Multiple sequence alignment - TraesCS5D01G357500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G357500 chr5D 100.000 3272 0 0 1 3272 438357396 438354125 0.000000e+00 6043.0
1 TraesCS5D01G357500 chr5A 95.247 3282 131 13 1 3272 553375213 553371947 0.000000e+00 5173.0
2 TraesCS5D01G357500 chr5A 86.547 446 48 9 1511 1947 556697864 556698306 6.350000e-132 481.0
3 TraesCS5D01G357500 chr5A 86.547 446 48 9 1511 1947 556702779 556703221 6.350000e-132 481.0
4 TraesCS5D01G357500 chr5A 89.231 130 8 5 2357 2484 553372924 553372799 1.220000e-34 158.0
5 TraesCS5D01G357500 chr5B 92.722 2432 157 10 1 2420 532865114 532862691 0.000000e+00 3493.0
6 TraesCS5D01G357500 chr5B 93.135 539 26 5 2357 2894 532862819 532862291 0.000000e+00 780.0
7 TraesCS5D01G357500 chr5B 90.979 388 18 5 2892 3272 532862109 532861732 1.050000e-139 507.0
8 TraesCS5D01G357500 chr3D 88.018 676 67 11 2357 3031 134663552 134662890 0.000000e+00 787.0
9 TraesCS5D01G357500 chr3D 78.270 497 59 18 2563 3040 50654897 50655363 1.160000e-69 274.0
10 TraesCS5D01G357500 chr2A 82.812 640 82 19 1942 2557 717808400 717809035 6.170000e-152 547.0
11 TraesCS5D01G357500 chr2A 79.283 753 81 40 1945 2668 181789689 181788983 1.070000e-124 457.0
12 TraesCS5D01G357500 chr2A 88.060 268 31 1 2767 3033 181788929 181788662 1.890000e-82 316.0
13 TraesCS5D01G357500 chr2A 85.333 75 10 1 674 748 4010701 4010774 3.500000e-10 76.8
14 TraesCS5D01G357500 chr7D 83.333 624 67 19 2416 3035 476752465 476753055 2.870000e-150 542.0
15 TraesCS5D01G357500 chr4A 82.555 642 80 18 1942 2557 519799948 519800583 1.340000e-148 536.0
16 TraesCS5D01G357500 chr4A 88.739 444 33 6 1511 1947 519797041 519797474 8.040000e-146 527.0
17 TraesCS5D01G357500 chr4A 88.662 441 34 5 1514 1947 613999901 613999470 1.040000e-144 523.0
18 TraesCS5D01G357500 chr3A 89.116 441 32 5 1514 1947 57513970 57513539 4.810000e-148 534.0
19 TraesCS5D01G357500 chr3A 87.832 452 48 7 2586 3035 628032334 628032780 1.040000e-144 523.0
20 TraesCS5D01G357500 chr3A 79.501 761 79 35 1945 2668 57502570 57501850 1.370000e-128 470.0
21 TraesCS5D01G357500 chr3A 85.909 440 53 5 1514 1947 110461856 110461420 8.270000e-126 460.0
22 TraesCS5D01G357500 chr2B 88.739 444 34 5 1511 1947 527661406 527661840 2.240000e-146 529.0
23 TraesCS5D01G357500 chr2B 80.343 758 87 31 1942 2668 527664299 527665025 4.840000e-143 518.0
24 TraesCS5D01G357500 chr2B 88.060 268 31 1 2767 3033 527665078 527665345 1.890000e-82 316.0
25 TraesCS5D01G357500 chr2B 81.871 342 53 6 2391 2731 415052669 415053002 2.490000e-71 279.0
26 TraesCS5D01G357500 chr7A 81.724 673 85 22 2374 3038 39247953 39247311 8.040000e-146 527.0
27 TraesCS5D01G357500 chr7A 80.640 687 85 18 2357 3032 691475558 691474909 3.790000e-134 488.0
28 TraesCS5D01G357500 chr1B 82.696 601 73 17 1977 2551 112755070 112754475 3.770000e-139 505.0
29 TraesCS5D01G357500 chr1B 86.635 419 50 4 1942 2357 25833914 25834329 2.980000e-125 459.0
30 TraesCS5D01G357500 chr1B 96.970 33 1 0 2407 2439 170584529 170584497 4.560000e-04 56.5
31 TraesCS5D01G357500 chr1A 86.538 416 51 3 1942 2354 19986138 19986551 1.380000e-123 453.0
32 TraesCS5D01G357500 chr1A 89.888 267 26 1 2767 3032 19974143 19974409 3.130000e-90 342.0
33 TraesCS5D01G357500 chr1A 88.764 267 29 1 2767 3032 19986838 19987104 3.150000e-85 326.0
34 TraesCS5D01G357500 chr2D 82.164 342 54 5 2391 2731 349001156 349001491 1.490000e-73 287.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G357500 chr5D 438354125 438357396 3271 True 6043.000000 6043 100.000000 1 3272 1 chr5D.!!$R1 3271
1 TraesCS5D01G357500 chr5A 553371947 553375213 3266 True 2665.500000 5173 92.239000 1 3272 2 chr5A.!!$R1 3271
2 TraesCS5D01G357500 chr5B 532861732 532865114 3382 True 1593.333333 3493 92.278667 1 3272 3 chr5B.!!$R1 3271
3 TraesCS5D01G357500 chr3D 134662890 134663552 662 True 787.000000 787 88.018000 2357 3031 1 chr3D.!!$R1 674
4 TraesCS5D01G357500 chr2A 717808400 717809035 635 False 547.000000 547 82.812000 1942 2557 1 chr2A.!!$F2 615
5 TraesCS5D01G357500 chr2A 181788662 181789689 1027 True 386.500000 457 83.671500 1945 3033 2 chr2A.!!$R1 1088
6 TraesCS5D01G357500 chr7D 476752465 476753055 590 False 542.000000 542 83.333000 2416 3035 1 chr7D.!!$F1 619
7 TraesCS5D01G357500 chr4A 519797041 519800583 3542 False 531.500000 536 85.647000 1511 2557 2 chr4A.!!$F1 1046
8 TraesCS5D01G357500 chr3A 57501850 57502570 720 True 470.000000 470 79.501000 1945 2668 1 chr3A.!!$R1 723
9 TraesCS5D01G357500 chr2B 527661406 527665345 3939 False 454.333333 529 85.714000 1511 3033 3 chr2B.!!$F2 1522
10 TraesCS5D01G357500 chr7A 39247311 39247953 642 True 527.000000 527 81.724000 2374 3038 1 chr7A.!!$R1 664
11 TraesCS5D01G357500 chr7A 691474909 691475558 649 True 488.000000 488 80.640000 2357 3032 1 chr7A.!!$R2 675
12 TraesCS5D01G357500 chr1B 112754475 112755070 595 True 505.000000 505 82.696000 1977 2551 1 chr1B.!!$R1 574
13 TraesCS5D01G357500 chr1A 19986138 19987104 966 False 389.500000 453 87.651000 1942 3032 2 chr1A.!!$F2 1090

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 597 0.182537 TGTTTCCGATGGGGCCATAG 59.817 55.0 4.39 0.0 36.7 2.23 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2326 4841 0.10412 CACGAGTCCAAGTCCACACA 59.896 55.0 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.509318 TGTATATGGCAGGAGTGTAGAATAAGT 59.491 37.037 0.00 0.00 0.00 2.24
156 162 4.393062 CACACATTCCAGAACCTATCACAC 59.607 45.833 0.00 0.00 0.00 3.82
202 208 3.833706 GCATGATACGCCAAAGCTC 57.166 52.632 0.00 0.00 36.60 4.09
490 496 3.330405 TGACTTCCTTCCAATGATGTGGA 59.670 43.478 0.00 0.00 46.24 4.02
548 554 2.618053 GTGTGGGAAGGTTCTACATCG 58.382 52.381 4.48 0.00 31.09 3.84
572 578 3.643237 TCTTCCTCCCACGAATCATACT 58.357 45.455 0.00 0.00 0.00 2.12
589 595 1.076777 CTGTTTCCGATGGGGCCAT 60.077 57.895 4.39 0.00 39.69 4.40
591 597 0.182537 TGTTTCCGATGGGGCCATAG 59.817 55.000 4.39 0.00 36.70 2.23
594 600 2.038863 TTCCGATGGGGCCATAGTAT 57.961 50.000 4.39 0.00 36.70 2.12
623 632 1.215647 GTTCTCCTCGACACCGCAT 59.784 57.895 0.00 0.00 35.37 4.73
639 648 1.333169 CGCATCCCGATCGTCATTTTG 60.333 52.381 15.09 4.12 40.02 2.44
652 662 2.845967 GTCATTTTGTTGCCGCTATTCG 59.154 45.455 0.00 0.00 38.08 3.34
779 793 2.159338 GCTAACACATCCGTCGGTTCTA 60.159 50.000 11.88 0.00 0.00 2.10
792 806 4.142315 CGTCGGTTCTATTAGGAGAAACCA 60.142 45.833 10.82 0.00 39.58 3.67
1015 1029 1.152756 GCTATGGATGGGGGCGTTT 60.153 57.895 0.00 0.00 0.00 3.60
1136 1150 3.386237 GGCTGCGTCTGAGGAGGT 61.386 66.667 0.82 0.00 0.00 3.85
1152 1166 2.110213 GTGTCGGTTGAGGGTGCA 59.890 61.111 0.00 0.00 0.00 4.57
1156 1170 1.911269 TCGGTTGAGGGTGCAGCTA 60.911 57.895 16.65 0.00 0.00 3.32
1184 1198 2.815308 CGGGATAGCTTCCGCAGT 59.185 61.111 9.34 0.00 46.52 4.40
1243 1257 1.990060 GCAGTGGCTGGGGACTCTA 60.990 63.158 0.00 0.00 36.96 2.43
1308 1322 0.610174 TCTCGGCAAGTGCTTCAGAT 59.390 50.000 2.85 0.00 41.70 2.90
1318 1332 1.219124 GCTTCAGATCAGGGCACGA 59.781 57.895 0.00 0.00 0.00 4.35
1342 1356 0.392461 TTTGTCCTCGGCTACATGGC 60.392 55.000 0.00 0.00 37.94 4.40
1369 1383 5.719563 TGTCCAGATAGGTAAGTGTCATTCA 59.280 40.000 0.00 0.00 39.02 2.57
1443 1457 9.520204 GAATGCAATGTTAGTAGCAATACATTT 57.480 29.630 0.00 0.00 38.71 2.32
1472 1486 6.432162 CCAGTAGCAATTATCATGCATAGGTT 59.568 38.462 0.00 0.00 46.22 3.50
1659 1680 7.075741 ACGATGTTTTTATTTTGAGAAGGTCG 58.924 34.615 0.00 0.00 0.00 4.79
1964 4465 7.060600 TGATACTACAAACAAGAGAAATGCG 57.939 36.000 0.00 0.00 0.00 4.73
2053 4555 1.994779 GTTGTTTGCTGCCATACATGC 59.005 47.619 0.00 0.00 33.83 4.06
2214 4719 4.240096 CAATGGGCACTAGAAGCAAAAAG 58.760 43.478 12.59 0.00 0.00 2.27
2276 4781 0.106149 AGGCTCGGTTCGTGAACTTT 59.894 50.000 12.10 0.00 40.94 2.66
2286 4801 8.984891 TCGGTTCGTGAACTTTATCTAATTTA 57.015 30.769 12.10 0.00 40.94 1.40
2310 4825 9.781834 TTATGTCACTTAAAGTCACTTTTGTTG 57.218 29.630 8.41 3.46 35.21 3.33
2311 4826 6.090129 TGTCACTTAAAGTCACTTTTGTTGC 58.910 36.000 8.41 4.47 35.21 4.17
2312 4827 6.072175 TGTCACTTAAAGTCACTTTTGTTGCT 60.072 34.615 8.41 0.00 35.21 3.91
2313 4828 6.251376 GTCACTTAAAGTCACTTTTGTTGCTG 59.749 38.462 8.41 0.00 35.21 4.41
2314 4829 5.004726 CACTTAAAGTCACTTTTGTTGCTGC 59.995 40.000 8.41 0.00 35.21 5.25
2315 4830 3.874392 AAAGTCACTTTTGTTGCTGCT 57.126 38.095 0.00 0.00 28.27 4.24
2316 4831 3.427161 AAGTCACTTTTGTTGCTGCTC 57.573 42.857 0.00 0.00 0.00 4.26
2317 4832 2.368439 AGTCACTTTTGTTGCTGCTCA 58.632 42.857 0.00 0.00 0.00 4.26
2318 4833 2.954318 AGTCACTTTTGTTGCTGCTCAT 59.046 40.909 0.00 0.00 0.00 2.90
2319 4834 3.047796 GTCACTTTTGTTGCTGCTCATG 58.952 45.455 0.00 0.00 0.00 3.07
2320 4835 2.689471 TCACTTTTGTTGCTGCTCATGT 59.311 40.909 0.00 0.00 0.00 3.21
2321 4836 3.047796 CACTTTTGTTGCTGCTCATGTC 58.952 45.455 0.00 0.00 0.00 3.06
2322 4837 2.689471 ACTTTTGTTGCTGCTCATGTCA 59.311 40.909 0.00 0.00 0.00 3.58
2323 4838 3.319972 ACTTTTGTTGCTGCTCATGTCAT 59.680 39.130 0.00 0.00 0.00 3.06
2324 4839 3.291809 TTTGTTGCTGCTCATGTCATG 57.708 42.857 6.47 6.47 0.00 3.07
2325 4840 1.900245 TGTTGCTGCTCATGTCATGT 58.100 45.000 12.54 0.00 0.00 3.21
2326 4841 2.232399 TGTTGCTGCTCATGTCATGTT 58.768 42.857 12.54 0.00 0.00 2.71
2327 4842 2.030628 TGTTGCTGCTCATGTCATGTTG 60.031 45.455 12.54 8.16 0.00 3.33
2328 4843 1.900245 TGCTGCTCATGTCATGTTGT 58.100 45.000 12.54 0.00 0.00 3.32
2329 4844 1.538075 TGCTGCTCATGTCATGTTGTG 59.462 47.619 12.54 4.05 0.00 3.33
2330 4845 1.538512 GCTGCTCATGTCATGTTGTGT 59.461 47.619 12.54 0.00 0.00 3.72
2331 4846 2.667448 GCTGCTCATGTCATGTTGTGTG 60.667 50.000 12.54 1.89 0.00 3.82
2332 4847 1.881324 TGCTCATGTCATGTTGTGTGG 59.119 47.619 12.54 0.00 0.00 4.17
2333 4848 2.153645 GCTCATGTCATGTTGTGTGGA 58.846 47.619 12.54 0.00 0.00 4.02
2334 4849 2.095567 GCTCATGTCATGTTGTGTGGAC 60.096 50.000 12.54 0.00 0.00 4.02
2335 4850 3.405831 CTCATGTCATGTTGTGTGGACT 58.594 45.455 12.54 0.00 0.00 3.85
2336 4851 3.817084 CTCATGTCATGTTGTGTGGACTT 59.183 43.478 12.54 0.00 0.00 3.01
2337 4852 3.565063 TCATGTCATGTTGTGTGGACTTG 59.435 43.478 12.54 0.00 37.00 3.16
2338 4853 2.296792 TGTCATGTTGTGTGGACTTGG 58.703 47.619 0.00 0.00 0.00 3.61
2339 4854 2.092699 TGTCATGTTGTGTGGACTTGGA 60.093 45.455 0.00 0.00 0.00 3.53
2340 4855 2.290641 GTCATGTTGTGTGGACTTGGAC 59.709 50.000 0.00 0.00 0.00 4.02
2341 4856 2.172505 TCATGTTGTGTGGACTTGGACT 59.827 45.455 0.00 0.00 0.00 3.85
2342 4857 2.325583 TGTTGTGTGGACTTGGACTC 57.674 50.000 0.00 0.00 0.00 3.36
2343 4858 1.217882 GTTGTGTGGACTTGGACTCG 58.782 55.000 0.00 0.00 0.00 4.18
2344 4859 0.828022 TTGTGTGGACTTGGACTCGT 59.172 50.000 0.00 0.00 0.00 4.18
2345 4860 0.104120 TGTGTGGACTTGGACTCGTG 59.896 55.000 0.00 0.00 0.00 4.35
2346 4861 0.104304 GTGTGGACTTGGACTCGTGT 59.896 55.000 0.00 0.00 0.00 4.49
2347 4862 1.338973 GTGTGGACTTGGACTCGTGTA 59.661 52.381 0.00 0.00 0.00 2.90
2348 4863 2.029290 GTGTGGACTTGGACTCGTGTAT 60.029 50.000 0.00 0.00 0.00 2.29
2349 4864 2.029380 TGTGGACTTGGACTCGTGTATG 60.029 50.000 0.00 0.00 0.00 2.39
2350 4865 2.029290 GTGGACTTGGACTCGTGTATGT 60.029 50.000 0.00 0.00 0.00 2.29
2351 4866 2.029380 TGGACTTGGACTCGTGTATGTG 60.029 50.000 0.00 0.00 0.00 3.21
2352 4867 2.230508 GGACTTGGACTCGTGTATGTGA 59.769 50.000 0.00 0.00 0.00 3.58
2353 4868 3.305813 GGACTTGGACTCGTGTATGTGAA 60.306 47.826 0.00 0.00 0.00 3.18
2354 4869 3.650139 ACTTGGACTCGTGTATGTGAAC 58.350 45.455 0.00 0.00 0.00 3.18
2355 4870 2.736144 TGGACTCGTGTATGTGAACC 57.264 50.000 0.00 0.00 0.00 3.62
2356 4871 2.244695 TGGACTCGTGTATGTGAACCT 58.755 47.619 0.00 0.00 0.00 3.50
2357 4872 3.423749 TGGACTCGTGTATGTGAACCTA 58.576 45.455 0.00 0.00 0.00 3.08
2358 4873 3.827876 TGGACTCGTGTATGTGAACCTAA 59.172 43.478 0.00 0.00 0.00 2.69
2359 4874 4.281435 TGGACTCGTGTATGTGAACCTAAA 59.719 41.667 0.00 0.00 0.00 1.85
2360 4875 4.863131 GGACTCGTGTATGTGAACCTAAAG 59.137 45.833 0.00 0.00 0.00 1.85
2361 4876 5.464030 ACTCGTGTATGTGAACCTAAAGT 57.536 39.130 0.00 0.00 0.00 2.66
2362 4877 5.467705 ACTCGTGTATGTGAACCTAAAGTC 58.532 41.667 0.00 0.00 0.00 3.01
2363 4878 5.010314 ACTCGTGTATGTGAACCTAAAGTCA 59.990 40.000 0.00 0.00 0.00 3.41
2364 4879 5.224888 TCGTGTATGTGAACCTAAAGTCAC 58.775 41.667 0.00 0.00 0.00 3.67
2365 4880 5.010314 TCGTGTATGTGAACCTAAAGTCACT 59.990 40.000 5.49 0.00 34.51 3.41
2366 4881 5.694910 CGTGTATGTGAACCTAAAGTCACTT 59.305 40.000 5.49 0.00 34.51 3.16
2367 4882 6.202188 CGTGTATGTGAACCTAAAGTCACTTT 59.798 38.462 8.15 8.15 37.46 2.66
2368 4883 7.254658 CGTGTATGTGAACCTAAAGTCACTTTT 60.255 37.037 8.41 0.00 35.21 2.27
2369 4884 7.855904 GTGTATGTGAACCTAAAGTCACTTTTG 59.144 37.037 8.41 6.42 35.21 2.44
2370 4885 7.554835 TGTATGTGAACCTAAAGTCACTTTTGT 59.445 33.333 8.41 3.74 35.21 2.83
2371 4886 6.827586 TGTGAACCTAAAGTCACTTTTGTT 57.172 33.333 8.41 12.21 35.21 2.83
2372 4887 7.925043 TGTGAACCTAAAGTCACTTTTGTTA 57.075 32.000 8.41 0.00 35.21 2.41
2373 4888 7.754625 TGTGAACCTAAAGTCACTTTTGTTAC 58.245 34.615 8.41 11.09 35.21 2.50
2374 4889 7.608761 TGTGAACCTAAAGTCACTTTTGTTACT 59.391 33.333 8.41 0.00 38.41 2.24
2375 4890 7.908601 GTGAACCTAAAGTCACTTTTGTTACTG 59.091 37.037 8.41 0.00 37.02 2.74
2376 4891 6.373186 ACCTAAAGTCACTTTTGTTACTGC 57.627 37.500 8.41 0.00 37.02 4.40
2377 4892 6.120220 ACCTAAAGTCACTTTTGTTACTGCT 58.880 36.000 8.41 0.00 37.02 4.24
2378 4893 6.260271 ACCTAAAGTCACTTTTGTTACTGCTC 59.740 38.462 8.41 0.00 37.02 4.26
2379 4894 4.795970 AAGTCACTTTTGTTACTGCTCG 57.204 40.909 0.00 0.00 37.02 5.03
2380 4895 3.793559 AGTCACTTTTGTTACTGCTCGT 58.206 40.909 0.00 0.00 35.74 4.18
2381 4896 3.555956 AGTCACTTTTGTTACTGCTCGTG 59.444 43.478 0.00 0.00 35.74 4.35
2382 4897 3.308866 GTCACTTTTGTTACTGCTCGTGT 59.691 43.478 0.00 0.00 0.00 4.49
2383 4898 3.554324 TCACTTTTGTTACTGCTCGTGTC 59.446 43.478 0.00 0.00 0.00 3.67
2384 4899 3.308595 CACTTTTGTTACTGCTCGTGTCA 59.691 43.478 0.00 0.00 0.00 3.58
2385 4900 4.024893 CACTTTTGTTACTGCTCGTGTCAT 60.025 41.667 0.00 0.00 0.00 3.06
2386 4901 4.024893 ACTTTTGTTACTGCTCGTGTCATG 60.025 41.667 0.00 0.00 0.00 3.07
2387 4902 2.812358 TGTTACTGCTCGTGTCATGT 57.188 45.000 0.00 0.00 0.00 3.21
2388 4903 3.106242 TGTTACTGCTCGTGTCATGTT 57.894 42.857 0.00 0.00 0.00 2.71
2389 4904 2.799978 TGTTACTGCTCGTGTCATGTTG 59.200 45.455 0.00 0.00 0.00 3.33
2390 4905 2.800544 GTTACTGCTCGTGTCATGTTGT 59.199 45.455 0.00 0.00 0.00 3.32
2391 4906 1.220529 ACTGCTCGTGTCATGTTGTG 58.779 50.000 0.00 0.00 0.00 3.33
2392 4907 1.220529 CTGCTCGTGTCATGTTGTGT 58.779 50.000 0.00 0.00 0.00 3.72
2393 4908 0.936600 TGCTCGTGTCATGTTGTGTG 59.063 50.000 0.00 0.00 0.00 3.82
2394 4909 0.235665 GCTCGTGTCATGTTGTGTGG 59.764 55.000 0.00 0.00 0.00 4.17
2395 4910 1.864565 CTCGTGTCATGTTGTGTGGA 58.135 50.000 0.00 0.00 0.00 4.02
2396 4911 1.526887 CTCGTGTCATGTTGTGTGGAC 59.473 52.381 0.00 0.00 0.00 4.02
2397 4912 1.138069 TCGTGTCATGTTGTGTGGACT 59.862 47.619 0.00 0.00 0.00 3.85
2398 4913 1.939934 CGTGTCATGTTGTGTGGACTT 59.060 47.619 0.00 0.00 0.00 3.01
2399 4914 2.286359 CGTGTCATGTTGTGTGGACTTG 60.286 50.000 0.00 0.00 0.00 3.16
2400 4915 2.033299 GTGTCATGTTGTGTGGACTTGG 59.967 50.000 0.00 0.00 0.00 3.61
2401 4916 2.092699 TGTCATGTTGTGTGGACTTGGA 60.093 45.455 0.00 0.00 0.00 3.53
2402 4917 2.290641 GTCATGTTGTGTGGACTTGGAC 59.709 50.000 0.00 0.00 0.00 4.02
2403 4918 2.172505 TCATGTTGTGTGGACTTGGACT 59.827 45.455 0.00 0.00 0.00 3.85
2404 4919 2.799126 TGTTGTGTGGACTTGGACTT 57.201 45.000 0.00 0.00 0.00 3.01
2405 4920 2.364632 TGTTGTGTGGACTTGGACTTG 58.635 47.619 0.00 0.00 0.00 3.16
2406 4921 2.290641 TGTTGTGTGGACTTGGACTTGT 60.291 45.455 0.00 0.00 0.00 3.16
2407 4922 2.036958 TGTGTGGACTTGGACTTGTG 57.963 50.000 0.00 0.00 0.00 3.33
2408 4923 1.280710 TGTGTGGACTTGGACTTGTGT 59.719 47.619 0.00 0.00 0.00 3.72
2409 4924 2.502130 TGTGTGGACTTGGACTTGTGTA 59.498 45.455 0.00 0.00 0.00 2.90
2410 4925 3.135712 TGTGTGGACTTGGACTTGTGTAT 59.864 43.478 0.00 0.00 0.00 2.29
2411 4926 3.498397 GTGTGGACTTGGACTTGTGTATG 59.502 47.826 0.00 0.00 0.00 2.39
2412 4927 3.135712 TGTGGACTTGGACTTGTGTATGT 59.864 43.478 0.00 0.00 0.00 2.29
2413 4928 3.498397 GTGGACTTGGACTTGTGTATGTG 59.502 47.826 0.00 0.00 0.00 3.21
2414 4929 3.389656 TGGACTTGGACTTGTGTATGTGA 59.610 43.478 0.00 0.00 0.00 3.58
2417 4932 4.134563 ACTTGGACTTGTGTATGTGAACC 58.865 43.478 0.00 0.00 0.00 3.62
2422 4937 5.995282 TGGACTTGTGTATGTGAACCTAAAG 59.005 40.000 0.00 0.00 0.00 1.85
2465 5174 7.926674 TGTCATGCATATATTATGGACTTGG 57.073 36.000 0.00 0.00 0.00 3.61
2605 5447 3.678289 TGGATGTGAGTCTGGATGTTTG 58.322 45.455 0.00 0.00 0.00 2.93
2807 5664 5.415389 GGTTCTGCCCAATTTTGCAATTAAT 59.585 36.000 0.00 0.00 36.98 1.40
2811 5668 7.393216 TCTGCCCAATTTTGCAATTAATAACT 58.607 30.769 0.00 0.00 36.98 2.24
2858 5717 6.042143 GTGAATGATTTTGGTCACAAGTTGT 58.958 36.000 1.64 1.64 40.10 3.32
3133 6181 8.641155 TCATACACGAGTTTGTCTTAATTTACG 58.359 33.333 3.69 0.00 0.00 3.18
3140 6188 8.879299 CGAGTTTGTCTTAATTTACGTTGAAAG 58.121 33.333 0.00 0.00 0.00 2.62
3191 6239 4.384056 AGATAAGAGATGGTTGGCATTCG 58.616 43.478 0.00 0.00 0.00 3.34
3233 6287 4.389077 GGTTGGAGAAGACAAGTGATTACG 59.611 45.833 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.469200 CAAAATCTAGGCAATGGTGAAGAATAA 58.531 33.333 0.00 0.00 0.00 1.40
202 208 6.923508 TGAATACATAAGTCATAGGTGCGAAG 59.076 38.462 0.00 0.00 29.89 3.79
263 269 2.640184 GGGGCAATACTTAGTCACCAC 58.360 52.381 0.00 0.00 0.00 4.16
448 454 7.793927 AGTCAAATCCTTGCTAATACTAAGC 57.206 36.000 0.00 0.00 40.50 3.09
506 512 1.656095 GTTCGGAGAGCATTGAAGACG 59.344 52.381 0.00 0.00 37.80 4.18
548 554 1.278127 TGATTCGTGGGAGGAAGAACC 59.722 52.381 0.00 0.00 39.35 3.62
572 578 0.182537 CTATGGCCCCATCGGAAACA 59.817 55.000 0.00 0.00 37.82 2.83
615 624 3.426117 GACGATCGGGATGCGGTGT 62.426 63.158 20.98 0.00 0.00 4.16
623 632 1.466950 GCAACAAAATGACGATCGGGA 59.533 47.619 20.98 5.34 0.00 5.14
652 662 1.002792 GTCTTTCAACCACAGCGTTCC 60.003 52.381 0.00 0.00 0.00 3.62
657 667 1.865865 TCTCGTCTTTCAACCACAGC 58.134 50.000 0.00 0.00 0.00 4.40
658 668 4.875544 TTTTCTCGTCTTTCAACCACAG 57.124 40.909 0.00 0.00 0.00 3.66
739 749 6.659242 TGTTAGCAAGGGAAAAGATAAGGAAG 59.341 38.462 0.00 0.00 0.00 3.46
740 750 6.433093 GTGTTAGCAAGGGAAAAGATAAGGAA 59.567 38.462 0.00 0.00 0.00 3.36
741 751 5.944007 GTGTTAGCAAGGGAAAAGATAAGGA 59.056 40.000 0.00 0.00 0.00 3.36
742 752 5.710099 TGTGTTAGCAAGGGAAAAGATAAGG 59.290 40.000 0.00 0.00 0.00 2.69
758 772 0.997196 GAACCGACGGATGTGTTAGC 59.003 55.000 23.38 0.00 0.00 3.09
779 793 7.175104 TGCAGACTTTAATGGTTTCTCCTAAT 58.825 34.615 0.00 0.00 37.07 1.73
792 806 4.943705 ACATCGGTCAATGCAGACTTTAAT 59.056 37.500 6.11 0.00 38.57 1.40
1015 1029 1.215382 CGTTGTCTCCATCCGCAGA 59.785 57.895 0.00 0.00 0.00 4.26
1136 1150 2.425592 CTGCACCCTCAACCGACA 59.574 61.111 0.00 0.00 0.00 4.35
1152 1166 3.771160 CCGTCGGCACCCTTAGCT 61.771 66.667 0.00 0.00 0.00 3.32
1156 1170 2.364579 TATCCCGTCGGCACCCTT 60.365 61.111 5.50 0.00 0.00 3.95
1184 1198 4.680237 CAGTCGAGCCACCGCCAA 62.680 66.667 0.00 0.00 34.57 4.52
1202 1216 2.589540 CTTGACCCATGCCCGCTA 59.410 61.111 0.00 0.00 0.00 4.26
1210 1224 4.349503 TGCTGCGCCTTGACCCAT 62.350 61.111 4.18 0.00 0.00 4.00
1289 1303 0.610174 ATCTGAAGCACTTGCCGAGA 59.390 50.000 0.00 0.00 43.38 4.04
1308 1322 1.300620 CAAACGAGTCGTGCCCTGA 60.301 57.895 20.68 0.00 39.99 3.86
1318 1332 0.243095 GTAGCCGAGGACAAACGAGT 59.757 55.000 0.00 0.00 0.00 4.18
1342 1356 2.758979 ACACTTACCTATCTGGACACGG 59.241 50.000 0.00 0.00 39.71 4.94
1369 1383 7.831193 AGCAATTACATTCACTTGAACTCCTAT 59.169 33.333 0.00 0.00 36.80 2.57
1443 1457 5.623169 TGCATGATAATTGCTACTGGATGA 58.377 37.500 0.00 0.00 40.77 2.92
1472 1486 3.559655 CACAGCTACACAAACTAGCACAA 59.440 43.478 0.00 0.00 39.36 3.33
1964 4465 3.305720 AGTTCACCTTTTTCCCCCTTTC 58.694 45.455 0.00 0.00 0.00 2.62
2214 4719 0.466124 CAGGGCTGGCTAGGTAAGAC 59.534 60.000 0.00 0.00 0.00 3.01
2244 4749 1.466558 CCGAGCCTTCTTTTGCTTCTC 59.533 52.381 0.00 0.00 38.11 2.87
2286 4801 6.751888 GCAACAAAAGTGACTTTAAGTGACAT 59.248 34.615 16.22 2.06 34.67 3.06
2299 4814 2.689471 ACATGAGCAGCAACAAAAGTGA 59.311 40.909 0.00 0.00 0.00 3.41
2300 4815 3.047796 GACATGAGCAGCAACAAAAGTG 58.952 45.455 0.00 0.00 0.00 3.16
2301 4816 2.689471 TGACATGAGCAGCAACAAAAGT 59.311 40.909 0.00 0.00 0.00 2.66
2302 4817 3.358707 TGACATGAGCAGCAACAAAAG 57.641 42.857 0.00 0.00 0.00 2.27
2303 4818 3.068448 ACATGACATGAGCAGCAACAAAA 59.932 39.130 22.19 0.00 0.00 2.44
2304 4819 2.624364 ACATGACATGAGCAGCAACAAA 59.376 40.909 22.19 0.00 0.00 2.83
2305 4820 2.232399 ACATGACATGAGCAGCAACAA 58.768 42.857 22.19 0.00 0.00 2.83
2306 4821 1.900245 ACATGACATGAGCAGCAACA 58.100 45.000 22.19 0.00 0.00 3.33
2307 4822 2.030540 ACAACATGACATGAGCAGCAAC 60.031 45.455 22.19 0.00 0.00 4.17
2308 4823 2.030628 CACAACATGACATGAGCAGCAA 60.031 45.455 22.19 0.00 0.00 3.91
2309 4824 1.538075 CACAACATGACATGAGCAGCA 59.462 47.619 22.19 0.00 0.00 4.41
2310 4825 1.538512 ACACAACATGACATGAGCAGC 59.461 47.619 22.19 0.00 0.00 5.25
2311 4826 2.095415 CCACACAACATGACATGAGCAG 60.095 50.000 22.19 10.90 0.00 4.24
2312 4827 1.881324 CCACACAACATGACATGAGCA 59.119 47.619 22.19 0.00 0.00 4.26
2313 4828 2.095567 GTCCACACAACATGACATGAGC 60.096 50.000 22.19 0.00 0.00 4.26
2314 4829 3.405831 AGTCCACACAACATGACATGAG 58.594 45.455 22.19 15.14 0.00 2.90
2315 4830 3.490439 AGTCCACACAACATGACATGA 57.510 42.857 22.19 0.00 0.00 3.07
2316 4831 3.304861 CCAAGTCCACACAACATGACATG 60.305 47.826 14.02 14.02 0.00 3.21
2317 4832 2.886523 CCAAGTCCACACAACATGACAT 59.113 45.455 0.00 0.00 0.00 3.06
2318 4833 2.092699 TCCAAGTCCACACAACATGACA 60.093 45.455 0.00 0.00 0.00 3.58
2319 4834 2.290641 GTCCAAGTCCACACAACATGAC 59.709 50.000 0.00 0.00 0.00 3.06
2320 4835 2.172505 AGTCCAAGTCCACACAACATGA 59.827 45.455 0.00 0.00 0.00 3.07
2321 4836 2.549754 GAGTCCAAGTCCACACAACATG 59.450 50.000 0.00 0.00 0.00 3.21
2322 4837 2.806745 CGAGTCCAAGTCCACACAACAT 60.807 50.000 0.00 0.00 0.00 2.71
2323 4838 1.472552 CGAGTCCAAGTCCACACAACA 60.473 52.381 0.00 0.00 0.00 3.33
2324 4839 1.217882 CGAGTCCAAGTCCACACAAC 58.782 55.000 0.00 0.00 0.00 3.32
2325 4840 0.828022 ACGAGTCCAAGTCCACACAA 59.172 50.000 0.00 0.00 0.00 3.33
2326 4841 0.104120 CACGAGTCCAAGTCCACACA 59.896 55.000 0.00 0.00 0.00 3.72
2327 4842 0.104304 ACACGAGTCCAAGTCCACAC 59.896 55.000 0.00 0.00 0.00 3.82
2328 4843 1.694844 TACACGAGTCCAAGTCCACA 58.305 50.000 0.00 0.00 0.00 4.17
2329 4844 2.029290 ACATACACGAGTCCAAGTCCAC 60.029 50.000 0.00 0.00 0.00 4.02
2330 4845 2.029380 CACATACACGAGTCCAAGTCCA 60.029 50.000 0.00 0.00 0.00 4.02
2331 4846 2.230508 TCACATACACGAGTCCAAGTCC 59.769 50.000 0.00 0.00 0.00 3.85
2332 4847 3.570926 TCACATACACGAGTCCAAGTC 57.429 47.619 0.00 0.00 0.00 3.01
2333 4848 3.554337 GGTTCACATACACGAGTCCAAGT 60.554 47.826 0.00 0.00 0.00 3.16
2334 4849 2.993899 GGTTCACATACACGAGTCCAAG 59.006 50.000 0.00 0.00 0.00 3.61
2335 4850 2.631062 AGGTTCACATACACGAGTCCAA 59.369 45.455 0.00 0.00 0.00 3.53
2336 4851 2.244695 AGGTTCACATACACGAGTCCA 58.755 47.619 0.00 0.00 0.00 4.02
2337 4852 4.445452 TTAGGTTCACATACACGAGTCC 57.555 45.455 0.00 0.00 0.00 3.85
2338 4853 5.467705 ACTTTAGGTTCACATACACGAGTC 58.532 41.667 0.00 0.00 0.00 3.36
2339 4854 5.010314 TGACTTTAGGTTCACATACACGAGT 59.990 40.000 0.00 0.00 0.00 4.18
2340 4855 5.345202 GTGACTTTAGGTTCACATACACGAG 59.655 44.000 0.00 0.00 33.69 4.18
2341 4856 5.010314 AGTGACTTTAGGTTCACATACACGA 59.990 40.000 4.66 0.00 35.73 4.35
2342 4857 5.227908 AGTGACTTTAGGTTCACATACACG 58.772 41.667 4.66 0.00 35.73 4.49
2343 4858 7.492352 AAAGTGACTTTAGGTTCACATACAC 57.508 36.000 9.13 0.00 35.73 2.90
2344 4859 7.554835 ACAAAAGTGACTTTAGGTTCACATACA 59.445 33.333 11.43 0.00 31.99 2.29
2345 4860 7.927048 ACAAAAGTGACTTTAGGTTCACATAC 58.073 34.615 11.43 0.00 31.99 2.39
2346 4861 8.514330 AACAAAAGTGACTTTAGGTTCACATA 57.486 30.769 11.43 0.00 31.99 2.29
2347 4862 7.404671 AACAAAAGTGACTTTAGGTTCACAT 57.595 32.000 11.43 0.00 31.99 3.21
2348 4863 6.827586 AACAAAAGTGACTTTAGGTTCACA 57.172 33.333 11.43 0.00 31.99 3.58
2349 4864 7.908601 CAGTAACAAAAGTGACTTTAGGTTCAC 59.091 37.037 22.80 19.00 34.91 3.18
2350 4865 7.414762 GCAGTAACAAAAGTGACTTTAGGTTCA 60.415 37.037 22.80 12.27 34.91 3.18
2351 4866 6.910972 GCAGTAACAAAAGTGACTTTAGGTTC 59.089 38.462 22.80 16.73 34.91 3.62
2352 4867 6.602009 AGCAGTAACAAAAGTGACTTTAGGTT 59.398 34.615 22.75 22.75 36.16 3.50
2353 4868 6.120220 AGCAGTAACAAAAGTGACTTTAGGT 58.880 36.000 11.43 9.91 31.99 3.08
2354 4869 6.564125 CGAGCAGTAACAAAAGTGACTTTAGG 60.564 42.308 11.43 9.28 31.99 2.69
2355 4870 6.018994 ACGAGCAGTAACAAAAGTGACTTTAG 60.019 38.462 11.43 0.00 31.99 1.85
2356 4871 5.813672 ACGAGCAGTAACAAAAGTGACTTTA 59.186 36.000 11.43 0.00 31.99 1.85
2357 4872 4.634443 ACGAGCAGTAACAAAAGTGACTTT 59.366 37.500 4.45 4.45 34.94 2.66
2358 4873 4.034048 CACGAGCAGTAACAAAAGTGACTT 59.966 41.667 0.00 0.00 0.00 3.01
2359 4874 3.555956 CACGAGCAGTAACAAAAGTGACT 59.444 43.478 0.00 0.00 0.00 3.41
2360 4875 3.308866 ACACGAGCAGTAACAAAAGTGAC 59.691 43.478 0.00 0.00 33.18 3.67
2361 4876 3.527533 ACACGAGCAGTAACAAAAGTGA 58.472 40.909 0.00 0.00 33.18 3.41
2362 4877 3.308595 TGACACGAGCAGTAACAAAAGTG 59.691 43.478 0.00 0.00 34.85 3.16
2363 4878 3.527533 TGACACGAGCAGTAACAAAAGT 58.472 40.909 0.00 0.00 0.00 2.66
2364 4879 4.024893 ACATGACACGAGCAGTAACAAAAG 60.025 41.667 0.00 0.00 0.00 2.27
2365 4880 3.874543 ACATGACACGAGCAGTAACAAAA 59.125 39.130 0.00 0.00 0.00 2.44
2366 4881 3.462982 ACATGACACGAGCAGTAACAAA 58.537 40.909 0.00 0.00 0.00 2.83
2367 4882 3.106242 ACATGACACGAGCAGTAACAA 57.894 42.857 0.00 0.00 0.00 2.83
2368 4883 2.799978 CAACATGACACGAGCAGTAACA 59.200 45.455 0.00 0.00 0.00 2.41
2369 4884 2.800544 ACAACATGACACGAGCAGTAAC 59.199 45.455 0.00 0.00 0.00 2.50
2370 4885 2.799978 CACAACATGACACGAGCAGTAA 59.200 45.455 0.00 0.00 0.00 2.24
2371 4886 2.223947 ACACAACATGACACGAGCAGTA 60.224 45.455 0.00 0.00 0.00 2.74
2372 4887 1.220529 CACAACATGACACGAGCAGT 58.779 50.000 0.00 0.00 0.00 4.40
2373 4888 1.070376 CACACAACATGACACGAGCAG 60.070 52.381 0.00 0.00 0.00 4.24
2374 4889 0.936600 CACACAACATGACACGAGCA 59.063 50.000 0.00 0.00 0.00 4.26
2375 4890 0.235665 CCACACAACATGACACGAGC 59.764 55.000 0.00 0.00 0.00 5.03
2376 4891 1.526887 GTCCACACAACATGACACGAG 59.473 52.381 0.00 0.00 0.00 4.18
2377 4892 1.138069 AGTCCACACAACATGACACGA 59.862 47.619 0.00 0.00 0.00 4.35
2378 4893 1.581934 AGTCCACACAACATGACACG 58.418 50.000 0.00 0.00 0.00 4.49
2379 4894 2.033299 CCAAGTCCACACAACATGACAC 59.967 50.000 0.00 0.00 0.00 3.67
2380 4895 2.092699 TCCAAGTCCACACAACATGACA 60.093 45.455 0.00 0.00 0.00 3.58
2381 4896 2.290641 GTCCAAGTCCACACAACATGAC 59.709 50.000 0.00 0.00 0.00 3.06
2382 4897 2.172505 AGTCCAAGTCCACACAACATGA 59.827 45.455 0.00 0.00 0.00 3.07
2383 4898 2.575532 AGTCCAAGTCCACACAACATG 58.424 47.619 0.00 0.00 0.00 3.21
2384 4899 2.951642 CAAGTCCAAGTCCACACAACAT 59.048 45.455 0.00 0.00 0.00 2.71
2385 4900 2.290641 ACAAGTCCAAGTCCACACAACA 60.291 45.455 0.00 0.00 0.00 3.33
2386 4901 2.097466 CACAAGTCCAAGTCCACACAAC 59.903 50.000 0.00 0.00 0.00 3.32
2387 4902 2.290641 ACACAAGTCCAAGTCCACACAA 60.291 45.455 0.00 0.00 0.00 3.33
2388 4903 1.280710 ACACAAGTCCAAGTCCACACA 59.719 47.619 0.00 0.00 0.00 3.72
2389 4904 2.038387 ACACAAGTCCAAGTCCACAC 57.962 50.000 0.00 0.00 0.00 3.82
2390 4905 3.135712 ACATACACAAGTCCAAGTCCACA 59.864 43.478 0.00 0.00 0.00 4.17
2391 4906 3.498397 CACATACACAAGTCCAAGTCCAC 59.502 47.826 0.00 0.00 0.00 4.02
2392 4907 3.389656 TCACATACACAAGTCCAAGTCCA 59.610 43.478 0.00 0.00 0.00 4.02
2393 4908 4.002906 TCACATACACAAGTCCAAGTCC 57.997 45.455 0.00 0.00 0.00 3.85
2394 4909 4.213482 GGTTCACATACACAAGTCCAAGTC 59.787 45.833 0.00 0.00 0.00 3.01
2395 4910 4.134563 GGTTCACATACACAAGTCCAAGT 58.865 43.478 0.00 0.00 0.00 3.16
2396 4911 4.389374 AGGTTCACATACACAAGTCCAAG 58.611 43.478 0.00 0.00 0.00 3.61
2397 4912 4.431416 AGGTTCACATACACAAGTCCAA 57.569 40.909 0.00 0.00 0.00 3.53
2398 4913 5.554437 TTAGGTTCACATACACAAGTCCA 57.446 39.130 0.00 0.00 0.00 4.02
2399 4914 5.995897 ACTTTAGGTTCACATACACAAGTCC 59.004 40.000 0.00 0.00 0.00 3.85
2400 4915 6.704493 TGACTTTAGGTTCACATACACAAGTC 59.296 38.462 7.35 7.35 0.00 3.01
2401 4916 6.482308 GTGACTTTAGGTTCACATACACAAGT 59.518 38.462 0.00 0.00 33.69 3.16
2402 4917 6.706270 AGTGACTTTAGGTTCACATACACAAG 59.294 38.462 4.66 0.00 35.73 3.16
2403 4918 6.588204 AGTGACTTTAGGTTCACATACACAA 58.412 36.000 4.66 0.00 35.73 3.33
2404 4919 6.169557 AGTGACTTTAGGTTCACATACACA 57.830 37.500 4.66 0.00 35.73 3.72
2405 4920 7.492352 AAAGTGACTTTAGGTTCACATACAC 57.508 36.000 9.13 0.00 35.73 2.90
2406 4921 7.554835 ACAAAAGTGACTTTAGGTTCACATACA 59.445 33.333 11.43 0.00 31.99 2.29
2407 4922 7.855904 CACAAAAGTGACTTTAGGTTCACATAC 59.144 37.037 11.43 0.00 31.99 2.39
2408 4923 7.468084 GCACAAAAGTGACTTTAGGTTCACATA 60.468 37.037 11.43 0.00 31.99 2.29
2409 4924 6.680378 GCACAAAAGTGACTTTAGGTTCACAT 60.680 38.462 11.43 0.00 31.99 3.21
2410 4925 5.392595 GCACAAAAGTGACTTTAGGTTCACA 60.393 40.000 11.43 0.00 31.99 3.58
2411 4926 5.034797 GCACAAAAGTGACTTTAGGTTCAC 58.965 41.667 11.43 2.22 31.99 3.18
2412 4927 4.947388 AGCACAAAAGTGACTTTAGGTTCA 59.053 37.500 11.43 0.00 31.99 3.18
2413 4928 5.500645 AGCACAAAAGTGACTTTAGGTTC 57.499 39.130 11.43 7.53 31.99 3.62
2414 4929 6.120220 AGTAGCACAAAAGTGACTTTAGGTT 58.880 36.000 11.43 4.83 31.99 3.50
2417 4932 6.844696 TGAGTAGCACAAAAGTGACTTTAG 57.155 37.500 11.43 5.93 31.99 1.85
2422 4937 4.511454 TGACATGAGTAGCACAAAAGTGAC 59.489 41.667 0.00 0.00 0.00 3.67
2492 5201 1.032014 GCAGCCCAAAAGTGTCTCAA 58.968 50.000 0.00 0.00 0.00 3.02
2807 5664 7.001674 TGAGAAGCAATAACCTTTTCCAGTTA 58.998 34.615 0.00 0.00 33.26 2.24
2811 5668 5.774690 ACATGAGAAGCAATAACCTTTTCCA 59.225 36.000 0.00 0.00 0.00 3.53
2818 5675 6.441093 TCATTCACATGAGAAGCAATAACC 57.559 37.500 11.29 0.00 34.22 2.85
2858 5717 9.135189 CATGAAAAGATGATTTTACCCCTGATA 57.865 33.333 0.00 0.00 0.00 2.15
3133 6181 4.732285 TCGAAACTCTCATGCTTTCAAC 57.268 40.909 0.00 0.00 0.00 3.18
3140 6188 2.003301 GGAGGTTCGAAACTCTCATGC 58.997 52.381 35.22 19.19 33.25 4.06
3201 6251 6.043243 ACTTGTCTTCTCCAACCATCTCTTAA 59.957 38.462 0.00 0.00 0.00 1.85
3233 6287 2.285083 GCCTTTTTGGGTTGTTGGAAC 58.715 47.619 0.00 0.00 36.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.