 2.24
3728 4311 2.784347 GGTTAGGCTGCTTCTGAAGTT 58.216 47.619 17.97 3.30 0.00 2.66
3729 4312 1.338200 CGGTTAGGCTGCTTCTGAAGT 60.338 52.381 17.97 1.38 0.00 3.01
3749 4332 3.617263 CCTGTGTAAAGCTATTGTCGGTC 59.383 47.826 0.00 0.00 0.00 4.79
3750 4333 3.259876 TCCTGTGTAAAGCTATTGTCGGT 59.740 43.478 0.00 0.00 0.00 4.69
3751 4334 3.857052 TCCTGTGTAAAGCTATTGTCGG 58.143 45.455 0.00 0.00 0.00 4.79
3752 4335 3.865745 CCTCCTGTGTAAAGCTATTGTCG 59.134 47.826 0.00 0.00 0.00 4.35
3790 4373 2.866085 ATCAGTGCTTGCCGGAGCTC 62.866 60.000 15.49 4.71 43.11 4.09
3821 4404 1.769098 CGCTGCAGATGGTTCATCGG 61.769 60.000 20.43 4.16 44.67 4.18
3869 4452 3.193479 ACGGCGATGATGCTATGAAGATA 59.807 43.478 16.62 0.00 34.52 1.98
3905 4488 1.265905 CCCACTCGCTACACCAAAAAC 59.734 52.381 0.00 0.00 0.00 2.43
3909 4492 0.901114 TAGCCCACTCGCTACACCAA 60.901 55.000 0.00 0.00 40.39 3.67
3910 4493 1.304630 TAGCCCACTCGCTACACCA 60.305 57.895 0.00 0.00 40.39 4.17
3920 4503 2.207189 ACACCCCACTAGCCCACT 59.793 61.111 0.00 0.00 0.00 4.00
3931 4514 2.520741 CCACCCACAACACACCCC 60.521 66.667 0.00 0.00 0.00 4.95
3952 4535 3.244353 ACAACTACATCAGCTTCTGCACT 60.244 43.478 0.00 0.00 42.74 4.40
3998 4584 2.109425 AACATCTTCTTACACCCCGC 57.891 50.000 0.00 0.00 0.00 6.13
3999 4585 2.747446 CCAAACATCTTCTTACACCCCG 59.253 50.000 0.00 0.00 0.00 5.73
4001 4587 5.557866 ACTACCAAACATCTTCTTACACCC 58.442 41.667 0.00 0.00 0.00 4.61
4022 4608 3.320541 GCTGATAGCCAGATCACACTACT 59.679 47.826 0.00 0.00 45.78 2.57
4054 4640 0.820871 AACCAGCAAACGGAAAGCAA 59.179 45.000 0.00 0.00 0.00 3.91
4055 4641 0.102120 CAACCAGCAAACGGAAAGCA 59.898 50.000 0.00 0.00 0.00 3.91
4163 4753 0.961019 TTCTGAACCCAGCAACATGC 59.039 50.000 0.00 0.00 45.46 4.06
4284 4875 5.112686 GGTTGGAGATGCTCTAACTACTTG 58.887 45.833 18.70 0.00 46.40 3.16
4297 4893 3.931907 TTATGGGACTGGTTGGAGATG 57.068 47.619 0.00 0.00 0.00 2.90
4307 4903 4.407365 AGGTGAACCTTTTTATGGGACTG 58.593 43.478 0.00 0.00 46.09 3.51
4321 4917 4.678622 CAAAAACCACTTGTAGGTGAACC 58.321 43.478 0.00 0.00 39.86 3.62
4331 4927 4.492247 CGTTGTTGATGCAAAAACCACTTG 60.492 41.667 13.64 1.17 38.06 3.16
4342 4938 1.971167 GGGGCTCGTTGTTGATGCA 60.971 57.895 0.00 0.00 0.00 3.96
4380 4976 5.123979 GCTTAAAAACCTGATGTCCGATCTT 59.876 40.000 0.00 0.00 0.00 2.40
4381 4977 4.636206 GCTTAAAAACCTGATGTCCGATCT 59.364 41.667 0.00 0.00 0.00 2.75
4382 4978 4.394920 TGCTTAAAAACCTGATGTCCGATC 59.605 41.667 0.00 0.00 0.00 3.69
4386 4982 4.220602 ACCATGCTTAAAAACCTGATGTCC 59.779 41.667 0.00 0.00 0.00 4.02
4395 4991 8.067780 ACGTTTGATTTACCATGCTTAAAAAC 57.932 30.769 2.82 0.00 0.00 2.43
4415 5011 4.596097 GCAATTTGCCATGAAAAACGTTT 58.404 34.783 7.96 7.96 37.42 3.60
4446 5042 1.213013 GCTCGCCGAAGAGACTTGA 59.787 57.895 10.59 0.00 40.57 3.02
4450 5046 1.880340 CCATGCTCGCCGAAGAGAC 60.880 63.158 10.59 3.83 40.57 3.36
4461 5057 1.683943 TGCTAGGATTTGCCATGCTC 58.316 50.000 0.00 0.00 40.02 4.26
4490 5092 5.273523 ACGTAGCAAATCTAACGGTTTTC 57.726 39.130 0.00 0.00 0.00 2.29
4491 5093 5.678132 AACGTAGCAAATCTAACGGTTTT 57.322 34.783 0.00 0.00 0.00 2.43
4492 5094 5.678132 AAACGTAGCAAATCTAACGGTTT 57.322 34.783 0.00 0.00 32.13 3.27
4493 5095 6.783892 TTAAACGTAGCAAATCTAACGGTT 57.216 33.333 0.00 0.00 36.47 4.44
4494 5096 6.783892 TTTAAACGTAGCAAATCTAACGGT 57.216 33.333 0.00 0.00 0.00 4.83
4495 5097 8.663771 ATTTTTAAACGTAGCAAATCTAACGG 57.336 30.769 0.00 0.00 0.00 4.44
4524 5126 0.680921 CCCCGCCACAAATCTGATGT 60.681 55.000 0.00 0.00 0.00 3.06
4560 5162 4.488770 ACACCCCATAAAACCACTTTCAT 58.511 39.130 0.00 0.00 0.00 2.57
4584 5548 5.833340 AGCAAACCACCCCTAAATTATACA 58.167 37.500 0.00 0.00 0.00 2.29
4658 5622 8.739972 GTTCACTGAATAACATTACCCAATTCT 58.260 33.333 0.00 0.00 0.00 2.40
4659 5623 8.519526 TGTTCACTGAATAACATTACCCAATTC 58.480 33.333 0.00 0.00 30.88 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.