Multiple sequence alignment - TraesCS5D01G357300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G357300 chr5D 100.000 6792 0 0 1 6792 438111332 438104541 0.000000e+00 12543
1 TraesCS5D01G357300 chr5B 95.549 5055 147 28 1316 6326 532605416 532600396 0.000000e+00 8017
2 TraesCS5D01G357300 chr5B 89.573 1170 60 19 147 1297 532607048 532605922 0.000000e+00 1428
3 TraesCS5D01G357300 chr5B 91.487 787 57 8 4 788 532607626 532606848 0.000000e+00 1074
4 TraesCS5D01G357300 chr5B 87.790 647 67 10 147 791 532607264 532606628 0.000000e+00 747
5 TraesCS5D01G357300 chr5B 87.565 193 16 3 6295 6481 532600473 532600283 4.120000e-52 217
6 TraesCS5D01G357300 chr5B 79.894 189 12 8 6612 6792 532600226 532600056 1.550000e-21 115
7 TraesCS5D01G357300 chr5A 92.875 5333 209 64 958 6221 552958978 552953748 0.000000e+00 7585
8 TraesCS5D01G357300 chr5A 90.368 789 67 6 1 788 552961318 552960538 0.000000e+00 1027
9 TraesCS5D01G357300 chr5A 88.889 792 68 11 147 927 552960089 552959307 0.000000e+00 957
10 TraesCS5D01G357300 chr5A 87.558 643 74 6 147 788 552960306 552959669 0.000000e+00 739
11 TraesCS5D01G357300 chr5A 87.500 648 69 11 147 791 552960739 552960101 0.000000e+00 737
12 TraesCS5D01G357300 chr5A 87.307 646 68 13 147 788 552960956 552960321 0.000000e+00 726
13 TraesCS5D01G357300 chr5A 86.142 635 78 9 147 778 552960523 552959896 0.000000e+00 676
14 TraesCS5D01G357300 chr5A 88.248 451 40 8 6220 6661 552953666 552953220 1.680000e-145 527


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G357300 chr5D 438104541 438111332 6791 True 12543.00 12543 100.000000 1 6792 1 chr5D.!!$R1 6791
1 TraesCS5D01G357300 chr5B 532600056 532607626 7570 True 1933.00 8017 88.643000 4 6792 6 chr5B.!!$R1 6788
2 TraesCS5D01G357300 chr5A 552953220 552961318 8098 True 1621.75 7585 88.610875 1 6661 8 chr5A.!!$R1 6660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.034477 ATAGTGCGTTTGGGAAGGGG 60.034 55.000 0.00 0.00 0.00 4.79 F
953 2054 0.246635 CGAAAAGAGCCGAGGAAGGA 59.753 55.000 0.00 0.00 0.00 3.36 F
1571 3493 0.031994 CAAACCAAAACCCTGGCTCG 59.968 55.000 0.00 0.00 40.45 5.03 F
2323 4286 0.457035 GGAAGGACACATACGGCGTA 59.543 55.000 23.25 23.25 0.00 4.42 F
2401 4365 1.115467 ATGGTTTTGTGTTCCCGCAA 58.885 45.000 0.00 0.00 39.23 4.85 F
2727 4699 1.261619 GGCCTCGCATTTATGTTCGAG 59.738 52.381 0.00 10.76 45.50 4.04 F
2892 4865 2.413453 CTGCAAAGGACTCGAAACTAGC 59.587 50.000 0.00 0.00 0.00 3.42 F
4908 6886 1.728672 GGTAGAAGAGAGTCGCCGG 59.271 63.158 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 3470 0.031994 CGAGCCAGGGTTTTGGTTTG 59.968 55.000 0.00 0.00 40.49 2.93 R
2297 4259 0.108186 TATGTGTCCTTCCTGCGCAG 60.108 55.000 30.52 30.52 0.00 5.18 R
2396 4360 0.455633 GCAAATCAGTCAGCTTGCGG 60.456 55.000 0.00 0.00 35.30 5.69 R
3221 5194 0.877071 CAGAAAGACAACGGCAGCAT 59.123 50.000 0.00 0.00 0.00 3.79 R
3808 5786 1.630369 TGGTGGCACAGAGAGCTTAAT 59.370 47.619 20.82 0.00 41.80 1.40 R
3857 5835 3.445008 TCAAGTGATTAGAGAGGTGGCT 58.555 45.455 0.00 0.00 0.00 4.75 R
5006 6984 2.307686 GGGGAGGTGACTTGTATTGGAA 59.692 50.000 0.00 0.00 44.43 3.53 R
6736 8826 1.134401 TCTCTTTGGGCGCCTATTCTG 60.134 52.381 28.56 13.12 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.387947 GCGACGGGAAGGAGGGAA 61.388 66.667 0.00 0.00 0.00 3.97
106 107 0.034477 ATAGTGCGTTTGGGAAGGGG 60.034 55.000 0.00 0.00 0.00 4.79
260 261 7.041712 TGCAACTGAAATTTTATCACACGACTA 60.042 33.333 0.00 0.00 0.00 2.59
268 269 6.680055 TTTTATCACACGACTAAGAACGAC 57.320 37.500 0.00 0.00 0.00 4.34
338 339 1.663388 ACGTCGCGCTGTGATTTCA 60.663 52.632 5.56 0.00 0.00 2.69
342 343 1.128507 GTCGCGCTGTGATTTCAATCA 59.871 47.619 5.56 0.00 42.78 2.57
352 353 4.339530 TGTGATTTCAATCAAACGACCCAA 59.660 37.500 3.75 0.00 46.13 4.12
415 416 8.690884 TGTCCTTTTTATGTCTCAAAAATGACA 58.309 29.630 18.75 18.75 46.42 3.58
426 427 5.894393 TCTCAAAAATGACAAAACTACCCCA 59.106 36.000 0.00 0.00 0.00 4.96
471 906 6.418057 AAGGGTGCAACTGAAATTTTATCA 57.582 33.333 0.00 0.00 36.74 2.15
472 907 5.783111 AGGGTGCAACTGAAATTTTATCAC 58.217 37.500 0.00 0.00 36.74 3.06
477 912 5.912396 TGCAACTGAAATTTTATCACACGAC 59.088 36.000 0.00 0.00 0.00 4.34
479 914 7.041712 TGCAACTGAAATTTTATCACACGACTA 60.042 33.333 0.00 0.00 0.00 2.59
487 922 6.680055 TTTTATCACACGACTAAGAACGAC 57.320 37.500 0.00 0.00 0.00 4.34
505 940 2.606308 CGACCTGGTAAATATCCGACGG 60.606 54.545 7.84 7.84 0.00 4.79
604 1039 1.619807 TAGGGTTTAGCACGGGGAGC 61.620 60.000 0.00 0.00 0.00 4.70
606 1041 1.449778 GGTTTAGCACGGGGAGCTC 60.450 63.158 4.71 4.71 42.32 4.09
614 1049 4.168291 CGGGGAGCTCCTGCCTTC 62.168 72.222 31.36 14.00 41.86 3.46
646 1081 3.405823 AAAATGACGAAACTACCCCGA 57.594 42.857 0.00 0.00 0.00 5.14
672 1327 6.133356 GGGACATGGAATTTATGAAAGGGTA 58.867 40.000 9.74 0.00 0.00 3.69
942 2043 3.127533 CCCCTGCCGCGAAAAGAG 61.128 66.667 8.23 0.00 0.00 2.85
943 2044 3.804193 CCCTGCCGCGAAAAGAGC 61.804 66.667 8.23 0.58 0.00 4.09
944 2045 3.804193 CCTGCCGCGAAAAGAGCC 61.804 66.667 8.23 0.00 0.00 4.70
945 2046 4.152625 CTGCCGCGAAAAGAGCCG 62.153 66.667 8.23 0.00 0.00 5.52
946 2047 4.673298 TGCCGCGAAAAGAGCCGA 62.673 61.111 8.23 0.00 0.00 5.54
947 2048 3.854459 GCCGCGAAAAGAGCCGAG 61.854 66.667 8.23 0.00 0.00 4.63
948 2049 3.188786 CCGCGAAAAGAGCCGAGG 61.189 66.667 8.23 0.00 39.17 4.63
949 2050 2.126071 CGCGAAAAGAGCCGAGGA 60.126 61.111 0.00 0.00 0.00 3.71
950 2051 1.736645 CGCGAAAAGAGCCGAGGAA 60.737 57.895 0.00 0.00 0.00 3.36
951 2052 1.687494 CGCGAAAAGAGCCGAGGAAG 61.687 60.000 0.00 0.00 0.00 3.46
952 2053 1.362406 GCGAAAAGAGCCGAGGAAGG 61.362 60.000 0.00 0.00 0.00 3.46
953 2054 0.246635 CGAAAAGAGCCGAGGAAGGA 59.753 55.000 0.00 0.00 0.00 3.36
954 2055 1.337823 CGAAAAGAGCCGAGGAAGGAA 60.338 52.381 0.00 0.00 0.00 3.36
955 2056 2.779506 GAAAAGAGCCGAGGAAGGAAA 58.220 47.619 0.00 0.00 0.00 3.13
956 2057 2.951229 AAAGAGCCGAGGAAGGAAAA 57.049 45.000 0.00 0.00 0.00 2.29
1547 3465 2.329339 GCTCCGCCAATCATTCGC 59.671 61.111 0.00 0.00 0.00 4.70
1552 3470 2.715624 GCCAATCATTCGCCGGAC 59.284 61.111 5.05 0.00 0.00 4.79
1571 3493 0.031994 CAAACCAAAACCCTGGCTCG 59.968 55.000 0.00 0.00 40.45 5.03
1575 3497 1.600636 CAAAACCCTGGCTCGCTCA 60.601 57.895 0.00 0.00 0.00 4.26
1579 3501 4.154347 CCCTGGCTCGCTCACTCC 62.154 72.222 0.00 0.00 0.00 3.85
1702 3624 2.021457 CAAATATTTTCCCCGGCGAGT 58.979 47.619 9.30 0.00 0.00 4.18
1715 3637 1.589196 GCGAGTCACGGCAGGATAC 60.589 63.158 0.00 0.00 42.83 2.24
1740 3662 5.560724 AGTATAGGATCTCTCTCAGTGCTC 58.439 45.833 0.00 0.00 0.00 4.26
1796 3718 2.585247 CCCGGGTCTCGCGATTTC 60.585 66.667 14.18 2.77 42.31 2.17
1798 3720 2.585247 CGGGTCTCGCGATTTCCC 60.585 66.667 24.20 24.20 42.31 3.97
1915 3854 1.737008 GGCGTGAAGGTCGGTTCTC 60.737 63.158 0.00 0.00 0.00 2.87
1916 3855 2.087009 GCGTGAAGGTCGGTTCTCG 61.087 63.158 10.93 10.93 43.13 4.04
1917 3856 1.577922 CGTGAAGGTCGGTTCTCGA 59.422 57.895 10.16 0.00 42.99 4.04
2045 3984 7.399245 TGCCATTTTTAATTCCTGTAGTACC 57.601 36.000 0.00 0.00 0.00 3.34
2075 4014 4.051237 GCATTCCAGTTTGTTTCCTGTTC 58.949 43.478 0.00 0.00 0.00 3.18
2113 4052 3.596066 TTGCTCCTCTGCTCGTGGC 62.596 63.158 0.00 0.00 42.22 5.01
2196 4135 7.886338 ACAAAAAGTTATTGGTCTTCATCCTC 58.114 34.615 0.00 0.00 32.02 3.71
2223 4162 2.095532 GCTGCAGAAGTGAGTTGCTATG 59.904 50.000 20.43 0.00 38.60 2.23
2237 4199 0.758123 GCTATGCCCTCTCTGCTTCT 59.242 55.000 0.00 0.00 0.00 2.85
2238 4200 1.140652 GCTATGCCCTCTCTGCTTCTT 59.859 52.381 0.00 0.00 0.00 2.52
2239 4201 2.806382 GCTATGCCCTCTCTGCTTCTTC 60.806 54.545 0.00 0.00 0.00 2.87
2250 4212 5.782047 TCTCTGCTTCTTCTTCTTCTTCTG 58.218 41.667 0.00 0.00 0.00 3.02
2252 4214 4.040217 TCTGCTTCTTCTTCTTCTTCTGCT 59.960 41.667 0.00 0.00 0.00 4.24
2253 4215 4.063689 TGCTTCTTCTTCTTCTTCTGCTG 58.936 43.478 0.00 0.00 0.00 4.41
2264 4226 3.845781 TCTTCTGCTGTTCCAGTTTCT 57.154 42.857 0.00 0.00 33.43 2.52
2283 4245 6.382570 AGTTTCTGTAGCATCTTATCTGAGGT 59.617 38.462 0.00 0.00 0.00 3.85
2297 4259 3.551846 TCTGAGGTTGGTTTCCTGTTTC 58.448 45.455 0.00 0.00 35.20 2.78
2323 4286 0.457035 GGAAGGACACATACGGCGTA 59.543 55.000 23.25 23.25 0.00 4.42
2329 4292 2.223641 GGACACATACGGCGTATTCTCA 60.224 50.000 28.46 4.93 0.00 3.27
2378 4341 4.578928 GTGTTACAGGACTGGATGTTTGTT 59.421 41.667 4.14 0.00 32.01 2.83
2382 4346 4.277476 ACAGGACTGGATGTTTGTTTTCA 58.723 39.130 4.14 0.00 34.19 2.69
2392 4356 6.093219 TGGATGTTTGTTTTCATGGTTTTGTG 59.907 34.615 0.00 0.00 0.00 3.33
2396 4360 6.073003 TGTTTGTTTTCATGGTTTTGTGTTCC 60.073 34.615 0.00 0.00 0.00 3.62
2401 4365 1.115467 ATGGTTTTGTGTTCCCGCAA 58.885 45.000 0.00 0.00 39.23 4.85
2407 4371 1.444119 TTGTGTTCCCGCAAGCTGAC 61.444 55.000 0.00 0.00 36.20 3.51
2591 4555 2.869233 TGCTGTTTGACCTTTTCTGC 57.131 45.000 0.00 0.00 0.00 4.26
2654 4626 5.782893 AGGTCAGCTAGATTAGTCATCAC 57.217 43.478 0.00 0.00 33.75 3.06
2713 4685 3.040147 TCTTTCTAACACAAGGCCTCG 57.960 47.619 5.23 0.00 0.00 4.63
2727 4699 1.261619 GGCCTCGCATTTATGTTCGAG 59.738 52.381 0.00 10.76 45.50 4.04
2766 4738 4.056050 AGTCAGTTACTAAAACTGTGGCG 58.944 43.478 15.37 0.00 45.75 5.69
2832 4804 5.412594 TGGAGTCTTGTATCATGTTTTGCTC 59.587 40.000 0.00 0.00 0.00 4.26
2873 4846 7.820386 CAGATATTCATTCTCTTGGATCCTCTG 59.180 40.741 14.23 8.26 0.00 3.35
2892 4865 2.413453 CTGCAAAGGACTCGAAACTAGC 59.587 50.000 0.00 0.00 0.00 3.42
2915 4888 5.347342 CGCAAATGCATAAATGGAAACCTA 58.653 37.500 0.00 0.00 42.21 3.08
3365 5338 6.354130 AGCAACACAGGTAGAAAGAAAAGTA 58.646 36.000 0.00 0.00 0.00 2.24
3466 5444 8.985315 ATGGAAAGAATGCTCTCATAATTGTA 57.015 30.769 0.00 0.00 31.46 2.41
3588 5566 5.047802 ACCAAGTTCCATTTTCTACTGCATG 60.048 40.000 0.00 0.00 0.00 4.06
3595 5573 9.722056 GTTCCATTTTCTACTGCATGTATAAAG 57.278 33.333 0.00 0.00 31.76 1.85
3857 5835 8.311109 TCTACTTGATGTAATTACTTGTCTGCA 58.689 33.333 16.33 2.19 0.00 4.41
4105 6083 6.601613 TCCTGGGTGTGCTAATACTTAATTTG 59.398 38.462 0.00 0.00 0.00 2.32
4908 6886 1.728672 GGTAGAAGAGAGTCGCCGG 59.271 63.158 0.00 0.00 0.00 6.13
5006 6984 4.772886 AGGTTCTTGTACCAGTTGAGTT 57.227 40.909 0.00 0.00 40.82 3.01
5067 7045 7.095695 TGCCAATATAGTTTTAGGTTTCTGC 57.904 36.000 0.00 0.00 0.00 4.26
5147 7127 0.957395 AGATTGGTGCTCAGTTGCCG 60.957 55.000 0.00 0.00 0.00 5.69
5261 7241 1.956043 TGGAACAGCATTTGGTCGC 59.044 52.632 0.00 0.00 44.87 5.19
5277 7257 1.529948 CGCGGGTGGGTAGGAGATA 60.530 63.158 0.00 0.00 0.00 1.98
5312 7292 1.702401 TCATTTCAGCCACCTGTACCA 59.298 47.619 0.00 0.00 40.09 3.25
5492 7472 0.960364 CAGTACCAAGCCCGCAATGT 60.960 55.000 0.00 0.00 0.00 2.71
5502 7482 1.024046 CCCGCAATGTGGATCGTTGA 61.024 55.000 15.40 0.00 43.50 3.18
5637 7617 5.106277 GGTGCTAACCTTGACTATTGGTTTC 60.106 44.000 1.89 0.00 43.84 2.78
5638 7618 5.705905 GTGCTAACCTTGACTATTGGTTTCT 59.294 40.000 1.89 0.00 43.07 2.52
5639 7619 6.877322 GTGCTAACCTTGACTATTGGTTTCTA 59.123 38.462 1.89 0.00 43.07 2.10
5641 7621 8.107095 TGCTAACCTTGACTATTGGTTTCTATT 58.893 33.333 1.89 0.00 43.07 1.73
5642 7622 8.398665 GCTAACCTTGACTATTGGTTTCTATTG 58.601 37.037 1.89 0.00 43.07 1.90
5643 7623 7.703058 AACCTTGACTATTGGTTTCTATTGG 57.297 36.000 0.00 0.00 40.76 3.16
5644 7624 6.790319 ACCTTGACTATTGGTTTCTATTGGT 58.210 36.000 0.00 0.00 0.00 3.67
5645 7625 7.238710 ACCTTGACTATTGGTTTCTATTGGTT 58.761 34.615 0.00 0.00 0.00 3.67
5646 7626 7.728532 ACCTTGACTATTGGTTTCTATTGGTTT 59.271 33.333 0.00 0.00 0.00 3.27
5647 7627 8.028938 CCTTGACTATTGGTTTCTATTGGTTTG 58.971 37.037 0.00 0.00 0.00 2.93
5648 7628 6.919721 TGACTATTGGTTTCTATTGGTTTGC 58.080 36.000 0.00 0.00 0.00 3.68
5649 7629 6.071616 TGACTATTGGTTTCTATTGGTTTGCC 60.072 38.462 0.00 0.00 0.00 4.52
5650 7630 6.016555 ACTATTGGTTTCTATTGGTTTGCCT 58.983 36.000 0.00 0.00 35.27 4.75
5651 7631 4.864704 TTGGTTTCTATTGGTTTGCCTC 57.135 40.909 0.00 0.00 35.27 4.70
5710 7690 9.469097 AGATTAGTAACTCACTCTTATCACTGT 57.531 33.333 0.00 0.00 38.80 3.55
5788 7768 2.598632 GCAGACGCATATGGCCGAC 61.599 63.158 4.56 1.20 40.31 4.79
5841 7821 3.346315 TGACATTTGGACGCATGATTCT 58.654 40.909 0.00 0.00 0.00 2.40
5895 7875 4.541085 TTGCTGAATCATATTGTGCTCG 57.459 40.909 0.00 0.00 0.00 5.03
5957 7938 2.229784 GGCCTTGTCTCTCCATTGTTTG 59.770 50.000 0.00 0.00 0.00 2.93
5963 7952 6.476706 CCTTGTCTCTCCATTGTTTGTTTTTC 59.523 38.462 0.00 0.00 0.00 2.29
5966 7955 7.610865 TGTCTCTCCATTGTTTGTTTTTCTTT 58.389 30.769 0.00 0.00 0.00 2.52
6130 8126 3.139397 TGTTGTAGAAACCACAGGGGAAT 59.861 43.478 0.00 0.00 41.15 3.01
6183 8179 1.550327 TTGTTGCCACAGTTGGTCAA 58.450 45.000 0.00 0.00 45.98 3.18
6184 8180 1.774110 TGTTGCCACAGTTGGTCAAT 58.226 45.000 0.00 0.00 45.98 2.57
6185 8181 1.680735 TGTTGCCACAGTTGGTCAATC 59.319 47.619 0.00 1.53 45.98 2.67
6207 8203 9.159470 CAATCGTCTGTCTAAAGAAAAGAAAAC 57.841 33.333 0.00 0.00 0.00 2.43
6208 8204 8.664211 ATCGTCTGTCTAAAGAAAAGAAAACT 57.336 30.769 0.00 0.00 0.00 2.66
6209 8205 8.488651 TCGTCTGTCTAAAGAAAAGAAAACTT 57.511 30.769 0.00 0.00 0.00 2.66
6244 8323 5.880901 ACAAACTCTCAGGTTGGTGATATT 58.119 37.500 6.27 0.00 46.83 1.28
6245 8324 6.306987 ACAAACTCTCAGGTTGGTGATATTT 58.693 36.000 6.27 0.00 46.83 1.40
6247 8326 6.824305 AACTCTCAGGTTGGTGATATTTTG 57.176 37.500 0.00 0.00 0.00 2.44
6256 8335 5.988561 GGTTGGTGATATTTTGCACTTTCAA 59.011 36.000 0.00 0.00 35.43 2.69
6268 8347 5.902613 TGCACTTTCAATCTGAAATAGGG 57.097 39.130 2.48 0.00 44.37 3.53
6270 8349 5.415701 TGCACTTTCAATCTGAAATAGGGTC 59.584 40.000 2.48 0.00 44.37 4.46
6287 8366 1.741706 GGTCACACATGCAGAGATTGG 59.258 52.381 0.00 0.00 0.00 3.16
6290 8369 4.194640 GTCACACATGCAGAGATTGGTAT 58.805 43.478 0.00 0.00 0.00 2.73
6299 8378 4.409901 TGCAGAGATTGGTATGATCTTCCA 59.590 41.667 0.00 0.00 34.13 3.53
6364 8443 1.069022 CAGCCTGAAATTGGTCACACG 60.069 52.381 0.00 0.00 0.00 4.49
6387 8466 1.815003 GAGAGTCATGGCTTGTTTGGG 59.185 52.381 0.00 0.00 0.00 4.12
6388 8467 0.244721 GAGTCATGGCTTGTTTGGGC 59.755 55.000 0.00 0.00 0.00 5.36
6389 8468 0.469705 AGTCATGGCTTGTTTGGGCA 60.470 50.000 0.00 0.00 43.10 5.36
6390 8469 0.319813 GTCATGGCTTGTTTGGGCAC 60.320 55.000 0.00 0.00 41.82 5.01
6391 8470 0.758310 TCATGGCTTGTTTGGGCACA 60.758 50.000 0.00 0.00 41.82 4.57
6392 8471 0.320073 CATGGCTTGTTTGGGCACAG 60.320 55.000 0.00 0.00 41.82 3.66
6440 8522 4.380761 GCATGTTCAACCTGTCATATGCAA 60.381 41.667 0.00 0.00 39.41 4.08
6502 8591 5.958380 TGATAGGTCAAGATACAAGTCAGGT 59.042 40.000 0.00 0.00 0.00 4.00
6505 8594 4.712337 AGGTCAAGATACAAGTCAGGTAGG 59.288 45.833 0.00 0.00 0.00 3.18
6526 8615 6.096673 AGGCACCGACAAAAATAAAAAGAT 57.903 33.333 0.00 0.00 0.00 2.40
6530 8619 7.597369 GGCACCGACAAAAATAAAAAGATAACT 59.403 33.333 0.00 0.00 0.00 2.24
6570 8660 1.975680 AGGACCGCCAGTTAAGAAGAA 59.024 47.619 0.00 0.00 36.29 2.52
6573 8663 3.566742 GGACCGCCAGTTAAGAAGAAAAA 59.433 43.478 0.00 0.00 0.00 1.94
6581 8671 8.850452 CGCCAGTTAAGAAGAAAAATTACAATC 58.150 33.333 0.00 0.00 0.00 2.67
6598 8688 9.981114 AATTACAATCAAAACCGAAAAATCTCT 57.019 25.926 0.00 0.00 0.00 3.10
6599 8689 8.795786 TTACAATCAAAACCGAAAAATCTCTG 57.204 30.769 0.00 0.00 0.00 3.35
6678 8768 9.489084 GCAAAAATTCTAAACTTATGGAAGGTT 57.511 29.630 0.00 0.00 44.92 3.50
6681 8771 9.489084 AAAATTCTAAACTTATGGAAGGTTTGC 57.511 29.630 0.00 0.00 39.72 3.68
6682 8772 8.422577 AATTCTAAACTTATGGAAGGTTTGCT 57.577 30.769 0.00 0.00 39.72 3.91
6683 8773 7.833285 TTCTAAACTTATGGAAGGTTTGCTT 57.167 32.000 0.00 0.00 39.72 3.91
6684 8774 7.833285 TCTAAACTTATGGAAGGTTTGCTTT 57.167 32.000 0.00 0.00 39.72 3.51
6685 8775 7.657336 TCTAAACTTATGGAAGGTTTGCTTTG 58.343 34.615 0.00 0.00 39.72 2.77
6686 8776 4.257267 ACTTATGGAAGGTTTGCTTTGC 57.743 40.909 0.00 0.00 36.95 3.68
6687 8777 3.640967 ACTTATGGAAGGTTTGCTTTGCA 59.359 39.130 0.00 0.00 36.58 4.08
6688 8778 2.825861 ATGGAAGGTTTGCTTTGCAG 57.174 45.000 0.00 0.00 40.61 4.41
6689 8779 1.774110 TGGAAGGTTTGCTTTGCAGA 58.226 45.000 0.00 0.00 40.61 4.26
6690 8780 1.408702 TGGAAGGTTTGCTTTGCAGAC 59.591 47.619 4.89 4.89 41.91 3.51
6691 8781 1.408702 GGAAGGTTTGCTTTGCAGACA 59.591 47.619 13.68 0.00 43.96 3.41
6704 8794 1.553248 TGCAGACAAACCTATAGGCGT 59.447 47.619 19.25 13.25 39.32 5.68
6705 8795 2.202566 GCAGACAAACCTATAGGCGTC 58.797 52.381 19.25 20.35 39.32 5.19
6717 8807 2.203800 TAGGCGTCGATGTCACATTC 57.796 50.000 12.54 0.00 0.00 2.67
6719 8809 0.460284 GGCGTCGATGTCACATTCCT 60.460 55.000 3.88 0.00 0.00 3.36
6722 8812 1.737029 CGTCGATGTCACATTCCTGCT 60.737 52.381 0.00 0.00 0.00 4.24
6724 8814 2.349886 GTCGATGTCACATTCCTGCTTC 59.650 50.000 0.00 0.00 0.00 3.86
6725 8815 2.234661 TCGATGTCACATTCCTGCTTCT 59.765 45.455 0.00 0.00 0.00 2.85
6726 8816 3.005554 CGATGTCACATTCCTGCTTCTT 58.994 45.455 0.00 0.00 0.00 2.52
6727 8817 3.063180 CGATGTCACATTCCTGCTTCTTC 59.937 47.826 0.00 0.00 0.00 2.87
6733 8823 6.545666 TGTCACATTCCTGCTTCTTCTTTTTA 59.454 34.615 0.00 0.00 0.00 1.52
6736 8826 8.730680 TCACATTCCTGCTTCTTCTTTTTATAC 58.269 33.333 0.00 0.00 0.00 1.47
6746 8836 8.064814 GCTTCTTCTTTTTATACAGAATAGGCG 58.935 37.037 0.00 0.00 0.00 5.52
6756 8846 1.134401 CAGAATAGGCGCCCAAAGAGA 60.134 52.381 26.15 0.00 0.00 3.10
6757 8847 1.771255 AGAATAGGCGCCCAAAGAGAT 59.229 47.619 26.15 3.86 0.00 2.75
6758 8848 2.147150 GAATAGGCGCCCAAAGAGATC 58.853 52.381 26.15 6.81 0.00 2.75
6759 8849 1.428869 ATAGGCGCCCAAAGAGATCT 58.571 50.000 26.15 2.07 0.00 2.75
6760 8850 0.753262 TAGGCGCCCAAAGAGATCTC 59.247 55.000 26.15 15.29 0.00 2.75
6761 8851 1.221840 GGCGCCCAAAGAGATCTCA 59.778 57.895 24.39 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.473520 CCGCCACCGCTCCATCTT 62.474 66.667 0.00 0.00 0.00 2.40
55 56 5.416952 CCCTTTCTTTGTGACATTGCTCTAT 59.583 40.000 0.00 0.00 0.00 1.98
106 107 1.437160 CCCTCTTGCTCGCTCTCTC 59.563 63.158 0.00 0.00 0.00 3.20
142 143 0.529378 CCGTGCTAAACCCTAGTCGT 59.471 55.000 0.00 0.00 0.00 4.34
192 193 0.108963 CCACCGGGGTAGTTTTGTCA 59.891 55.000 6.32 0.00 0.00 3.58
260 261 4.403432 TCGGATATTTACCAGGTCGTTCTT 59.597 41.667 0.00 0.00 0.00 2.52
268 269 1.343465 AGCCGTCGGATATTTACCAGG 59.657 52.381 17.49 0.00 0.00 4.45
331 332 5.521906 TTTGGGTCGTTTGATTGAAATCA 57.478 34.783 1.55 1.55 43.28 2.57
352 353 1.379843 CCCTAGCCGCCACCAATTT 60.380 57.895 0.00 0.00 0.00 1.82
426 427 1.684869 CGTAAATTCCATGCCCCCACT 60.685 52.381 0.00 0.00 0.00 4.00
471 906 1.268899 CCAGGTCGTTCTTAGTCGTGT 59.731 52.381 0.00 0.00 0.00 4.49
472 907 1.268899 ACCAGGTCGTTCTTAGTCGTG 59.731 52.381 0.00 0.00 0.00 4.35
477 912 5.919141 CGGATATTTACCAGGTCGTTCTTAG 59.081 44.000 0.00 0.00 0.00 2.18
479 914 4.403432 TCGGATATTTACCAGGTCGTTCTT 59.597 41.667 0.00 0.00 0.00 2.52
487 922 1.343465 AGCCGTCGGATATTTACCAGG 59.657 52.381 17.49 0.00 0.00 4.45
505 940 1.520342 GGGCTGATCTCGTGTGAGC 60.520 63.158 0.00 0.00 42.26 4.26
556 991 2.095853 CCAATTCTGGGTCGTTCGATTG 59.904 50.000 0.00 0.00 39.30 2.67
557 992 2.356135 CCAATTCTGGGTCGTTCGATT 58.644 47.619 0.00 0.00 39.30 3.34
604 1039 4.478206 TGAGACATAAAGAAGGCAGGAG 57.522 45.455 0.00 0.00 0.00 3.69
606 1041 5.964958 TTTTGAGACATAAAGAAGGCAGG 57.035 39.130 0.00 0.00 0.00 4.85
646 1081 5.603813 CCCTTTCATAAATTCCATGTCCCAT 59.396 40.000 0.00 0.00 0.00 4.00
651 1086 7.673926 AGTTGTACCCTTTCATAAATTCCATGT 59.326 33.333 0.00 0.00 0.00 3.21
663 1318 8.293867 CGATAAAATTTCAGTTGTACCCTTTCA 58.706 33.333 0.00 0.00 0.00 2.69
672 1327 5.699458 AGTCGTCCGATAAAATTTCAGTTGT 59.301 36.000 0.00 0.00 0.00 3.32
849 1944 4.629115 GTGCGCTGCGGTTTTGCT 62.629 61.111 24.61 0.00 35.36 3.91
936 2037 2.951229 TTTCCTTCCTCGGCTCTTTT 57.049 45.000 0.00 0.00 0.00 2.27
937 2038 2.951229 TTTTCCTTCCTCGGCTCTTT 57.049 45.000 0.00 0.00 0.00 2.52
938 2039 2.951229 TTTTTCCTTCCTCGGCTCTT 57.049 45.000 0.00 0.00 0.00 2.85
1547 3465 0.387565 CAGGGTTTTGGTTTGTCCGG 59.612 55.000 0.00 0.00 39.52 5.14
1552 3470 0.031994 CGAGCCAGGGTTTTGGTTTG 59.968 55.000 0.00 0.00 40.49 2.93
1571 3493 4.863925 GCGAGCGAGGGAGTGAGC 62.864 72.222 0.00 0.00 0.00 4.26
1575 3497 3.532155 GGATGCGAGCGAGGGAGT 61.532 66.667 0.00 0.00 0.00 3.85
1594 3516 2.027460 GGCGCCAATTATTGCCGG 59.973 61.111 24.80 0.00 37.81 6.13
1702 3624 3.572682 CCTATACTTGTATCCTGCCGTGA 59.427 47.826 0.00 0.00 0.00 4.35
1715 3637 5.769662 AGCACTGAGAGAGATCCTATACTTG 59.230 44.000 0.00 0.00 0.00 3.16
1798 3720 1.075374 TCCACACAGAAATCCTTGGGG 59.925 52.381 0.00 0.00 0.00 4.96
2075 4014 8.545420 GGAGCAACAATCAGCATTAATTAATTG 58.455 33.333 11.05 5.85 0.00 2.32
2113 4052 4.873817 TCTGTGCAAATGAACAAATCCAG 58.126 39.130 0.00 0.00 32.17 3.86
2196 4135 1.135915 ACTCACTTCTGCAGCCTATCG 59.864 52.381 9.47 0.00 0.00 2.92
2223 4162 1.554617 AGAAGAAGAAGCAGAGAGGGC 59.445 52.381 0.00 0.00 0.00 5.19
2237 4199 4.422073 TGGAACAGCAGAAGAAGAAGAA 57.578 40.909 0.00 0.00 0.00 2.52
2252 4214 4.623932 AGATGCTACAGAAACTGGAACA 57.376 40.909 0.00 0.00 35.51 3.18
2253 4215 7.010923 CAGATAAGATGCTACAGAAACTGGAAC 59.989 40.741 0.00 0.00 35.51 3.62
2264 4226 4.716784 ACCAACCTCAGATAAGATGCTACA 59.283 41.667 0.00 0.00 0.00 2.74
2283 4245 0.383949 GCGCAGAAACAGGAAACCAA 59.616 50.000 0.30 0.00 0.00 3.67
2297 4259 0.108186 TATGTGTCCTTCCTGCGCAG 60.108 55.000 30.52 30.52 0.00 5.18
2323 4286 1.833630 TCATCAACCGGCTCTGAGAAT 59.166 47.619 9.28 0.00 0.00 2.40
2329 4292 1.833630 TCTTCATCATCAACCGGCTCT 59.166 47.619 0.00 0.00 0.00 4.09
2378 4341 2.482142 GCGGGAACACAAAACCATGAAA 60.482 45.455 0.00 0.00 0.00 2.69
2382 4346 1.068434 CTTGCGGGAACACAAAACCAT 59.932 47.619 0.00 0.00 0.00 3.55
2392 4356 0.674895 ATCAGTCAGCTTGCGGGAAC 60.675 55.000 0.00 0.00 0.00 3.62
2396 4360 0.455633 GCAAATCAGTCAGCTTGCGG 60.456 55.000 0.00 0.00 35.30 5.69
2401 4365 2.854963 TCACAAGCAAATCAGTCAGCT 58.145 42.857 0.00 0.00 39.37 4.24
2407 4371 3.306917 TGGCAATCACAAGCAAATCAG 57.693 42.857 0.00 0.00 0.00 2.90
2524 4488 1.888512 GCTGACCTCAAATTGCTCCAA 59.111 47.619 0.00 0.00 0.00 3.53
2591 4555 4.678509 TTGCGGTAACAGCTGATTAAAG 57.321 40.909 23.35 12.48 37.09 1.85
2798 4770 2.949447 ACAAGACTCCAAAGGCAACAT 58.051 42.857 0.00 0.00 41.41 2.71
2832 4804 5.588648 TGAATATCTGTTCCTAAAAAGGCGG 59.411 40.000 0.00 0.00 0.00 6.13
2873 4846 1.390463 CGCTAGTTTCGAGTCCTTTGC 59.610 52.381 0.00 0.00 0.00 3.68
2892 4865 4.183101 AGGTTTCCATTTATGCATTTGCG 58.817 39.130 3.54 0.00 45.83 4.85
2915 4888 9.952188 GAAACACTATTTAGAAGCAAAACTCTT 57.048 29.630 0.00 0.00 0.00 2.85
3221 5194 0.877071 CAGAAAGACAACGGCAGCAT 59.123 50.000 0.00 0.00 0.00 3.79
3394 5372 4.286297 TGCCTGTCTAACAAGCACTTAT 57.714 40.909 0.00 0.00 40.30 1.73
3395 5373 3.762407 TGCCTGTCTAACAAGCACTTA 57.238 42.857 0.00 0.00 40.30 2.24
3566 5544 6.017400 ACATGCAGTAGAAAATGGAACTTG 57.983 37.500 0.00 0.00 0.00 3.16
3588 5566 6.018669 GCAGTGCCTGTACAAGATCTTTATAC 60.019 42.308 4.86 11.77 33.43 1.47
3595 5573 2.393271 AGCAGTGCCTGTACAAGATC 57.607 50.000 12.58 0.00 33.43 2.75
3808 5786 1.630369 TGGTGGCACAGAGAGCTTAAT 59.370 47.619 20.82 0.00 41.80 1.40
3857 5835 3.445008 TCAAGTGATTAGAGAGGTGGCT 58.555 45.455 0.00 0.00 0.00 4.75
5006 6984 2.307686 GGGGAGGTGACTTGTATTGGAA 59.692 50.000 0.00 0.00 44.43 3.53
5250 7230 4.114997 CCACCCGCGACCAAATGC 62.115 66.667 8.23 0.00 0.00 3.56
5261 7241 1.524863 CGCTATCTCCTACCCACCCG 61.525 65.000 0.00 0.00 0.00 5.28
5277 7257 3.820467 TGAAATGAGTTTGGTGATTCGCT 59.180 39.130 0.00 0.00 0.00 4.93
5312 7292 4.504858 GTGTTGGTATCGGAGATGAAGTT 58.495 43.478 0.00 0.00 45.12 2.66
5492 7472 0.669318 GAACCTGCGTCAACGATCCA 60.669 55.000 6.75 0.00 43.02 3.41
5502 7482 1.874345 CGGTCTACTGGAACCTGCGT 61.874 60.000 0.00 0.00 0.00 5.24
5637 7617 6.817765 TGTAGAAAAGAGGCAAACCAATAG 57.182 37.500 0.00 0.00 39.06 1.73
5638 7618 6.377146 GGATGTAGAAAAGAGGCAAACCAATA 59.623 38.462 0.00 0.00 39.06 1.90
5639 7619 5.185828 GGATGTAGAAAAGAGGCAAACCAAT 59.814 40.000 0.00 0.00 39.06 3.16
5641 7621 4.079253 GGATGTAGAAAAGAGGCAAACCA 58.921 43.478 0.00 0.00 39.06 3.67
5642 7622 3.444034 GGGATGTAGAAAAGAGGCAAACC 59.556 47.826 0.00 0.00 0.00 3.27
5643 7623 3.444034 GGGGATGTAGAAAAGAGGCAAAC 59.556 47.826 0.00 0.00 0.00 2.93
5644 7624 3.333680 AGGGGATGTAGAAAAGAGGCAAA 59.666 43.478 0.00 0.00 0.00 3.68
5645 7625 2.919602 AGGGGATGTAGAAAAGAGGCAA 59.080 45.455 0.00 0.00 0.00 4.52
5646 7626 2.239654 CAGGGGATGTAGAAAAGAGGCA 59.760 50.000 0.00 0.00 0.00 4.75
5647 7627 2.239907 ACAGGGGATGTAGAAAAGAGGC 59.760 50.000 0.00 0.00 41.60 4.70
5648 7628 4.518249 GAACAGGGGATGTAGAAAAGAGG 58.482 47.826 0.00 0.00 43.00 3.69
5649 7629 4.226168 AGGAACAGGGGATGTAGAAAAGAG 59.774 45.833 0.00 0.00 43.00 2.85
5650 7630 4.175962 AGGAACAGGGGATGTAGAAAAGA 58.824 43.478 0.00 0.00 43.00 2.52
5651 7631 4.576330 AGGAACAGGGGATGTAGAAAAG 57.424 45.455 0.00 0.00 43.00 2.27
5707 7687 1.338020 GACCCTGCAAAGACCAAACAG 59.662 52.381 0.00 0.00 0.00 3.16
5710 7690 2.151502 TTGACCCTGCAAAGACCAAA 57.848 45.000 0.00 0.00 0.00 3.28
5788 7768 2.034053 GTCGAGCTTGGGTCTCTATCAG 59.966 54.545 0.00 0.00 0.00 2.90
5957 7938 7.379098 AGATACCCATTCTCGAAAGAAAAAC 57.621 36.000 0.00 0.00 44.49 2.43
5963 7952 4.672587 TGGAGATACCCATTCTCGAAAG 57.327 45.455 0.00 0.00 40.46 2.62
6183 8179 8.664211 AGTTTTCTTTTCTTTAGACAGACGAT 57.336 30.769 0.00 0.00 0.00 3.73
6184 8180 8.488651 AAGTTTTCTTTTCTTTAGACAGACGA 57.511 30.769 0.00 0.00 36.67 4.20
6207 8203 9.185192 CCTGAGAGTTTGTTAGCAAATTAAAAG 57.815 33.333 8.05 4.54 45.11 2.27
6208 8204 8.691797 ACCTGAGAGTTTGTTAGCAAATTAAAA 58.308 29.630 8.05 0.00 45.11 1.52
6209 8205 8.232913 ACCTGAGAGTTTGTTAGCAAATTAAA 57.767 30.769 8.05 0.00 45.11 1.52
6228 8307 4.460382 AGTGCAAAATATCACCAACCTGAG 59.540 41.667 0.00 0.00 33.90 3.35
6256 8335 4.202441 GCATGTGTGACCCTATTTCAGAT 58.798 43.478 0.00 0.00 0.00 2.90
6268 8347 2.430465 ACCAATCTCTGCATGTGTGAC 58.570 47.619 0.00 0.00 0.00 3.67
6270 8349 4.193865 TCATACCAATCTCTGCATGTGTG 58.806 43.478 0.00 0.00 0.00 3.82
6287 8366 5.409826 CCGATTTTAGCCTGGAAGATCATAC 59.590 44.000 0.00 0.00 34.07 2.39
6290 8369 3.199946 ACCGATTTTAGCCTGGAAGATCA 59.800 43.478 0.00 0.00 34.07 2.92
6299 8378 2.851263 TGTGTGACCGATTTTAGCCT 57.149 45.000 0.00 0.00 0.00 4.58
6364 8443 2.191128 AACAAGCCATGACTCTCCAC 57.809 50.000 0.00 0.00 0.00 4.02
6387 8466 5.424121 ACATTCTAAAACAGTGTCTGTGC 57.576 39.130 0.00 0.00 44.62 4.57
6388 8467 7.251704 AGAACATTCTAAAACAGTGTCTGTG 57.748 36.000 0.00 0.00 38.66 3.66
6389 8468 7.171678 GCTAGAACATTCTAAAACAGTGTCTGT 59.828 37.037 0.00 0.00 41.57 3.41
6390 8469 7.171508 TGCTAGAACATTCTAAAACAGTGTCTG 59.828 37.037 0.00 0.00 39.15 3.51
6391 8470 7.217200 TGCTAGAACATTCTAAAACAGTGTCT 58.783 34.615 0.00 0.00 39.15 3.41
6392 8471 7.421530 TGCTAGAACATTCTAAAACAGTGTC 57.578 36.000 0.00 0.00 39.15 3.67
6502 8591 6.636562 TCTTTTTATTTTTGTCGGTGCCTA 57.363 33.333 0.00 0.00 0.00 3.93
6505 8594 8.424731 CAGTTATCTTTTTATTTTTGTCGGTGC 58.575 33.333 0.00 0.00 0.00 5.01
6526 8615 5.222079 TGTGCAAGGTTAGTGATCAGTTA 57.778 39.130 8.68 0.00 0.00 2.24
6530 8619 3.820467 CCTTTGTGCAAGGTTAGTGATCA 59.180 43.478 0.00 0.00 46.72 2.92
6556 8646 9.691362 TGATTGTAATTTTTCTTCTTAACTGGC 57.309 29.630 0.00 0.00 0.00 4.85
6573 8663 9.410556 CAGAGATTTTTCGGTTTTGATTGTAAT 57.589 29.630 0.00 0.00 0.00 1.89
6581 8671 5.831997 ACCTTCAGAGATTTTTCGGTTTTG 58.168 37.500 0.00 0.00 0.00 2.44
6588 8678 6.625873 AGTGTCAACCTTCAGAGATTTTTC 57.374 37.500 0.00 0.00 0.00 2.29
6591 8681 5.440610 ACAAGTGTCAACCTTCAGAGATTT 58.559 37.500 0.00 0.00 0.00 2.17
6681 8771 3.063997 CGCCTATAGGTTTGTCTGCAAAG 59.936 47.826 20.10 0.00 44.27 2.77
6682 8772 3.006940 CGCCTATAGGTTTGTCTGCAAA 58.993 45.455 20.10 0.00 37.69 3.68
6683 8773 2.027561 ACGCCTATAGGTTTGTCTGCAA 60.028 45.455 20.10 0.00 37.57 4.08
6684 8774 1.553248 ACGCCTATAGGTTTGTCTGCA 59.447 47.619 20.10 0.00 37.57 4.41
6685 8775 2.202566 GACGCCTATAGGTTTGTCTGC 58.797 52.381 20.10 2.19 37.57 4.26
6686 8776 2.098607 TCGACGCCTATAGGTTTGTCTG 59.901 50.000 25.22 20.71 37.57 3.51
6687 8777 2.372264 TCGACGCCTATAGGTTTGTCT 58.628 47.619 25.22 5.86 37.57 3.41
6688 8778 2.857592 TCGACGCCTATAGGTTTGTC 57.142 50.000 20.10 20.94 37.57 3.18
6689 8779 2.429610 ACATCGACGCCTATAGGTTTGT 59.570 45.455 20.10 15.43 37.57 2.83
6690 8780 3.050619 GACATCGACGCCTATAGGTTTG 58.949 50.000 20.10 12.49 37.57 2.93
6691 8781 2.691526 TGACATCGACGCCTATAGGTTT 59.308 45.455 20.10 7.29 37.57 3.27
6704 8794 2.234661 AGAAGCAGGAATGTGACATCGA 59.765 45.455 0.00 0.00 0.00 3.59
6705 8795 2.625737 AGAAGCAGGAATGTGACATCG 58.374 47.619 0.00 0.00 0.00 3.84
6719 8809 8.893727 GCCTATTCTGTATAAAAAGAAGAAGCA 58.106 33.333 0.00 0.00 35.95 3.91
6722 8812 7.012044 GGCGCCTATTCTGTATAAAAAGAAGAA 59.988 37.037 22.15 0.00 35.95 2.52
6724 8814 6.293462 GGGCGCCTATTCTGTATAAAAAGAAG 60.293 42.308 28.56 0.00 35.95 2.85
6725 8815 5.529800 GGGCGCCTATTCTGTATAAAAAGAA 59.470 40.000 28.56 0.00 36.87 2.52
6726 8816 5.061179 GGGCGCCTATTCTGTATAAAAAGA 58.939 41.667 28.56 0.00 0.00 2.52
6727 8817 4.819630 TGGGCGCCTATTCTGTATAAAAAG 59.180 41.667 28.56 0.00 0.00 2.27
6733 8823 2.438021 TCTTTGGGCGCCTATTCTGTAT 59.562 45.455 28.56 0.00 0.00 2.29
6736 8826 1.134401 TCTCTTTGGGCGCCTATTCTG 60.134 52.381 28.56 13.12 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.