Multiple sequence alignment - TraesCS5D01G358500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G358500 chr5D 100.000 2678 0 0 1 2678 438524699 438522022 0.000000e+00 4946
1 TraesCS5D01G358500 chr5D 80.198 1717 296 28 982 2668 438547401 438545699 0.000000e+00 1247
2 TraesCS5D01G358500 chr5D 78.271 1712 319 41 982 2667 438457310 438455626 0.000000e+00 1051
3 TraesCS5D01G358500 chr5D 87.801 623 49 13 68 669 325041346 325040730 0.000000e+00 704
4 TraesCS5D01G358500 chr5D 82.933 416 54 10 264 667 209546448 209546038 2.530000e-95 359
5 TraesCS5D01G358500 chr5D 91.827 208 13 3 37 241 473410307 473410101 1.210000e-73 287
6 TraesCS5D01G358500 chr5D 86.667 165 15 4 513 671 130313660 130313497 2.740000e-40 176
7 TraesCS5D01G358500 chr5A 93.059 1700 113 4 982 2678 554085331 554083634 0.000000e+00 2481
8 TraesCS5D01G358500 chr5A 79.450 1163 221 15 979 2131 553562142 553560988 0.000000e+00 808
9 TraesCS5D01G358500 chr5A 90.079 252 18 6 7 256 447410321 447410567 1.200000e-83 320
10 TraesCS5D01G358500 chr5A 91.787 207 14 2 45 248 447528076 447528282 4.360000e-73 285
11 TraesCS5D01G358500 chr5A 87.295 244 21 8 7 248 447497424 447497659 1.220000e-68 270
12 TraesCS5D01G358500 chr5B 83.632 1619 251 11 1058 2667 533391876 533390263 0.000000e+00 1509
13 TraesCS5D01G358500 chr5B 80.704 1648 277 23 1052 2670 533385897 533384262 0.000000e+00 1243
14 TraesCS5D01G358500 chr5B 78.661 1673 296 34 1001 2635 533511473 533509824 0.000000e+00 1055
15 TraesCS5D01G358500 chr5B 78.466 1356 266 19 979 2315 533093275 533091927 0.000000e+00 863
16 TraesCS5D01G358500 chrUn 79.450 1163 221 15 979 2131 63332907 63331753 0.000000e+00 808
17 TraesCS5D01G358500 chrUn 85.231 325 39 6 254 572 479141111 479141432 2.570000e-85 326
18 TraesCS5D01G358500 chr3B 84.964 419 42 14 264 667 238074442 238074030 3.210000e-109 405
19 TraesCS5D01G358500 chr1D 83.105 438 58 10 245 667 182538493 182538929 4.180000e-103 385
20 TraesCS5D01G358500 chr1D 81.667 420 56 14 264 667 214483732 214483318 1.990000e-86 329
21 TraesCS5D01G358500 chr7D 81.857 463 68 11 217 667 463552532 463552990 2.520000e-100 375
22 TraesCS5D01G358500 chr7D 86.972 284 27 9 2 277 383494769 383495050 7.200000e-81 311
23 TraesCS5D01G358500 chr7D 89.754 244 17 5 37 277 383501287 383501525 3.350000e-79 305
24 TraesCS5D01G358500 chr7D 92.788 208 11 4 72 277 257000861 257000656 5.600000e-77 298
25 TraesCS5D01G358500 chr6D 83.099 426 56 9 254 667 289714767 289715188 9.050000e-100 374
26 TraesCS5D01G358500 chr6D 82.629 426 58 10 254 667 289708446 289708867 1.960000e-96 363
27 TraesCS5D01G358500 chr2D 92.237 219 13 3 37 252 251446351 251446134 9.310000e-80 307
28 TraesCS5D01G358500 chr2D 86.585 164 13 5 513 669 208986189 208986028 3.540000e-39 172
29 TraesCS5D01G358500 chr4A 91.282 195 16 1 55 248 230916710 230916516 5.680000e-67 265
30 TraesCS5D01G358500 chr4A 80.201 298 46 8 386 674 278323404 278323697 7.510000e-51 211
31 TraesCS5D01G358500 chr2B 74.555 562 125 12 1727 2275 80255796 80255240 2.070000e-56 230
32 TraesCS5D01G358500 chr2B 81.273 267 36 11 415 670 203759298 203759561 1.260000e-48 204
33 TraesCS5D01G358500 chr2B 87.578 161 16 3 511 669 120279248 120279090 1.640000e-42 183
34 TraesCS5D01G358500 chr7B 77.365 296 53 9 385 669 250745684 250745976 2.130000e-36 163
35 TraesCS5D01G358500 chr7B 77.132 258 41 12 429 674 703500698 703500949 1.670000e-27 134
36 TraesCS5D01G358500 chr6B 81.006 179 25 2 499 669 557932607 557932430 1.670000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G358500 chr5D 438522022 438524699 2677 True 4946 4946 100.000 1 2678 1 chr5D.!!$R5 2677
1 TraesCS5D01G358500 chr5D 438545699 438547401 1702 True 1247 1247 80.198 982 2668 1 chr5D.!!$R6 1686
2 TraesCS5D01G358500 chr5D 438455626 438457310 1684 True 1051 1051 78.271 982 2667 1 chr5D.!!$R4 1685
3 TraesCS5D01G358500 chr5D 325040730 325041346 616 True 704 704 87.801 68 669 1 chr5D.!!$R3 601
4 TraesCS5D01G358500 chr5A 554083634 554085331 1697 True 2481 2481 93.059 982 2678 1 chr5A.!!$R2 1696
5 TraesCS5D01G358500 chr5A 553560988 553562142 1154 True 808 808 79.450 979 2131 1 chr5A.!!$R1 1152
6 TraesCS5D01G358500 chr5B 533390263 533391876 1613 True 1509 1509 83.632 1058 2667 1 chr5B.!!$R3 1609
7 TraesCS5D01G358500 chr5B 533384262 533385897 1635 True 1243 1243 80.704 1052 2670 1 chr5B.!!$R2 1618
8 TraesCS5D01G358500 chr5B 533509824 533511473 1649 True 1055 1055 78.661 1001 2635 1 chr5B.!!$R4 1634
9 TraesCS5D01G358500 chr5B 533091927 533093275 1348 True 863 863 78.466 979 2315 1 chr5B.!!$R1 1336
10 TraesCS5D01G358500 chrUn 63331753 63332907 1154 True 808 808 79.450 979 2131 1 chrUn.!!$R1 1152
11 TraesCS5D01G358500 chr2B 80255240 80255796 556 True 230 230 74.555 1727 2275 1 chr2B.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 940 0.027586 GGCGCCACGTCAATAACATC 59.972 55.0 24.8 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2305 2356 0.753867 TACCACCTGTTGCAACTCGA 59.246 50.0 28.61 9.43 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.824515 ACGGGCGAGGGAGGAGAG 62.825 72.222 0.00 0.00 0.00 3.20
21 22 4.144727 GCGAGGGAGGAGAGGGGA 62.145 72.222 0.00 0.00 0.00 4.81
22 23 2.197324 CGAGGGAGGAGAGGGGAG 59.803 72.222 0.00 0.00 0.00 4.30
23 24 2.612251 GAGGGAGGAGAGGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
24 25 3.767044 GAGGGAGGAGAGGGGAGGC 62.767 73.684 0.00 0.00 0.00 4.70
26 27 4.144727 GGAGGAGAGGGGAGGCGA 62.145 72.222 0.00 0.00 0.00 5.54
27 28 2.042843 GAGGAGAGGGGAGGCGAA 60.043 66.667 0.00 0.00 0.00 4.70
28 29 1.686110 GAGGAGAGGGGAGGCGAAA 60.686 63.158 0.00 0.00 0.00 3.46
29 30 1.003573 AGGAGAGGGGAGGCGAAAT 59.996 57.895 0.00 0.00 0.00 2.17
30 31 0.264955 AGGAGAGGGGAGGCGAAATA 59.735 55.000 0.00 0.00 0.00 1.40
31 32 1.132689 AGGAGAGGGGAGGCGAAATAT 60.133 52.381 0.00 0.00 0.00 1.28
32 33 1.276705 GGAGAGGGGAGGCGAAATATC 59.723 57.143 0.00 0.00 0.00 1.63
33 34 2.252714 GAGAGGGGAGGCGAAATATCT 58.747 52.381 0.00 0.00 0.00 1.98
34 35 1.974236 AGAGGGGAGGCGAAATATCTG 59.026 52.381 0.00 0.00 0.00 2.90
35 36 0.398318 AGGGGAGGCGAAATATCTGC 59.602 55.000 0.00 0.00 0.00 4.26
36 37 0.108585 GGGGAGGCGAAATATCTGCA 59.891 55.000 0.00 0.00 0.00 4.41
37 38 1.517242 GGGAGGCGAAATATCTGCAG 58.483 55.000 7.63 7.63 0.00 4.41
38 39 1.517242 GGAGGCGAAATATCTGCAGG 58.483 55.000 15.13 0.00 0.00 4.85
39 40 1.517242 GAGGCGAAATATCTGCAGGG 58.483 55.000 15.13 0.00 0.00 4.45
40 41 0.109342 AGGCGAAATATCTGCAGGGG 59.891 55.000 15.13 0.00 0.00 4.79
41 42 0.890996 GGCGAAATATCTGCAGGGGG 60.891 60.000 15.13 0.00 0.00 5.40
42 43 0.108585 GCGAAATATCTGCAGGGGGA 59.891 55.000 15.13 0.00 0.00 4.81
43 44 1.476833 GCGAAATATCTGCAGGGGGAA 60.477 52.381 15.13 0.00 0.00 3.97
44 45 2.498167 CGAAATATCTGCAGGGGGAAG 58.502 52.381 15.13 0.00 0.00 3.46
45 46 2.811873 CGAAATATCTGCAGGGGGAAGG 60.812 54.545 15.13 0.00 0.00 3.46
46 47 1.152649 AATATCTGCAGGGGGAAGGG 58.847 55.000 15.13 0.00 0.00 3.95
47 48 0.271927 ATATCTGCAGGGGGAAGGGA 59.728 55.000 15.13 0.00 0.00 4.20
48 49 0.400525 TATCTGCAGGGGGAAGGGAG 60.401 60.000 15.13 0.00 0.00 4.30
49 50 4.120755 CTGCAGGGGGAAGGGAGC 62.121 72.222 5.57 0.00 0.00 4.70
50 51 4.682714 TGCAGGGGGAAGGGAGCT 62.683 66.667 0.00 0.00 0.00 4.09
51 52 4.120755 GCAGGGGGAAGGGAGCTG 62.121 72.222 0.00 0.00 0.00 4.24
52 53 2.285668 CAGGGGGAAGGGAGCTGA 60.286 66.667 0.00 0.00 0.00 4.26
53 54 2.285743 AGGGGGAAGGGAGCTGAC 60.286 66.667 0.00 0.00 0.00 3.51
54 55 3.787001 GGGGGAAGGGAGCTGACG 61.787 72.222 0.00 0.00 0.00 4.35
55 56 2.683933 GGGGAAGGGAGCTGACGA 60.684 66.667 0.00 0.00 0.00 4.20
56 57 2.726351 GGGGAAGGGAGCTGACGAG 61.726 68.421 0.00 0.00 0.00 4.18
57 58 2.726351 GGGAAGGGAGCTGACGAGG 61.726 68.421 0.00 0.00 0.00 4.63
58 59 2.185608 GAAGGGAGCTGACGAGGC 59.814 66.667 0.00 0.00 0.00 4.70
59 60 3.378399 GAAGGGAGCTGACGAGGCC 62.378 68.421 0.00 0.00 0.00 5.19
62 63 4.500116 GGAGCTGACGAGGCCGAC 62.500 72.222 0.00 0.00 39.50 4.79
63 64 4.838486 GAGCTGACGAGGCCGACG 62.838 72.222 20.26 20.26 39.50 5.12
82 84 1.660917 GCTCGGTCTTATCCCCTCG 59.339 63.158 0.00 0.00 0.00 4.63
83 85 1.807495 GCTCGGTCTTATCCCCTCGG 61.807 65.000 0.00 0.00 0.00 4.63
116 118 3.782443 GTGATCCGGCGGGGTCTT 61.782 66.667 27.98 6.00 44.38 3.01
128 130 2.125106 GGTCTTGCCCCTGTAGCG 60.125 66.667 0.00 0.00 0.00 4.26
129 131 2.656069 GGTCTTGCCCCTGTAGCGA 61.656 63.158 0.00 0.00 0.00 4.93
130 132 1.522569 GTCTTGCCCCTGTAGCGAT 59.477 57.895 0.00 0.00 0.00 4.58
131 133 0.811616 GTCTTGCCCCTGTAGCGATG 60.812 60.000 0.00 0.00 0.00 3.84
132 134 1.524621 CTTGCCCCTGTAGCGATGG 60.525 63.158 0.00 0.00 0.00 3.51
134 136 3.161450 GCCCCTGTAGCGATGGGA 61.161 66.667 8.95 0.00 43.47 4.37
135 137 2.520536 GCCCCTGTAGCGATGGGAT 61.521 63.158 8.95 0.00 43.47 3.85
136 138 1.674057 CCCCTGTAGCGATGGGATC 59.326 63.158 8.95 0.00 43.47 3.36
151 153 1.142748 GATCGGAGGCACAGTGAGG 59.857 63.158 4.15 0.00 0.00 3.86
200 202 2.838225 GCTGGGCCGGCTCTAGTA 60.838 66.667 29.93 5.73 32.24 1.82
203 205 2.918276 GGGCCGGCTCTAGTAGGG 60.918 72.222 28.56 0.00 0.00 3.53
204 206 3.617735 GGCCGGCTCTAGTAGGGC 61.618 72.222 28.56 14.07 43.01 5.19
209 211 1.233369 GGCTCTAGTAGGGCAGGGA 59.767 63.158 23.35 0.00 0.00 4.20
210 212 0.398664 GGCTCTAGTAGGGCAGGGAA 60.399 60.000 23.35 0.00 0.00 3.97
232 243 2.222885 GGGGGCTCTCTCCTTTACC 58.777 63.158 0.00 0.00 0.00 2.85
234 245 1.585895 GGGGCTCTCTCCTTTACCTT 58.414 55.000 0.00 0.00 0.00 3.50
236 247 2.092861 GGGGCTCTCTCCTTTACCTTTC 60.093 54.545 0.00 0.00 0.00 2.62
241 252 5.355630 GGCTCTCTCCTTTACCTTTCATTTC 59.644 44.000 0.00 0.00 0.00 2.17
242 253 5.355630 GCTCTCTCCTTTACCTTTCATTTCC 59.644 44.000 0.00 0.00 0.00 3.13
247 258 7.073208 TCTCCTTTACCTTTCATTTCCCTTTT 58.927 34.615 0.00 0.00 0.00 2.27
248 259 8.228905 TCTCCTTTACCTTTCATTTCCCTTTTA 58.771 33.333 0.00 0.00 0.00 1.52
296 307 6.859420 ATTTTAAAACCACCAGCATTTGAC 57.141 33.333 1.97 0.00 0.00 3.18
346 360 9.577110 CATATCACAATGCAAATTTTAGTCACT 57.423 29.630 0.00 0.00 0.00 3.41
347 361 7.878477 ATCACAATGCAAATTTTAGTCACTG 57.122 32.000 0.00 0.00 0.00 3.66
389 403 7.078249 AGCCTCTAAAATGGTTTGGATTTTT 57.922 32.000 0.00 0.00 34.16 1.94
494 508 4.023193 GGTTCACCACCACAATTAGTGAAG 60.023 45.833 4.26 2.81 45.30 3.02
605 625 2.514458 AGGGGGATTTAGCAACAGTG 57.486 50.000 0.00 0.00 0.00 3.66
619 639 6.822667 AGCAACAGTGAAAATGATGACATA 57.177 33.333 0.00 0.00 36.80 2.29
620 640 6.849502 AGCAACAGTGAAAATGATGACATAG 58.150 36.000 0.00 0.00 36.80 2.23
657 677 8.270137 TGGGATTACTGTAGCTTAATTATCCA 57.730 34.615 11.12 0.00 32.56 3.41
660 680 8.376270 GGATTACTGTAGCTTAATTATCCAGGT 58.624 37.037 0.00 0.00 31.54 4.00
663 683 6.583562 ACTGTAGCTTAATTATCCAGGTGTC 58.416 40.000 0.00 0.00 0.00 3.67
669 689 5.506317 GCTTAATTATCCAGGTGTCACATGC 60.506 44.000 12.13 0.00 0.00 4.06
670 690 3.650281 ATTATCCAGGTGTCACATGCA 57.350 42.857 12.13 0.00 0.00 3.96
671 691 2.696989 TATCCAGGTGTCACATGCAG 57.303 50.000 12.13 0.02 0.00 4.41
672 692 0.694771 ATCCAGGTGTCACATGCAGT 59.305 50.000 12.13 0.00 0.00 4.40
681 701 4.855105 ACATGCAGTGACACACGT 57.145 50.000 8.59 0.00 39.64 4.49
682 702 3.079131 ACATGCAGTGACACACGTT 57.921 47.368 8.59 0.00 39.64 3.99
683 703 0.657312 ACATGCAGTGACACACGTTG 59.343 50.000 8.59 3.00 39.64 4.10
684 704 0.657312 CATGCAGTGACACACGTTGT 59.343 50.000 8.59 3.52 43.10 3.32
685 705 1.063912 CATGCAGTGACACACGTTGTT 59.936 47.619 8.59 0.00 39.17 2.83
686 706 0.445829 TGCAGTGACACACGTTGTTG 59.554 50.000 8.59 0.00 39.17 3.33
687 707 0.861450 GCAGTGACACACGTTGTTGC 60.861 55.000 8.59 3.16 39.17 4.17
688 708 0.586256 CAGTGACACACGTTGTTGCG 60.586 55.000 8.59 0.00 39.17 4.85
689 709 1.297304 GTGACACACGTTGTTGCGG 60.297 57.895 0.00 0.00 39.17 5.69
690 710 2.351888 GACACACGTTGTTGCGGC 60.352 61.111 0.00 0.00 39.17 6.53
691 711 3.102107 GACACACGTTGTTGCGGCA 62.102 57.895 0.00 0.00 39.17 5.69
692 712 2.331098 CACACGTTGTTGCGGCAT 59.669 55.556 2.28 0.00 35.98 4.40
693 713 1.299014 CACACGTTGTTGCGGCATT 60.299 52.632 2.28 0.00 35.98 3.56
694 714 0.040870 CACACGTTGTTGCGGCATTA 60.041 50.000 2.28 0.00 35.98 1.90
695 715 0.663688 ACACGTTGTTGCGGCATTAA 59.336 45.000 2.28 0.00 35.98 1.40
696 716 1.049251 CACGTTGTTGCGGCATTAAC 58.951 50.000 2.28 11.24 35.98 2.01
697 717 0.039888 ACGTTGTTGCGGCATTAACC 60.040 50.000 18.23 6.71 35.98 2.85
698 718 0.731174 CGTTGTTGCGGCATTAACCC 60.731 55.000 18.23 3.35 0.00 4.11
699 719 0.601057 GTTGTTGCGGCATTAACCCT 59.399 50.000 2.28 0.00 0.00 4.34
700 720 1.000394 GTTGTTGCGGCATTAACCCTT 60.000 47.619 2.28 0.00 0.00 3.95
701 721 1.333177 TGTTGCGGCATTAACCCTTT 58.667 45.000 2.28 0.00 0.00 3.11
702 722 1.000283 TGTTGCGGCATTAACCCTTTG 60.000 47.619 2.28 0.00 0.00 2.77
703 723 0.605589 TTGCGGCATTAACCCTTTGG 59.394 50.000 2.28 0.00 37.80 3.28
736 756 1.660167 GGTACGTTATCCCCACAAGC 58.340 55.000 0.00 0.00 0.00 4.01
737 757 1.283736 GTACGTTATCCCCACAAGCG 58.716 55.000 0.00 0.00 0.00 4.68
738 758 0.896923 TACGTTATCCCCACAAGCGT 59.103 50.000 0.00 0.00 35.29 5.07
739 759 0.390735 ACGTTATCCCCACAAGCGTC 60.391 55.000 0.00 0.00 0.00 5.19
740 760 1.087771 CGTTATCCCCACAAGCGTCC 61.088 60.000 0.00 0.00 0.00 4.79
741 761 0.746923 GTTATCCCCACAAGCGTCCC 60.747 60.000 0.00 0.00 0.00 4.46
742 762 2.246761 TTATCCCCACAAGCGTCCCG 62.247 60.000 0.00 0.00 0.00 5.14
744 764 4.760047 CCCCACAAGCGTCCCGAG 62.760 72.222 0.00 0.00 0.00 4.63
745 765 4.760047 CCCACAAGCGTCCCGAGG 62.760 72.222 0.00 0.00 0.00 4.63
746 766 4.003788 CCACAAGCGTCCCGAGGT 62.004 66.667 0.00 0.00 0.00 3.85
747 767 2.432628 CACAAGCGTCCCGAGGTC 60.433 66.667 0.00 0.00 0.00 3.85
748 768 2.600769 ACAAGCGTCCCGAGGTCT 60.601 61.111 0.00 0.00 0.00 3.85
749 769 2.207924 ACAAGCGTCCCGAGGTCTT 61.208 57.895 0.00 0.00 0.00 3.01
750 770 1.446272 CAAGCGTCCCGAGGTCTTC 60.446 63.158 0.00 0.00 0.00 2.87
751 771 2.647158 AAGCGTCCCGAGGTCTTCC 61.647 63.158 0.00 0.00 0.00 3.46
752 772 4.144703 GCGTCCCGAGGTCTTCCC 62.145 72.222 0.00 0.00 0.00 3.97
754 774 2.711922 CGTCCCGAGGTCTTCCCTG 61.712 68.421 0.00 0.00 46.51 4.45
755 775 2.683933 TCCCGAGGTCTTCCCTGC 60.684 66.667 0.00 0.00 46.51 4.85
756 776 2.685380 CCCGAGGTCTTCCCTGCT 60.685 66.667 0.00 0.00 46.51 4.24
757 777 2.581354 CCGAGGTCTTCCCTGCTG 59.419 66.667 0.00 0.00 46.51 4.41
758 778 2.286523 CCGAGGTCTTCCCTGCTGT 61.287 63.158 0.00 0.00 46.51 4.40
759 779 1.216710 CGAGGTCTTCCCTGCTGTC 59.783 63.158 0.00 0.00 46.51 3.51
760 780 1.216710 GAGGTCTTCCCTGCTGTCG 59.783 63.158 0.00 0.00 46.51 4.35
761 781 1.534235 AGGTCTTCCCTGCTGTCGT 60.534 57.895 0.00 0.00 44.08 4.34
762 782 1.079750 GGTCTTCCCTGCTGTCGTC 60.080 63.158 0.00 0.00 0.00 4.20
763 783 1.079750 GTCTTCCCTGCTGTCGTCC 60.080 63.158 0.00 0.00 0.00 4.79
764 784 2.266055 CTTCCCTGCTGTCGTCCC 59.734 66.667 0.00 0.00 0.00 4.46
765 785 2.525629 TTCCCTGCTGTCGTCCCA 60.526 61.111 0.00 0.00 0.00 4.37
766 786 2.111999 CTTCCCTGCTGTCGTCCCAA 62.112 60.000 0.00 0.00 0.00 4.12
767 787 2.358737 CCCTGCTGTCGTCCCAAC 60.359 66.667 0.00 0.00 0.00 3.77
768 788 2.425592 CCTGCTGTCGTCCCAACA 59.574 61.111 0.00 0.00 0.00 3.33
769 789 1.961277 CCTGCTGTCGTCCCAACAC 60.961 63.158 0.00 0.00 0.00 3.32
770 790 2.279851 TGCTGTCGTCCCAACACG 60.280 61.111 0.00 0.00 41.36 4.49
771 791 3.712881 GCTGTCGTCCCAACACGC 61.713 66.667 0.00 0.00 39.74 5.34
772 792 3.403057 CTGTCGTCCCAACACGCG 61.403 66.667 3.53 3.53 39.74 6.01
777 797 2.356553 GTCCCAACACGCGCACTA 60.357 61.111 5.73 0.00 0.00 2.74
778 798 1.740296 GTCCCAACACGCGCACTAT 60.740 57.895 5.73 0.00 0.00 2.12
779 799 1.447140 TCCCAACACGCGCACTATC 60.447 57.895 5.73 0.00 0.00 2.08
780 800 1.739929 CCCAACACGCGCACTATCA 60.740 57.895 5.73 0.00 0.00 2.15
781 801 1.419922 CCAACACGCGCACTATCAC 59.580 57.895 5.73 0.00 0.00 3.06
782 802 1.014044 CCAACACGCGCACTATCACT 61.014 55.000 5.73 0.00 0.00 3.41
783 803 0.366871 CAACACGCGCACTATCACTC 59.633 55.000 5.73 0.00 0.00 3.51
784 804 0.736325 AACACGCGCACTATCACTCC 60.736 55.000 5.73 0.00 0.00 3.85
785 805 2.102357 ACGCGCACTATCACTCCG 59.898 61.111 5.73 0.00 0.00 4.63
786 806 2.102357 CGCGCACTATCACTCCGT 59.898 61.111 8.75 0.00 0.00 4.69
787 807 1.516386 CGCGCACTATCACTCCGTT 60.516 57.895 8.75 0.00 0.00 4.44
788 808 1.742900 CGCGCACTATCACTCCGTTG 61.743 60.000 8.75 0.00 0.00 4.10
789 809 1.421410 GCGCACTATCACTCCGTTGG 61.421 60.000 0.30 0.00 0.00 3.77
790 810 0.806102 CGCACTATCACTCCGTTGGG 60.806 60.000 0.00 0.00 0.00 4.12
791 811 0.249398 GCACTATCACTCCGTTGGGT 59.751 55.000 0.00 0.00 33.83 4.51
792 812 1.739371 GCACTATCACTCCGTTGGGTC 60.739 57.143 0.00 0.00 33.83 4.46
793 813 0.815734 ACTATCACTCCGTTGGGTCG 59.184 55.000 0.00 0.00 33.83 4.79
794 814 0.815734 CTATCACTCCGTTGGGTCGT 59.184 55.000 0.00 0.00 33.83 4.34
795 815 2.019249 CTATCACTCCGTTGGGTCGTA 58.981 52.381 0.00 0.00 33.83 3.43
796 816 0.815734 ATCACTCCGTTGGGTCGTAG 59.184 55.000 0.00 0.00 33.83 3.51
797 817 0.538057 TCACTCCGTTGGGTCGTAGT 60.538 55.000 0.00 0.00 30.66 2.73
798 818 0.388134 CACTCCGTTGGGTCGTAGTG 60.388 60.000 0.00 0.00 40.18 2.74
799 819 1.445582 CTCCGTTGGGTCGTAGTGC 60.446 63.158 0.00 0.00 33.83 4.40
800 820 2.433664 CCGTTGGGTCGTAGTGCC 60.434 66.667 0.00 0.00 0.00 5.01
801 821 2.654877 CGTTGGGTCGTAGTGCCT 59.345 61.111 0.00 0.00 0.00 4.75
802 822 1.445582 CGTTGGGTCGTAGTGCCTC 60.446 63.158 0.00 0.00 0.00 4.70
803 823 1.669440 GTTGGGTCGTAGTGCCTCA 59.331 57.895 0.00 0.00 0.00 3.86
804 824 0.249398 GTTGGGTCGTAGTGCCTCAT 59.751 55.000 0.00 0.00 0.00 2.90
805 825 0.535335 TTGGGTCGTAGTGCCTCATC 59.465 55.000 0.00 0.00 0.00 2.92
806 826 0.613572 TGGGTCGTAGTGCCTCATCA 60.614 55.000 0.00 0.00 0.00 3.07
807 827 0.535335 GGGTCGTAGTGCCTCATCAA 59.465 55.000 0.00 0.00 0.00 2.57
808 828 1.641577 GGTCGTAGTGCCTCATCAAC 58.358 55.000 0.00 0.00 0.00 3.18
809 829 1.641577 GTCGTAGTGCCTCATCAACC 58.358 55.000 0.00 0.00 0.00 3.77
810 830 1.204941 GTCGTAGTGCCTCATCAACCT 59.795 52.381 0.00 0.00 0.00 3.50
811 831 1.899814 TCGTAGTGCCTCATCAACCTT 59.100 47.619 0.00 0.00 0.00 3.50
812 832 2.002586 CGTAGTGCCTCATCAACCTTG 58.997 52.381 0.00 0.00 0.00 3.61
813 833 2.353704 CGTAGTGCCTCATCAACCTTGA 60.354 50.000 0.00 0.00 42.14 3.02
814 834 2.191128 AGTGCCTCATCAACCTTGAC 57.809 50.000 0.00 0.00 40.49 3.18
815 835 1.701847 AGTGCCTCATCAACCTTGACT 59.298 47.619 0.00 0.00 40.49 3.41
816 836 2.107204 AGTGCCTCATCAACCTTGACTT 59.893 45.455 0.00 0.00 40.49 3.01
817 837 2.485814 GTGCCTCATCAACCTTGACTTC 59.514 50.000 0.00 0.00 40.49 3.01
818 838 2.373169 TGCCTCATCAACCTTGACTTCT 59.627 45.455 0.00 0.00 40.49 2.85
819 839 3.181440 TGCCTCATCAACCTTGACTTCTT 60.181 43.478 0.00 0.00 40.49 2.52
820 840 4.041567 TGCCTCATCAACCTTGACTTCTTA 59.958 41.667 0.00 0.00 40.49 2.10
821 841 4.393371 GCCTCATCAACCTTGACTTCTTAC 59.607 45.833 0.00 0.00 40.49 2.34
822 842 4.938226 CCTCATCAACCTTGACTTCTTACC 59.062 45.833 0.00 0.00 40.49 2.85
823 843 5.513094 CCTCATCAACCTTGACTTCTTACCA 60.513 44.000 0.00 0.00 40.49 3.25
824 844 6.126863 TCATCAACCTTGACTTCTTACCAT 57.873 37.500 0.00 0.00 40.49 3.55
825 845 6.173339 TCATCAACCTTGACTTCTTACCATC 58.827 40.000 0.00 0.00 40.49 3.51
826 846 5.825593 TCAACCTTGACTTCTTACCATCT 57.174 39.130 0.00 0.00 31.01 2.90
827 847 6.928348 TCAACCTTGACTTCTTACCATCTA 57.072 37.500 0.00 0.00 31.01 1.98
828 848 6.698380 TCAACCTTGACTTCTTACCATCTAC 58.302 40.000 0.00 0.00 31.01 2.59
829 849 5.326200 ACCTTGACTTCTTACCATCTACG 57.674 43.478 0.00 0.00 0.00 3.51
830 850 4.113354 CCTTGACTTCTTACCATCTACGC 58.887 47.826 0.00 0.00 0.00 4.42
831 851 4.381612 CCTTGACTTCTTACCATCTACGCA 60.382 45.833 0.00 0.00 0.00 5.24
832 852 5.339008 TTGACTTCTTACCATCTACGCAT 57.661 39.130 0.00 0.00 0.00 4.73
833 853 4.682787 TGACTTCTTACCATCTACGCATG 58.317 43.478 0.00 0.00 0.00 4.06
834 854 3.458189 ACTTCTTACCATCTACGCATGC 58.542 45.455 7.91 7.91 0.00 4.06
835 855 2.526304 TCTTACCATCTACGCATGCC 57.474 50.000 13.15 0.00 0.00 4.40
836 856 1.070134 TCTTACCATCTACGCATGCCC 59.930 52.381 13.15 0.00 0.00 5.36
837 857 0.249699 TTACCATCTACGCATGCCCG 60.250 55.000 13.15 0.85 0.00 6.13
838 858 1.110518 TACCATCTACGCATGCCCGA 61.111 55.000 13.15 6.39 0.00 5.14
839 859 1.004560 CCATCTACGCATGCCCGAT 60.005 57.895 13.15 8.57 0.00 4.18
840 860 1.293963 CCATCTACGCATGCCCGATG 61.294 60.000 22.09 22.09 34.84 3.84
841 861 0.601046 CATCTACGCATGCCCGATGT 60.601 55.000 21.31 13.12 34.14 3.06
842 862 0.106708 ATCTACGCATGCCCGATGTT 59.893 50.000 13.15 0.00 34.14 2.71
843 863 0.809636 TCTACGCATGCCCGATGTTG 60.810 55.000 13.15 4.99 34.14 3.33
844 864 1.078778 TACGCATGCCCGATGTTGT 60.079 52.632 13.15 3.88 34.14 3.32
845 865 0.175989 TACGCATGCCCGATGTTGTA 59.824 50.000 13.15 2.82 34.14 2.41
846 866 0.675208 ACGCATGCCCGATGTTGTAA 60.675 50.000 13.15 0.00 34.14 2.41
847 867 0.248054 CGCATGCCCGATGTTGTAAC 60.248 55.000 13.15 0.00 34.14 2.50
848 868 0.808125 GCATGCCCGATGTTGTAACA 59.192 50.000 6.36 0.00 44.06 2.41
849 869 1.467374 GCATGCCCGATGTTGTAACAC 60.467 52.381 6.36 0.00 42.51 3.32
850 870 1.809547 CATGCCCGATGTTGTAACACA 59.190 47.619 0.00 0.00 42.51 3.72
851 871 1.968704 TGCCCGATGTTGTAACACAA 58.031 45.000 0.00 0.00 42.51 3.33
859 879 1.352404 TTGTAACACAACCGCGTGC 59.648 52.632 4.92 0.00 40.73 5.34
860 880 1.090625 TTGTAACACAACCGCGTGCT 61.091 50.000 4.92 0.00 40.73 4.40
861 881 1.090625 TGTAACACAACCGCGTGCTT 61.091 50.000 4.92 0.00 40.73 3.91
862 882 0.028374 GTAACACAACCGCGTGCTTT 59.972 50.000 4.92 0.00 40.73 3.51
863 883 0.733729 TAACACAACCGCGTGCTTTT 59.266 45.000 4.92 0.00 40.73 2.27
864 884 0.800300 AACACAACCGCGTGCTTTTG 60.800 50.000 4.92 2.79 40.73 2.44
865 885 1.226547 CACAACCGCGTGCTTTTGT 60.227 52.632 4.92 3.45 32.34 2.83
866 886 1.063488 ACAACCGCGTGCTTTTGTC 59.937 52.632 4.92 0.00 0.00 3.18
867 887 1.657181 CAACCGCGTGCTTTTGTCC 60.657 57.895 4.92 0.00 0.00 4.02
868 888 2.115911 AACCGCGTGCTTTTGTCCA 61.116 52.632 4.92 0.00 0.00 4.02
869 889 2.051345 CCGCGTGCTTTTGTCCAC 60.051 61.111 4.92 0.00 0.00 4.02
872 892 4.893241 CGTGCTTTTGTCCACGTC 57.107 55.556 5.13 0.00 46.90 4.34
873 893 2.010670 CGTGCTTTTGTCCACGTCA 58.989 52.632 5.13 0.00 46.90 4.35
874 894 0.586319 CGTGCTTTTGTCCACGTCAT 59.414 50.000 5.13 0.00 46.90 3.06
875 895 1.660052 CGTGCTTTTGTCCACGTCATG 60.660 52.381 5.13 0.00 46.90 3.07
876 896 1.333619 GTGCTTTTGTCCACGTCATGT 59.666 47.619 0.00 0.00 0.00 3.21
877 897 2.020720 TGCTTTTGTCCACGTCATGTT 58.979 42.857 0.00 0.00 0.00 2.71
878 898 2.032799 TGCTTTTGTCCACGTCATGTTC 59.967 45.455 0.00 0.00 0.00 3.18
879 899 2.604614 GCTTTTGTCCACGTCATGTTCC 60.605 50.000 0.00 0.00 0.00 3.62
880 900 2.631160 TTTGTCCACGTCATGTTCCT 57.369 45.000 0.00 0.00 0.00 3.36
881 901 1.877637 TTGTCCACGTCATGTTCCTG 58.122 50.000 0.00 0.00 0.00 3.86
882 902 0.034756 TGTCCACGTCATGTTCCTGG 59.965 55.000 0.00 0.00 0.00 4.45
883 903 0.673644 GTCCACGTCATGTTCCTGGG 60.674 60.000 0.00 0.00 0.00 4.45
884 904 2.040544 CCACGTCATGTTCCTGGGC 61.041 63.158 0.00 0.00 0.00 5.36
885 905 1.003355 CACGTCATGTTCCTGGGCT 60.003 57.895 0.00 0.00 0.00 5.19
886 906 0.606401 CACGTCATGTTCCTGGGCTT 60.606 55.000 0.00 0.00 0.00 4.35
887 907 0.606401 ACGTCATGTTCCTGGGCTTG 60.606 55.000 0.00 0.00 0.00 4.01
888 908 1.308069 CGTCATGTTCCTGGGCTTGG 61.308 60.000 0.00 0.00 0.00 3.61
889 909 1.304381 TCATGTTCCTGGGCTTGGC 60.304 57.895 0.00 0.00 0.00 4.52
890 910 1.607178 CATGTTCCTGGGCTTGGCA 60.607 57.895 0.00 0.00 0.00 4.92
891 911 1.155859 ATGTTCCTGGGCTTGGCAA 59.844 52.632 0.00 0.00 0.00 4.52
892 912 0.471591 ATGTTCCTGGGCTTGGCAAA 60.472 50.000 0.00 0.00 0.00 3.68
893 913 1.367471 GTTCCTGGGCTTGGCAAAC 59.633 57.895 0.00 0.00 0.00 2.93
894 914 2.199652 TTCCTGGGCTTGGCAAACG 61.200 57.895 0.00 0.00 0.00 3.60
895 915 2.912025 CCTGGGCTTGGCAAACGT 60.912 61.111 0.00 0.00 0.00 3.99
896 916 2.336088 CTGGGCTTGGCAAACGTG 59.664 61.111 0.00 0.00 0.00 4.49
897 917 3.211564 CTGGGCTTGGCAAACGTGG 62.212 63.158 0.00 0.00 0.00 4.94
898 918 3.223589 GGGCTTGGCAAACGTGGT 61.224 61.111 0.00 0.00 0.00 4.16
899 919 2.027460 GGCTTGGCAAACGTGGTG 59.973 61.111 0.00 0.00 0.00 4.17
900 920 2.781158 GGCTTGGCAAACGTGGTGT 61.781 57.895 0.00 0.00 0.00 4.16
901 921 1.588667 GCTTGGCAAACGTGGTGTG 60.589 57.895 0.00 0.00 0.00 3.82
902 922 1.065600 CTTGGCAAACGTGGTGTGG 59.934 57.895 0.00 0.00 0.00 4.17
903 923 2.952291 CTTGGCAAACGTGGTGTGGC 62.952 60.000 0.00 5.61 45.06 5.01
904 924 4.622456 GGCAAACGTGGTGTGGCG 62.622 66.667 0.00 0.00 36.64 5.69
906 926 4.622456 CAAACGTGGTGTGGCGCC 62.622 66.667 22.73 22.73 34.12 6.53
914 934 3.353836 GTGTGGCGCCACGTCAAT 61.354 61.111 44.46 0.00 44.86 2.57
915 935 2.030401 GTGTGGCGCCACGTCAATA 61.030 57.895 44.46 29.17 44.86 1.90
916 936 1.301795 TGTGGCGCCACGTCAATAA 60.302 52.632 44.46 28.47 44.86 1.40
917 937 1.133869 GTGGCGCCACGTCAATAAC 59.866 57.895 41.21 17.90 44.86 1.89
918 938 1.301795 TGGCGCCACGTCAATAACA 60.302 52.632 29.03 0.00 38.94 2.41
919 939 0.675208 TGGCGCCACGTCAATAACAT 60.675 50.000 29.03 0.00 38.94 2.71
920 940 0.027586 GGCGCCACGTCAATAACATC 59.972 55.000 24.80 0.00 0.00 3.06
921 941 1.006832 GCGCCACGTCAATAACATCT 58.993 50.000 0.00 0.00 0.00 2.90
922 942 1.396996 GCGCCACGTCAATAACATCTT 59.603 47.619 0.00 0.00 0.00 2.40
923 943 2.536928 GCGCCACGTCAATAACATCTTC 60.537 50.000 0.00 0.00 0.00 2.87
924 944 2.930040 CGCCACGTCAATAACATCTTCT 59.070 45.455 0.00 0.00 0.00 2.85
925 945 3.370978 CGCCACGTCAATAACATCTTCTT 59.629 43.478 0.00 0.00 0.00 2.52
926 946 4.142902 CGCCACGTCAATAACATCTTCTTT 60.143 41.667 0.00 0.00 0.00 2.52
927 947 5.616866 CGCCACGTCAATAACATCTTCTTTT 60.617 40.000 0.00 0.00 0.00 2.27
928 948 5.795441 GCCACGTCAATAACATCTTCTTTTC 59.205 40.000 0.00 0.00 0.00 2.29
929 949 6.015504 CCACGTCAATAACATCTTCTTTTCG 58.984 40.000 0.00 0.00 0.00 3.46
930 950 6.015504 CACGTCAATAACATCTTCTTTTCGG 58.984 40.000 0.00 0.00 0.00 4.30
931 951 5.022021 CGTCAATAACATCTTCTTTTCGGC 58.978 41.667 0.00 0.00 0.00 5.54
932 952 5.022021 GTCAATAACATCTTCTTTTCGGCG 58.978 41.667 0.00 0.00 0.00 6.46
933 953 3.675467 ATAACATCTTCTTTTCGGCGC 57.325 42.857 0.00 0.00 0.00 6.53
934 954 1.234821 AACATCTTCTTTTCGGCGCA 58.765 45.000 10.83 0.00 0.00 6.09
935 955 0.517316 ACATCTTCTTTTCGGCGCAC 59.483 50.000 10.83 0.00 0.00 5.34
936 956 0.179189 CATCTTCTTTTCGGCGCACC 60.179 55.000 10.83 0.00 0.00 5.01
937 957 1.305930 ATCTTCTTTTCGGCGCACCC 61.306 55.000 10.83 0.00 0.00 4.61
938 958 2.978018 CTTCTTTTCGGCGCACCCC 61.978 63.158 10.83 0.00 0.00 4.95
939 959 3.485346 TTCTTTTCGGCGCACCCCT 62.485 57.895 10.83 0.00 0.00 4.79
940 960 3.737172 CTTTTCGGCGCACCCCTG 61.737 66.667 10.83 0.00 0.00 4.45
941 961 4.257654 TTTTCGGCGCACCCCTGA 62.258 61.111 10.83 0.00 0.00 3.86
945 965 4.814294 CGGCGCACCCCTGACTAC 62.814 72.222 10.83 0.00 0.00 2.73
946 966 3.702048 GGCGCACCCCTGACTACA 61.702 66.667 10.83 0.00 0.00 2.74
947 967 2.584608 GCGCACCCCTGACTACAT 59.415 61.111 0.30 0.00 0.00 2.29
948 968 1.815421 GCGCACCCCTGACTACATG 60.815 63.158 0.30 0.00 0.00 3.21
949 969 1.153369 CGCACCCCTGACTACATGG 60.153 63.158 0.00 0.00 0.00 3.66
950 970 1.452108 GCACCCCTGACTACATGGC 60.452 63.158 0.00 0.00 31.84 4.40
951 971 1.153369 CACCCCTGACTACATGGCG 60.153 63.158 0.00 0.00 31.84 5.69
952 972 2.203070 CCCCTGACTACATGGCGC 60.203 66.667 0.00 0.00 31.84 6.53
953 973 2.735772 CCCCTGACTACATGGCGCT 61.736 63.158 7.64 0.00 31.84 5.92
954 974 1.221840 CCCTGACTACATGGCGCTT 59.778 57.895 7.64 0.00 0.00 4.68
955 975 0.811616 CCCTGACTACATGGCGCTTC 60.812 60.000 7.64 0.00 0.00 3.86
956 976 0.811616 CCTGACTACATGGCGCTTCC 60.812 60.000 7.64 0.00 0.00 3.46
957 977 0.176680 CTGACTACATGGCGCTTCCT 59.823 55.000 7.64 0.00 35.26 3.36
958 978 0.613260 TGACTACATGGCGCTTCCTT 59.387 50.000 7.64 0.00 35.26 3.36
959 979 1.009829 GACTACATGGCGCTTCCTTG 58.990 55.000 7.64 1.67 43.57 3.61
960 980 1.026718 ACTACATGGCGCTTCCTTGC 61.027 55.000 7.64 0.00 42.17 4.01
961 981 1.002746 TACATGGCGCTTCCTTGCA 60.003 52.632 7.64 0.00 42.17 4.08
962 982 1.305219 TACATGGCGCTTCCTTGCAC 61.305 55.000 7.64 0.00 42.17 4.57
963 983 3.064324 ATGGCGCTTCCTTGCACC 61.064 61.111 7.64 0.00 35.85 5.01
966 986 3.435186 GCGCTTCCTTGCACCCTC 61.435 66.667 0.00 0.00 0.00 4.30
967 987 3.121030 CGCTTCCTTGCACCCTCG 61.121 66.667 0.00 0.00 0.00 4.63
968 988 2.747855 GCTTCCTTGCACCCTCGG 60.748 66.667 0.00 0.00 0.00 4.63
969 989 2.747855 CTTCCTTGCACCCTCGGC 60.748 66.667 0.00 0.00 0.00 5.54
970 990 3.249189 TTCCTTGCACCCTCGGCT 61.249 61.111 0.00 0.00 0.00 5.52
971 991 3.551496 TTCCTTGCACCCTCGGCTG 62.551 63.158 0.00 0.00 0.00 4.85
974 994 4.349503 TTGCACCCTCGGCTGCAT 62.350 61.111 6.76 0.00 38.64 3.96
975 995 2.874648 CTTGCACCCTCGGCTGCATA 62.875 60.000 6.76 0.00 38.64 3.14
976 996 2.897350 GCACCCTCGGCTGCATAC 60.897 66.667 0.50 0.00 32.73 2.39
977 997 2.203070 CACCCTCGGCTGCATACC 60.203 66.667 0.50 0.00 0.00 2.73
978 998 2.365635 ACCCTCGGCTGCATACCT 60.366 61.111 0.50 0.00 0.00 3.08
979 999 1.075525 ACCCTCGGCTGCATACCTA 60.076 57.895 0.50 0.00 0.00 3.08
980 1000 1.367840 CCCTCGGCTGCATACCTAC 59.632 63.158 0.50 0.00 0.00 3.18
1014 1034 1.532868 CGATCAATGGATTCGAAGGCC 59.467 52.381 3.35 8.43 32.67 5.19
1034 1054 0.894141 CTCCTCTGCTGCACTGTAGT 59.106 55.000 0.00 0.00 0.00 2.73
1074 1094 0.732880 CGTTGAGTGCTTCCGACGAT 60.733 55.000 0.00 0.00 36.84 3.73
1087 1107 1.721664 CGACGATCGGCTTGTCCCTA 61.722 60.000 20.64 0.00 35.13 3.53
1106 1126 4.069232 CAAGCCGCTGTCTCCCGA 62.069 66.667 0.00 0.00 0.00 5.14
1171 1191 0.405585 CAACCCCTCCAACTCCACAT 59.594 55.000 0.00 0.00 0.00 3.21
1271 1291 3.384467 CCAATCACCAACAACACTTCCTT 59.616 43.478 0.00 0.00 0.00 3.36
1279 1299 0.030638 CAACACTTCCTTTGCACCGG 59.969 55.000 0.00 0.00 0.00 5.28
1298 1318 0.108585 GTGCTCTCCCTCACCAACAA 59.891 55.000 0.00 0.00 0.00 2.83
1304 1324 0.764890 TCCCTCACCAACAACTCCAG 59.235 55.000 0.00 0.00 0.00 3.86
1339 1359 3.367703 CGAAGGTAATAGTGGTGGTCGTT 60.368 47.826 0.00 0.00 0.00 3.85
1356 1376 1.196808 CGTTTCCTTTGGATGACACCG 59.803 52.381 0.00 0.00 0.00 4.94
1387 1410 0.182061 TATCGTGGGCTCGTCTACCT 59.818 55.000 3.18 0.00 0.00 3.08
1408 1431 3.777925 CGGCGGTGCTTCTGAACG 61.778 66.667 0.00 0.00 0.00 3.95
1467 1490 0.588252 CGTGGCAGAGTTTTGACCAG 59.412 55.000 0.00 0.00 0.00 4.00
1553 1576 1.802337 CGTCTGGTGTCGTGGAAGGA 61.802 60.000 0.00 0.00 0.00 3.36
1603 1630 2.445905 TCCTATGGTATCGACCCAGACT 59.554 50.000 11.01 0.00 46.32 3.24
1764 1795 2.082437 CGTCGACAATGGCGATGAGC 62.082 60.000 25.07 5.77 45.05 4.26
1773 1804 4.197522 GCGATGAGCTCTACGTCG 57.802 61.111 24.75 22.17 45.63 5.12
1809 1844 4.329545 GTGCCCCGCTCACAAGGA 62.330 66.667 0.00 0.00 34.73 3.36
1820 1855 1.002888 CTCACAAGGATGGTGCTGACT 59.997 52.381 0.00 0.00 0.00 3.41
2017 2052 0.398318 AACAAGGAGGAGTGGACTGC 59.602 55.000 0.00 0.00 34.24 4.40
2305 2356 3.034635 AGGTGGCGAGACAATCTATCTT 58.965 45.455 0.00 0.00 0.00 2.40
2358 2433 1.722011 TGCACGCCTTTTACTCTAGC 58.278 50.000 0.00 0.00 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.144727 TCCCCTCTCCTCCCTCGC 62.145 72.222 0.00 0.00 0.00 5.03
5 6 2.197324 CTCCCCTCTCCTCCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
7 8 3.773154 GCCTCCCCTCTCCTCCCT 61.773 72.222 0.00 0.00 0.00 4.20
9 10 3.680920 TTCGCCTCCCCTCTCCTCC 62.681 68.421 0.00 0.00 0.00 4.30
10 11 1.051556 ATTTCGCCTCCCCTCTCCTC 61.052 60.000 0.00 0.00 0.00 3.71
11 12 0.264955 TATTTCGCCTCCCCTCTCCT 59.735 55.000 0.00 0.00 0.00 3.69
12 13 1.276705 GATATTTCGCCTCCCCTCTCC 59.723 57.143 0.00 0.00 0.00 3.71
13 14 2.028567 CAGATATTTCGCCTCCCCTCTC 60.029 54.545 0.00 0.00 0.00 3.20
14 15 1.974236 CAGATATTTCGCCTCCCCTCT 59.026 52.381 0.00 0.00 0.00 3.69
15 16 1.609320 GCAGATATTTCGCCTCCCCTC 60.609 57.143 0.00 0.00 0.00 4.30
16 17 0.398318 GCAGATATTTCGCCTCCCCT 59.602 55.000 0.00 0.00 0.00 4.79
17 18 0.108585 TGCAGATATTTCGCCTCCCC 59.891 55.000 0.00 0.00 0.00 4.81
18 19 1.517242 CTGCAGATATTTCGCCTCCC 58.483 55.000 8.42 0.00 0.00 4.30
19 20 1.517242 CCTGCAGATATTTCGCCTCC 58.483 55.000 17.39 0.00 0.00 4.30
20 21 1.517242 CCCTGCAGATATTTCGCCTC 58.483 55.000 17.39 0.00 0.00 4.70
21 22 0.109342 CCCCTGCAGATATTTCGCCT 59.891 55.000 17.39 0.00 0.00 5.52
22 23 0.890996 CCCCCTGCAGATATTTCGCC 60.891 60.000 17.39 0.00 0.00 5.54
23 24 0.108585 TCCCCCTGCAGATATTTCGC 59.891 55.000 17.39 0.00 0.00 4.70
24 25 2.498167 CTTCCCCCTGCAGATATTTCG 58.502 52.381 17.39 0.00 0.00 3.46
25 26 2.489802 CCCTTCCCCCTGCAGATATTTC 60.490 54.545 17.39 0.00 0.00 2.17
26 27 1.500736 CCCTTCCCCCTGCAGATATTT 59.499 52.381 17.39 0.00 0.00 1.40
27 28 1.152649 CCCTTCCCCCTGCAGATATT 58.847 55.000 17.39 0.00 0.00 1.28
28 29 0.271927 TCCCTTCCCCCTGCAGATAT 59.728 55.000 17.39 0.00 0.00 1.63
29 30 0.400525 CTCCCTTCCCCCTGCAGATA 60.401 60.000 17.39 0.00 0.00 1.98
30 31 1.695597 CTCCCTTCCCCCTGCAGAT 60.696 63.158 17.39 0.00 0.00 2.90
31 32 2.285668 CTCCCTTCCCCCTGCAGA 60.286 66.667 17.39 0.00 0.00 4.26
32 33 4.120755 GCTCCCTTCCCCCTGCAG 62.121 72.222 6.78 6.78 0.00 4.41
33 34 4.682714 AGCTCCCTTCCCCCTGCA 62.683 66.667 0.00 0.00 0.00 4.41
34 35 4.120755 CAGCTCCCTTCCCCCTGC 62.121 72.222 0.00 0.00 0.00 4.85
35 36 2.285668 TCAGCTCCCTTCCCCCTG 60.286 66.667 0.00 0.00 0.00 4.45
36 37 2.285743 GTCAGCTCCCTTCCCCCT 60.286 66.667 0.00 0.00 0.00 4.79
37 38 3.787001 CGTCAGCTCCCTTCCCCC 61.787 72.222 0.00 0.00 0.00 5.40
38 39 2.683933 TCGTCAGCTCCCTTCCCC 60.684 66.667 0.00 0.00 0.00 4.81
39 40 2.726351 CCTCGTCAGCTCCCTTCCC 61.726 68.421 0.00 0.00 0.00 3.97
40 41 2.896443 CCTCGTCAGCTCCCTTCC 59.104 66.667 0.00 0.00 0.00 3.46
41 42 2.185608 GCCTCGTCAGCTCCCTTC 59.814 66.667 0.00 0.00 0.00 3.46
42 43 3.394836 GGCCTCGTCAGCTCCCTT 61.395 66.667 0.00 0.00 0.00 3.95
45 46 4.500116 GTCGGCCTCGTCAGCTCC 62.500 72.222 0.00 0.00 37.69 4.70
46 47 4.838486 CGTCGGCCTCGTCAGCTC 62.838 72.222 0.00 0.00 37.69 4.09
59 60 1.008767 GGATAAGACCGAGCCGTCG 60.009 63.158 0.00 0.00 46.39 5.12
60 61 1.363080 GGGATAAGACCGAGCCGTC 59.637 63.158 0.00 0.00 0.00 4.79
61 62 2.132352 GGGGATAAGACCGAGCCGT 61.132 63.158 0.00 0.00 0.00 5.68
62 63 1.807495 GAGGGGATAAGACCGAGCCG 61.807 65.000 0.00 0.00 0.00 5.52
63 64 1.807495 CGAGGGGATAAGACCGAGCC 61.807 65.000 0.00 0.00 0.00 4.70
64 65 1.660917 CGAGGGGATAAGACCGAGC 59.339 63.158 0.00 0.00 0.00 5.03
65 66 2.342478 CCGAGGGGATAAGACCGAG 58.658 63.158 0.00 0.00 34.06 4.63
66 67 4.593033 CCGAGGGGATAAGACCGA 57.407 61.111 0.00 0.00 34.06 4.69
100 102 3.781307 CAAGACCCCGCCGGATCA 61.781 66.667 5.05 0.00 34.64 2.92
112 114 0.811616 CATCGCTACAGGGGCAAGAC 60.812 60.000 0.00 0.00 0.00 3.01
113 115 1.522092 CATCGCTACAGGGGCAAGA 59.478 57.895 0.00 0.00 0.00 3.02
115 117 2.589540 CCATCGCTACAGGGGCAA 59.410 61.111 0.00 0.00 0.00 4.52
116 118 3.479203 CCCATCGCTACAGGGGCA 61.479 66.667 0.00 0.00 38.98 5.36
128 130 1.070445 CTGTGCCTCCGATCCCATC 59.930 63.158 0.00 0.00 0.00 3.51
129 131 1.690633 ACTGTGCCTCCGATCCCAT 60.691 57.895 0.00 0.00 0.00 4.00
130 132 2.284625 ACTGTGCCTCCGATCCCA 60.285 61.111 0.00 0.00 0.00 4.37
131 133 2.187946 CACTGTGCCTCCGATCCC 59.812 66.667 0.00 0.00 0.00 3.85
132 134 1.142748 CTCACTGTGCCTCCGATCC 59.857 63.158 2.12 0.00 0.00 3.36
134 136 2.362369 CCCTCACTGTGCCTCCGAT 61.362 63.158 2.12 0.00 0.00 4.18
135 137 2.997315 CCCTCACTGTGCCTCCGA 60.997 66.667 2.12 0.00 0.00 4.55
136 138 4.087892 CCCCTCACTGTGCCTCCG 62.088 72.222 2.12 0.00 0.00 4.63
138 140 2.664081 CCTCCCCTCACTGTGCCTC 61.664 68.421 2.12 0.00 0.00 4.70
139 141 2.608988 CCTCCCCTCACTGTGCCT 60.609 66.667 2.12 0.00 0.00 4.75
140 142 3.721706 CCCTCCCCTCACTGTGCC 61.722 72.222 2.12 0.00 0.00 5.01
141 143 3.721706 CCCCTCCCCTCACTGTGC 61.722 72.222 2.12 0.00 0.00 4.57
142 144 1.307343 ATCCCCTCCCCTCACTGTG 60.307 63.158 0.17 0.17 0.00 3.66
143 145 1.003573 GATCCCCTCCCCTCACTGT 59.996 63.158 0.00 0.00 0.00 3.55
183 185 2.838225 TACTAGAGCCGGCCCAGC 60.838 66.667 26.15 10.70 0.00 4.85
190 192 2.203771 CCCTGCCCTACTAGAGCCG 61.204 68.421 0.00 0.00 0.00 5.52
220 231 5.551977 AGGGAAATGAAAGGTAAAGGAGAGA 59.448 40.000 0.00 0.00 0.00 3.10
221 232 5.821097 AGGGAAATGAAAGGTAAAGGAGAG 58.179 41.667 0.00 0.00 0.00 3.20
223 234 6.918067 AAAGGGAAATGAAAGGTAAAGGAG 57.082 37.500 0.00 0.00 0.00 3.69
224 235 8.966155 ATAAAAGGGAAATGAAAGGTAAAGGA 57.034 30.769 0.00 0.00 0.00 3.36
271 282 8.374743 AGTCAAATGCTGGTGGTTTTAAAATAT 58.625 29.630 3.52 0.00 0.00 1.28
310 321 4.520111 TGCATTGTGATATGGCCAAGTATC 59.480 41.667 10.96 14.59 0.00 2.24
312 323 3.895998 TGCATTGTGATATGGCCAAGTA 58.104 40.909 10.96 0.00 0.00 2.24
315 326 4.757019 ATTTGCATTGTGATATGGCCAA 57.243 36.364 10.96 0.00 0.00 4.52
346 360 3.132646 GGCTCACCAAATCATTAATGGCA 59.867 43.478 15.36 0.00 37.77 4.92
347 361 3.385755 AGGCTCACCAAATCATTAATGGC 59.614 43.478 15.36 7.21 37.77 4.40
550 564 7.717568 TCGGTTCAAATTCAAATTAAAGTCCA 58.282 30.769 0.00 0.00 0.00 4.02
605 625 8.408601 AGTTAATGGTGCTATGTCATCATTTTC 58.591 33.333 11.21 6.81 43.17 2.29
619 639 4.949856 CAGTAATCCCAAGTTAATGGTGCT 59.050 41.667 0.00 0.00 38.91 4.40
620 640 4.705023 ACAGTAATCCCAAGTTAATGGTGC 59.295 41.667 0.00 0.00 38.91 5.01
653 673 0.694771 ACTGCATGTGACACCTGGAT 59.305 50.000 12.09 0.00 0.00 3.41
669 689 0.586256 CGCAACAACGTGTGTCACTG 60.586 55.000 4.27 0.00 40.60 3.66
670 690 1.701545 CCGCAACAACGTGTGTCACT 61.702 55.000 4.27 0.00 40.60 3.41
671 691 1.297304 CCGCAACAACGTGTGTCAC 60.297 57.895 0.00 0.00 40.60 3.67
672 692 3.094154 CCGCAACAACGTGTGTCA 58.906 55.556 0.00 0.00 40.60 3.58
673 693 2.351888 GCCGCAACAACGTGTGTC 60.352 61.111 0.00 0.00 40.60 3.67
674 694 1.999071 AATGCCGCAACAACGTGTGT 61.999 50.000 0.00 0.00 44.64 3.72
675 695 0.040870 TAATGCCGCAACAACGTGTG 60.041 50.000 0.00 0.00 0.00 3.82
676 696 0.663688 TTAATGCCGCAACAACGTGT 59.336 45.000 0.00 0.00 0.00 4.49
677 697 1.049251 GTTAATGCCGCAACAACGTG 58.951 50.000 0.00 0.00 0.00 4.49
678 698 0.039888 GGTTAATGCCGCAACAACGT 60.040 50.000 0.00 0.00 0.00 3.99
679 699 0.731174 GGGTTAATGCCGCAACAACG 60.731 55.000 0.00 0.00 0.00 4.10
680 700 0.601057 AGGGTTAATGCCGCAACAAC 59.399 50.000 0.00 4.55 0.00 3.32
681 701 1.333177 AAGGGTTAATGCCGCAACAA 58.667 45.000 0.00 0.00 0.00 2.83
682 702 1.000283 CAAAGGGTTAATGCCGCAACA 60.000 47.619 0.00 0.00 0.00 3.33
683 703 1.671556 CCAAAGGGTTAATGCCGCAAC 60.672 52.381 0.00 0.00 0.00 4.17
684 704 0.605589 CCAAAGGGTTAATGCCGCAA 59.394 50.000 0.00 0.00 0.00 4.85
685 705 1.254284 CCCAAAGGGTTAATGCCGCA 61.254 55.000 0.00 0.00 38.25 5.69
686 706 1.515487 CCCAAAGGGTTAATGCCGC 59.485 57.895 0.00 0.00 38.25 6.53
687 707 1.515487 GCCCAAAGGGTTAATGCCG 59.485 57.895 3.68 0.00 46.51 5.69
688 708 0.907230 TGGCCCAAAGGGTTAATGCC 60.907 55.000 0.00 0.00 46.51 4.40
689 709 1.134431 CATGGCCCAAAGGGTTAATGC 60.134 52.381 0.00 0.00 46.51 3.56
690 710 1.485895 CCATGGCCCAAAGGGTTAATG 59.514 52.381 0.00 5.57 46.51 1.90
691 711 1.878211 CCATGGCCCAAAGGGTTAAT 58.122 50.000 0.00 0.00 46.51 1.40
692 712 0.907230 GCCATGGCCCAAAGGGTTAA 60.907 55.000 27.24 0.00 46.51 2.01
693 713 1.305718 GCCATGGCCCAAAGGGTTA 60.306 57.895 27.24 0.00 46.51 2.85
694 714 2.607442 GCCATGGCCCAAAGGGTT 60.607 61.111 27.24 0.00 46.51 4.11
710 730 3.685317 GATAACGTACCGCGGCGC 61.685 66.667 28.58 24.21 46.52 6.53
711 731 3.026311 GGATAACGTACCGCGGCG 61.026 66.667 28.58 24.34 46.52 6.46
712 732 2.659570 GGGATAACGTACCGCGGC 60.660 66.667 28.58 9.25 46.52 6.53
713 733 2.028043 GGGGATAACGTACCGCGG 59.972 66.667 26.86 26.86 46.52 6.46
715 735 0.108233 TTGTGGGGATAACGTACCGC 60.108 55.000 13.57 13.57 39.15 5.68
716 736 1.930567 CTTGTGGGGATAACGTACCG 58.069 55.000 0.00 0.00 0.00 4.02
717 737 1.660167 GCTTGTGGGGATAACGTACC 58.340 55.000 0.00 0.00 0.00 3.34
718 738 1.283736 CGCTTGTGGGGATAACGTAC 58.716 55.000 0.00 0.00 0.00 3.67
719 739 0.896923 ACGCTTGTGGGGATAACGTA 59.103 50.000 0.00 0.00 0.00 3.57
720 740 0.390735 GACGCTTGTGGGGATAACGT 60.391 55.000 0.00 0.00 34.58 3.99
721 741 1.087771 GGACGCTTGTGGGGATAACG 61.088 60.000 0.00 0.00 0.00 3.18
722 742 0.746923 GGGACGCTTGTGGGGATAAC 60.747 60.000 0.00 0.00 0.00 1.89
723 743 1.605453 GGGACGCTTGTGGGGATAA 59.395 57.895 0.00 0.00 0.00 1.75
724 744 3.316029 GGGACGCTTGTGGGGATA 58.684 61.111 0.00 0.00 0.00 2.59
744 764 1.079750 GACGACAGCAGGGAAGACC 60.080 63.158 0.00 0.00 40.67 3.85
745 765 1.079750 GGACGACAGCAGGGAAGAC 60.080 63.158 0.00 0.00 0.00 3.01
746 766 2.283529 GGGACGACAGCAGGGAAGA 61.284 63.158 0.00 0.00 0.00 2.87
747 767 2.111999 TTGGGACGACAGCAGGGAAG 62.112 60.000 0.00 0.00 0.00 3.46
748 768 2.144078 TTGGGACGACAGCAGGGAA 61.144 57.895 0.00 0.00 0.00 3.97
749 769 2.525629 TTGGGACGACAGCAGGGA 60.526 61.111 0.00 0.00 0.00 4.20
750 770 2.358737 GTTGGGACGACAGCAGGG 60.359 66.667 0.00 0.00 0.00 4.45
751 771 1.961277 GTGTTGGGACGACAGCAGG 60.961 63.158 0.00 0.00 32.14 4.85
752 772 2.310233 CGTGTTGGGACGACAGCAG 61.310 63.158 0.00 0.00 42.10 4.24
753 773 2.279851 CGTGTTGGGACGACAGCA 60.280 61.111 0.00 0.00 42.10 4.41
754 774 3.712881 GCGTGTTGGGACGACAGC 61.713 66.667 0.00 0.00 42.10 4.40
755 775 3.403057 CGCGTGTTGGGACGACAG 61.403 66.667 0.00 0.00 42.10 3.51
760 780 1.693083 GATAGTGCGCGTGTTGGGAC 61.693 60.000 8.43 0.00 0.00 4.46
761 781 1.447140 GATAGTGCGCGTGTTGGGA 60.447 57.895 8.43 0.00 0.00 4.37
762 782 1.739929 TGATAGTGCGCGTGTTGGG 60.740 57.895 8.43 0.00 0.00 4.12
763 783 1.014044 AGTGATAGTGCGCGTGTTGG 61.014 55.000 8.43 0.00 0.00 3.77
764 784 0.366871 GAGTGATAGTGCGCGTGTTG 59.633 55.000 8.43 0.00 0.00 3.33
765 785 0.736325 GGAGTGATAGTGCGCGTGTT 60.736 55.000 8.43 0.00 0.00 3.32
766 786 1.153823 GGAGTGATAGTGCGCGTGT 60.154 57.895 8.43 0.00 0.00 4.49
767 787 2.224217 CGGAGTGATAGTGCGCGTG 61.224 63.158 8.43 0.00 0.00 5.34
768 788 2.102357 CGGAGTGATAGTGCGCGT 59.898 61.111 8.43 0.00 0.00 6.01
769 789 1.516386 AACGGAGTGATAGTGCGCG 60.516 57.895 0.00 0.00 45.00 6.86
770 790 1.421410 CCAACGGAGTGATAGTGCGC 61.421 60.000 0.00 0.00 45.00 6.09
771 791 0.806102 CCCAACGGAGTGATAGTGCG 60.806 60.000 0.00 0.00 45.00 5.34
772 792 0.249398 ACCCAACGGAGTGATAGTGC 59.751 55.000 0.00 0.00 45.00 4.40
773 793 1.469251 CGACCCAACGGAGTGATAGTG 60.469 57.143 0.00 0.00 45.00 2.74
774 794 0.815734 CGACCCAACGGAGTGATAGT 59.184 55.000 0.00 0.00 45.00 2.12
775 795 0.815734 ACGACCCAACGGAGTGATAG 59.184 55.000 0.00 0.00 45.00 2.08
776 796 2.019249 CTACGACCCAACGGAGTGATA 58.981 52.381 0.00 0.00 45.00 2.15
777 797 0.815734 CTACGACCCAACGGAGTGAT 59.184 55.000 0.00 0.00 45.00 3.06
778 798 2.260247 CTACGACCCAACGGAGTGA 58.740 57.895 0.00 0.00 45.00 3.41
779 799 4.883026 CTACGACCCAACGGAGTG 57.117 61.111 0.00 0.00 45.00 3.51
782 802 2.652530 GCACTACGACCCAACGGA 59.347 61.111 0.00 0.00 37.61 4.69
783 803 2.433664 GGCACTACGACCCAACGG 60.434 66.667 0.00 0.00 37.61 4.44
784 804 1.445582 GAGGCACTACGACCCAACG 60.446 63.158 0.00 0.00 41.55 4.10
785 805 0.249398 ATGAGGCACTACGACCCAAC 59.751 55.000 0.00 0.00 41.55 3.77
786 806 0.535335 GATGAGGCACTACGACCCAA 59.465 55.000 0.00 0.00 41.55 4.12
787 807 0.613572 TGATGAGGCACTACGACCCA 60.614 55.000 0.00 0.00 41.55 4.51
788 808 0.535335 TTGATGAGGCACTACGACCC 59.465 55.000 0.00 0.00 41.55 4.46
789 809 1.641577 GTTGATGAGGCACTACGACC 58.358 55.000 0.00 0.00 41.55 4.79
790 810 1.204941 AGGTTGATGAGGCACTACGAC 59.795 52.381 0.00 0.00 41.55 4.34
791 811 1.557099 AGGTTGATGAGGCACTACGA 58.443 50.000 0.00 0.00 41.55 3.43
792 812 2.002586 CAAGGTTGATGAGGCACTACG 58.997 52.381 0.00 0.00 41.55 3.51
793 813 3.003480 GTCAAGGTTGATGAGGCACTAC 58.997 50.000 0.00 0.00 38.18 2.73
794 814 2.906389 AGTCAAGGTTGATGAGGCACTA 59.094 45.455 0.00 0.00 38.18 2.74
795 815 1.701847 AGTCAAGGTTGATGAGGCACT 59.298 47.619 0.00 0.00 40.22 4.40
796 816 2.191128 AGTCAAGGTTGATGAGGCAC 57.809 50.000 0.00 0.00 39.73 5.01
797 817 2.373169 AGAAGTCAAGGTTGATGAGGCA 59.627 45.455 0.00 0.00 39.73 4.75
798 818 3.064900 AGAAGTCAAGGTTGATGAGGC 57.935 47.619 0.00 0.00 39.73 4.70
799 819 4.938226 GGTAAGAAGTCAAGGTTGATGAGG 59.062 45.833 0.00 0.00 39.73 3.86
800 820 5.551233 TGGTAAGAAGTCAAGGTTGATGAG 58.449 41.667 0.00 0.00 39.73 2.90
801 821 5.560722 TGGTAAGAAGTCAAGGTTGATGA 57.439 39.130 0.00 0.00 39.73 2.92
802 822 6.176183 AGATGGTAAGAAGTCAAGGTTGATG 58.824 40.000 0.00 0.00 39.73 3.07
803 823 6.380079 AGATGGTAAGAAGTCAAGGTTGAT 57.620 37.500 0.00 0.00 39.73 2.57
804 824 5.825593 AGATGGTAAGAAGTCAAGGTTGA 57.174 39.130 0.00 0.00 34.20 3.18
805 825 5.577164 CGTAGATGGTAAGAAGTCAAGGTTG 59.423 44.000 0.00 0.00 0.00 3.77
806 826 5.721232 CGTAGATGGTAAGAAGTCAAGGTT 58.279 41.667 0.00 0.00 0.00 3.50
807 827 4.381718 GCGTAGATGGTAAGAAGTCAAGGT 60.382 45.833 0.00 0.00 0.00 3.50
808 828 4.113354 GCGTAGATGGTAAGAAGTCAAGG 58.887 47.826 0.00 0.00 0.00 3.61
809 829 4.744570 TGCGTAGATGGTAAGAAGTCAAG 58.255 43.478 0.00 0.00 0.00 3.02
810 830 4.794278 TGCGTAGATGGTAAGAAGTCAA 57.206 40.909 0.00 0.00 0.00 3.18
811 831 4.682787 CATGCGTAGATGGTAAGAAGTCA 58.317 43.478 0.00 0.00 0.00 3.41
812 832 3.491267 GCATGCGTAGATGGTAAGAAGTC 59.509 47.826 0.00 0.00 0.00 3.01
813 833 3.458189 GCATGCGTAGATGGTAAGAAGT 58.542 45.455 0.00 0.00 0.00 3.01
814 834 2.802816 GGCATGCGTAGATGGTAAGAAG 59.197 50.000 12.44 0.00 0.00 2.85
815 835 2.484770 GGGCATGCGTAGATGGTAAGAA 60.485 50.000 12.44 0.00 0.00 2.52
816 836 1.070134 GGGCATGCGTAGATGGTAAGA 59.930 52.381 12.44 0.00 0.00 2.10
817 837 1.512926 GGGCATGCGTAGATGGTAAG 58.487 55.000 12.44 0.00 0.00 2.34
818 838 0.249699 CGGGCATGCGTAGATGGTAA 60.250 55.000 12.44 0.00 0.00 2.85
819 839 1.110518 TCGGGCATGCGTAGATGGTA 61.111 55.000 12.44 0.00 0.00 3.25
820 840 1.758440 ATCGGGCATGCGTAGATGGT 61.758 55.000 12.44 0.00 0.00 3.55
821 841 1.004560 ATCGGGCATGCGTAGATGG 60.005 57.895 12.44 0.00 0.00 3.51
822 842 0.601046 ACATCGGGCATGCGTAGATG 60.601 55.000 30.07 30.07 42.95 2.90
823 843 0.106708 AACATCGGGCATGCGTAGAT 59.893 50.000 12.44 12.90 35.65 1.98
824 844 0.809636 CAACATCGGGCATGCGTAGA 60.810 55.000 12.44 11.07 35.65 2.59
825 845 1.089481 ACAACATCGGGCATGCGTAG 61.089 55.000 12.44 5.45 35.65 3.51
826 846 0.175989 TACAACATCGGGCATGCGTA 59.824 50.000 12.44 2.60 35.65 4.42
827 847 0.675208 TTACAACATCGGGCATGCGT 60.675 50.000 12.44 3.65 35.65 5.24
828 848 0.248054 GTTACAACATCGGGCATGCG 60.248 55.000 12.44 0.00 35.65 4.73
829 849 0.808125 TGTTACAACATCGGGCATGC 59.192 50.000 9.90 9.90 35.65 4.06
830 850 1.809547 TGTGTTACAACATCGGGCATG 59.190 47.619 0.00 0.00 41.59 4.06
831 851 2.192664 TGTGTTACAACATCGGGCAT 57.807 45.000 0.00 0.00 41.59 4.40
832 852 1.968704 TTGTGTTACAACATCGGGCA 58.031 45.000 0.00 0.00 41.59 5.36
841 861 1.090625 AGCACGCGGTTGTGTTACAA 61.091 50.000 12.47 0.00 41.94 2.41
842 862 1.090625 AAGCACGCGGTTGTGTTACA 61.091 50.000 12.47 0.00 41.94 2.41
843 863 0.028374 AAAGCACGCGGTTGTGTTAC 59.972 50.000 12.47 0.00 41.94 2.50
844 864 0.733729 AAAAGCACGCGGTTGTGTTA 59.266 45.000 12.47 0.00 41.94 2.41
845 865 0.800300 CAAAAGCACGCGGTTGTGTT 60.800 50.000 12.47 0.00 41.94 3.32
846 866 1.226547 CAAAAGCACGCGGTTGTGT 60.227 52.632 12.47 0.00 41.94 3.72
847 867 1.199852 GACAAAAGCACGCGGTTGTG 61.200 55.000 12.47 8.89 42.50 3.33
848 868 1.063488 GACAAAAGCACGCGGTTGT 59.937 52.632 12.47 12.25 36.92 3.32
849 869 1.657181 GGACAAAAGCACGCGGTTG 60.657 57.895 12.47 9.00 31.88 3.77
850 870 2.115911 TGGACAAAAGCACGCGGTT 61.116 52.632 12.47 0.00 0.00 4.44
851 871 2.515057 TGGACAAAAGCACGCGGT 60.515 55.556 12.47 0.00 0.00 5.68
852 872 2.051345 GTGGACAAAAGCACGCGG 60.051 61.111 12.47 0.00 0.00 6.46
853 873 2.425124 CGTGGACAAAAGCACGCG 60.425 61.111 3.53 3.53 34.31 6.01
854 874 1.368850 GACGTGGACAAAAGCACGC 60.369 57.895 0.00 0.00 43.84 5.34
855 875 0.586319 ATGACGTGGACAAAAGCACG 59.414 50.000 0.00 0.00 45.28 5.34
856 876 1.333619 ACATGACGTGGACAAAAGCAC 59.666 47.619 0.00 0.00 0.00 4.40
857 877 1.674359 ACATGACGTGGACAAAAGCA 58.326 45.000 0.00 0.00 0.00 3.91
858 878 2.604614 GGAACATGACGTGGACAAAAGC 60.605 50.000 0.00 0.00 0.00 3.51
859 879 2.878406 AGGAACATGACGTGGACAAAAG 59.122 45.455 0.00 0.00 0.00 2.27
860 880 2.616376 CAGGAACATGACGTGGACAAAA 59.384 45.455 0.00 0.00 0.00 2.44
861 881 2.217750 CAGGAACATGACGTGGACAAA 58.782 47.619 0.00 0.00 0.00 2.83
862 882 1.542328 CCAGGAACATGACGTGGACAA 60.542 52.381 21.87 0.00 43.30 3.18
863 883 0.034756 CCAGGAACATGACGTGGACA 59.965 55.000 21.87 0.00 43.30 4.02
864 884 0.673644 CCCAGGAACATGACGTGGAC 60.674 60.000 25.33 2.48 43.30 4.02
865 885 1.676968 CCCAGGAACATGACGTGGA 59.323 57.895 25.33 0.00 43.30 4.02
866 886 2.040544 GCCCAGGAACATGACGTGG 61.041 63.158 20.50 20.50 41.24 4.94
867 887 0.606401 AAGCCCAGGAACATGACGTG 60.606 55.000 0.00 5.13 0.00 4.49
868 888 0.606401 CAAGCCCAGGAACATGACGT 60.606 55.000 0.00 0.00 0.00 4.34
869 889 1.308069 CCAAGCCCAGGAACATGACG 61.308 60.000 0.00 0.00 0.00 4.35
870 890 1.598701 GCCAAGCCCAGGAACATGAC 61.599 60.000 0.00 0.00 0.00 3.06
871 891 1.304381 GCCAAGCCCAGGAACATGA 60.304 57.895 0.00 0.00 0.00 3.07
872 892 1.186917 TTGCCAAGCCCAGGAACATG 61.187 55.000 0.00 0.00 0.00 3.21
873 893 0.471591 TTTGCCAAGCCCAGGAACAT 60.472 50.000 0.00 0.00 0.00 2.71
874 894 1.075674 TTTGCCAAGCCCAGGAACA 60.076 52.632 0.00 0.00 0.00 3.18
875 895 1.367471 GTTTGCCAAGCCCAGGAAC 59.633 57.895 0.00 0.00 0.00 3.62
876 896 2.199652 CGTTTGCCAAGCCCAGGAA 61.200 57.895 0.00 0.00 0.00 3.36
877 897 2.597217 CGTTTGCCAAGCCCAGGA 60.597 61.111 0.00 0.00 0.00 3.86
878 898 2.912025 ACGTTTGCCAAGCCCAGG 60.912 61.111 0.00 0.00 0.00 4.45
879 899 2.336088 CACGTTTGCCAAGCCCAG 59.664 61.111 0.00 0.00 0.00 4.45
880 900 3.222855 CCACGTTTGCCAAGCCCA 61.223 61.111 0.00 0.00 0.00 5.36
881 901 3.223589 ACCACGTTTGCCAAGCCC 61.224 61.111 0.00 0.00 0.00 5.19
882 902 2.027460 CACCACGTTTGCCAAGCC 59.973 61.111 0.00 0.00 0.00 4.35
883 903 1.588667 CACACCACGTTTGCCAAGC 60.589 57.895 0.00 0.00 0.00 4.01
884 904 1.065600 CCACACCACGTTTGCCAAG 59.934 57.895 0.00 0.00 0.00 3.61
885 905 3.069980 GCCACACCACGTTTGCCAA 62.070 57.895 0.00 0.00 0.00 4.52
886 906 3.522731 GCCACACCACGTTTGCCA 61.523 61.111 0.00 0.00 0.00 4.92
887 907 4.622456 CGCCACACCACGTTTGCC 62.622 66.667 0.00 0.00 0.00 4.52
889 909 4.622456 GGCGCCACACCACGTTTG 62.622 66.667 24.80 0.00 0.00 2.93
899 919 1.133869 GTTATTGACGTGGCGCCAC 59.866 57.895 43.07 43.07 43.01 5.01
900 920 0.675208 ATGTTATTGACGTGGCGCCA 60.675 50.000 29.03 29.03 0.00 5.69
901 921 0.027586 GATGTTATTGACGTGGCGCC 59.972 55.000 22.73 22.73 0.00 6.53
902 922 1.006832 AGATGTTATTGACGTGGCGC 58.993 50.000 0.00 0.00 0.00 6.53
903 923 2.930040 AGAAGATGTTATTGACGTGGCG 59.070 45.455 0.00 0.00 0.00 5.69
904 924 4.946784 AAGAAGATGTTATTGACGTGGC 57.053 40.909 0.00 0.00 0.00 5.01
905 925 6.015504 CGAAAAGAAGATGTTATTGACGTGG 58.984 40.000 0.00 0.00 0.00 4.94
906 926 6.015504 CCGAAAAGAAGATGTTATTGACGTG 58.984 40.000 0.00 0.00 0.00 4.49
907 927 5.390567 GCCGAAAAGAAGATGTTATTGACGT 60.391 40.000 0.00 0.00 0.00 4.34
908 928 5.022021 GCCGAAAAGAAGATGTTATTGACG 58.978 41.667 0.00 3.40 0.00 4.35
909 929 5.022021 CGCCGAAAAGAAGATGTTATTGAC 58.978 41.667 0.00 0.00 0.00 3.18
910 930 4.436852 GCGCCGAAAAGAAGATGTTATTGA 60.437 41.667 0.00 0.00 0.00 2.57
911 931 3.786048 GCGCCGAAAAGAAGATGTTATTG 59.214 43.478 0.00 0.00 0.00 1.90
912 932 3.438781 TGCGCCGAAAAGAAGATGTTATT 59.561 39.130 4.18 0.00 0.00 1.40
913 933 3.006940 TGCGCCGAAAAGAAGATGTTAT 58.993 40.909 4.18 0.00 0.00 1.89
914 934 2.158841 GTGCGCCGAAAAGAAGATGTTA 59.841 45.455 4.18 0.00 0.00 2.41
915 935 1.069227 GTGCGCCGAAAAGAAGATGTT 60.069 47.619 4.18 0.00 0.00 2.71
916 936 0.517316 GTGCGCCGAAAAGAAGATGT 59.483 50.000 4.18 0.00 0.00 3.06
917 937 0.179189 GGTGCGCCGAAAAGAAGATG 60.179 55.000 4.18 0.00 0.00 2.90
918 938 1.305930 GGGTGCGCCGAAAAGAAGAT 61.306 55.000 10.86 0.00 34.97 2.40
919 939 1.964373 GGGTGCGCCGAAAAGAAGA 60.964 57.895 10.86 0.00 34.97 2.87
920 940 2.561373 GGGTGCGCCGAAAAGAAG 59.439 61.111 10.86 0.00 34.97 2.85
921 941 2.981350 GGGGTGCGCCGAAAAGAA 60.981 61.111 10.86 0.00 34.97 2.52
922 942 3.948719 AGGGGTGCGCCGAAAAGA 61.949 61.111 10.86 0.00 34.97 2.52
923 943 3.737172 CAGGGGTGCGCCGAAAAG 61.737 66.667 10.86 0.00 34.97 2.27
924 944 4.257654 TCAGGGGTGCGCCGAAAA 62.258 61.111 10.86 0.00 34.97 2.29
928 948 4.814294 GTAGTCAGGGGTGCGCCG 62.814 72.222 10.86 0.00 34.97 6.46
929 949 3.031417 ATGTAGTCAGGGGTGCGCC 62.031 63.158 8.12 8.12 0.00 6.53
930 950 1.815421 CATGTAGTCAGGGGTGCGC 60.815 63.158 0.00 0.00 0.00 6.09
931 951 1.153369 CCATGTAGTCAGGGGTGCG 60.153 63.158 0.00 0.00 41.24 5.34
932 952 1.452108 GCCATGTAGTCAGGGGTGC 60.452 63.158 1.34 0.00 44.59 5.01
933 953 1.153369 CGCCATGTAGTCAGGGGTG 60.153 63.158 1.34 0.00 44.59 4.61
934 954 3.031417 GCGCCATGTAGTCAGGGGT 62.031 63.158 0.00 0.00 44.59 4.95
935 955 2.203070 GCGCCATGTAGTCAGGGG 60.203 66.667 0.00 0.00 44.59 4.79
936 956 0.811616 GAAGCGCCATGTAGTCAGGG 60.812 60.000 2.29 0.00 46.81 4.45
937 957 0.811616 GGAAGCGCCATGTAGTCAGG 60.812 60.000 2.29 0.00 36.34 3.86
938 958 0.176680 AGGAAGCGCCATGTAGTCAG 59.823 55.000 2.29 0.00 40.02 3.51
939 959 0.613260 AAGGAAGCGCCATGTAGTCA 59.387 50.000 2.29 0.00 40.02 3.41
940 960 1.009829 CAAGGAAGCGCCATGTAGTC 58.990 55.000 2.29 0.00 40.02 2.59
941 961 1.026718 GCAAGGAAGCGCCATGTAGT 61.027 55.000 2.29 0.00 37.67 2.73
942 962 1.026182 TGCAAGGAAGCGCCATGTAG 61.026 55.000 2.29 0.00 37.67 2.74
943 963 1.002746 TGCAAGGAAGCGCCATGTA 60.003 52.632 2.29 0.00 37.67 2.29
944 964 2.282391 TGCAAGGAAGCGCCATGT 60.282 55.556 2.29 0.00 37.67 3.21
945 965 2.180017 GTGCAAGGAAGCGCCATG 59.820 61.111 2.29 0.00 39.04 3.66
949 969 3.435186 GAGGGTGCAAGGAAGCGC 61.435 66.667 0.00 0.00 44.00 5.92
950 970 3.121030 CGAGGGTGCAAGGAAGCG 61.121 66.667 0.00 0.00 37.31 4.68
951 971 2.747855 CCGAGGGTGCAAGGAAGC 60.748 66.667 0.00 0.00 0.00 3.86
952 972 2.747855 GCCGAGGGTGCAAGGAAG 60.748 66.667 0.00 0.00 0.00 3.46
953 973 3.249189 AGCCGAGGGTGCAAGGAA 61.249 61.111 0.00 0.00 0.00 3.36
954 974 4.020617 CAGCCGAGGGTGCAAGGA 62.021 66.667 8.48 0.00 36.81 3.36
960 980 1.399744 TAGGTATGCAGCCGAGGGTG 61.400 60.000 16.27 16.27 45.36 4.61
961 981 1.075525 TAGGTATGCAGCCGAGGGT 60.076 57.895 0.00 0.00 0.00 4.34
962 982 1.367840 GTAGGTATGCAGCCGAGGG 59.632 63.158 0.00 0.00 0.00 4.30
963 983 0.681733 ATGTAGGTATGCAGCCGAGG 59.318 55.000 0.00 0.00 0.00 4.63
964 984 2.533266 AATGTAGGTATGCAGCCGAG 57.467 50.000 0.00 0.00 0.00 4.63
965 985 2.942376 CAAAATGTAGGTATGCAGCCGA 59.058 45.455 0.00 0.00 0.00 5.54
966 986 2.033299 CCAAAATGTAGGTATGCAGCCG 59.967 50.000 0.00 0.00 0.00 5.52
967 987 2.223805 GCCAAAATGTAGGTATGCAGCC 60.224 50.000 0.00 0.00 0.00 4.85
968 988 2.223805 GGCCAAAATGTAGGTATGCAGC 60.224 50.000 0.00 0.00 0.00 5.25
969 989 3.067180 CAGGCCAAAATGTAGGTATGCAG 59.933 47.826 5.01 0.00 0.00 4.41
970 990 3.023119 CAGGCCAAAATGTAGGTATGCA 58.977 45.455 5.01 0.00 0.00 3.96
971 991 3.287222 TCAGGCCAAAATGTAGGTATGC 58.713 45.455 5.01 0.00 0.00 3.14
972 992 4.214119 CGATCAGGCCAAAATGTAGGTATG 59.786 45.833 5.01 0.00 0.00 2.39
973 993 4.102524 TCGATCAGGCCAAAATGTAGGTAT 59.897 41.667 5.01 0.00 0.00 2.73
974 994 3.452990 TCGATCAGGCCAAAATGTAGGTA 59.547 43.478 5.01 0.00 0.00 3.08
975 995 2.238646 TCGATCAGGCCAAAATGTAGGT 59.761 45.455 5.01 0.00 0.00 3.08
976 996 2.917933 TCGATCAGGCCAAAATGTAGG 58.082 47.619 5.01 0.00 0.00 3.18
977 997 4.129380 TGATCGATCAGGCCAAAATGTAG 58.871 43.478 23.99 0.00 32.11 2.74
978 998 4.149511 TGATCGATCAGGCCAAAATGTA 57.850 40.909 23.99 0.00 32.11 2.29
979 999 3.003394 TGATCGATCAGGCCAAAATGT 57.997 42.857 23.99 0.00 32.11 2.71
980 1000 4.295870 CATTGATCGATCAGGCCAAAATG 58.704 43.478 25.95 20.21 38.19 2.32
1014 1034 0.175302 CTACAGTGCAGCAGAGGAGG 59.825 60.000 0.00 0.00 0.00 4.30
1034 1054 3.303725 CGGCAGAAACAAAACGATCAGAA 60.304 43.478 0.00 0.00 0.00 3.02
1074 1094 1.596934 CTTGCTAGGGACAAGCCGA 59.403 57.895 0.00 0.00 38.23 5.54
1106 1126 2.996249 ATCGGAGATGCTGATGTTGT 57.004 45.000 0.00 0.00 45.12 3.32
1235 1255 1.133761 TGATTGGGGTTTCACGGTTGA 60.134 47.619 0.00 0.00 0.00 3.18
1279 1299 0.108585 TTGTTGGTGAGGGAGAGCAC 59.891 55.000 0.00 0.00 0.00 4.40
1298 1318 2.093075 TCGGAGATAACGAGACTGGAGT 60.093 50.000 0.00 0.00 35.12 3.85
1304 1324 4.889832 TTACCTTCGGAGATAACGAGAC 57.110 45.455 0.00 0.00 41.81 3.36
1339 1359 2.500229 GTTCGGTGTCATCCAAAGGAA 58.500 47.619 0.00 0.00 34.34 3.36
1387 1410 2.652382 TTCAGAAGCACCGCCGTTGA 62.652 55.000 0.00 0.00 0.00 3.18
1408 1431 1.807226 GGATAACAAGGTTGCCGGC 59.193 57.895 22.73 22.73 0.00 6.13
1448 1471 0.588252 CTGGTCAAAACTCTGCCACG 59.412 55.000 0.00 0.00 0.00 4.94
1467 1490 1.149148 GGAGGAACGAGTCTGTTTGC 58.851 55.000 0.00 0.00 30.75 3.68
1603 1630 1.209504 CAGGAATACTTGGAAGGCCGA 59.790 52.381 0.00 0.00 36.79 5.54
1764 1795 2.222841 CGAGGCTATATGCGACGTAGAG 60.223 54.545 0.00 0.00 44.05 2.43
1773 1804 1.066573 ACCATCAGCGAGGCTATATGC 60.067 52.381 0.00 0.00 36.40 3.14
1809 1844 3.149196 CACCAAAGTAAGTCAGCACCAT 58.851 45.455 0.00 0.00 0.00 3.55
1820 1855 1.972795 AGGCGGTACTCACCAAAGTAA 59.027 47.619 0.00 0.00 46.14 2.24
1898 1933 3.098555 CCGTAGCGGTTGCATTCC 58.901 61.111 0.00 0.00 46.23 3.01
2173 2209 1.541310 CGTACCCCAGACAGGAGCAA 61.541 60.000 0.00 0.00 41.22 3.91
2305 2356 0.753867 TACCACCTGTTGCAACTCGA 59.246 50.000 28.61 9.43 0.00 4.04
2437 2516 7.715249 TCTCCTTTTATCTGCACCATACATAAC 59.285 37.037 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.