Multiple sequence alignment - TraesCS5D01G355900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G355900 chr5D 100.000 6508 0 0 1 6508 437340555 437347062 0.000000e+00 12019
1 TraesCS5D01G355900 chr5B 95.924 6550 172 32 1 6507 531536909 531543406 0.000000e+00 10528
2 TraesCS5D01G355900 chr5B 82.194 556 95 4 2930 3483 668521176 668520623 5.900000e-130 475
3 TraesCS5D01G355900 chr5B 83.777 413 67 0 1594 2006 668828288 668827876 6.120000e-105 392
4 TraesCS5D01G355900 chr5A 96.606 3771 111 11 2747 6507 552524175 552527938 0.000000e+00 6239
5 TraesCS5D01G355900 chr5A 88.550 2655 192 48 1 2586 552521565 552524176 0.000000e+00 3116


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G355900 chr5D 437340555 437347062 6507 False 12019.0 12019 100.000 1 6508 1 chr5D.!!$F1 6507
1 TraesCS5D01G355900 chr5B 531536909 531543406 6497 False 10528.0 10528 95.924 1 6507 1 chr5B.!!$F1 6506
2 TraesCS5D01G355900 chr5B 668520623 668521176 553 True 475.0 475 82.194 2930 3483 1 chr5B.!!$R1 553
3 TraesCS5D01G355900 chr5A 552521565 552527938 6373 False 4677.5 6239 92.578 1 6507 2 chr5A.!!$F1 6506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 927 0.692756 GAGGGGAGGGAAGGGAAGAG 60.693 65.000 0.00 0.0 0.00 2.85 F
2572 2654 1.531840 GAGGCGGCCTCCTGAGATA 60.532 63.158 34.02 0.0 44.36 1.98 F
2593 2675 0.028505 CTCATTGGCTTGCCGATTCG 59.971 55.000 11.45 0.0 0.00 3.34 F
3549 3632 0.106819 AGGAGGCATCATGGACAAGC 60.107 55.000 0.00 0.0 0.00 4.01 F
4906 4992 0.250124 CACCGACACCACAGGCTAAA 60.250 55.000 0.00 0.0 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2590 2672 0.320374 ACTTGGCTCGATTCACCGAA 59.680 50.000 0.00 0.0 38.17 4.30 R
3385 3468 0.672342 ACACGTAGAGTTCGGCAAGT 59.328 50.000 0.00 0.0 0.00 3.16 R
4582 4668 1.683943 CATGTATCCACCCAAGCTGG 58.316 55.000 0.00 0.0 37.25 4.85 R
5156 5242 0.740868 TTCGAGAAGAATGCTGCCCG 60.741 55.000 0.00 0.0 33.14 6.13 R
6126 6232 1.269998 AGACAGTTCTGTGGTACGAGC 59.730 52.381 10.29 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 5.375283 GGAGCCTTCCTTAGTTTATCCTT 57.625 43.478 0.00 0.00 40.58 3.36
233 234 1.732259 CGGCTTGACGCAATTAGTTCT 59.268 47.619 0.00 0.00 41.67 3.01
366 367 3.008594 ACATATCAGGGAAAACACGTCCA 59.991 43.478 0.00 0.00 36.83 4.02
427 428 4.217550 ACCCAATAAACACAACTTCCATCG 59.782 41.667 0.00 0.00 0.00 3.84
431 432 7.364200 CCAATAAACACAACTTCCATCGTTTA 58.636 34.615 0.00 0.00 34.43 2.01
539 541 0.893727 ACTTTAACAAGGCAGCGGGG 60.894 55.000 0.00 0.00 33.82 5.73
557 559 2.509964 GGGGATAGTTGGATTCCTGTGT 59.490 50.000 3.95 0.00 0.00 3.72
879 889 4.527583 GAGGAGGCCAGCGCAGAG 62.528 72.222 11.47 0.00 36.38 3.35
911 921 2.040359 GAGGGAGGGGAGGGAAGG 60.040 72.222 0.00 0.00 0.00 3.46
912 922 3.711782 AGGGAGGGGAGGGAAGGG 61.712 72.222 0.00 0.00 0.00 3.95
913 923 3.707189 GGGAGGGGAGGGAAGGGA 61.707 72.222 0.00 0.00 0.00 4.20
914 924 2.459710 GGAGGGGAGGGAAGGGAA 59.540 66.667 0.00 0.00 0.00 3.97
915 925 1.694525 GGAGGGGAGGGAAGGGAAG 60.695 68.421 0.00 0.00 0.00 3.46
916 926 1.396594 GAGGGGAGGGAAGGGAAGA 59.603 63.158 0.00 0.00 0.00 2.87
917 927 0.692756 GAGGGGAGGGAAGGGAAGAG 60.693 65.000 0.00 0.00 0.00 2.85
953 963 3.181475 ACCATACGATTACCAGTGAGCAG 60.181 47.826 0.00 0.00 0.00 4.24
1087 1097 1.948243 AGATCTTCCCTAGACCCCCTT 59.052 52.381 0.00 0.00 35.19 3.95
1195 1209 3.701040 TGCTTTCAATTCCAAGGCTATCC 59.299 43.478 0.00 0.00 0.00 2.59
1297 1311 3.933861 AGCTTTACCTGTATGGAAGGG 57.066 47.619 0.00 0.00 39.30 3.95
1300 1314 2.974285 TTACCTGTATGGAAGGGGGA 57.026 50.000 0.00 0.00 39.30 4.81
1719 1736 2.742710 TTCAGGGAAGTGTCGACGCG 62.743 60.000 22.41 3.53 0.00 6.01
2140 2185 6.886459 TCATGTTCTTTTCCCTAGATTTGAGG 59.114 38.462 0.00 0.00 0.00 3.86
2152 2197 6.547510 CCCTAGATTTGAGGTTTCTTAATGGG 59.452 42.308 0.00 0.00 31.52 4.00
2294 2348 6.987992 TGAACCTTTAATATCCACATACGGAC 59.012 38.462 0.00 0.00 38.07 4.79
2295 2349 6.488769 ACCTTTAATATCCACATACGGACA 57.511 37.500 0.00 0.00 38.07 4.02
2296 2350 7.074653 ACCTTTAATATCCACATACGGACAT 57.925 36.000 0.00 0.00 38.07 3.06
2297 2351 8.197592 ACCTTTAATATCCACATACGGACATA 57.802 34.615 0.00 0.00 38.07 2.29
2298 2352 8.092687 ACCTTTAATATCCACATACGGACATAC 58.907 37.037 0.00 0.00 38.07 2.39
2326 2380 4.082125 CAGTGAAAGCATTTACCCCTCTT 58.918 43.478 0.00 0.00 39.27 2.85
2327 2381 5.253330 CAGTGAAAGCATTTACCCCTCTTA 58.747 41.667 0.00 0.00 39.27 2.10
2328 2382 5.888161 CAGTGAAAGCATTTACCCCTCTTAT 59.112 40.000 0.00 0.00 39.27 1.73
2329 2383 6.378280 CAGTGAAAGCATTTACCCCTCTTATT 59.622 38.462 0.00 0.00 39.27 1.40
2330 2384 6.954102 AGTGAAAGCATTTACCCCTCTTATTT 59.046 34.615 0.00 0.00 39.27 1.40
2337 2391 8.914011 AGCATTTACCCCTCTTATTTATGAAAC 58.086 33.333 0.00 0.00 0.00 2.78
2473 2555 4.399934 GGATAACCAAATAAAGCGACCCAA 59.600 41.667 0.00 0.00 35.97 4.12
2572 2654 1.531840 GAGGCGGCCTCCTGAGATA 60.532 63.158 34.02 0.00 44.36 1.98
2587 2669 1.878734 GAGATAGCTCATTGGCTTGCC 59.121 52.381 2.36 4.43 42.97 4.52
2590 2672 0.181114 TAGCTCATTGGCTTGCCGAT 59.819 50.000 8.50 8.50 42.97 4.18
2593 2675 0.028505 CTCATTGGCTTGCCGATTCG 59.971 55.000 11.45 0.00 0.00 3.34
2619 2701 0.389817 CGAGCCAAGTCGGATGAACA 60.390 55.000 0.00 0.00 36.26 3.18
2621 2703 1.734465 GAGCCAAGTCGGATGAACAAG 59.266 52.381 0.00 0.00 36.56 3.16
2676 2758 4.526970 TGATCTTCAATGTTAAGGCCTCC 58.473 43.478 5.23 0.00 0.00 4.30
2742 2824 3.056322 GCAATTTCATGAAAGCAGAGGGT 60.056 43.478 24.17 4.11 33.32 4.34
2985 3068 0.392193 CTCAGACCTGGGTCACATGC 60.392 60.000 20.16 0.00 46.76 4.06
2996 3079 0.867746 GTCACATGCGCTCAACAAGA 59.132 50.000 9.73 0.00 0.00 3.02
3129 3212 1.961277 CCACCACCTTCTGCGTGAC 60.961 63.158 0.00 0.00 32.77 3.67
3155 3238 0.600057 GTTGCAGGGAAAGCCTTCAG 59.400 55.000 0.00 0.00 32.75 3.02
3385 3468 2.436469 CAGGCACCATGCGCAGTA 60.436 61.111 18.32 0.00 46.21 2.74
3414 3497 4.379186 CGAACTCTACGTGTGGTTACAGAT 60.379 45.833 0.00 0.00 37.52 2.90
3433 3516 3.407540 AGATAAGGAGATGGGGGATGAGA 59.592 47.826 0.00 0.00 0.00 3.27
3549 3632 0.106819 AGGAGGCATCATGGACAAGC 60.107 55.000 0.00 0.00 0.00 4.01
3773 3856 2.838813 GGAGCCTTGGAGGTTAGTAACT 59.161 50.000 12.65 0.00 37.80 2.24
4192 4277 6.753913 AGATGGCCTAGAACTGATCAATAA 57.246 37.500 3.32 0.00 0.00 1.40
4193 4278 7.327064 AGATGGCCTAGAACTGATCAATAAT 57.673 36.000 3.32 0.00 0.00 1.28
4194 4279 8.441311 AGATGGCCTAGAACTGATCAATAATA 57.559 34.615 3.32 0.00 0.00 0.98
4241 4326 3.788937 GCAGCTGGCAAATTTACATGAT 58.211 40.909 17.12 0.00 43.97 2.45
4291 4376 6.106003 ACGATATTATTCAGTGCAGTGTTCA 58.894 36.000 20.73 7.29 0.00 3.18
4614 4700 3.244875 TGGATACATGCTCACCACACTTT 60.245 43.478 0.00 0.00 46.17 2.66
4712 4798 4.865365 CGAAAGATCAAGAAGGTAGACCAC 59.135 45.833 0.66 0.00 38.89 4.16
4865 4951 1.131638 TTCCTCCACACAAGCAGAGT 58.868 50.000 0.00 0.00 0.00 3.24
4906 4992 0.250124 CACCGACACCACAGGCTAAA 60.250 55.000 0.00 0.00 0.00 1.85
5015 5101 2.976490 GCATCCACCTCAGGCTGGT 61.976 63.158 15.73 2.04 38.53 4.00
5145 5231 6.660521 AGATCTGTTGCATAATCTGAACCAAA 59.339 34.615 0.00 0.00 0.00 3.28
5156 5242 2.890945 TCTGAACCAAAAGGCTTTAGGC 59.109 45.455 13.77 5.69 41.43 3.93
5189 5275 4.856801 CGAAGCCCATCACCCCCG 62.857 72.222 0.00 0.00 0.00 5.73
5327 5413 7.174599 AGACGTTTGAGTATAGTAGACACAAGT 59.825 37.037 7.65 4.43 30.69 3.16
5467 5553 5.697473 TCAGTTCATCTAGCTCCTATTCG 57.303 43.478 0.00 0.00 0.00 3.34
5468 5554 5.377478 TCAGTTCATCTAGCTCCTATTCGA 58.623 41.667 0.00 0.00 0.00 3.71
5697 5802 2.315176 GATTCTCAGGCTAGGAGCTGA 58.685 52.381 0.00 0.00 41.99 4.26
5781 5886 6.792326 TGTAAATACTCTCACTGATGTACCG 58.208 40.000 0.00 0.00 0.00 4.02
5916 6022 6.700081 CCAATGGCTTTGTCTGATTATTGATG 59.300 38.462 11.60 0.00 33.15 3.07
5973 6079 0.396974 TGACCAGCACCAAGGCTTTT 60.397 50.000 0.00 0.00 42.71 2.27
6281 6394 7.206981 ACAACTTTGAACATGAGATAAGGTG 57.793 36.000 0.00 9.02 36.61 4.00
6309 6423 8.060931 TCTGTTAATATGCCTAAAATGCAACA 57.939 30.769 0.00 0.00 42.92 3.33
6335 6449 6.165577 ACACCAATTAATTTCAGTTCATGCC 58.834 36.000 0.00 0.00 0.00 4.40
6361 6475 9.638239 CAATAGGTAAACATGTGCTTTTGTAAT 57.362 29.630 0.00 0.00 0.00 1.89
6435 6556 1.068055 GTTTGCCCTTGCTGATGACAG 60.068 52.381 0.00 0.00 45.91 3.51
6465 6587 4.036734 CACACAACCAGCAAACTATTCAGT 59.963 41.667 0.00 0.00 36.19 3.41
6507 6629 8.764524 AGTAGAAACATGAGTAGATGAACAAC 57.235 34.615 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 0.251121 CCATGGGCGGTTATATGGCA 60.251 55.000 2.85 0.00 34.28 4.92
233 234 3.864789 AGGAAGGCTTCTTTTCTCACA 57.135 42.857 25.25 0.00 0.00 3.58
366 367 3.990318 AAAGCTAAAGAAACAGCGCTT 57.010 38.095 7.50 0.00 42.74 4.68
427 428 8.575454 GTTGCGTTCATCACAAGATTTATAAAC 58.425 33.333 0.00 0.00 30.20 2.01
431 432 6.500684 AGTTGCGTTCATCACAAGATTTAT 57.499 33.333 0.00 0.00 30.20 1.40
535 537 1.768870 ACAGGAATCCAACTATCCCCG 59.231 52.381 0.61 0.00 33.55 5.73
539 541 3.941483 CACCACACAGGAATCCAACTATC 59.059 47.826 0.61 0.00 41.22 2.08
872 882 1.067250 CTTCCTCCTAGCTCTGCGC 59.933 63.158 0.00 0.00 39.57 6.09
873 883 0.667993 CTCTTCCTCCTAGCTCTGCG 59.332 60.000 0.00 0.00 0.00 5.18
875 885 1.216678 TCCCTCTTCCTCCTAGCTCTG 59.783 57.143 0.00 0.00 0.00 3.35
878 888 0.560688 CCTCCCTCTTCCTCCTAGCT 59.439 60.000 0.00 0.00 0.00 3.32
879 889 0.471022 CCCTCCCTCTTCCTCCTAGC 60.471 65.000 0.00 0.00 0.00 3.42
880 890 1.146982 CTCCCTCCCTCTTCCTCCTAG 59.853 61.905 0.00 0.00 0.00 3.02
881 891 1.236708 CTCCCTCCCTCTTCCTCCTA 58.763 60.000 0.00 0.00 0.00 2.94
911 921 1.616628 TCCCCCTTCTGCCTCTTCC 60.617 63.158 0.00 0.00 0.00 3.46
912 922 1.201429 TGTCCCCCTTCTGCCTCTTC 61.201 60.000 0.00 0.00 0.00 2.87
913 923 1.151810 TGTCCCCCTTCTGCCTCTT 60.152 57.895 0.00 0.00 0.00 2.85
914 924 1.920835 GTGTCCCCCTTCTGCCTCT 60.921 63.158 0.00 0.00 0.00 3.69
915 925 2.671682 GTGTCCCCCTTCTGCCTC 59.328 66.667 0.00 0.00 0.00 4.70
916 926 2.936032 GGTGTCCCCCTTCTGCCT 60.936 66.667 0.00 0.00 0.00 4.75
917 927 1.279025 TATGGTGTCCCCCTTCTGCC 61.279 60.000 0.00 0.00 0.00 4.85
953 963 7.501225 AGAAAGAGATTGGTAGAGAGTAGTAGC 59.499 40.741 0.00 0.00 0.00 3.58
1195 1209 7.066766 CCTGAAAGAAAGATAGAAAGGTGGATG 59.933 40.741 0.00 0.00 34.07 3.51
1308 1322 2.764737 CCCATGGAGATGCCTGGCT 61.765 63.158 21.03 5.22 35.09 4.75
1339 1353 3.379445 TCCAGGTCGCCTTCGGAC 61.379 66.667 0.00 0.00 36.13 4.79
1342 1356 3.358076 GAGGTCCAGGTCGCCTTCG 62.358 68.421 0.00 0.00 31.89 3.79
1492 1509 0.180642 TCCACAGGGCGTTGTTTGTA 59.819 50.000 0.00 0.00 0.00 2.41
1719 1736 2.234908 ACATCTGCAGAGAACTGGTACC 59.765 50.000 22.96 4.43 43.62 3.34
1768 1785 1.850755 AATGAACACCCTCCCCGGT 60.851 57.895 0.00 0.00 36.18 5.28
2127 2172 6.547510 CCCATTAAGAAACCTCAAATCTAGGG 59.452 42.308 0.00 0.00 38.54 3.53
2140 2185 5.120674 GCAAAGTGCATTCCCATTAAGAAAC 59.879 40.000 0.00 0.00 44.26 2.78
2294 2348 6.455360 AAATGCTTTCACTGGTATGGTATG 57.545 37.500 0.00 0.00 0.00 2.39
2295 2349 6.546034 GGTAAATGCTTTCACTGGTATGGTAT 59.454 38.462 0.00 0.00 0.00 2.73
2296 2350 5.883673 GGTAAATGCTTTCACTGGTATGGTA 59.116 40.000 0.00 0.00 0.00 3.25
2297 2351 4.705023 GGTAAATGCTTTCACTGGTATGGT 59.295 41.667 0.00 0.00 0.00 3.55
2298 2352 4.097892 GGGTAAATGCTTTCACTGGTATGG 59.902 45.833 0.00 0.00 0.00 2.74
2357 2433 8.630037 CCAAAGTTTGAGAGGTTAAATAACTGT 58.370 33.333 17.33 0.00 36.47 3.55
2421 2497 1.766494 TGGAATGCCATGTAAGCAGG 58.234 50.000 0.00 0.00 44.90 4.85
2473 2555 5.431731 TCTCTTTCTCCTCTATCCTCTCTGT 59.568 44.000 0.00 0.00 0.00 3.41
2590 2672 0.320374 ACTTGGCTCGATTCACCGAA 59.680 50.000 0.00 0.00 38.17 4.30
2593 2675 1.084370 CCGACTTGGCTCGATTCACC 61.084 60.000 0.00 0.00 35.58 4.02
2619 2701 3.263425 CCAAGATGGTGGTACTGGTACTT 59.737 47.826 10.19 0.00 33.01 2.24
2621 2703 2.835764 TCCAAGATGGTGGTACTGGTAC 59.164 50.000 2.58 2.58 39.03 3.34
2721 2803 4.796038 ACCCTCTGCTTTCATGAAATTG 57.204 40.909 20.76 11.62 0.00 2.32
2985 3068 1.537202 CCCCTTTTCTCTTGTTGAGCG 59.463 52.381 0.00 0.00 42.38 5.03
3129 3212 1.152355 TTTCCCTGCAACCCCTTGG 60.152 57.895 0.00 0.00 37.80 3.61
3155 3238 0.668401 GAAGCATGGCTGGTTTGTGC 60.668 55.000 0.00 0.00 42.91 4.57
3385 3468 0.672342 ACACGTAGAGTTCGGCAAGT 59.328 50.000 0.00 0.00 0.00 3.16
3414 3497 3.724966 TTCTCATCCCCCATCTCCTTA 57.275 47.619 0.00 0.00 0.00 2.69
3433 3516 3.830755 AGCTCATTCACTTCCAGCATTTT 59.169 39.130 0.00 0.00 32.17 1.82
3549 3632 3.703001 TCTTTTGAAGTCCCTGCTAGG 57.297 47.619 0.00 0.00 34.30 3.02
3773 3856 3.640592 TGCATTTACGTGACGAGTTACA 58.359 40.909 13.70 0.00 0.00 2.41
4291 4376 1.704641 TATGCCCTATCTGTGCGACT 58.295 50.000 0.00 0.00 0.00 4.18
4354 4439 3.952323 AGAAAGCAGCATAGCATGTCAAT 59.048 39.130 0.00 0.00 36.85 2.57
4478 4563 3.499918 GTGATCACACCTTGGAGACAAAG 59.500 47.826 21.07 0.00 43.25 2.77
4582 4668 1.683943 CATGTATCCACCCAAGCTGG 58.316 55.000 0.00 0.00 37.25 4.85
4712 4798 2.931325 CTGCTGCAGCTTTCTTAGAGAG 59.069 50.000 36.61 19.07 42.66 3.20
4865 4951 5.885912 GTGCCCCTCAAAATCAGTAAGATTA 59.114 40.000 0.00 0.00 46.09 1.75
5015 5101 6.647334 TTTCCTGACATAAGCAAATCAACA 57.353 33.333 0.00 0.00 0.00 3.33
5145 5231 2.044946 CTGCCCGCCTAAAGCCTT 60.045 61.111 0.00 0.00 38.78 4.35
5156 5242 0.740868 TTCGAGAAGAATGCTGCCCG 60.741 55.000 0.00 0.00 33.14 6.13
5381 5467 3.633525 GGCATTCCTGTAAATCTGCATCA 59.366 43.478 0.00 0.00 0.00 3.07
5467 5553 2.420687 CCAATAGTGACCCTTGCCTCTC 60.421 54.545 0.00 0.00 0.00 3.20
5468 5554 1.561542 CCAATAGTGACCCTTGCCTCT 59.438 52.381 0.00 0.00 0.00 3.69
5514 5600 1.065926 CACAAGCTGATGAGGCCTACA 60.066 52.381 4.42 6.26 0.00 2.74
5570 5656 1.547901 GGCTGCCCTCTGGTAAAAACT 60.548 52.381 7.66 0.00 0.00 2.66
5576 5662 2.688666 CTGGGCTGCCCTCTGGTA 60.689 66.667 35.80 15.73 45.70 3.25
5697 5802 5.316167 TGAAACTGGCTTTAGTGTCATCAT 58.684 37.500 5.46 0.00 39.42 2.45
5741 5846 7.605449 AGTATTTACAAGTCAATGCATGCTTT 58.395 30.769 20.33 16.30 0.00 3.51
5781 5886 3.141398 TGGACTGTCATTCAGAGTTTGC 58.859 45.455 10.38 0.00 46.27 3.68
5916 6022 2.890808 TGGCGTCATATCCTCAGTTC 57.109 50.000 0.00 0.00 0.00 3.01
5973 6079 8.669946 TGAATGATAAAACACACTGAACACTA 57.330 30.769 0.00 0.00 0.00 2.74
6126 6232 1.269998 AGACAGTTCTGTGGTACGAGC 59.730 52.381 10.29 0.00 0.00 5.03
6281 6394 9.748708 TTGCATTTTAGGCATATTAACAGAATC 57.251 29.630 0.00 0.00 41.58 2.52
6309 6423 7.173047 GGCATGAACTGAAATTAATTGGTGTTT 59.827 33.333 0.39 0.00 0.00 2.83
6335 6449 9.638239 ATTACAAAAGCACATGTTTACCTATTG 57.362 29.630 0.00 0.00 0.00 1.90
6388 6502 6.776887 AAAGTATCCATTCTCATCCTCCAT 57.223 37.500 0.00 0.00 0.00 3.41
6435 6556 2.526304 TGCTGGTTGTGTGTAGTCTC 57.474 50.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.