Multiple sequence alignment - TraesCS5D01G358900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G358900 chr5D 100.000 5250 0 0 1 5250 438577764 438572515 0.000000e+00 9696.0
1 TraesCS5D01G358900 chr5D 78.990 1109 189 34 2805 3889 438438811 438437723 0.000000e+00 717.0
2 TraesCS5D01G358900 chr5D 76.040 1490 292 42 2805 4254 438545160 438543696 0.000000e+00 713.0
3 TraesCS5D01G358900 chr5D 75.778 1511 294 48 2805 4266 438722364 438720877 0.000000e+00 697.0
4 TraesCS5D01G358900 chr5D 75.589 1315 282 31 1123 2413 438441243 438439944 9.660000e-172 614.0
5 TraesCS5D01G358900 chr5D 77.335 1103 206 35 2805 3889 438559062 438557986 3.480000e-171 612.0
6 TraesCS5D01G358900 chr5D 73.468 1387 316 36 1084 2435 438592024 438590655 4.760000e-130 475.0
7 TraesCS5D01G358900 chr5D 72.903 1395 314 50 1083 2442 438547396 438546031 1.750000e-114 424.0
8 TraesCS5D01G358900 chr5D 100.000 35 0 0 4422 4456 438573257 438573223 1.220000e-06 65.8
9 TraesCS5D01G358900 chr5D 100.000 35 0 0 4508 4542 438573343 438573309 1.220000e-06 65.8
10 TraesCS5D01G358900 chr5A 89.654 2484 196 25 347 2795 554192606 554190149 0.000000e+00 3107.0
11 TraesCS5D01G358900 chr5A 94.636 1510 73 7 2801 4309 554189803 554188301 0.000000e+00 2333.0
12 TraesCS5D01G358900 chr5A 80.955 1843 297 24 830 2640 554057133 554055313 0.000000e+00 1410.0
13 TraesCS5D01G358900 chr5A 80.585 1504 218 42 2807 4276 554054805 554053342 0.000000e+00 1092.0
14 TraesCS5D01G358900 chr5A 86.645 629 48 9 4542 5168 554188159 554187565 0.000000e+00 664.0
15 TraesCS5D01G358900 chr5A 75.208 1440 299 37 2855 4255 554236112 554234692 3.450000e-176 628.0
16 TraesCS5D01G358900 chr5A 76.407 1102 221 29 2805 3885 554218686 554217603 4.590000e-155 558.0
17 TraesCS5D01G358900 chr5A 91.193 352 28 3 1 350 554193008 554192658 4.760000e-130 475.0
18 TraesCS5D01G358900 chr5A 73.519 1401 309 40 1083 2438 554203787 554202404 4.760000e-130 475.0
19 TraesCS5D01G358900 chr5A 94.656 131 5 2 4368 4498 554188294 554188166 8.910000e-48 202.0
20 TraesCS5D01G358900 chr5A 100.000 35 0 0 4508 4542 554188242 554188208 1.220000e-06 65.8
21 TraesCS5D01G358900 chr5B 87.425 2330 249 27 342 2641 533482061 533479746 0.000000e+00 2639.0
22 TraesCS5D01G358900 chr5B 89.261 1732 144 22 2799 4501 533479106 533477388 0.000000e+00 2130.0
23 TraesCS5D01G358900 chr5B 75.100 1494 312 42 2805 4259 533573057 533571585 1.230000e-180 643.0
24 TraesCS5D01G358900 chr5B 84.627 657 47 18 4592 5248 533477393 533476791 5.820000e-169 604.0
25 TraesCS5D01G358900 chr5B 74.047 1391 307 39 1084 2438 533496612 533495240 2.170000e-143 520.0
26 TraesCS5D01G358900 chr5B 72.171 1308 318 36 1084 2365 533525312 533524025 1.800000e-94 357.0
27 TraesCS5D01G358900 chr5B 87.446 231 25 4 122 350 533482337 533482109 4.030000e-66 263.0
28 TraesCS5D01G358900 chr5B 89.583 144 14 1 798 940 533576102 533575959 1.160000e-41 182.0
29 TraesCS5D01G358900 chr5B 79.435 248 46 5 4009 4254 533105132 533104888 2.510000e-38 171.0
30 TraesCS5D01G358900 chr5B 85.000 140 10 4 798 936 533526033 533525904 1.190000e-26 132.0
31 TraesCS5D01G358900 chr5B 90.476 84 7 1 1 84 533482416 533482334 5.560000e-20 110.0
32 TraesCS5D01G358900 chr5B 94.286 35 2 0 4508 4542 533477467 533477433 3.000000e-03 54.7
33 TraesCS5D01G358900 chr3B 81.684 1496 207 43 2801 4260 9569952 9568488 0.000000e+00 1182.0
34 TraesCS5D01G358900 chr3D 81.272 1431 203 42 2859 4260 7498355 7496961 0.000000e+00 1098.0
35 TraesCS5D01G358900 chr3D 74.039 1587 332 54 1102 2653 7501573 7500032 4.560000e-160 575.0
36 TraesCS5D01G358900 chr2B 76.611 1505 284 46 2795 4254 20146458 20147939 0.000000e+00 767.0
37 TraesCS5D01G358900 chr7D 75.683 1390 274 50 2898 4254 101732744 101734102 2.060000e-178 636.0
38 TraesCS5D01G358900 chr7B 75.090 1389 275 50 2898 4254 59066423 59067772 2.720000e-162 582.0
39 TraesCS5D01G358900 chr2A 79.880 333 63 3 3939 4269 14739514 14739184 1.890000e-59 241.0
40 TraesCS5D01G358900 chr6D 100.000 28 0 0 4895 4922 390725833 390725806 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G358900 chr5D 438572515 438577764 5249 True 9696.000000 9696 100.000000 1 5250 1 chr5D.!!$R2 5249
1 TraesCS5D01G358900 chr5D 438720877 438722364 1487 True 697.000000 697 75.778000 2805 4266 1 chr5D.!!$R4 1461
2 TraesCS5D01G358900 chr5D 438437723 438441243 3520 True 665.500000 717 77.289500 1123 3889 2 chr5D.!!$R5 2766
3 TraesCS5D01G358900 chr5D 438557986 438559062 1076 True 612.000000 612 77.335000 2805 3889 1 chr5D.!!$R1 1084
4 TraesCS5D01G358900 chr5D 438543696 438547396 3700 True 568.500000 713 74.471500 1083 4254 2 chr5D.!!$R6 3171
5 TraesCS5D01G358900 chr5D 438590655 438592024 1369 True 475.000000 475 73.468000 1084 2435 1 chr5D.!!$R3 1351
6 TraesCS5D01G358900 chr5A 554053342 554057133 3791 True 1251.000000 1410 80.770000 830 4276 2 chr5A.!!$R4 3446
7 TraesCS5D01G358900 chr5A 554187565 554193008 5443 True 1141.133333 3107 92.797333 1 5168 6 chr5A.!!$R5 5167
8 TraesCS5D01G358900 chr5A 554234692 554236112 1420 True 628.000000 628 75.208000 2855 4255 1 chr5A.!!$R3 1400
9 TraesCS5D01G358900 chr5A 554217603 554218686 1083 True 558.000000 558 76.407000 2805 3885 1 chr5A.!!$R2 1080
10 TraesCS5D01G358900 chr5A 554202404 554203787 1383 True 475.000000 475 73.519000 1083 2438 1 chr5A.!!$R1 1355
11 TraesCS5D01G358900 chr5B 533476791 533482416 5625 True 966.783333 2639 88.920167 1 5248 6 chr5B.!!$R3 5247
12 TraesCS5D01G358900 chr5B 533495240 533496612 1372 True 520.000000 520 74.047000 1084 2438 1 chr5B.!!$R2 1354
13 TraesCS5D01G358900 chr5B 533571585 533576102 4517 True 412.500000 643 82.341500 798 4259 2 chr5B.!!$R5 3461
14 TraesCS5D01G358900 chr5B 533524025 533526033 2008 True 244.500000 357 78.585500 798 2365 2 chr5B.!!$R4 1567
15 TraesCS5D01G358900 chr3B 9568488 9569952 1464 True 1182.000000 1182 81.684000 2801 4260 1 chr3B.!!$R1 1459
16 TraesCS5D01G358900 chr3D 7496961 7501573 4612 True 836.500000 1098 77.655500 1102 4260 2 chr3D.!!$R1 3158
17 TraesCS5D01G358900 chr2B 20146458 20147939 1481 False 767.000000 767 76.611000 2795 4254 1 chr2B.!!$F1 1459
18 TraesCS5D01G358900 chr7D 101732744 101734102 1358 False 636.000000 636 75.683000 2898 4254 1 chr7D.!!$F1 1356
19 TraesCS5D01G358900 chr7B 59066423 59067772 1349 False 582.000000 582 75.090000 2898 4254 1 chr7B.!!$F1 1356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 611 0.033504 GGTCTTCTGAAGCACGTGGA 59.966 55.000 18.88 2.12 0.00 4.02 F
783 848 0.106708 GACCAGCTGAGTTCACACCA 59.893 55.000 17.39 0.00 0.00 4.17 F
1128 1770 0.108424 CTCTCACCTGCTACACTGCC 60.108 60.000 0.00 0.00 0.00 4.85 F
1957 2640 0.325577 TAGCAGCTCCTCCACATGGA 60.326 55.000 0.00 0.00 43.08 3.41 F
2271 2967 1.146041 TCGCAACTGCTCCTGTGTT 59.854 52.632 0.00 0.00 39.32 3.32 F
2297 2993 1.271108 TGCATTCGTCAACCTAGGCAA 60.271 47.619 9.30 0.00 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2684 0.035739 AGCCGTACGGACCACAAAAT 59.964 50.000 37.62 8.34 37.50 1.82 R
2230 2919 0.036952 CACTCCGATGCACACTCCTT 60.037 55.000 0.00 0.00 0.00 3.36 R
2981 6316 2.507407 TGTAGACCTTGCCAAATCCC 57.493 50.000 0.00 0.00 0.00 3.85 R
3405 6792 1.351017 ACCGTGATGTCCAATCCAACT 59.649 47.619 0.00 0.00 0.00 3.16 R
4125 7599 0.694444 AGTGGGGAGTGGAAGTGTGT 60.694 55.000 0.00 0.00 0.00 3.72 R
4277 7778 1.106351 TTTCTTGGAAAGGCGCTGCA 61.106 50.000 7.64 0.00 46.24 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 4.441415 GGTTCAATGATCGACGTCATACTC 59.559 45.833 17.16 6.54 37.85 2.59
112 113 5.274718 GTTCAATGATCGACGTCATACTCT 58.725 41.667 17.16 0.00 37.85 3.24
120 121 7.527457 TGATCGACGTCATACTCTTATTATGG 58.473 38.462 17.16 0.00 0.00 2.74
140 141 8.764524 TTATGGTATTTGGTTAATTGTGCAAC 57.235 30.769 0.00 0.00 37.35 4.17
147 148 5.950758 TGGTTAATTGTGCAACGTAGAAT 57.049 34.783 0.00 0.00 42.39 2.40
164 165 9.953697 AACGTAGAATACTCAGTCAAGATATTC 57.046 33.333 0.00 0.00 40.12 1.75
197 198 5.171476 ACATGGACTAGAACAAGACATTCG 58.829 41.667 0.00 0.00 0.00 3.34
201 202 5.869344 TGGACTAGAACAAGACATTCGAATG 59.131 40.000 31.51 31.51 42.10 2.67
214 215 1.349234 TCGAATGCACATGACTGACG 58.651 50.000 0.00 0.00 0.00 4.35
242 243 9.837525 GAATTATTCTGTAGATGGATGCAATTC 57.162 33.333 0.00 0.00 0.00 2.17
247 248 7.707624 TCTGTAGATGGATGCAATTCTTTTT 57.292 32.000 0.00 0.00 0.00 1.94
259 260 7.288810 TGCAATTCTTTTTCCATGTACTCTT 57.711 32.000 0.00 0.00 0.00 2.85
269 270 7.815840 TTTCCATGTACTCTTGAACATTCAA 57.184 32.000 6.85 6.85 44.31 2.69
279 280 4.829064 TTGAACATTCAAGTTCTTCCGG 57.171 40.909 2.89 0.00 46.19 5.14
304 305 8.564574 GGAAGTTGTGTCATACATTTCTAACAA 58.435 33.333 0.00 0.00 39.48 2.83
345 346 3.263369 TCAACACCACCCTACTTCCTA 57.737 47.619 0.00 0.00 0.00 2.94
458 517 4.901849 TCACCCTGTTATTCATCCTCCTAG 59.098 45.833 0.00 0.00 0.00 3.02
461 520 4.901849 CCCTGTTATTCATCCTCCTAGTCA 59.098 45.833 0.00 0.00 0.00 3.41
480 539 0.815213 ATGCTGTCGTTGTGTGTGCT 60.815 50.000 0.00 0.00 0.00 4.40
525 587 4.883585 GTCAGATGATAATTGGTGCCTTCA 59.116 41.667 0.00 0.00 0.00 3.02
536 598 1.168714 GTGCCTTCACCATGGTCTTC 58.831 55.000 16.53 3.33 37.24 2.87
549 611 0.033504 GGTCTTCTGAAGCACGTGGA 59.966 55.000 18.88 2.12 0.00 4.02
587 649 3.587797 TTATGAGTGTCCAAGTCGACC 57.412 47.619 13.01 0.00 31.35 4.79
622 684 3.305720 TCCTCAGTCAACTGTTGGTAGT 58.694 45.455 19.55 2.47 44.12 2.73
647 712 7.933577 GTCCTTGGATCAAAATTTTCCTTTTCT 59.066 33.333 0.00 0.00 0.00 2.52
648 713 8.493607 TCCTTGGATCAAAATTTTCCTTTTCTT 58.506 29.630 0.00 0.00 0.00 2.52
670 735 0.247655 CCAATTGCACGAATCGGACG 60.248 55.000 7.80 0.00 0.00 4.79
674 739 0.938713 TTGCACGAATCGGACGTTTT 59.061 45.000 7.80 0.00 42.07 2.43
751 816 2.004017 TGACGTTTGGATTCATACCGC 58.996 47.619 0.00 0.00 0.00 5.68
783 848 0.106708 GACCAGCTGAGTTCACACCA 59.893 55.000 17.39 0.00 0.00 4.17
784 849 0.546122 ACCAGCTGAGTTCACACCAA 59.454 50.000 17.39 0.00 0.00 3.67
789 854 1.195448 GCTGAGTTCACACCAACGATG 59.805 52.381 0.00 0.00 0.00 3.84
790 855 1.195448 CTGAGTTCACACCAACGATGC 59.805 52.381 0.00 0.00 0.00 3.91
791 856 0.517316 GAGTTCACACCAACGATGCC 59.483 55.000 0.00 0.00 0.00 4.40
792 857 1.206578 GTTCACACCAACGATGCCG 59.793 57.895 0.00 0.00 42.50 5.69
827 912 3.057736 CAGCTGAAATGTCAACTCCAAGG 60.058 47.826 8.42 0.00 31.88 3.61
828 913 2.887152 GCTGAAATGTCAACTCCAAGGT 59.113 45.455 0.00 0.00 31.88 3.50
832 917 5.063204 TGAAATGTCAACTCCAAGGTACTG 58.937 41.667 0.00 0.00 40.86 2.74
925 1014 2.167662 GGATCCGGTCACCAATTTGTT 58.832 47.619 0.00 0.00 0.00 2.83
1049 1677 7.488471 ACTGAACAAGCTACGATTAGTACATTC 59.512 37.037 0.00 0.00 0.00 2.67
1080 1716 1.063806 GCACGTACTGCAGAAGACTG 58.936 55.000 23.35 14.40 46.29 3.51
1128 1770 0.108424 CTCTCACCTGCTACACTGCC 60.108 60.000 0.00 0.00 0.00 4.85
1182 1835 2.577059 GACGATCGGCTTGTCCCA 59.423 61.111 20.98 0.00 32.75 4.37
1263 1916 0.473694 TCTTCAGCCCCTCCAACTCA 60.474 55.000 0.00 0.00 0.00 3.41
1318 1979 1.522569 GGCATACCGGAGCTCACTT 59.477 57.895 17.19 0.39 0.00 3.16
1473 2143 2.279120 GATGCCTCGAGCTCCGTG 60.279 66.667 6.99 4.55 44.23 4.94
1957 2640 0.325577 TAGCAGCTCCTCCACATGGA 60.326 55.000 0.00 0.00 43.08 3.41
1981 2664 3.220999 CTCGACAAGTGGCCGTCCA 62.221 63.158 0.00 0.00 40.85 4.02
2001 2684 1.280710 ACTGAATGCAACCGGTATGGA 59.719 47.619 8.00 10.60 42.00 3.41
2050 2739 2.910479 CAGCGATGCCCATGCCAT 60.910 61.111 0.00 0.00 36.33 4.40
2230 2919 1.814394 GCAGGAACATGAGCACATTGA 59.186 47.619 0.00 0.00 34.15 2.57
2271 2967 1.146041 TCGCAACTGCTCCTGTGTT 59.854 52.632 0.00 0.00 39.32 3.32
2297 2993 1.271108 TGCATTCGTCAACCTAGGCAA 60.271 47.619 9.30 0.00 0.00 4.52
2332 3031 2.398498 GAGATGTGACGCGATGCTTAT 58.602 47.619 15.93 0.00 0.00 1.73
2366 3065 4.515191 GGAGTTGATTGACACAGCAAAGTA 59.485 41.667 0.00 0.00 0.00 2.24
2371 3070 1.533625 TGACACAGCAAAGTATGGCC 58.466 50.000 0.00 0.00 0.00 5.36
2448 3178 4.640647 GCTGGTACCAAATTTTCTCCCTAG 59.359 45.833 17.11 0.00 0.00 3.02
2451 3187 5.489637 TGGTACCAAATTTTCTCCCTAGCTA 59.510 40.000 13.60 0.00 0.00 3.32
2462 3198 9.975218 ATTTTCTCCCTAGCTATTTCTTGTTAA 57.025 29.630 0.00 0.00 0.00 2.01
2730 3685 9.167311 AGACTACAAAATCTTATAAAGGCACTG 57.833 33.333 0.00 0.00 40.86 3.66
2738 3693 7.661536 ATCTTATAAAGGCACTGAGTACAGA 57.338 36.000 0.00 0.00 46.03 3.41
2760 3800 7.951245 ACAGAAAACAATACCAAATAACCCCTA 59.049 33.333 0.00 0.00 0.00 3.53
2853 6188 5.886960 ACACAAGAAGCCTACATTTGATC 57.113 39.130 0.00 0.00 0.00 2.92
2981 6316 4.785301 AGACATGTATGATTGGACAAGGG 58.215 43.478 0.00 0.00 0.00 3.95
3405 6792 9.676861 ATGTACAGATGATTCAAGAAGAATGAA 57.323 29.630 0.33 0.00 46.76 2.57
3646 7035 8.322091 ACATAGTGAGTAACCTTTTCAGCTTAT 58.678 33.333 0.00 0.00 0.00 1.73
3778 7196 3.664107 TGATGTCTACAGCTTTGGTGTC 58.336 45.455 5.66 0.00 43.42 3.67
3993 7452 4.371624 AGACAGATGAATTGGTGGACAA 57.628 40.909 0.00 0.00 44.54 3.18
3999 7458 8.225603 ACAGATGAATTGGTGGACAAATATAC 57.774 34.615 0.00 0.00 43.46 1.47
4125 7599 3.096852 TCATCCTAGAGAACGGAAGCAA 58.903 45.455 0.00 0.00 32.12 3.91
4165 7639 0.036671 GCCCTGCCTACTTTACACGT 60.037 55.000 0.00 0.00 0.00 4.49
4291 7792 1.902918 ATGTTGCAGCGCCTTTCCA 60.903 52.632 2.29 0.00 0.00 3.53
4294 7795 1.528076 TTGCAGCGCCTTTCCAAGA 60.528 52.632 2.29 0.00 0.00 3.02
4295 7796 1.106351 TTGCAGCGCCTTTCCAAGAA 61.106 50.000 2.29 0.00 0.00 2.52
4309 7810 7.219322 CCTTTCCAAGAAAAACATCTTCCAAT 58.781 34.615 0.00 0.00 37.56 3.16
4314 7815 7.710475 TCCAAGAAAAACATCTTCCAATTGTTC 59.290 33.333 4.43 0.00 37.56 3.18
4318 7819 5.376854 AAACATCTTCCAATTGTTCTCCG 57.623 39.130 4.43 0.00 32.66 4.63
4319 7820 3.347216 ACATCTTCCAATTGTTCTCCGG 58.653 45.455 4.43 0.00 0.00 5.14
4357 7858 4.456911 GCTGTTTGGAAGTCATCATCTTCA 59.543 41.667 7.74 0.00 41.88 3.02
4361 7862 7.780064 TGTTTGGAAGTCATCATCTTCAAAAA 58.220 30.769 9.00 6.01 42.60 1.94
4393 7895 7.856145 TGTATTTCATTTTGTTGCCTTGTTT 57.144 28.000 0.00 0.00 0.00 2.83
4408 7910 9.435688 GTTGCCTTGTTTATATGGAAAGAAAAT 57.564 29.630 0.00 0.00 0.00 1.82
4501 8003 2.039084 AGGTAGGGAGTTGCTTTCACTG 59.961 50.000 0.00 0.00 29.47 3.66
4502 8004 2.038557 GGTAGGGAGTTGCTTTCACTGA 59.961 50.000 0.00 0.00 29.47 3.41
4503 8005 2.262423 AGGGAGTTGCTTTCACTGAC 57.738 50.000 0.00 0.00 0.00 3.51
4505 8007 2.092429 AGGGAGTTGCTTTCACTGACAA 60.092 45.455 0.00 0.00 0.00 3.18
4506 8008 2.033424 GGGAGTTGCTTTCACTGACAAC 59.967 50.000 0.00 0.00 42.08 3.32
4508 8010 3.316308 GGAGTTGCTTTCACTGACAACAT 59.684 43.478 11.54 0.88 43.74 2.71
4510 8012 5.008613 GGAGTTGCTTTCACTGACAACATAA 59.991 40.000 11.54 0.00 43.74 1.90
4511 8013 6.294176 GGAGTTGCTTTCACTGACAACATAAT 60.294 38.462 11.54 0.00 43.74 1.28
4512 8014 7.094805 GGAGTTGCTTTCACTGACAACATAATA 60.095 37.037 11.54 0.00 43.74 0.98
4513 8015 8.340618 AGTTGCTTTCACTGACAACATAATAT 57.659 30.769 11.54 0.00 43.74 1.28
4514 8016 8.454106 AGTTGCTTTCACTGACAACATAATATC 58.546 33.333 11.54 0.00 43.74 1.63
4515 8017 7.920160 TGCTTTCACTGACAACATAATATCA 57.080 32.000 0.00 0.00 0.00 2.15
4516 8018 8.510243 TGCTTTCACTGACAACATAATATCAT 57.490 30.769 0.00 0.00 0.00 2.45
4517 8019 8.400186 TGCTTTCACTGACAACATAATATCATG 58.600 33.333 0.00 0.00 0.00 3.07
4518 8020 8.615211 GCTTTCACTGACAACATAATATCATGA 58.385 33.333 0.00 0.00 0.00 3.07
4521 8023 9.671279 TTCACTGACAACATAATATCATGAACT 57.329 29.630 0.00 0.00 0.00 3.01
4522 8024 9.671279 TCACTGACAACATAATATCATGAACTT 57.329 29.630 0.00 0.00 0.00 2.66
4535 8037 9.683069 AATATCATGAACTTTCAAACTGACAAC 57.317 29.630 0.00 0.00 41.13 3.32
4536 8038 6.507958 TCATGAACTTTCAAACTGACAACA 57.492 33.333 0.00 0.00 41.13 3.33
4537 8039 7.099266 TCATGAACTTTCAAACTGACAACAT 57.901 32.000 0.00 0.00 41.13 2.71
4538 8040 8.219546 TCATGAACTTTCAAACTGACAACATA 57.780 30.769 0.00 0.00 41.13 2.29
4539 8041 8.681806 TCATGAACTTTCAAACTGACAACATAA 58.318 29.630 0.00 0.00 41.13 1.90
4540 8042 8.745837 CATGAACTTTCAAACTGACAACATAAC 58.254 33.333 0.00 0.00 41.13 1.89
4541 8043 7.821652 TGAACTTTCAAACTGACAACATAACA 58.178 30.769 0.00 0.00 33.55 2.41
4542 8044 8.465999 TGAACTTTCAAACTGACAACATAACAT 58.534 29.630 0.00 0.00 33.55 2.71
4543 8045 9.301153 GAACTTTCAAACTGACAACATAACATT 57.699 29.630 0.00 0.00 0.00 2.71
4545 8047 9.950680 ACTTTCAAACTGACAACATAACATTAG 57.049 29.630 0.00 0.00 0.00 1.73
4550 8052 8.853345 CAAACTGACAACATAACATTAGAATGC 58.147 33.333 2.09 0.00 40.04 3.56
4574 8076 7.026631 CACATTTGTGTTTACCTTGAAGAGA 57.973 36.000 2.48 0.00 40.96 3.10
4606 8108 0.523072 CTTGTTCATTCGGCCCACTG 59.477 55.000 0.00 0.00 0.00 3.66
4679 8181 1.656652 ATCCATCTTTTCCGCACGAG 58.343 50.000 0.00 0.00 0.00 4.18
4697 8199 4.789075 GGCGCCATTGCTGCACTG 62.789 66.667 24.80 12.51 38.29 3.66
4701 8203 2.036098 CCATTGCTGCACTGGGGA 59.964 61.111 26.25 1.42 31.69 4.81
4719 8221 3.444034 GGGGAAGTTCATAAAGGAGCAAC 59.556 47.826 5.01 0.00 0.00 4.17
4722 8224 5.163612 GGGAAGTTCATAAAGGAGCAACATC 60.164 44.000 5.01 0.00 0.00 3.06
4766 8268 0.318869 CATTTTCAGGCTGCAACGCA 60.319 50.000 10.34 0.00 36.92 5.24
4771 8273 4.609018 AGGCTGCAACGCACGACT 62.609 61.111 0.50 0.00 33.79 4.18
4773 8275 2.100631 GGCTGCAACGCACGACTAT 61.101 57.895 0.50 0.00 33.79 2.12
4781 8283 3.704843 GCACGACTATGCGCATGA 58.295 55.556 32.48 15.16 35.50 3.07
4782 8284 1.561730 GCACGACTATGCGCATGAG 59.438 57.895 32.48 24.47 35.50 2.90
4783 8285 1.561730 CACGACTATGCGCATGAGC 59.438 57.895 32.48 15.17 37.71 4.26
4790 8292 2.344872 TGCGCATGAGCACAGACT 59.655 55.556 20.84 0.00 42.92 3.24
4791 8293 1.591183 TGCGCATGAGCACAGACTA 59.409 52.632 20.84 0.00 42.92 2.59
4792 8294 0.176449 TGCGCATGAGCACAGACTAT 59.824 50.000 20.84 0.00 42.92 2.12
4793 8295 0.580578 GCGCATGAGCACAGACTATG 59.419 55.000 17.16 0.00 42.27 2.23
4794 8296 0.580578 CGCATGAGCACAGACTATGC 59.419 55.000 0.00 0.00 43.74 3.14
4798 8300 0.176449 TGAGCACAGACTATGCGCAT 59.824 50.000 28.23 28.23 46.10 4.73
4799 8301 2.070539 TGAGCACAGACTATGCGCATG 61.071 52.381 32.48 22.79 46.10 4.06
4824 8326 0.536460 AAGGGGTTGTGCGGTTAGTG 60.536 55.000 0.00 0.00 0.00 2.74
4911 8413 9.303537 CTACTAAATTTCTTTTCTACTCCTCCG 57.696 37.037 0.00 0.00 0.00 4.63
4912 8414 7.677892 ACTAAATTTCTTTTCTACTCCTCCGT 58.322 34.615 0.00 0.00 0.00 4.69
4913 8415 7.818446 ACTAAATTTCTTTTCTACTCCTCCGTC 59.182 37.037 0.00 0.00 0.00 4.79
4914 8416 4.532314 TTTCTTTTCTACTCCTCCGTCC 57.468 45.455 0.00 0.00 0.00 4.79
4915 8417 2.454538 TCTTTTCTACTCCTCCGTCCC 58.545 52.381 0.00 0.00 0.00 4.46
4916 8418 2.176889 CTTTTCTACTCCTCCGTCCCA 58.823 52.381 0.00 0.00 0.00 4.37
4917 8419 2.544844 TTTCTACTCCTCCGTCCCAT 57.455 50.000 0.00 0.00 0.00 4.00
4926 8428 4.771054 ACTCCTCCGTCCCATAATACATAC 59.229 45.833 0.00 0.00 0.00 2.39
4935 8437 8.579006 CCGTCCCATAATACATACTACAAACTA 58.421 37.037 0.00 0.00 0.00 2.24
4967 8469 0.390603 TGGAATTACCACACGAGCGG 60.391 55.000 0.00 0.00 44.64 5.52
5101 8603 2.304751 ACTTTTGACGACCGAGTTGT 57.695 45.000 0.00 0.00 32.15 3.32
5116 8618 7.448748 ACCGAGTTGTTTAAGCTAAATCAAT 57.551 32.000 0.00 0.00 0.00 2.57
5218 8720 9.520515 AGGACAACAATATATTTGTTCTGTCTT 57.479 29.630 20.30 15.76 39.64 3.01
5219 8721 9.774742 GGACAACAATATATTTGTTCTGTCTTC 57.225 33.333 20.30 11.11 40.30 2.87
5248 8750 1.982395 ATGTCGTCTCTTCGCCCCA 60.982 57.895 0.00 0.00 0.00 4.96
5249 8751 2.126031 GTCGTCTCTTCGCCCCAC 60.126 66.667 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.439500 TCTACATAACCACTTTGTACCATTAAC 57.561 33.333 0.00 0.00 0.00 2.01
19 20 9.439500 GTCTACATAACCACTTTGTACCATTAA 57.561 33.333 0.00 0.00 0.00 1.40
102 103 9.706691 ACCAAATACCATAATAAGAGTATGACG 57.293 33.333 0.00 0.00 31.71 4.35
120 121 7.299586 TCTACGTTGCACAATTAACCAAATAC 58.700 34.615 0.00 0.00 0.00 1.89
197 198 0.247419 CGCGTCAGTCATGTGCATTC 60.247 55.000 0.00 0.00 0.00 2.67
201 202 0.443869 AATTCGCGTCAGTCATGTGC 59.556 50.000 5.77 0.00 0.00 4.57
214 215 5.409520 TGCATCCATCTACAGAATAATTCGC 59.590 40.000 0.00 0.00 34.02 4.70
242 243 8.352201 TGAATGTTCAAGAGTACATGGAAAAAG 58.648 33.333 0.00 0.00 36.12 2.27
259 260 4.079980 TCCGGAAGAACTTGAATGTTCA 57.920 40.909 0.00 0.00 46.19 3.18
269 270 2.169769 TGACACAACTTCCGGAAGAACT 59.830 45.455 43.20 26.40 40.79 3.01
278 279 8.094798 TGTTAGAAATGTATGACACAACTTCC 57.905 34.615 0.00 0.00 41.55 3.46
306 307 9.547753 GGTGTTGAAGAGCATATAGAAAGATTA 57.452 33.333 0.00 0.00 0.00 1.75
345 346 1.275010 GGGTTTCCCGCATCATTTGTT 59.725 47.619 0.00 0.00 32.13 2.83
458 517 0.937304 ACACACAACGACAGCATGAC 59.063 50.000 0.00 0.00 39.69 3.06
461 520 0.815213 AGCACACACAACGACAGCAT 60.815 50.000 0.00 0.00 0.00 3.79
480 539 0.107081 AATCGTTGGTGGTTGGTCGA 59.893 50.000 0.00 0.00 0.00 4.20
525 587 1.609061 CGTGCTTCAGAAGACCATGGT 60.609 52.381 19.89 19.89 0.00 3.55
536 598 2.163818 TTTACCTCCACGTGCTTCAG 57.836 50.000 10.91 2.58 0.00 3.02
587 649 5.551233 TGACTGAGGATTAACTGTTTCCAG 58.449 41.667 12.48 5.81 44.68 3.86
622 684 8.033178 AGAAAAGGAAAATTTTGATCCAAGGA 57.967 30.769 8.47 0.00 35.62 3.36
647 712 2.940147 CCGATTCGTGCAATTGGAAAA 58.060 42.857 7.72 3.10 46.23 2.29
648 713 2.627863 CCGATTCGTGCAATTGGAAA 57.372 45.000 7.72 0.00 46.23 3.13
670 735 4.035017 CACTCACAATGTTCGGTCAAAAC 58.965 43.478 0.00 0.00 0.00 2.43
674 739 2.613026 ACACTCACAATGTTCGGTCA 57.387 45.000 0.00 0.00 0.00 4.02
783 848 1.076533 CACGTAAGAGCGGCATCGTT 61.077 55.000 1.45 0.00 43.62 3.85
784 849 1.516386 CACGTAAGAGCGGCATCGT 60.516 57.895 1.45 2.57 43.62 3.73
789 854 1.805945 CTGTCCACGTAAGAGCGGC 60.806 63.158 0.00 0.00 43.62 6.53
790 855 1.805945 GCTGTCCACGTAAGAGCGG 60.806 63.158 3.91 0.00 43.62 5.52
791 856 1.073216 CAGCTGTCCACGTAAGAGCG 61.073 60.000 5.25 5.58 37.29 5.03
792 857 0.243907 TCAGCTGTCCACGTAAGAGC 59.756 55.000 14.67 10.28 43.62 4.09
827 912 3.637998 TCTGGTTCGAGTTGACAGTAC 57.362 47.619 0.00 0.00 0.00 2.73
828 913 4.866508 ATTCTGGTTCGAGTTGACAGTA 57.133 40.909 0.00 0.00 0.00 2.74
832 917 5.418310 TTTGAATTCTGGTTCGAGTTGAC 57.582 39.130 7.05 0.00 0.00 3.18
1033 1661 5.921408 GGCAAGGAGAATGTACTAATCGTAG 59.079 44.000 0.00 0.00 0.00 3.51
1080 1716 2.031516 CATGGATCGATCAGGCCGC 61.032 63.158 25.93 8.76 0.00 6.53
1128 1770 1.415659 AGGAAGAGAATGATCAGGGCG 59.584 52.381 0.09 0.00 0.00 6.13
1263 1916 2.606519 TACAGGCTGGCCGGAGTT 60.607 61.111 18.31 0.00 41.95 3.01
1318 1979 1.378646 TGTTGGCGACCCACACAAA 60.379 52.632 1.61 0.00 41.97 2.83
1950 2633 4.509230 CACTTGTCGAGGATAATCCATGTG 59.491 45.833 0.00 0.00 39.61 3.21
1957 2640 1.202533 CGGCCACTTGTCGAGGATAAT 60.203 52.381 2.24 0.00 0.00 1.28
1981 2664 1.280710 TCCATACCGGTTGCATTCAGT 59.719 47.619 15.04 0.00 35.57 3.41
2001 2684 0.035739 AGCCGTACGGACCACAAAAT 59.964 50.000 37.62 8.34 37.50 1.82
2050 2739 2.459060 CCATCAAGGCATTTGCACAA 57.541 45.000 4.74 0.00 44.36 3.33
2173 2862 3.557228 ATCTGGTGCCTTCATCTCTTC 57.443 47.619 0.00 0.00 0.00 2.87
2174 2863 3.390639 CCTATCTGGTGCCTTCATCTCTT 59.609 47.826 0.00 0.00 0.00 2.85
2206 2895 2.268920 GCTCATGTTCCTGCCGGA 59.731 61.111 5.05 0.00 37.60 5.14
2230 2919 0.036952 CACTCCGATGCACACTCCTT 60.037 55.000 0.00 0.00 0.00 3.36
2297 2993 2.611964 ATCTCCTCCGGACCTGCCAT 62.612 60.000 0.00 0.00 35.94 4.40
2332 3031 4.278513 CAACTCCCCCGCCCACAA 62.279 66.667 0.00 0.00 0.00 3.33
2462 3198 6.548321 TGAAAGTGGGTTGGTATAGACAAAT 58.452 36.000 0.00 0.00 0.00 2.32
2654 3588 8.924511 AACTTATCTTTTTCTTCCACATCAGA 57.075 30.769 0.00 0.00 0.00 3.27
2724 3679 5.106673 GGTATTGTTTTCTGTACTCAGTGCC 60.107 44.000 0.00 0.00 41.91 5.01
2725 3680 5.468746 TGGTATTGTTTTCTGTACTCAGTGC 59.531 40.000 0.00 0.00 41.91 4.40
2730 3685 9.836076 GGTTATTTGGTATTGTTTTCTGTACTC 57.164 33.333 0.00 0.00 0.00 2.59
2738 3693 8.141298 CCTTAGGGGTTATTTGGTATTGTTTT 57.859 34.615 0.00 0.00 0.00 2.43
2760 3800 3.261981 AGTCACACTCGAAACAACCTT 57.738 42.857 0.00 0.00 0.00 3.50
2853 6188 7.802251 CCGAAGTTCATAAGAGGTACTTATACG 59.198 40.741 3.32 0.00 46.30 3.06
2981 6316 2.507407 TGTAGACCTTGCCAAATCCC 57.493 50.000 0.00 0.00 0.00 3.85
3057 6425 5.904362 AGACCCTGCTTTGTTTTCATATC 57.096 39.130 0.00 0.00 0.00 1.63
3376 6758 8.713737 TTCTTCTTGAATCATCTGTACATCAG 57.286 34.615 0.00 0.00 44.85 2.90
3405 6792 1.351017 ACCGTGATGTCCAATCCAACT 59.649 47.619 0.00 0.00 0.00 3.16
3778 7196 3.127203 CAGTCACGACCTCAAGTACTAGG 59.873 52.174 9.77 9.77 38.93 3.02
3926 7382 7.040478 CCATGACTGAAACAAGGAAAAGTATCA 60.040 37.037 0.00 0.00 0.00 2.15
3993 7452 7.939039 CCAGTGAACAAGTATCCATGGTATATT 59.061 37.037 12.58 2.81 0.00 1.28
3999 7458 4.220693 TCCAGTGAACAAGTATCCATGG 57.779 45.455 4.97 4.97 0.00 3.66
4066 7528 2.435805 GAGTGGCCTGTCATCTGGATTA 59.564 50.000 3.32 0.00 35.11 1.75
4125 7599 0.694444 AGTGGGGAGTGGAAGTGTGT 60.694 55.000 0.00 0.00 0.00 3.72
4137 7611 3.881926 TAGGCAGGGCAAGTGGGGA 62.882 63.158 0.00 0.00 0.00 4.81
4165 7639 1.338960 TGCTCCATTTCTGCATGTCGA 60.339 47.619 0.00 0.00 0.00 4.20
4277 7778 1.106351 TTTCTTGGAAAGGCGCTGCA 61.106 50.000 7.64 0.00 46.24 4.41
4291 7792 7.928167 GGAGAACAATTGGAAGATGTTTTTCTT 59.072 33.333 10.83 0.00 37.41 2.52
4294 7795 6.215845 CGGAGAACAATTGGAAGATGTTTTT 58.784 36.000 10.83 0.00 37.41 1.94
4295 7796 5.278957 CCGGAGAACAATTGGAAGATGTTTT 60.279 40.000 10.83 0.00 37.41 2.43
4309 7810 1.610624 GCTTGACCATCCGGAGAACAA 60.611 52.381 11.34 12.37 35.59 2.83
4314 7815 0.250234 TGAAGCTTGACCATCCGGAG 59.750 55.000 11.34 0.00 35.59 4.63
4364 7865 9.733219 CAAGGCAACAAAATGAAATACAATTTT 57.267 25.926 0.00 0.00 41.41 1.82
4365 7866 8.901793 ACAAGGCAACAAAATGAAATACAATTT 58.098 25.926 0.00 0.00 41.41 1.82
4366 7867 8.449251 ACAAGGCAACAAAATGAAATACAATT 57.551 26.923 0.00 0.00 41.41 2.32
4510 8012 8.849168 TGTTGTCAGTTTGAAAGTTCATGATAT 58.151 29.630 0.00 0.00 37.00 1.63
4511 8013 8.219546 TGTTGTCAGTTTGAAAGTTCATGATA 57.780 30.769 0.00 0.00 37.00 2.15
4512 8014 7.099266 TGTTGTCAGTTTGAAAGTTCATGAT 57.901 32.000 0.00 0.00 37.00 2.45
4513 8015 6.507958 TGTTGTCAGTTTGAAAGTTCATGA 57.492 33.333 0.00 0.00 37.00 3.07
4514 8016 8.745837 GTTATGTTGTCAGTTTGAAAGTTCATG 58.254 33.333 0.00 0.00 37.00 3.07
4515 8017 8.465999 TGTTATGTTGTCAGTTTGAAAGTTCAT 58.534 29.630 0.00 0.00 37.00 2.57
4516 8018 7.821652 TGTTATGTTGTCAGTTTGAAAGTTCA 58.178 30.769 0.00 0.00 34.92 3.18
4517 8019 8.856490 ATGTTATGTTGTCAGTTTGAAAGTTC 57.144 30.769 0.00 0.00 0.00 3.01
4519 8021 9.950680 CTAATGTTATGTTGTCAGTTTGAAAGT 57.049 29.630 0.00 0.00 0.00 2.66
4524 8026 8.853345 GCATTCTAATGTTATGTTGTCAGTTTG 58.147 33.333 4.71 0.00 38.65 2.93
4525 8027 8.575589 TGCATTCTAATGTTATGTTGTCAGTTT 58.424 29.630 4.71 0.00 38.65 2.66
4526 8028 8.023128 GTGCATTCTAATGTTATGTTGTCAGTT 58.977 33.333 4.71 0.00 38.65 3.16
4527 8029 7.174772 TGTGCATTCTAATGTTATGTTGTCAGT 59.825 33.333 4.71 0.00 38.65 3.41
4528 8030 7.529158 TGTGCATTCTAATGTTATGTTGTCAG 58.471 34.615 4.71 0.00 38.65 3.51
4529 8031 7.446001 TGTGCATTCTAATGTTATGTTGTCA 57.554 32.000 4.71 0.00 38.65 3.58
4530 8032 8.915871 AATGTGCATTCTAATGTTATGTTGTC 57.084 30.769 4.71 0.00 38.65 3.18
4531 8033 9.142515 CAAATGTGCATTCTAATGTTATGTTGT 57.857 29.630 4.71 0.00 38.65 3.32
4532 8034 9.142515 ACAAATGTGCATTCTAATGTTATGTTG 57.857 29.630 4.71 6.73 38.65 3.33
4533 8035 9.142515 CACAAATGTGCATTCTAATGTTATGTT 57.857 29.630 0.00 0.00 39.39 2.71
4534 8036 8.692110 CACAAATGTGCATTCTAATGTTATGT 57.308 30.769 0.00 0.00 39.39 2.29
4574 8076 3.547054 TGAACAAGTACGTGGGTTTCT 57.453 42.857 13.47 0.00 0.00 2.52
4606 8108 1.080434 GACGAGCAGACCTGTCACC 60.080 63.158 0.00 0.00 0.00 4.02
4683 8185 3.766691 CCCCAGTGCAGCAATGGC 61.767 66.667 32.46 4.38 46.62 4.40
4688 8190 1.228245 GAACTTCCCCAGTGCAGCA 60.228 57.895 0.00 0.00 35.12 4.41
4694 8196 3.308473 GCTCCTTTATGAACTTCCCCAGT 60.308 47.826 0.00 0.00 37.30 4.00
4697 8199 3.366052 TGCTCCTTTATGAACTTCCCC 57.634 47.619 0.00 0.00 0.00 4.81
4701 8203 4.142600 GCGATGTTGCTCCTTTATGAACTT 60.143 41.667 0.00 0.00 0.00 2.66
4722 8224 5.113975 CCGACATTAATCAATTTCGATTGCG 59.886 40.000 0.00 0.00 43.71 4.85
4733 8235 5.649557 CCTGAAAATGCCGACATTAATCAA 58.350 37.500 11.90 1.04 45.90 2.57
4766 8268 1.141665 TGCTCATGCGCATAGTCGT 59.858 52.632 24.84 0.00 43.34 4.34
4783 8285 0.580578 GCTCATGCGCATAGTCTGTG 59.419 55.000 24.84 13.79 38.45 3.66
4784 8286 0.176449 TGCTCATGCGCATAGTCTGT 59.824 50.000 24.84 0.00 43.34 3.41
4785 8287 2.981997 TGCTCATGCGCATAGTCTG 58.018 52.632 24.84 12.53 43.34 3.51
4794 8296 1.973281 AACCCCTTGTGCTCATGCG 60.973 57.895 0.00 0.00 43.34 4.73
4795 8297 1.181098 ACAACCCCTTGTGCTCATGC 61.181 55.000 0.00 0.00 39.28 4.06
4796 8298 3.040965 ACAACCCCTTGTGCTCATG 57.959 52.632 0.00 0.00 39.28 3.07
4824 8326 6.494893 TGTACAATAAACATCAGTGAAGGC 57.505 37.500 0.00 0.00 0.00 4.35
4905 8407 5.006896 AGTATGTATTATGGGACGGAGGA 57.993 43.478 0.00 0.00 0.00 3.71
4906 8408 5.713389 TGTAGTATGTATTATGGGACGGAGG 59.287 44.000 0.00 0.00 0.00 4.30
4907 8409 6.829229 TGTAGTATGTATTATGGGACGGAG 57.171 41.667 0.00 0.00 0.00 4.63
4908 8410 7.288389 AGTTTGTAGTATGTATTATGGGACGGA 59.712 37.037 0.00 0.00 0.00 4.69
4909 8411 7.439381 AGTTTGTAGTATGTATTATGGGACGG 58.561 38.462 0.00 0.00 0.00 4.79
4910 8412 9.970395 TTAGTTTGTAGTATGTATTATGGGACG 57.030 33.333 0.00 0.00 0.00 4.79
4960 8462 5.067283 AGGATTAAATAAAATTGCCGCTCGT 59.933 36.000 0.00 0.00 0.00 4.18
4965 8467 5.519722 AGCGAGGATTAAATAAAATTGCCG 58.480 37.500 0.00 0.00 0.00 5.69
5087 8589 2.129607 GCTTAAACAACTCGGTCGTCA 58.870 47.619 0.00 0.00 0.00 4.35
5088 8590 2.401351 AGCTTAAACAACTCGGTCGTC 58.599 47.619 0.00 0.00 0.00 4.20
5094 8596 8.840867 GTTCATTGATTTAGCTTAAACAACTCG 58.159 33.333 9.87 3.56 0.00 4.18
5116 8618 5.350365 GTGCTATTTCGTCCATAGTTGTTCA 59.650 40.000 0.00 0.00 0.00 3.18
5225 8727 0.452184 GCGAAGAGACGACATGGAGA 59.548 55.000 0.00 0.00 35.09 3.71
5226 8728 0.526524 GGCGAAGAGACGACATGGAG 60.527 60.000 0.00 0.00 41.34 3.86
5227 8729 1.511305 GGCGAAGAGACGACATGGA 59.489 57.895 0.00 0.00 41.34 3.41
5229 8731 1.519455 GGGGCGAAGAGACGACATG 60.519 63.158 0.00 0.00 43.73 3.21
5230 8732 1.982395 TGGGGCGAAGAGACGACAT 60.982 57.895 0.00 0.00 43.73 3.06
5231 8733 2.599281 TGGGGCGAAGAGACGACA 60.599 61.111 0.00 0.00 43.73 4.35
5232 8734 2.126031 GTGGGGCGAAGAGACGAC 60.126 66.667 0.00 0.00 40.93 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.