Multiple sequence alignment - TraesCS5D01G355700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G355700 chr5D 100.000 3053 0 0 1 3053 437290410 437287358 0.000000e+00 5638.0
1 TraesCS5D01G355700 chr5D 87.853 1169 111 10 1458 2619 437218257 437217113 0.000000e+00 1343.0
2 TraesCS5D01G355700 chr5D 100.000 374 0 0 3244 3617 437287167 437286794 0.000000e+00 691.0
3 TraesCS5D01G355700 chr5D 85.938 384 39 4 992 1375 437218625 437218257 2.620000e-106 396.0
4 TraesCS5D01G355700 chr5A 94.688 1958 67 14 962 2890 552505053 552503104 0.000000e+00 3005.0
5 TraesCS5D01G355700 chr5A 89.645 1661 133 20 958 2617 552389359 552387737 0.000000e+00 2078.0
6 TraesCS5D01G355700 chr5A 84.203 671 71 15 4 646 552506934 552506271 1.430000e-173 619.0
7 TraesCS5D01G355700 chr5A 89.956 458 46 0 1289 1746 35192113 35191656 3.110000e-165 592.0
8 TraesCS5D01G355700 chr5A 89.083 458 48 1 1289 1746 322191774 322191319 5.240000e-158 568.0
9 TraesCS5D01G355700 chr5A 86.392 316 22 6 637 933 552505365 552505052 3.480000e-85 326.0
10 TraesCS5D01G355700 chr5A 83.133 166 17 5 2897 3052 552501542 552501378 1.350000e-29 141.0
11 TraesCS5D01G355700 chr5B 96.871 1662 46 2 962 2623 531512252 531510597 0.000000e+00 2776.0
12 TraesCS5D01G355700 chr5B 85.865 1040 101 11 1500 2539 531401556 531400563 0.000000e+00 1064.0
13 TraesCS5D01G355700 chr5B 83.426 718 88 17 808 1502 531406723 531406014 3.940000e-179 638.0
14 TraesCS5D01G355700 chr5B 90.487 452 43 0 5 456 531514512 531514061 6.680000e-167 597.0
15 TraesCS5D01G355700 chr5B 83.333 336 54 1 6 339 669150797 669150462 3.510000e-80 309.0
16 TraesCS5D01G355700 chr5B 80.867 392 64 8 58 447 67523346 67522964 7.590000e-77 298.0
17 TraesCS5D01G355700 chr5B 83.146 178 30 0 1 178 34578925 34579102 2.890000e-36 163.0
18 TraesCS5D01G355700 chr5B 86.316 95 11 2 351 445 677674711 677674619 6.390000e-18 102.0
19 TraesCS5D01G355700 chr7D 90.253 513 41 4 1289 1793 6961831 6961320 0.000000e+00 662.0
20 TraesCS5D01G355700 chr7D 85.000 120 17 1 3497 3616 452454861 452454979 1.760000e-23 121.0
21 TraesCS5D01G355700 chr3A 90.549 455 43 0 1292 1746 478687135 478686681 1.440000e-168 603.0
22 TraesCS5D01G355700 chr2B 90.393 458 44 0 1289 1746 1246333 1245876 1.440000e-168 603.0
23 TraesCS5D01G355700 chr3D 83.716 436 70 1 13 447 590166472 590166907 9.350000e-111 411.0
24 TraesCS5D01G355700 chr1B 81.432 447 83 0 1 447 670168834 670169280 2.050000e-97 366.0
25 TraesCS5D01G355700 chr1B 81.292 449 76 3 4 445 670032951 670032504 1.240000e-94 357.0
26 TraesCS5D01G355700 chr6D 82.169 415 71 3 35 447 291910173 291910586 1.600000e-93 353.0
27 TraesCS5D01G355700 chr1A 81.899 337 59 2 111 447 544945554 544945220 2.130000e-72 283.0
28 TraesCS5D01G355700 chr6A 85.833 120 16 1 738 856 117193781 117193900 3.790000e-25 126.0
29 TraesCS5D01G355700 chr6A 85.833 120 16 1 738 856 117213345 117213464 3.790000e-25 126.0
30 TraesCS5D01G355700 chr4D 81.982 111 13 6 3510 3617 69627800 69627694 1.790000e-13 87.9
31 TraesCS5D01G355700 chr2A 78.261 115 22 3 3504 3617 470229055 470229167 1.800000e-08 71.3
32 TraesCS5D01G355700 chr1D 88.235 51 6 0 3244 3294 494453461 494453511 1.080000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G355700 chr5D 437286794 437290410 3616 True 3164.50 5638 100.0000 1 3617 2 chr5D.!!$R2 3616
1 TraesCS5D01G355700 chr5D 437217113 437218625 1512 True 869.50 1343 86.8955 992 2619 2 chr5D.!!$R1 1627
2 TraesCS5D01G355700 chr5A 552387737 552389359 1622 True 2078.00 2078 89.6450 958 2617 1 chr5A.!!$R3 1659
3 TraesCS5D01G355700 chr5A 552501378 552506934 5556 True 1022.75 3005 87.1040 4 3052 4 chr5A.!!$R4 3048
4 TraesCS5D01G355700 chr5B 531510597 531514512 3915 True 1686.50 2776 93.6790 5 2623 2 chr5B.!!$R6 2618
5 TraesCS5D01G355700 chr5B 531400563 531401556 993 True 1064.00 1064 85.8650 1500 2539 1 chr5B.!!$R2 1039
6 TraesCS5D01G355700 chr5B 531406014 531406723 709 True 638.00 638 83.4260 808 1502 1 chr5B.!!$R3 694
7 TraesCS5D01G355700 chr7D 6961320 6961831 511 True 662.00 662 90.2530 1289 1793 1 chr7D.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 514 0.037447 GCTTTGTGAAGGGAGCCTCT 59.963 55.0 0.00 0.0 30.89 3.69 F
781 3036 0.240145 TCACTGACGTTAGACCAGCG 59.760 55.0 15.04 0.0 36.84 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1642 4018 1.220206 CAGACTTGCTGGAGCCGAT 59.780 57.895 0.00 0.0 41.07 4.18 R
2641 5030 0.827507 TTGGCCTGCTTGTCTTTCCC 60.828 55.000 3.32 0.0 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.703362 CCCAGGGGAATGGATGCCA 61.703 63.158 0.00 0.00 43.57 4.92
27 28 1.648302 CCAGGGGAATGGATGCCAGA 61.648 60.000 0.00 0.00 43.57 3.86
123 124 2.034532 TCGTGTGGGCGACTAGGA 59.965 61.111 0.31 0.00 35.83 2.94
126 127 0.742505 CGTGTGGGCGACTAGGAATA 59.257 55.000 0.31 0.00 0.00 1.75
138 139 3.830755 GACTAGGAATATAGTGGCGGGAA 59.169 47.826 0.00 0.00 36.13 3.97
154 155 1.449956 GAAGCTCAGGCCTGCTCTG 60.450 63.158 28.91 17.51 38.75 3.35
156 157 3.715097 GCTCAGGCCTGCTCTGGT 61.715 66.667 28.91 0.00 33.36 4.00
157 158 2.268280 CTCAGGCCTGCTCTGGTG 59.732 66.667 28.91 2.44 33.36 4.17
159 160 4.421515 CAGGCCTGCTCTGGTGGG 62.422 72.222 22.33 0.00 0.00 4.61
166 167 4.748144 GCTCTGGTGGGGCCCAAG 62.748 72.222 30.70 22.84 34.18 3.61
237 238 1.079543 GTGATGCAGGCGAGTGTCT 60.080 57.895 0.00 0.00 0.00 3.41
310 311 1.229428 CTTGCTTCTTGAAGACGGCA 58.771 50.000 15.02 15.02 33.49 5.69
353 354 2.029649 CAGGGCTCATGGTGAAAACTTG 60.030 50.000 0.00 0.00 0.00 3.16
379 380 3.753434 CTCAGACTCGGCAGCGGT 61.753 66.667 0.00 0.00 0.00 5.68
447 449 1.007154 GTCTCTATTCGGGCCTCGC 60.007 63.158 0.84 0.00 39.05 5.03
475 502 8.356533 AGTTGTATCTTTTGATTTGCTTTGTG 57.643 30.769 0.00 0.00 40.19 3.33
482 509 4.589216 TTGATTTGCTTTGTGAAGGGAG 57.411 40.909 0.00 0.00 33.34 4.30
487 514 0.037447 GCTTTGTGAAGGGAGCCTCT 59.963 55.000 0.00 0.00 30.89 3.69
498 525 1.300233 GAGCCTCTCCGCCGTATTG 60.300 63.158 0.00 0.00 0.00 1.90
508 535 1.597690 CCGCCGTATTGTATCGTTCGA 60.598 52.381 0.00 0.00 0.00 3.71
520 547 2.036556 TCGTTCGACCGTGTACTTTC 57.963 50.000 1.29 0.00 0.00 2.62
521 548 0.699151 CGTTCGACCGTGTACTTTCG 59.301 55.000 0.00 0.00 0.00 3.46
528 555 3.296628 GACCGTGTACTTTCGTTCGTTA 58.703 45.455 0.00 0.00 0.00 3.18
569 1889 8.854117 AGAAATATTCAGCCATCCTACAATTTC 58.146 33.333 0.00 0.00 0.00 2.17
582 1902 3.153629 AATTTCCACCCGCCCCACA 62.154 57.895 0.00 0.00 0.00 4.17
607 1927 2.019984 GTCAAATGCTAGCTTCCCCAG 58.980 52.381 17.23 0.00 0.00 4.45
663 2897 4.355543 TTTATCAAGCTTCCGAACATGC 57.644 40.909 0.00 0.00 0.00 4.06
686 2920 3.823873 TGCGGTAACTTGGATGAACAAAT 59.176 39.130 0.00 0.00 0.00 2.32
722 2964 4.633126 CACATGTACACATCCTTCCAGAAG 59.367 45.833 0.00 0.15 34.81 2.85
760 3015 7.360017 CGCATTTTATTCTGCTATATCCACGAA 60.360 37.037 0.00 0.00 36.23 3.85
772 3027 0.742505 TCCACGAACTCACTGACGTT 59.257 50.000 0.00 0.00 36.86 3.99
781 3036 0.240145 TCACTGACGTTAGACCAGCG 59.760 55.000 15.04 0.00 36.84 5.18
840 3098 4.829064 TCCGATTATAAAATGCTGCACC 57.171 40.909 3.57 0.00 0.00 5.01
844 3102 5.048504 CCGATTATAAAATGCTGCACCTGAT 60.049 40.000 3.57 0.00 0.00 2.90
883 3153 0.320946 TAATATTACCAGCGCGGCCC 60.321 55.000 16.48 0.00 39.03 5.80
884 3154 3.546714 ATATTACCAGCGCGGCCCC 62.547 63.158 16.48 0.00 39.03 5.80
925 3203 3.720193 CAGCGGCAGTGTCAGTGC 61.720 66.667 22.25 22.25 43.61 4.40
936 3214 1.125021 GTGTCAGTGCGTCGATCTTTG 59.875 52.381 0.00 0.00 0.00 2.77
944 3222 2.415168 TGCGTCGATCTTTGAATCAACC 59.585 45.455 0.00 0.00 0.00 3.77
946 3224 3.484229 GCGTCGATCTTTGAATCAACCAG 60.484 47.826 0.00 0.00 0.00 4.00
956 3234 1.876156 GAATCAACCAGCCATCGATCC 59.124 52.381 0.00 0.00 0.00 3.36
971 3251 3.165875 TCGATCCTCAGTCCAAGAAACT 58.834 45.455 0.00 0.00 0.00 2.66
1101 3387 4.192453 TTCCGGCCGGTGGTGTTT 62.192 61.111 41.57 0.00 36.47 2.83
1659 4035 1.220206 CATCGGCTCCAGCAAGTCT 59.780 57.895 0.03 0.00 44.36 3.24
1750 4126 2.281276 CTCAGTGGCTGCTGCACA 60.281 61.111 17.89 9.96 41.91 4.57
2546 4935 0.753848 GACCCGAGGAGGAAGAGGAG 60.754 65.000 0.00 0.00 45.00 3.69
2626 5015 0.525668 CATCCAGTGACTACGCCGAC 60.526 60.000 0.00 0.00 0.00 4.79
2640 5029 1.298859 GCCGACTTCGTTGGAATGCT 61.299 55.000 4.46 0.00 39.36 3.79
2641 5030 0.443869 CCGACTTCGTTGGAATGCTG 59.556 55.000 0.00 0.00 39.36 4.41
2642 5031 0.443869 CGACTTCGTTGGAATGCTGG 59.556 55.000 0.00 0.00 34.11 4.85
2654 5043 1.888512 GAATGCTGGGAAAGACAAGCA 59.111 47.619 0.00 0.00 36.69 3.91
2700 5089 8.616076 AGACAATTCGATCAATGTAATTCTTCC 58.384 33.333 0.00 0.00 31.22 3.46
2814 5208 4.968259 ACTAGTGCTACATTGGTCAAACA 58.032 39.130 0.00 0.00 0.00 2.83
2826 5223 8.010733 ACATTGGTCAAACAATTGATATAGGG 57.989 34.615 13.59 0.00 46.67 3.53
2828 5225 8.863086 CATTGGTCAAACAATTGATATAGGGAT 58.137 33.333 13.59 0.00 46.67 3.85
2831 5228 9.519191 TGGTCAAACAATTGATATAGGGATATG 57.481 33.333 13.59 0.00 46.67 1.78
2832 5229 8.462016 GGTCAAACAATTGATATAGGGATATGC 58.538 37.037 13.59 0.00 46.67 3.14
2835 5247 9.797556 CAAACAATTGATATAGGGATATGCATG 57.202 33.333 13.59 0.00 38.94 4.06
2849 5261 0.605589 TGCATGGGCCTTTTAAACCG 59.394 50.000 4.53 0.00 40.13 4.44
2906 6873 2.125766 AAAGCCCTCGACCTTGACCC 62.126 60.000 0.00 0.00 0.00 4.46
2910 6877 2.182030 CTCGACCTTGACCCGCTC 59.818 66.667 0.00 0.00 0.00 5.03
2972 6939 4.925861 GGCGAGCCATCAGGGAGC 62.926 72.222 9.58 0.00 40.01 4.70
2976 6943 2.685017 AGCCATCAGGGAGCGACA 60.685 61.111 0.00 0.00 40.01 4.35
2986 6963 2.255554 GAGCGACACGAGAGCACA 59.744 61.111 0.00 0.00 0.00 4.57
2992 6969 1.004277 GACACGAGAGCACACCTTCG 61.004 60.000 0.00 0.00 0.00 3.79
2994 6971 0.597637 CACGAGAGCACACCTTCGTT 60.598 55.000 0.00 0.00 0.00 3.85
2999 6976 1.845809 GAGCACACCTTCGTTGCCAG 61.846 60.000 0.00 0.00 0.00 4.85
3003 6980 0.036164 ACACCTTCGTTGCCAGCATA 59.964 50.000 0.00 0.00 0.00 3.14
3016 6993 0.464373 CAGCATATCCAACGGCCACT 60.464 55.000 2.24 0.00 0.00 4.00
3017 6994 0.464373 AGCATATCCAACGGCCACTG 60.464 55.000 2.24 0.00 0.00 3.66
3020 6997 0.464373 ATATCCAACGGCCACTGCAG 60.464 55.000 13.48 13.48 40.13 4.41
3037 7014 1.376424 AGGAGGCACAAGCATGTCG 60.376 57.895 0.00 0.00 44.61 4.35
3039 7016 1.364626 GGAGGCACAAGCATGTCGAG 61.365 60.000 0.00 0.00 44.61 4.04
3263 7240 2.563471 GGTACTCACCATGTCGTCTC 57.437 55.000 0.00 0.00 45.04 3.36
3264 7241 1.134560 GGTACTCACCATGTCGTCTCC 59.865 57.143 0.00 0.00 45.04 3.71
3265 7242 1.134560 GTACTCACCATGTCGTCTCCC 59.865 57.143 0.00 0.00 0.00 4.30
3266 7243 1.139734 CTCACCATGTCGTCTCCCG 59.860 63.158 0.00 0.00 38.13 5.14
3267 7244 2.509336 CACCATGTCGTCTCCCGC 60.509 66.667 0.00 0.00 36.19 6.13
3268 7245 3.771160 ACCATGTCGTCTCCCGCC 61.771 66.667 0.00 0.00 36.19 6.13
3269 7246 4.530857 CCATGTCGTCTCCCGCCC 62.531 72.222 0.00 0.00 36.19 6.13
3270 7247 3.770040 CATGTCGTCTCCCGCCCA 61.770 66.667 0.00 0.00 36.19 5.36
3271 7248 3.461773 ATGTCGTCTCCCGCCCAG 61.462 66.667 0.00 0.00 36.19 4.45
3272 7249 3.957435 ATGTCGTCTCCCGCCCAGA 62.957 63.158 0.00 0.00 36.19 3.86
3273 7250 3.148279 GTCGTCTCCCGCCCAGAT 61.148 66.667 0.00 0.00 36.19 2.90
3274 7251 3.147595 TCGTCTCCCGCCCAGATG 61.148 66.667 0.00 0.00 36.19 2.90
3275 7252 4.227134 CGTCTCCCGCCCAGATGG 62.227 72.222 0.00 0.00 37.09 3.51
3285 7262 3.089838 CCAGATGGGTTGGGCTGA 58.910 61.111 0.00 0.00 31.87 4.26
3286 7263 1.077212 CCAGATGGGTTGGGCTGAG 60.077 63.158 0.00 0.00 31.87 3.35
3287 7264 1.751927 CAGATGGGTTGGGCTGAGC 60.752 63.158 0.00 0.00 0.00 4.26
3288 7265 2.233566 AGATGGGTTGGGCTGAGCA 61.234 57.895 6.82 0.00 0.00 4.26
3289 7266 2.036256 ATGGGTTGGGCTGAGCAC 59.964 61.111 6.82 1.95 0.00 4.40
3290 7267 3.590466 ATGGGTTGGGCTGAGCACC 62.590 63.158 3.32 3.72 0.00 5.01
3307 7284 3.326578 CCCCCATGACGGACACCA 61.327 66.667 0.00 0.00 36.56 4.17
3308 7285 2.268920 CCCCATGACGGACACCAG 59.731 66.667 0.00 0.00 36.56 4.00
3309 7286 2.592993 CCCCATGACGGACACCAGT 61.593 63.158 0.00 0.00 36.56 4.00
3310 7287 1.261938 CCCCATGACGGACACCAGTA 61.262 60.000 0.00 0.00 36.56 2.74
3311 7288 0.830648 CCCATGACGGACACCAGTAT 59.169 55.000 0.00 0.00 36.56 2.12
3312 7289 2.036387 CCCATGACGGACACCAGTATA 58.964 52.381 0.00 0.00 36.56 1.47
3313 7290 2.035961 CCCATGACGGACACCAGTATAG 59.964 54.545 0.00 0.00 36.56 1.31
3314 7291 2.035961 CCATGACGGACACCAGTATAGG 59.964 54.545 0.00 0.00 36.56 2.57
3315 7292 1.108776 TGACGGACACCAGTATAGGC 58.891 55.000 0.00 0.00 0.00 3.93
3316 7293 0.388294 GACGGACACCAGTATAGGCC 59.612 60.000 0.00 0.00 0.00 5.19
3317 7294 0.324923 ACGGACACCAGTATAGGCCA 60.325 55.000 5.01 0.00 0.00 5.36
3318 7295 1.048601 CGGACACCAGTATAGGCCAT 58.951 55.000 5.01 0.00 0.00 4.40
3319 7296 1.000955 CGGACACCAGTATAGGCCATC 59.999 57.143 5.01 0.00 0.00 3.51
3320 7297 2.330216 GGACACCAGTATAGGCCATCT 58.670 52.381 5.01 0.00 0.00 2.90
3321 7298 2.300437 GGACACCAGTATAGGCCATCTC 59.700 54.545 5.01 0.00 0.00 2.75
3322 7299 2.300437 GACACCAGTATAGGCCATCTCC 59.700 54.545 5.01 0.00 0.00 3.71
3323 7300 2.329267 CACCAGTATAGGCCATCTCCA 58.671 52.381 5.01 0.00 0.00 3.86
3324 7301 2.705658 CACCAGTATAGGCCATCTCCAA 59.294 50.000 5.01 0.00 0.00 3.53
3325 7302 2.975489 ACCAGTATAGGCCATCTCCAAG 59.025 50.000 5.01 0.00 0.00 3.61
3326 7303 3.242867 CCAGTATAGGCCATCTCCAAGA 58.757 50.000 5.01 0.00 0.00 3.02
3327 7304 3.648067 CCAGTATAGGCCATCTCCAAGAA 59.352 47.826 5.01 0.00 0.00 2.52
3328 7305 4.262808 CCAGTATAGGCCATCTCCAAGAAG 60.263 50.000 5.01 0.00 0.00 2.85
3329 7306 3.906846 AGTATAGGCCATCTCCAAGAAGG 59.093 47.826 5.01 0.00 36.24 3.46
3332 7309 4.995594 CCATCTCCAAGAAGGCCC 57.004 61.111 0.00 0.00 37.29 5.80
3333 7310 2.001803 CCATCTCCAAGAAGGCCCA 58.998 57.895 0.00 0.00 37.29 5.36
3334 7311 0.554792 CCATCTCCAAGAAGGCCCAT 59.445 55.000 0.00 0.00 37.29 4.00
3335 7312 1.688772 CATCTCCAAGAAGGCCCATG 58.311 55.000 0.00 0.00 37.29 3.66
3336 7313 0.554792 ATCTCCAAGAAGGCCCATGG 59.445 55.000 4.14 4.14 37.29 3.66
3337 7314 0.846427 TCTCCAAGAAGGCCCATGGT 60.846 55.000 11.73 0.00 37.29 3.55
3338 7315 0.682209 CTCCAAGAAGGCCCATGGTG 60.682 60.000 11.73 3.26 37.29 4.17
3339 7316 2.353610 CCAAGAAGGCCCATGGTGC 61.354 63.158 11.73 13.54 0.00 5.01
3340 7317 1.607178 CAAGAAGGCCCATGGTGCA 60.607 57.895 21.92 0.00 0.00 4.57
3341 7318 1.155859 AAGAAGGCCCATGGTGCAA 59.844 52.632 21.92 0.00 0.00 4.08
3342 7319 0.471591 AAGAAGGCCCATGGTGCAAA 60.472 50.000 21.92 0.00 0.00 3.68
3343 7320 0.901580 AGAAGGCCCATGGTGCAAAG 60.902 55.000 21.92 3.64 0.00 2.77
3344 7321 0.899717 GAAGGCCCATGGTGCAAAGA 60.900 55.000 21.92 0.00 0.00 2.52
3345 7322 0.471591 AAGGCCCATGGTGCAAAGAA 60.472 50.000 21.92 0.00 0.00 2.52
3346 7323 1.187567 AGGCCCATGGTGCAAAGAAC 61.188 55.000 21.92 7.76 0.00 3.01
3347 7324 1.080569 GCCCATGGTGCAAAGAACG 60.081 57.895 17.38 0.00 0.00 3.95
3348 7325 1.523154 GCCCATGGTGCAAAGAACGA 61.523 55.000 17.38 0.00 0.00 3.85
3349 7326 0.958091 CCCATGGTGCAAAGAACGAA 59.042 50.000 11.73 0.00 0.00 3.85
3350 7327 1.545582 CCCATGGTGCAAAGAACGAAT 59.454 47.619 11.73 0.00 0.00 3.34
3351 7328 2.752354 CCCATGGTGCAAAGAACGAATA 59.248 45.455 11.73 0.00 0.00 1.75
3352 7329 3.381272 CCCATGGTGCAAAGAACGAATAT 59.619 43.478 11.73 0.00 0.00 1.28
3353 7330 4.142182 CCCATGGTGCAAAGAACGAATATT 60.142 41.667 11.73 0.00 0.00 1.28
3354 7331 5.036737 CCATGGTGCAAAGAACGAATATTC 58.963 41.667 2.57 5.30 0.00 1.75
3355 7332 5.163622 CCATGGTGCAAAGAACGAATATTCT 60.164 40.000 13.45 0.00 40.78 2.40
3356 7333 5.545658 TGGTGCAAAGAACGAATATTCTC 57.454 39.130 13.45 5.37 37.99 2.87
3357 7334 4.092821 TGGTGCAAAGAACGAATATTCTCG 59.907 41.667 13.45 4.63 44.50 4.04
3358 7335 4.328983 GGTGCAAAGAACGAATATTCTCGA 59.671 41.667 13.45 0.00 41.44 4.04
3359 7336 5.163893 GGTGCAAAGAACGAATATTCTCGAA 60.164 40.000 13.45 0.00 41.44 3.71
3360 7337 5.954349 GTGCAAAGAACGAATATTCTCGAAG 59.046 40.000 13.45 0.27 41.44 3.79
3361 7338 5.867174 TGCAAAGAACGAATATTCTCGAAGA 59.133 36.000 13.45 0.00 41.44 2.87
3362 7339 6.179193 GCAAAGAACGAATATTCTCGAAGAC 58.821 40.000 13.45 0.00 41.44 3.01
3363 7340 6.035112 GCAAAGAACGAATATTCTCGAAGACT 59.965 38.462 13.45 1.37 41.44 3.24
3364 7341 7.605259 CAAAGAACGAATATTCTCGAAGACTC 58.395 38.462 13.45 1.50 41.44 3.36
3365 7342 5.503498 AGAACGAATATTCTCGAAGACTCG 58.497 41.667 13.45 3.97 46.87 4.18
3366 7343 4.212213 ACGAATATTCTCGAAGACTCGG 57.788 45.455 13.45 0.00 45.49 4.63
3367 7344 3.626670 ACGAATATTCTCGAAGACTCGGT 59.373 43.478 13.45 0.00 45.49 4.69
3368 7345 3.969352 CGAATATTCTCGAAGACTCGGTG 59.031 47.826 13.45 0.00 45.49 4.94
3369 7346 2.846039 TATTCTCGAAGACTCGGTGC 57.154 50.000 0.00 0.00 45.49 5.01
3370 7347 0.888619 ATTCTCGAAGACTCGGTGCA 59.111 50.000 0.00 0.00 45.49 4.57
3371 7348 0.888619 TTCTCGAAGACTCGGTGCAT 59.111 50.000 0.00 0.00 45.49 3.96
3372 7349 1.746470 TCTCGAAGACTCGGTGCATA 58.254 50.000 0.00 0.00 45.49 3.14
3373 7350 1.400846 TCTCGAAGACTCGGTGCATAC 59.599 52.381 0.00 0.00 45.49 2.39
3374 7351 1.402259 CTCGAAGACTCGGTGCATACT 59.598 52.381 0.00 0.00 45.49 2.12
3375 7352 1.400846 TCGAAGACTCGGTGCATACTC 59.599 52.381 0.00 0.00 45.49 2.59
3376 7353 1.534175 CGAAGACTCGGTGCATACTCC 60.534 57.143 0.00 0.00 41.57 3.85
3377 7354 1.476891 GAAGACTCGGTGCATACTCCA 59.523 52.381 0.00 0.00 0.00 3.86
3378 7355 1.107114 AGACTCGGTGCATACTCCAG 58.893 55.000 0.00 0.00 0.00 3.86
3379 7356 0.103208 GACTCGGTGCATACTCCAGG 59.897 60.000 0.00 0.00 0.00 4.45
3380 7357 0.324368 ACTCGGTGCATACTCCAGGA 60.324 55.000 0.00 0.00 0.00 3.86
3381 7358 0.103208 CTCGGTGCATACTCCAGGAC 59.897 60.000 0.00 0.00 0.00 3.85
3382 7359 0.324368 TCGGTGCATACTCCAGGACT 60.324 55.000 0.00 0.00 0.00 3.85
3383 7360 0.537188 CGGTGCATACTCCAGGACTT 59.463 55.000 0.00 0.00 0.00 3.01
3384 7361 1.754803 CGGTGCATACTCCAGGACTTA 59.245 52.381 0.00 0.00 0.00 2.24
3385 7362 2.223829 CGGTGCATACTCCAGGACTTAG 60.224 54.545 0.00 0.00 0.00 2.18
3386 7363 3.031736 GGTGCATACTCCAGGACTTAGA 58.968 50.000 0.00 0.00 0.00 2.10
3387 7364 3.451178 GGTGCATACTCCAGGACTTAGAA 59.549 47.826 0.00 0.00 0.00 2.10
3388 7365 4.442192 GGTGCATACTCCAGGACTTAGAAG 60.442 50.000 0.00 0.00 0.00 2.85
3389 7366 4.160626 GTGCATACTCCAGGACTTAGAAGT 59.839 45.833 0.00 0.00 43.16 3.01
3401 7378 4.175787 ACTTAGAAGTCATCCACGACAC 57.824 45.455 0.00 0.00 38.43 3.67
3402 7379 3.056749 ACTTAGAAGTCATCCACGACACC 60.057 47.826 0.00 0.00 38.43 4.16
3403 7380 1.338107 AGAAGTCATCCACGACACCA 58.662 50.000 0.00 0.00 38.43 4.17
3404 7381 1.902508 AGAAGTCATCCACGACACCAT 59.097 47.619 0.00 0.00 38.43 3.55
3405 7382 3.096852 AGAAGTCATCCACGACACCATA 58.903 45.455 0.00 0.00 38.43 2.74
3406 7383 3.513912 AGAAGTCATCCACGACACCATAA 59.486 43.478 0.00 0.00 38.43 1.90
3407 7384 3.247006 AGTCATCCACGACACCATAAC 57.753 47.619 0.00 0.00 38.43 1.89
3408 7385 2.093658 AGTCATCCACGACACCATAACC 60.094 50.000 0.00 0.00 38.43 2.85
3409 7386 1.903183 TCATCCACGACACCATAACCA 59.097 47.619 0.00 0.00 0.00 3.67
3410 7387 2.503765 TCATCCACGACACCATAACCAT 59.496 45.455 0.00 0.00 0.00 3.55
3411 7388 3.707102 TCATCCACGACACCATAACCATA 59.293 43.478 0.00 0.00 0.00 2.74
3412 7389 4.346709 TCATCCACGACACCATAACCATAT 59.653 41.667 0.00 0.00 0.00 1.78
3413 7390 5.540719 TCATCCACGACACCATAACCATATA 59.459 40.000 0.00 0.00 0.00 0.86
3414 7391 5.204409 TCCACGACACCATAACCATATAC 57.796 43.478 0.00 0.00 0.00 1.47
3415 7392 3.985279 CCACGACACCATAACCATATACG 59.015 47.826 0.00 0.00 0.00 3.06
3416 7393 4.500205 CCACGACACCATAACCATATACGT 60.500 45.833 0.00 0.00 0.00 3.57
3417 7394 5.278414 CCACGACACCATAACCATATACGTA 60.278 44.000 0.00 0.00 0.00 3.57
3418 7395 5.854866 CACGACACCATAACCATATACGTAG 59.145 44.000 0.08 0.00 0.00 3.51
3420 7397 6.082338 CGACACCATAACCATATACGTAGTC 58.918 44.000 0.08 0.00 43.93 2.59
3421 7398 6.005583 ACACCATAACCATATACGTAGTCG 57.994 41.667 0.08 0.00 43.93 4.18
3422 7399 5.048504 ACACCATAACCATATACGTAGTCGG 60.049 44.000 0.08 3.43 43.93 4.79
3423 7400 4.082571 ACCATAACCATATACGTAGTCGGC 60.083 45.833 0.08 0.00 43.93 5.54
3424 7401 4.157289 CCATAACCATATACGTAGTCGGCT 59.843 45.833 0.08 0.00 43.93 5.52
3425 7402 5.336213 CCATAACCATATACGTAGTCGGCTT 60.336 44.000 0.00 1.85 43.93 4.35
3426 7403 6.127925 CCATAACCATATACGTAGTCGGCTTA 60.128 42.308 0.00 3.74 43.93 3.09
3427 7404 5.972107 AACCATATACGTAGTCGGCTTAT 57.028 39.130 0.00 0.00 43.93 1.73
3428 7405 5.557891 ACCATATACGTAGTCGGCTTATC 57.442 43.478 0.00 0.00 43.93 1.75
3429 7406 5.251764 ACCATATACGTAGTCGGCTTATCT 58.748 41.667 0.00 0.00 43.93 1.98
3430 7407 5.123502 ACCATATACGTAGTCGGCTTATCTG 59.876 44.000 0.00 0.00 43.93 2.90
3431 7408 5.123502 CCATATACGTAGTCGGCTTATCTGT 59.876 44.000 0.00 0.00 43.93 3.41
3432 7409 6.314648 CCATATACGTAGTCGGCTTATCTGTA 59.685 42.308 0.00 0.00 43.93 2.74
3433 7410 7.148356 CCATATACGTAGTCGGCTTATCTGTAA 60.148 40.741 0.00 0.00 43.93 2.41
3434 7411 4.284378 ACGTAGTCGGCTTATCTGTAAC 57.716 45.455 0.00 0.00 29.74 2.50
3435 7412 3.065925 ACGTAGTCGGCTTATCTGTAACC 59.934 47.826 0.00 0.00 29.74 2.85
3436 7413 3.549625 CGTAGTCGGCTTATCTGTAACCC 60.550 52.174 0.00 0.00 0.00 4.11
3437 7414 2.748388 AGTCGGCTTATCTGTAACCCT 58.252 47.619 0.00 0.00 0.00 4.34
3438 7415 3.907221 AGTCGGCTTATCTGTAACCCTA 58.093 45.455 0.00 0.00 0.00 3.53
3439 7416 3.890147 AGTCGGCTTATCTGTAACCCTAG 59.110 47.826 0.00 0.00 0.00 3.02
3440 7417 3.887716 GTCGGCTTATCTGTAACCCTAGA 59.112 47.826 0.00 0.00 0.00 2.43
3441 7418 3.887716 TCGGCTTATCTGTAACCCTAGAC 59.112 47.826 0.00 0.00 0.00 2.59
3442 7419 3.005578 CGGCTTATCTGTAACCCTAGACC 59.994 52.174 0.00 0.00 0.00 3.85
3443 7420 3.324268 GGCTTATCTGTAACCCTAGACCC 59.676 52.174 0.00 0.00 0.00 4.46
3444 7421 3.324268 GCTTATCTGTAACCCTAGACCCC 59.676 52.174 0.00 0.00 0.00 4.95
3445 7422 4.817286 CTTATCTGTAACCCTAGACCCCT 58.183 47.826 0.00 0.00 0.00 4.79
3446 7423 5.694949 GCTTATCTGTAACCCTAGACCCCTA 60.695 48.000 0.00 0.00 0.00 3.53
3447 7424 3.967467 TCTGTAACCCTAGACCCCTAG 57.033 52.381 0.00 0.00 41.58 3.02
3448 7425 3.204760 TCTGTAACCCTAGACCCCTAGT 58.795 50.000 0.00 0.00 40.57 2.57
3449 7426 4.383545 TCTGTAACCCTAGACCCCTAGTA 58.616 47.826 0.00 0.00 40.57 1.82
3450 7427 4.986900 TCTGTAACCCTAGACCCCTAGTAT 59.013 45.833 0.00 0.00 40.57 2.12
3451 7428 5.074239 TCTGTAACCCTAGACCCCTAGTATC 59.926 48.000 0.00 0.00 40.57 2.24
3452 7429 4.986900 TGTAACCCTAGACCCCTAGTATCT 59.013 45.833 0.00 0.00 40.57 1.98
3453 7430 6.160439 TGTAACCCTAGACCCCTAGTATCTA 58.840 44.000 0.00 0.00 40.57 1.98
3454 7431 6.801632 TGTAACCCTAGACCCCTAGTATCTAT 59.198 42.308 0.00 0.00 40.57 1.98
3455 7432 7.969481 TGTAACCCTAGACCCCTAGTATCTATA 59.031 40.741 0.00 0.00 40.57 1.31
3456 7433 7.918579 AACCCTAGACCCCTAGTATCTATAA 57.081 40.000 0.00 0.00 40.57 0.98
3457 7434 7.918579 ACCCTAGACCCCTAGTATCTATAAA 57.081 40.000 0.00 0.00 40.57 1.40
3458 7435 8.311128 ACCCTAGACCCCTAGTATCTATAAAA 57.689 38.462 0.00 0.00 40.57 1.52
3459 7436 8.176105 ACCCTAGACCCCTAGTATCTATAAAAC 58.824 40.741 0.00 0.00 40.57 2.43
3460 7437 8.175431 CCCTAGACCCCTAGTATCTATAAAACA 58.825 40.741 0.00 0.00 40.57 2.83
3461 7438 9.597681 CCTAGACCCCTAGTATCTATAAAACAA 57.402 37.037 0.00 0.00 40.57 2.83
3463 7440 8.493787 AGACCCCTAGTATCTATAAAACAAGG 57.506 38.462 0.00 0.00 0.00 3.61
3464 7441 7.513091 AGACCCCTAGTATCTATAAAACAAGGG 59.487 40.741 0.00 0.00 40.75 3.95
3466 7443 6.473758 CCCTAGTATCTATAAAACAAGGGGC 58.526 44.000 0.00 0.00 37.98 5.80
3467 7444 6.043938 CCCTAGTATCTATAAAACAAGGGGCA 59.956 42.308 0.00 0.00 37.98 5.36
3468 7445 7.162082 CCTAGTATCTATAAAACAAGGGGCAG 58.838 42.308 0.00 0.00 0.00 4.85
3469 7446 5.941788 AGTATCTATAAAACAAGGGGCAGG 58.058 41.667 0.00 0.00 0.00 4.85
3470 7447 3.662759 TCTATAAAACAAGGGGCAGGG 57.337 47.619 0.00 0.00 0.00 4.45
3471 7448 2.031870 CTATAAAACAAGGGGCAGGGC 58.968 52.381 0.00 0.00 0.00 5.19
3472 7449 0.413434 ATAAAACAAGGGGCAGGGCT 59.587 50.000 0.00 0.00 0.00 5.19
3473 7450 0.251608 TAAAACAAGGGGCAGGGCTC 60.252 55.000 0.00 0.00 0.00 4.70
3474 7451 3.868200 AAACAAGGGGCAGGGCTCG 62.868 63.158 0.00 0.00 0.00 5.03
3476 7453 3.399181 CAAGGGGCAGGGCTCGTA 61.399 66.667 0.00 0.00 0.00 3.43
3477 7454 2.609610 AAGGGGCAGGGCTCGTAA 60.610 61.111 0.00 0.00 0.00 3.18
3478 7455 2.228480 AAGGGGCAGGGCTCGTAAA 61.228 57.895 0.00 0.00 0.00 2.01
3479 7456 1.571773 AAGGGGCAGGGCTCGTAAAT 61.572 55.000 0.00 0.00 0.00 1.40
3480 7457 1.823899 GGGGCAGGGCTCGTAAATG 60.824 63.158 0.00 0.00 0.00 2.32
3481 7458 1.223487 GGGCAGGGCTCGTAAATGA 59.777 57.895 0.00 0.00 0.00 2.57
3482 7459 1.095807 GGGCAGGGCTCGTAAATGAC 61.096 60.000 0.00 0.00 0.00 3.06
3483 7460 0.392461 GGCAGGGCTCGTAAATGACA 60.392 55.000 0.00 0.00 0.00 3.58
3484 7461 1.448985 GCAGGGCTCGTAAATGACAA 58.551 50.000 0.00 0.00 0.00 3.18
3485 7462 2.017049 GCAGGGCTCGTAAATGACAAT 58.983 47.619 0.00 0.00 0.00 2.71
3486 7463 3.202906 GCAGGGCTCGTAAATGACAATA 58.797 45.455 0.00 0.00 0.00 1.90
3487 7464 3.248602 GCAGGGCTCGTAAATGACAATAG 59.751 47.826 0.00 0.00 0.00 1.73
3488 7465 3.809832 CAGGGCTCGTAAATGACAATAGG 59.190 47.826 0.00 0.00 0.00 2.57
3489 7466 2.548480 GGGCTCGTAAATGACAATAGGC 59.452 50.000 0.00 0.00 0.00 3.93
3490 7467 3.202906 GGCTCGTAAATGACAATAGGCA 58.797 45.455 0.00 0.00 31.50 4.75
3491 7468 3.625764 GGCTCGTAAATGACAATAGGCAA 59.374 43.478 0.00 0.00 31.50 4.52
3492 7469 4.275936 GGCTCGTAAATGACAATAGGCAAT 59.724 41.667 0.00 0.00 31.50 3.56
3493 7470 5.468746 GGCTCGTAAATGACAATAGGCAATA 59.531 40.000 0.00 0.00 31.50 1.90
3494 7471 6.149474 GGCTCGTAAATGACAATAGGCAATAT 59.851 38.462 0.00 0.00 31.50 1.28
3495 7472 7.308589 GGCTCGTAAATGACAATAGGCAATATT 60.309 37.037 0.00 0.00 34.24 1.28
3506 7483 7.984422 CAATAGGCAATATTGTGGTAGATCA 57.016 36.000 16.61 0.00 43.92 2.92
3507 7484 7.810658 CAATAGGCAATATTGTGGTAGATCAC 58.189 38.462 16.61 0.00 43.92 3.06
3508 7485 5.636903 AGGCAATATTGTGGTAGATCACT 57.363 39.130 16.61 0.00 38.40 3.41
3509 7486 6.006275 AGGCAATATTGTGGTAGATCACTT 57.994 37.500 16.61 0.00 38.40 3.16
3510 7487 5.824624 AGGCAATATTGTGGTAGATCACTTG 59.175 40.000 16.61 0.00 38.40 3.16
3511 7488 5.590259 GGCAATATTGTGGTAGATCACTTGT 59.410 40.000 16.61 0.00 38.40 3.16
3512 7489 6.765989 GGCAATATTGTGGTAGATCACTTGTA 59.234 38.462 16.61 0.00 38.40 2.41
3513 7490 7.254795 GGCAATATTGTGGTAGATCACTTGTAC 60.255 40.741 16.61 0.00 38.40 2.90
3514 7491 7.495934 GCAATATTGTGGTAGATCACTTGTACT 59.504 37.037 16.61 0.00 38.40 2.73
3515 7492 9.383519 CAATATTGTGGTAGATCACTTGTACTT 57.616 33.333 7.32 0.00 38.40 2.24
3516 7493 9.959721 AATATTGTGGTAGATCACTTGTACTTT 57.040 29.630 0.00 0.00 38.40 2.66
3520 7497 9.865321 TTGTGGTAGATCACTTGTACTTTATAC 57.135 33.333 0.00 0.00 38.40 1.47
3521 7498 9.251440 TGTGGTAGATCACTTGTACTTTATACT 57.749 33.333 0.00 0.00 38.40 2.12
3522 7499 9.733219 GTGGTAGATCACTTGTACTTTATACTC 57.267 37.037 0.00 0.00 34.98 2.59
3523 7500 8.910944 TGGTAGATCACTTGTACTTTATACTCC 58.089 37.037 0.00 0.00 0.00 3.85
3524 7501 8.910944 GGTAGATCACTTGTACTTTATACTCCA 58.089 37.037 0.00 0.00 0.00 3.86
3527 7504 8.643324 AGATCACTTGTACTTTATACTCCATCC 58.357 37.037 0.00 0.00 0.00 3.51
3528 7505 7.120923 TCACTTGTACTTTATACTCCATCCC 57.879 40.000 0.00 0.00 0.00 3.85
3529 7506 6.670464 TCACTTGTACTTTATACTCCATCCCA 59.330 38.462 0.00 0.00 0.00 4.37
3530 7507 7.181305 TCACTTGTACTTTATACTCCATCCCAA 59.819 37.037 0.00 0.00 0.00 4.12
3531 7508 7.827236 CACTTGTACTTTATACTCCATCCCAAA 59.173 37.037 0.00 0.00 0.00 3.28
3532 7509 8.557450 ACTTGTACTTTATACTCCATCCCAAAT 58.443 33.333 0.00 0.00 0.00 2.32
3533 7510 9.408648 CTTGTACTTTATACTCCATCCCAAATT 57.591 33.333 0.00 0.00 0.00 1.82
3543 7520 9.707957 ATACTCCATCCCAAATTAATACAAACA 57.292 29.630 0.00 0.00 0.00 2.83
3544 7521 7.836842 ACTCCATCCCAAATTAATACAAACAC 58.163 34.615 0.00 0.00 0.00 3.32
3545 7522 7.453126 ACTCCATCCCAAATTAATACAAACACA 59.547 33.333 0.00 0.00 0.00 3.72
3546 7523 8.195165 TCCATCCCAAATTAATACAAACACAA 57.805 30.769 0.00 0.00 0.00 3.33
3547 7524 8.310382 TCCATCCCAAATTAATACAAACACAAG 58.690 33.333 0.00 0.00 0.00 3.16
3548 7525 7.064490 CCATCCCAAATTAATACAAACACAAGC 59.936 37.037 0.00 0.00 0.00 4.01
3549 7526 7.055667 TCCCAAATTAATACAAACACAAGCA 57.944 32.000 0.00 0.00 0.00 3.91
3550 7527 7.675062 TCCCAAATTAATACAAACACAAGCAT 58.325 30.769 0.00 0.00 0.00 3.79
3551 7528 7.601886 TCCCAAATTAATACAAACACAAGCATG 59.398 33.333 0.00 0.00 0.00 4.06
3552 7529 7.601886 CCCAAATTAATACAAACACAAGCATGA 59.398 33.333 0.00 0.00 0.00 3.07
3553 7530 8.434661 CCAAATTAATACAAACACAAGCATGAC 58.565 33.333 0.00 0.00 0.00 3.06
3554 7531 7.795431 AATTAATACAAACACAAGCATGACG 57.205 32.000 0.00 0.00 0.00 4.35
3555 7532 2.679355 TACAAACACAAGCATGACGC 57.321 45.000 0.00 0.00 42.91 5.19
3556 7533 0.030638 ACAAACACAAGCATGACGCC 59.969 50.000 0.00 0.00 44.04 5.68
3557 7534 0.998226 CAAACACAAGCATGACGCCG 60.998 55.000 0.00 0.00 44.04 6.46
3558 7535 2.128853 AAACACAAGCATGACGCCGG 62.129 55.000 0.00 0.00 44.04 6.13
3559 7536 3.803082 CACAAGCATGACGCCGGG 61.803 66.667 2.18 0.00 44.04 5.73
3560 7537 4.329545 ACAAGCATGACGCCGGGT 62.330 61.111 2.18 0.00 44.04 5.28
3561 7538 2.125310 CAAGCATGACGCCGGGTA 60.125 61.111 2.18 0.00 44.04 3.69
3562 7539 1.523711 CAAGCATGACGCCGGGTAT 60.524 57.895 2.18 0.00 44.04 2.73
3563 7540 1.095228 CAAGCATGACGCCGGGTATT 61.095 55.000 2.18 0.00 44.04 1.89
3564 7541 0.466543 AAGCATGACGCCGGGTATTA 59.533 50.000 2.18 0.00 44.04 0.98
3565 7542 0.685097 AGCATGACGCCGGGTATTAT 59.315 50.000 2.18 0.00 44.04 1.28
3566 7543 1.076332 GCATGACGCCGGGTATTATC 58.924 55.000 2.18 0.00 32.94 1.75
3567 7544 1.337823 GCATGACGCCGGGTATTATCT 60.338 52.381 2.18 0.00 32.94 1.98
3568 7545 2.094390 GCATGACGCCGGGTATTATCTA 60.094 50.000 2.18 0.00 32.94 1.98
3569 7546 3.430374 GCATGACGCCGGGTATTATCTAT 60.430 47.826 2.18 0.00 32.94 1.98
3570 7547 4.755411 CATGACGCCGGGTATTATCTATT 58.245 43.478 2.18 0.00 0.00 1.73
3571 7548 4.445452 TGACGCCGGGTATTATCTATTC 57.555 45.455 2.18 0.00 0.00 1.75
3572 7549 3.119743 TGACGCCGGGTATTATCTATTCG 60.120 47.826 2.18 0.00 0.00 3.34
3573 7550 3.084039 ACGCCGGGTATTATCTATTCGA 58.916 45.455 2.18 0.00 0.00 3.71
3574 7551 3.128242 ACGCCGGGTATTATCTATTCGAG 59.872 47.826 2.18 0.00 0.00 4.04
3575 7552 3.376234 CGCCGGGTATTATCTATTCGAGA 59.624 47.826 2.18 0.00 39.01 4.04
3576 7553 4.496010 CGCCGGGTATTATCTATTCGAGAG 60.496 50.000 2.18 0.00 37.70 3.20
3577 7554 4.639310 GCCGGGTATTATCTATTCGAGAGA 59.361 45.833 2.18 1.98 37.70 3.10
3578 7555 5.220892 GCCGGGTATTATCTATTCGAGAGAG 60.221 48.000 2.18 0.00 43.69 3.20
3579 7556 5.881443 CCGGGTATTATCTATTCGAGAGAGT 59.119 44.000 0.00 0.00 43.69 3.24
3580 7557 6.374894 CCGGGTATTATCTATTCGAGAGAGTT 59.625 42.308 0.00 0.00 43.69 3.01
3581 7558 7.414319 CCGGGTATTATCTATTCGAGAGAGTTC 60.414 44.444 0.00 0.00 43.69 3.01
3582 7559 7.465989 GGGTATTATCTATTCGAGAGAGTTCG 58.534 42.308 5.48 0.00 43.69 3.95
3583 7560 7.333921 GGGTATTATCTATTCGAGAGAGTTCGA 59.666 40.741 5.48 0.00 46.86 3.71
3590 7567 1.463831 TCGAGAGAGTTCGAACCTTCG 59.536 52.381 24.22 23.86 45.69 3.79
3591 7568 3.127051 TCGAGAGAGTTCGAACCTTCGT 61.127 50.000 24.22 5.64 45.69 3.85
3592 7569 3.862264 TCGAGAGAGTTCGAACCTTCGTA 60.862 47.826 24.22 13.94 45.69 3.43
3593 7570 5.329948 TCGAGAGAGTTCGAACCTTCGTAA 61.330 45.833 24.22 10.54 45.69 3.18
3594 7571 6.761030 TCGAGAGAGTTCGAACCTTCGTAAA 61.761 44.000 24.22 9.94 45.69 2.01
3595 7572 8.159645 TCGAGAGAGTTCGAACCTTCGTAAAA 62.160 42.308 24.22 9.64 45.69 1.52
3601 7578 2.397549 CGAACCTTCGTAAAACCTCGT 58.602 47.619 0.00 0.00 45.09 4.18
3602 7579 2.154389 CGAACCTTCGTAAAACCTCGTG 59.846 50.000 0.00 0.00 45.09 4.35
3603 7580 2.896745 ACCTTCGTAAAACCTCGTGT 57.103 45.000 0.00 0.00 0.00 4.49
3604 7581 2.747436 ACCTTCGTAAAACCTCGTGTC 58.253 47.619 0.00 0.00 0.00 3.67
3605 7582 2.064014 CCTTCGTAAAACCTCGTGTCC 58.936 52.381 0.00 0.00 0.00 4.02
3606 7583 2.288640 CCTTCGTAAAACCTCGTGTCCT 60.289 50.000 0.00 0.00 0.00 3.85
3607 7584 3.387397 CTTCGTAAAACCTCGTGTCCTT 58.613 45.455 0.00 0.00 0.00 3.36
3608 7585 4.549458 CTTCGTAAAACCTCGTGTCCTTA 58.451 43.478 0.00 0.00 0.00 2.69
3609 7586 4.789012 TCGTAAAACCTCGTGTCCTTAT 57.211 40.909 0.00 0.00 0.00 1.73
3610 7587 5.138125 TCGTAAAACCTCGTGTCCTTATT 57.862 39.130 0.00 0.00 0.00 1.40
3611 7588 6.266168 TCGTAAAACCTCGTGTCCTTATTA 57.734 37.500 0.00 0.00 0.00 0.98
3612 7589 6.092748 TCGTAAAACCTCGTGTCCTTATTAC 58.907 40.000 0.00 0.00 0.00 1.89
3613 7590 5.289434 CGTAAAACCTCGTGTCCTTATTACC 59.711 44.000 0.00 0.00 0.00 2.85
3614 7591 4.895668 AAACCTCGTGTCCTTATTACCA 57.104 40.909 0.00 0.00 0.00 3.25
3615 7592 5.431179 AAACCTCGTGTCCTTATTACCAT 57.569 39.130 0.00 0.00 0.00 3.55
3616 7593 4.667519 ACCTCGTGTCCTTATTACCATC 57.332 45.455 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.589716 AAGCCAATCGTGAAGCCTGC 61.590 55.000 0.00 0.00 0.00 4.85
123 124 2.037772 CTGAGCTTCCCGCCACTATATT 59.962 50.000 0.00 0.00 40.39 1.28
126 127 1.690219 CCTGAGCTTCCCGCCACTAT 61.690 60.000 0.00 0.00 40.39 2.12
138 139 3.400928 CCAGAGCAGGCCTGAGCT 61.401 66.667 37.21 27.01 45.25 4.09
166 167 4.280019 AACTTGCCCACCCCGGAC 62.280 66.667 0.73 0.00 36.56 4.79
190 191 3.901797 CTCGGCCACCACCTCAACC 62.902 68.421 2.24 0.00 0.00 3.77
331 332 1.425066 AGTTTTCACCATGAGCCCTGA 59.575 47.619 0.00 0.00 0.00 3.86
435 437 2.660064 AACTCAGCGAGGCCCGAAT 61.660 57.895 16.53 2.49 41.76 3.34
447 449 8.697067 CAAAGCAAATCAAAAGATACAACTCAG 58.303 33.333 0.00 0.00 0.00 3.35
482 509 0.317479 ATACAATACGGCGGAGAGGC 59.683 55.000 13.24 0.00 42.76 4.70
487 514 1.597690 CGAACGATACAATACGGCGGA 60.598 52.381 13.24 1.23 0.00 5.54
493 520 3.429085 ACACGGTCGAACGATACAATAC 58.571 45.455 32.41 0.00 37.61 1.89
498 525 2.813779 AGTACACGGTCGAACGATAC 57.186 50.000 32.41 27.56 37.61 2.24
569 1889 4.676951 AACATGTGGGGCGGGTGG 62.677 66.667 0.00 0.00 0.00 4.61
582 1902 3.445096 GGGAAGCTAGCATTTGACAACAT 59.555 43.478 18.83 0.00 0.00 2.71
607 1927 2.902343 GCAATCCCCTACAGCCGC 60.902 66.667 0.00 0.00 0.00 6.53
608 1928 1.227674 GAGCAATCCCCTACAGCCG 60.228 63.158 0.00 0.00 0.00 5.52
639 1959 5.514279 CATGTTCGGAAGCTTGATAAATCC 58.486 41.667 2.10 0.00 0.00 3.01
663 2897 2.422597 TGTTCATCCAAGTTACCGCAG 58.577 47.619 0.00 0.00 0.00 5.18
686 2920 1.302431 CATGTGTCAACCGCCAGGA 60.302 57.895 0.00 0.00 41.02 3.86
722 2964 7.612266 CAGAATAAAATGCGTTTTTAGATGCC 58.388 34.615 21.05 6.09 41.74 4.40
760 3015 1.269998 GCTGGTCTAACGTCAGTGAGT 59.730 52.381 0.00 0.00 30.57 3.41
772 3027 3.461773 GGGCTGCTCGCTGGTCTA 61.462 66.667 0.00 0.00 39.13 2.59
781 3036 0.947244 CCGTTCAATATGGGCTGCTC 59.053 55.000 0.00 0.00 0.00 4.26
840 3098 4.776322 TTGGGTGGCGCGGATCAG 62.776 66.667 8.83 0.00 0.00 2.90
856 3126 5.504994 CCGCGCTGGTAATATTATTTGTGTT 60.505 40.000 5.56 0.00 0.00 3.32
925 3203 3.484229 GCTGGTTGATTCAAAGATCGACG 60.484 47.826 0.00 0.00 40.07 5.12
936 3214 1.876156 GGATCGATGGCTGGTTGATTC 59.124 52.381 0.54 0.00 0.00 2.52
944 3222 0.033228 GGACTGAGGATCGATGGCTG 59.967 60.000 0.54 0.00 38.61 4.85
946 3224 0.465705 TTGGACTGAGGATCGATGGC 59.534 55.000 0.54 0.00 38.61 4.40
956 3234 3.434984 GCTTAGCAGTTTCTTGGACTGAG 59.565 47.826 8.33 0.00 45.72 3.35
971 3251 1.141881 GACGCTAGGCAGCTTAGCA 59.858 57.895 29.95 0.00 46.26 3.49
989 3269 0.924363 GTGATCCATCGTCGACGTCG 60.924 60.000 34.40 31.30 40.80 5.12
990 3270 0.098200 TGTGATCCATCGTCGACGTC 59.902 55.000 34.40 24.66 40.80 4.34
1179 3465 1.751927 GGGGAAGTCCGAGTAGCGA 60.752 63.158 0.00 0.00 44.57 4.93
1283 3569 4.351938 TCCGGAACCTGACGCACG 62.352 66.667 0.00 0.00 0.00 5.34
1355 3641 2.214216 CCGTTCCACCTCTCCCACA 61.214 63.158 0.00 0.00 0.00 4.17
1441 3727 3.764466 CGTCTCCGGCTCCTGCTT 61.764 66.667 0.00 0.00 39.59 3.91
1642 4018 1.220206 CAGACTTGCTGGAGCCGAT 59.780 57.895 0.00 0.00 41.07 4.18
1659 4035 4.873129 GCGGCGATCTCGAAGGCA 62.873 66.667 12.98 0.00 43.02 4.75
1756 4132 4.404098 GATCCCGCCCCACACGTT 62.404 66.667 0.00 0.00 0.00 3.99
1771 4147 2.240279 GTAGAGGTACCCGATGCTGAT 58.760 52.381 8.74 0.00 0.00 2.90
1969 4349 4.702081 GAGGCACGACGACACGCT 62.702 66.667 0.00 0.00 36.70 5.07
2153 4533 2.137425 TTTCAGCTTCTCGTCGCCGA 62.137 55.000 0.00 0.00 41.73 5.54
2626 5015 1.533625 TTCCCAGCATTCCAACGAAG 58.466 50.000 0.00 0.00 0.00 3.79
2640 5029 1.228552 GGCCTGCTTGTCTTTCCCA 60.229 57.895 0.00 0.00 0.00 4.37
2641 5030 0.827507 TTGGCCTGCTTGTCTTTCCC 60.828 55.000 3.32 0.00 0.00 3.97
2642 5031 1.039856 TTTGGCCTGCTTGTCTTTCC 58.960 50.000 3.32 0.00 0.00 3.13
2654 5043 3.791545 TCTAATACCCATCCTTTTGGCCT 59.208 43.478 3.32 0.00 40.12 5.19
2705 5094 9.919416 TTTGAATTACATTGATCTATCCCTGAA 57.081 29.630 0.00 0.00 0.00 3.02
2706 5095 9.342308 GTTTGAATTACATTGATCTATCCCTGA 57.658 33.333 0.00 0.00 0.00 3.86
2707 5096 8.571336 GGTTTGAATTACATTGATCTATCCCTG 58.429 37.037 0.00 0.00 0.00 4.45
2714 5103 7.657336 ACAAACGGTTTGAATTACATTGATCT 58.343 30.769 33.41 8.78 43.26 2.75
2784 5178 9.899661 TGACCAATGTAGCACTAGTTATAAATT 57.100 29.630 0.00 0.00 0.00 1.82
2814 5208 6.073314 GCCCATGCATATCCCTATATCAATT 58.927 40.000 0.00 0.00 37.47 2.32
2826 5223 4.631131 GGTTTAAAAGGCCCATGCATATC 58.369 43.478 0.00 0.00 40.13 1.63
2828 5225 2.428890 CGGTTTAAAAGGCCCATGCATA 59.571 45.455 0.00 0.00 40.13 3.14
2829 5226 1.206849 CGGTTTAAAAGGCCCATGCAT 59.793 47.619 0.00 0.00 40.13 3.96
2830 5227 0.605589 CGGTTTAAAAGGCCCATGCA 59.394 50.000 0.00 0.00 40.13 3.96
2831 5228 0.892063 TCGGTTTAAAAGGCCCATGC 59.108 50.000 0.00 0.00 0.00 4.06
2832 5229 3.669251 TTTCGGTTTAAAAGGCCCATG 57.331 42.857 0.00 0.00 0.00 3.66
2890 5302 4.452733 CGGGTCAAGGTCGAGGGC 62.453 72.222 0.00 0.00 0.00 5.19
2891 5303 4.452733 GCGGGTCAAGGTCGAGGG 62.453 72.222 0.00 0.00 0.00 4.30
2892 5304 3.358076 GAGCGGGTCAAGGTCGAGG 62.358 68.421 1.64 0.00 0.00 4.63
2893 5305 2.182030 GAGCGGGTCAAGGTCGAG 59.818 66.667 1.64 0.00 0.00 4.04
2894 5306 3.379445 GGAGCGGGTCAAGGTCGA 61.379 66.667 9.66 0.00 37.02 4.20
2954 6921 4.598894 CTCCCTGATGGCTCGCCG 62.599 72.222 3.14 0.00 39.42 6.46
2955 6922 4.925861 GCTCCCTGATGGCTCGCC 62.926 72.222 0.00 0.00 0.00 5.54
2966 6933 3.444805 GCTCTCGTGTCGCTCCCT 61.445 66.667 0.00 0.00 0.00 4.20
2972 6939 1.004277 GAAGGTGTGCTCTCGTGTCG 61.004 60.000 0.00 0.00 0.00 4.35
2976 6943 0.597637 CAACGAAGGTGTGCTCTCGT 60.598 55.000 0.00 0.00 35.23 4.18
2986 6963 1.668419 GATATGCTGGCAACGAAGGT 58.332 50.000 0.00 0.00 42.51 3.50
2992 6969 0.381801 CCGTTGGATATGCTGGCAAC 59.618 55.000 0.00 0.00 0.00 4.17
2994 6971 1.823470 GCCGTTGGATATGCTGGCA 60.823 57.895 16.60 0.00 42.03 4.92
2999 6976 2.024918 CAGTGGCCGTTGGATATGC 58.975 57.895 0.00 0.00 0.00 3.14
3003 6980 2.360350 CTGCAGTGGCCGTTGGAT 60.360 61.111 5.25 0.00 40.13 3.41
3017 6994 1.930908 GACATGCTTGTGCCTCCTGC 61.931 60.000 10.37 0.00 35.79 4.85
3020 6997 1.364626 CTCGACATGCTTGTGCCTCC 61.365 60.000 10.37 0.00 35.79 4.30
3027 7004 1.197721 GGGTTTGACTCGACATGCTTG 59.802 52.381 0.00 0.00 0.00 4.01
3030 7007 1.079503 GAGGGTTTGACTCGACATGC 58.920 55.000 0.00 0.00 0.00 4.06
3243 7220 1.134560 GAGACGACATGGTGAGTACCC 59.865 57.143 0.00 0.00 46.96 3.69
3245 7222 1.134560 GGGAGACGACATGGTGAGTAC 59.865 57.143 0.00 0.00 0.00 2.73
3246 7223 1.471119 GGGAGACGACATGGTGAGTA 58.529 55.000 0.00 0.00 0.00 2.59
3247 7224 2.277858 GGGAGACGACATGGTGAGT 58.722 57.895 0.00 0.00 0.00 3.41
3268 7245 1.077212 CTCAGCCCAACCCATCTGG 60.077 63.158 0.00 0.00 41.37 3.86
3269 7246 1.751927 GCTCAGCCCAACCCATCTG 60.752 63.158 0.00 0.00 0.00 2.90
3270 7247 2.233566 TGCTCAGCCCAACCCATCT 61.234 57.895 0.00 0.00 0.00 2.90
3271 7248 2.048603 GTGCTCAGCCCAACCCATC 61.049 63.158 0.00 0.00 0.00 3.51
3272 7249 2.036256 GTGCTCAGCCCAACCCAT 59.964 61.111 0.00 0.00 0.00 4.00
3273 7250 4.284550 GGTGCTCAGCCCAACCCA 62.285 66.667 0.00 0.00 0.00 4.51
3290 7267 3.326578 TGGTGTCCGTCATGGGGG 61.327 66.667 0.00 0.00 38.76 5.40
3291 7268 1.261938 TACTGGTGTCCGTCATGGGG 61.262 60.000 0.00 0.00 38.76 4.96
3292 7269 0.830648 ATACTGGTGTCCGTCATGGG 59.169 55.000 0.00 0.00 38.76 4.00
3293 7270 2.035961 CCTATACTGGTGTCCGTCATGG 59.964 54.545 0.00 0.00 40.09 3.66
3294 7271 2.545952 GCCTATACTGGTGTCCGTCATG 60.546 54.545 0.00 0.00 0.00 3.07
3295 7272 1.687123 GCCTATACTGGTGTCCGTCAT 59.313 52.381 0.00 0.00 0.00 3.06
3296 7273 1.108776 GCCTATACTGGTGTCCGTCA 58.891 55.000 0.00 0.00 0.00 4.35
3297 7274 0.388294 GGCCTATACTGGTGTCCGTC 59.612 60.000 0.00 0.00 0.00 4.79
3298 7275 0.324923 TGGCCTATACTGGTGTCCGT 60.325 55.000 3.32 0.00 0.00 4.69
3299 7276 1.000955 GATGGCCTATACTGGTGTCCG 59.999 57.143 3.32 0.00 0.00 4.79
3300 7277 2.300437 GAGATGGCCTATACTGGTGTCC 59.700 54.545 3.32 0.00 0.00 4.02
3301 7278 2.300437 GGAGATGGCCTATACTGGTGTC 59.700 54.545 3.32 0.00 0.00 3.67
3302 7279 2.330216 GGAGATGGCCTATACTGGTGT 58.670 52.381 3.32 0.00 0.00 4.16
3303 7280 2.329267 TGGAGATGGCCTATACTGGTG 58.671 52.381 3.32 0.00 0.00 4.17
3304 7281 2.795291 TGGAGATGGCCTATACTGGT 57.205 50.000 3.32 0.00 0.00 4.00
3305 7282 3.242867 TCTTGGAGATGGCCTATACTGG 58.757 50.000 3.32 0.00 0.00 4.00
3306 7283 4.262808 CCTTCTTGGAGATGGCCTATACTG 60.263 50.000 3.32 0.00 38.35 2.74
3307 7284 3.906846 CCTTCTTGGAGATGGCCTATACT 59.093 47.826 3.32 0.00 38.35 2.12
3308 7285 4.278975 CCTTCTTGGAGATGGCCTATAC 57.721 50.000 3.32 0.00 38.35 1.47
3315 7292 0.554792 ATGGGCCTTCTTGGAGATGG 59.445 55.000 4.53 5.71 41.18 3.51
3316 7293 1.688772 CATGGGCCTTCTTGGAGATG 58.311 55.000 4.53 0.00 38.35 2.90
3317 7294 0.554792 CCATGGGCCTTCTTGGAGAT 59.445 55.000 2.85 0.00 38.35 2.75
3318 7295 0.846427 ACCATGGGCCTTCTTGGAGA 60.846 55.000 18.09 0.00 38.35 3.71
3319 7296 0.682209 CACCATGGGCCTTCTTGGAG 60.682 60.000 18.09 8.41 38.35 3.86
3320 7297 1.383799 CACCATGGGCCTTCTTGGA 59.616 57.895 18.09 0.00 38.35 3.53
3321 7298 2.353610 GCACCATGGGCCTTCTTGG 61.354 63.158 18.09 7.56 37.79 3.61
3322 7299 1.186917 TTGCACCATGGGCCTTCTTG 61.187 55.000 18.09 4.15 0.00 3.02
3323 7300 0.471591 TTTGCACCATGGGCCTTCTT 60.472 50.000 18.09 0.00 0.00 2.52
3324 7301 0.901580 CTTTGCACCATGGGCCTTCT 60.902 55.000 18.09 0.00 0.00 2.85
3325 7302 0.899717 TCTTTGCACCATGGGCCTTC 60.900 55.000 18.09 0.36 0.00 3.46
3326 7303 0.471591 TTCTTTGCACCATGGGCCTT 60.472 50.000 18.09 0.00 0.00 4.35
3327 7304 1.155859 TTCTTTGCACCATGGGCCT 59.844 52.632 18.09 0.00 0.00 5.19
3328 7305 1.293179 GTTCTTTGCACCATGGGCC 59.707 57.895 18.09 6.83 0.00 5.80
3329 7306 1.080569 CGTTCTTTGCACCATGGGC 60.081 57.895 18.09 16.81 0.00 5.36
3330 7307 0.958091 TTCGTTCTTTGCACCATGGG 59.042 50.000 18.09 6.26 0.00 4.00
3331 7308 4.637483 ATATTCGTTCTTTGCACCATGG 57.363 40.909 11.19 11.19 0.00 3.66
3332 7309 5.883661 AGAATATTCGTTCTTTGCACCATG 58.116 37.500 9.78 0.00 34.92 3.66
3333 7310 5.220662 CGAGAATATTCGTTCTTTGCACCAT 60.221 40.000 9.78 0.00 38.51 3.55
3334 7311 4.092821 CGAGAATATTCGTTCTTTGCACCA 59.907 41.667 9.78 0.00 38.51 4.17
3335 7312 4.328983 TCGAGAATATTCGTTCTTTGCACC 59.671 41.667 9.78 0.00 38.51 5.01
3336 7313 5.450376 TCGAGAATATTCGTTCTTTGCAC 57.550 39.130 9.78 0.00 38.51 4.57
3337 7314 5.867174 TCTTCGAGAATATTCGTTCTTTGCA 59.133 36.000 9.78 0.00 38.51 4.08
3338 7315 6.035112 AGTCTTCGAGAATATTCGTTCTTTGC 59.965 38.462 9.78 0.00 38.51 3.68
3339 7316 7.513190 AGTCTTCGAGAATATTCGTTCTTTG 57.487 36.000 9.78 0.00 38.51 2.77
3340 7317 7.743520 GAGTCTTCGAGAATATTCGTTCTTT 57.256 36.000 9.78 0.00 38.51 2.52
3356 7333 1.534175 GGAGTATGCACCGAGTCTTCG 60.534 57.143 0.00 0.00 46.29 3.79
3357 7334 1.476891 TGGAGTATGCACCGAGTCTTC 59.523 52.381 0.00 0.00 0.00 2.87
3358 7335 1.478510 CTGGAGTATGCACCGAGTCTT 59.521 52.381 0.00 0.00 28.70 3.01
3359 7336 1.107114 CTGGAGTATGCACCGAGTCT 58.893 55.000 0.00 0.00 28.70 3.24
3360 7337 0.103208 CCTGGAGTATGCACCGAGTC 59.897 60.000 0.00 0.00 28.70 3.36
3361 7338 0.324368 TCCTGGAGTATGCACCGAGT 60.324 55.000 0.00 0.00 28.70 4.18
3362 7339 0.103208 GTCCTGGAGTATGCACCGAG 59.897 60.000 0.00 0.00 28.70 4.63
3363 7340 0.324368 AGTCCTGGAGTATGCACCGA 60.324 55.000 1.14 0.00 28.70 4.69
3364 7341 0.537188 AAGTCCTGGAGTATGCACCG 59.463 55.000 4.07 0.00 28.70 4.94
3365 7342 3.031736 TCTAAGTCCTGGAGTATGCACC 58.968 50.000 4.07 0.00 28.70 5.01
3366 7343 4.160626 ACTTCTAAGTCCTGGAGTATGCAC 59.839 45.833 4.07 0.00 32.86 4.57
3367 7344 4.353777 ACTTCTAAGTCCTGGAGTATGCA 58.646 43.478 4.07 0.00 32.86 3.96
3380 7357 3.056749 GGTGTCGTGGATGACTTCTAAGT 60.057 47.826 0.00 0.00 43.16 2.24
3381 7358 3.056821 TGGTGTCGTGGATGACTTCTAAG 60.057 47.826 0.90 0.00 39.64 2.18
3382 7359 2.894765 TGGTGTCGTGGATGACTTCTAA 59.105 45.455 0.90 0.00 39.64 2.10
3383 7360 2.521126 TGGTGTCGTGGATGACTTCTA 58.479 47.619 0.90 0.00 39.64 2.10
3384 7361 1.338107 TGGTGTCGTGGATGACTTCT 58.662 50.000 0.90 0.00 39.64 2.85
3385 7362 2.386661 ATGGTGTCGTGGATGACTTC 57.613 50.000 0.90 0.00 39.64 3.01
3386 7363 3.596214 GTTATGGTGTCGTGGATGACTT 58.404 45.455 0.90 0.00 39.64 3.01
3387 7364 2.093658 GGTTATGGTGTCGTGGATGACT 60.094 50.000 0.90 0.00 39.64 3.41
3388 7365 2.277084 GGTTATGGTGTCGTGGATGAC 58.723 52.381 0.00 0.00 39.37 3.06
3389 7366 1.903183 TGGTTATGGTGTCGTGGATGA 59.097 47.619 0.00 0.00 0.00 2.92
3390 7367 2.394930 TGGTTATGGTGTCGTGGATG 57.605 50.000 0.00 0.00 0.00 3.51
3391 7368 4.974645 ATATGGTTATGGTGTCGTGGAT 57.025 40.909 0.00 0.00 0.00 3.41
3392 7369 4.261698 CGTATATGGTTATGGTGTCGTGGA 60.262 45.833 0.00 0.00 0.00 4.02
3393 7370 3.985279 CGTATATGGTTATGGTGTCGTGG 59.015 47.826 0.00 0.00 0.00 4.94
3394 7371 4.613944 ACGTATATGGTTATGGTGTCGTG 58.386 43.478 0.00 0.00 0.00 4.35
3395 7372 4.924305 ACGTATATGGTTATGGTGTCGT 57.076 40.909 0.00 0.00 0.00 4.34
3396 7373 6.005583 ACTACGTATATGGTTATGGTGTCG 57.994 41.667 0.00 0.00 0.00 4.35
3397 7374 6.082338 CGACTACGTATATGGTTATGGTGTC 58.918 44.000 0.00 0.00 34.56 3.67
3398 7375 5.048504 CCGACTACGTATATGGTTATGGTGT 60.049 44.000 0.00 0.00 37.88 4.16
3399 7376 5.396484 CCGACTACGTATATGGTTATGGTG 58.604 45.833 0.00 0.00 37.88 4.17
3400 7377 4.082571 GCCGACTACGTATATGGTTATGGT 60.083 45.833 0.00 0.00 37.88 3.55
3401 7378 4.157289 AGCCGACTACGTATATGGTTATGG 59.843 45.833 0.00 0.00 37.88 2.74
3402 7379 5.306532 AGCCGACTACGTATATGGTTATG 57.693 43.478 0.00 0.00 37.88 1.90
3403 7380 5.972107 AAGCCGACTACGTATATGGTTAT 57.028 39.130 0.00 0.00 37.88 1.89
3404 7381 6.881065 AGATAAGCCGACTACGTATATGGTTA 59.119 38.462 0.00 2.62 37.88 2.85
3405 7382 5.709164 AGATAAGCCGACTACGTATATGGTT 59.291 40.000 0.00 0.39 37.88 3.67
3406 7383 5.123502 CAGATAAGCCGACTACGTATATGGT 59.876 44.000 0.00 0.00 37.88 3.55
3407 7384 5.123502 ACAGATAAGCCGACTACGTATATGG 59.876 44.000 0.00 0.00 37.88 2.74
3408 7385 6.179504 ACAGATAAGCCGACTACGTATATG 57.820 41.667 0.00 0.00 37.88 1.78
3409 7386 7.148340 GGTTACAGATAAGCCGACTACGTATAT 60.148 40.741 0.00 0.00 37.88 0.86
3410 7387 6.147821 GGTTACAGATAAGCCGACTACGTATA 59.852 42.308 0.00 0.00 37.88 1.47
3411 7388 5.049129 GGTTACAGATAAGCCGACTACGTAT 60.049 44.000 0.00 0.00 37.88 3.06
3412 7389 4.273480 GGTTACAGATAAGCCGACTACGTA 59.727 45.833 0.00 0.00 37.88 3.57
3413 7390 3.065925 GGTTACAGATAAGCCGACTACGT 59.934 47.826 0.00 0.00 37.88 3.57
3414 7391 3.549625 GGGTTACAGATAAGCCGACTACG 60.550 52.174 0.00 0.00 46.27 3.51
3415 7392 3.974912 GGGTTACAGATAAGCCGACTAC 58.025 50.000 0.00 0.00 46.27 2.73
3422 7399 3.324268 GGGGTCTAGGGTTACAGATAAGC 59.676 52.174 0.00 0.00 37.95 3.09
3423 7400 4.817286 AGGGGTCTAGGGTTACAGATAAG 58.183 47.826 0.00 0.00 0.00 1.73
3424 7401 4.913154 AGGGGTCTAGGGTTACAGATAA 57.087 45.455 0.00 0.00 0.00 1.75
3425 7402 4.986900 ACTAGGGGTCTAGGGTTACAGATA 59.013 45.833 0.00 0.00 45.50 1.98
3426 7403 3.798422 ACTAGGGGTCTAGGGTTACAGAT 59.202 47.826 0.00 0.00 45.50 2.90
3427 7404 3.204760 ACTAGGGGTCTAGGGTTACAGA 58.795 50.000 0.00 0.00 45.50 3.41
3428 7405 3.684408 ACTAGGGGTCTAGGGTTACAG 57.316 52.381 0.00 0.00 45.50 2.74
3429 7406 4.986900 AGATACTAGGGGTCTAGGGTTACA 59.013 45.833 0.00 0.00 45.50 2.41
3430 7407 5.597430 AGATACTAGGGGTCTAGGGTTAC 57.403 47.826 0.00 0.00 45.50 2.50
3431 7408 9.423594 TTTATAGATACTAGGGGTCTAGGGTTA 57.576 37.037 0.00 0.00 45.50 2.85
3432 7409 7.918579 TTATAGATACTAGGGGTCTAGGGTT 57.081 40.000 0.00 0.00 45.50 4.11
3433 7410 7.918579 TTTATAGATACTAGGGGTCTAGGGT 57.081 40.000 0.00 0.00 45.50 4.34
3434 7411 8.175431 TGTTTTATAGATACTAGGGGTCTAGGG 58.825 40.741 0.00 0.00 45.50 3.53
3435 7412 9.597681 TTGTTTTATAGATACTAGGGGTCTAGG 57.402 37.037 0.00 0.00 45.50 3.02
3437 7414 9.597681 CCTTGTTTTATAGATACTAGGGGTCTA 57.402 37.037 0.00 0.00 33.14 2.59
3438 7415 7.513091 CCCTTGTTTTATAGATACTAGGGGTCT 59.487 40.741 16.01 0.00 45.43 3.85
3439 7416 7.677892 CCCTTGTTTTATAGATACTAGGGGTC 58.322 42.308 16.01 0.00 45.43 4.46
3440 7417 7.628501 CCCTTGTTTTATAGATACTAGGGGT 57.371 40.000 16.01 0.00 45.43 4.95
3443 7420 7.074653 TGCCCCTTGTTTTATAGATACTAGG 57.925 40.000 0.00 0.00 35.46 3.02
3444 7421 7.162082 CCTGCCCCTTGTTTTATAGATACTAG 58.838 42.308 0.00 0.00 0.00 2.57
3445 7422 6.043938 CCCTGCCCCTTGTTTTATAGATACTA 59.956 42.308 0.00 0.00 0.00 1.82
3446 7423 5.163088 CCCTGCCCCTTGTTTTATAGATACT 60.163 44.000 0.00 0.00 0.00 2.12
3447 7424 5.070685 CCCTGCCCCTTGTTTTATAGATAC 58.929 45.833 0.00 0.00 0.00 2.24
3448 7425 4.447180 GCCCTGCCCCTTGTTTTATAGATA 60.447 45.833 0.00 0.00 0.00 1.98
3449 7426 3.691311 GCCCTGCCCCTTGTTTTATAGAT 60.691 47.826 0.00 0.00 0.00 1.98
3450 7427 2.357777 GCCCTGCCCCTTGTTTTATAGA 60.358 50.000 0.00 0.00 0.00 1.98
3451 7428 2.031870 GCCCTGCCCCTTGTTTTATAG 58.968 52.381 0.00 0.00 0.00 1.31
3452 7429 1.643811 AGCCCTGCCCCTTGTTTTATA 59.356 47.619 0.00 0.00 0.00 0.98
3453 7430 0.413434 AGCCCTGCCCCTTGTTTTAT 59.587 50.000 0.00 0.00 0.00 1.40
3454 7431 0.251608 GAGCCCTGCCCCTTGTTTTA 60.252 55.000 0.00 0.00 0.00 1.52
3455 7432 1.533994 GAGCCCTGCCCCTTGTTTT 60.534 57.895 0.00 0.00 0.00 2.43
3456 7433 2.118294 GAGCCCTGCCCCTTGTTT 59.882 61.111 0.00 0.00 0.00 2.83
3457 7434 4.351054 CGAGCCCTGCCCCTTGTT 62.351 66.667 0.00 0.00 0.00 2.83
3459 7436 2.478335 TTTACGAGCCCTGCCCCTTG 62.478 60.000 0.00 0.00 0.00 3.61
3460 7437 1.571773 ATTTACGAGCCCTGCCCCTT 61.572 55.000 0.00 0.00 0.00 3.95
3461 7438 2.001269 ATTTACGAGCCCTGCCCCT 61.001 57.895 0.00 0.00 0.00 4.79
3462 7439 1.823899 CATTTACGAGCCCTGCCCC 60.824 63.158 0.00 0.00 0.00 5.80
3463 7440 1.095807 GTCATTTACGAGCCCTGCCC 61.096 60.000 0.00 0.00 0.00 5.36
3464 7441 0.392461 TGTCATTTACGAGCCCTGCC 60.392 55.000 0.00 0.00 0.00 4.85
3465 7442 1.448985 TTGTCATTTACGAGCCCTGC 58.551 50.000 0.00 0.00 0.00 4.85
3466 7443 3.809832 CCTATTGTCATTTACGAGCCCTG 59.190 47.826 0.00 0.00 0.00 4.45
3467 7444 3.744530 GCCTATTGTCATTTACGAGCCCT 60.745 47.826 0.00 0.00 0.00 5.19
3468 7445 2.548480 GCCTATTGTCATTTACGAGCCC 59.452 50.000 0.00 0.00 0.00 5.19
3469 7446 3.202906 TGCCTATTGTCATTTACGAGCC 58.797 45.455 0.00 0.00 0.00 4.70
3470 7447 4.875544 TTGCCTATTGTCATTTACGAGC 57.124 40.909 0.00 0.00 0.00 5.03
3471 7448 8.939586 CAATATTGCCTATTGTCATTTACGAG 57.060 34.615 1.74 0.00 41.18 4.18
3483 7460 7.749666 AGTGATCTACCACAATATTGCCTATT 58.250 34.615 15.48 0.00 39.42 1.73
3484 7461 7.321717 AGTGATCTACCACAATATTGCCTAT 57.678 36.000 15.48 1.76 39.42 2.57
3485 7462 6.747414 AGTGATCTACCACAATATTGCCTA 57.253 37.500 15.48 1.86 39.42 3.93
3486 7463 5.636903 AGTGATCTACCACAATATTGCCT 57.363 39.130 15.48 0.72 39.42 4.75
3487 7464 5.590259 ACAAGTGATCTACCACAATATTGCC 59.410 40.000 15.48 0.00 39.42 4.52
3488 7465 6.683974 ACAAGTGATCTACCACAATATTGC 57.316 37.500 15.48 0.00 39.42 3.56
3489 7466 8.948631 AGTACAAGTGATCTACCACAATATTG 57.051 34.615 14.01 14.01 39.42 1.90
3490 7467 9.959721 AAAGTACAAGTGATCTACCACAATATT 57.040 29.630 0.00 0.00 39.42 1.28
3494 7471 9.865321 GTATAAAGTACAAGTGATCTACCACAA 57.135 33.333 0.00 0.00 39.42 3.33
3495 7472 9.251440 AGTATAAAGTACAAGTGATCTACCACA 57.749 33.333 0.00 0.00 39.42 4.17
3496 7473 9.733219 GAGTATAAAGTACAAGTGATCTACCAC 57.267 37.037 0.00 0.00 37.32 4.16
3497 7474 8.910944 GGAGTATAAAGTACAAGTGATCTACCA 58.089 37.037 0.00 0.00 0.00 3.25
3498 7475 8.910944 TGGAGTATAAAGTACAAGTGATCTACC 58.089 37.037 0.00 0.00 0.00 3.18
3501 7478 8.643324 GGATGGAGTATAAAGTACAAGTGATCT 58.357 37.037 0.00 0.00 0.00 2.75
3502 7479 7.873505 GGGATGGAGTATAAAGTACAAGTGATC 59.126 40.741 0.00 0.00 0.00 2.92
3503 7480 7.347222 TGGGATGGAGTATAAAGTACAAGTGAT 59.653 37.037 0.00 0.00 0.00 3.06
3504 7481 6.670464 TGGGATGGAGTATAAAGTACAAGTGA 59.330 38.462 0.00 0.00 0.00 3.41
3505 7482 6.884832 TGGGATGGAGTATAAAGTACAAGTG 58.115 40.000 0.00 0.00 0.00 3.16
3506 7483 7.504926 TTGGGATGGAGTATAAAGTACAAGT 57.495 36.000 0.00 0.00 0.00 3.16
3507 7484 8.980481 ATTTGGGATGGAGTATAAAGTACAAG 57.020 34.615 0.00 0.00 0.00 3.16
3517 7494 9.707957 TGTTTGTATTAATTTGGGATGGAGTAT 57.292 29.630 0.00 0.00 0.00 2.12
3518 7495 8.962679 GTGTTTGTATTAATTTGGGATGGAGTA 58.037 33.333 0.00 0.00 0.00 2.59
3519 7496 7.453126 TGTGTTTGTATTAATTTGGGATGGAGT 59.547 33.333 0.00 0.00 0.00 3.85
3520 7497 7.835822 TGTGTTTGTATTAATTTGGGATGGAG 58.164 34.615 0.00 0.00 0.00 3.86
3521 7498 7.782897 TGTGTTTGTATTAATTTGGGATGGA 57.217 32.000 0.00 0.00 0.00 3.41
3522 7499 7.064490 GCTTGTGTTTGTATTAATTTGGGATGG 59.936 37.037 0.00 0.00 0.00 3.51
3523 7500 7.601886 TGCTTGTGTTTGTATTAATTTGGGATG 59.398 33.333 0.00 0.00 0.00 3.51
3524 7501 7.675062 TGCTTGTGTTTGTATTAATTTGGGAT 58.325 30.769 0.00 0.00 0.00 3.85
3525 7502 7.055667 TGCTTGTGTTTGTATTAATTTGGGA 57.944 32.000 0.00 0.00 0.00 4.37
3526 7503 7.601886 TCATGCTTGTGTTTGTATTAATTTGGG 59.398 33.333 0.00 0.00 0.00 4.12
3527 7504 8.434661 GTCATGCTTGTGTTTGTATTAATTTGG 58.565 33.333 0.00 0.00 0.00 3.28
3528 7505 8.155294 CGTCATGCTTGTGTTTGTATTAATTTG 58.845 33.333 0.00 0.00 0.00 2.32
3529 7506 7.148820 GCGTCATGCTTGTGTTTGTATTAATTT 60.149 33.333 0.00 0.00 41.73 1.82
3530 7507 6.307800 GCGTCATGCTTGTGTTTGTATTAATT 59.692 34.615 0.00 0.00 41.73 1.40
3531 7508 5.799936 GCGTCATGCTTGTGTTTGTATTAAT 59.200 36.000 0.00 0.00 41.73 1.40
3532 7509 5.150683 GCGTCATGCTTGTGTTTGTATTAA 58.849 37.500 0.00 0.00 41.73 1.40
3533 7510 4.378978 GGCGTCATGCTTGTGTTTGTATTA 60.379 41.667 0.00 0.00 45.43 0.98
3534 7511 3.564511 GCGTCATGCTTGTGTTTGTATT 58.435 40.909 0.00 0.00 41.73 1.89
3535 7512 2.095263 GGCGTCATGCTTGTGTTTGTAT 60.095 45.455 0.00 0.00 45.43 2.29
3536 7513 1.265635 GGCGTCATGCTTGTGTTTGTA 59.734 47.619 0.00 0.00 45.43 2.41
3537 7514 0.030638 GGCGTCATGCTTGTGTTTGT 59.969 50.000 0.00 0.00 45.43 2.83
3538 7515 0.998226 CGGCGTCATGCTTGTGTTTG 60.998 55.000 0.00 0.00 45.43 2.93
3539 7516 1.282570 CGGCGTCATGCTTGTGTTT 59.717 52.632 0.00 0.00 45.43 2.83
3540 7517 2.616330 CCGGCGTCATGCTTGTGTT 61.616 57.895 6.01 0.00 45.43 3.32
3541 7518 3.049674 CCGGCGTCATGCTTGTGT 61.050 61.111 6.01 0.00 45.43 3.72
3542 7519 3.803082 CCCGGCGTCATGCTTGTG 61.803 66.667 6.01 0.00 45.43 3.33
3543 7520 2.252072 ATACCCGGCGTCATGCTTGT 62.252 55.000 6.01 0.00 45.43 3.16
3544 7521 1.095228 AATACCCGGCGTCATGCTTG 61.095 55.000 6.01 0.00 45.43 4.01
3545 7522 0.466543 TAATACCCGGCGTCATGCTT 59.533 50.000 6.01 0.00 45.43 3.91
3546 7523 0.685097 ATAATACCCGGCGTCATGCT 59.315 50.000 6.01 0.00 45.43 3.79
3547 7524 1.076332 GATAATACCCGGCGTCATGC 58.924 55.000 6.01 0.00 45.38 4.06
3548 7525 2.743636 AGATAATACCCGGCGTCATG 57.256 50.000 6.01 0.00 0.00 3.07
3549 7526 4.439700 CGAATAGATAATACCCGGCGTCAT 60.440 45.833 6.01 0.00 0.00 3.06
3550 7527 3.119743 CGAATAGATAATACCCGGCGTCA 60.120 47.826 6.01 0.00 0.00 4.35
3551 7528 3.127548 TCGAATAGATAATACCCGGCGTC 59.872 47.826 6.01 0.00 0.00 5.19
3552 7529 3.084039 TCGAATAGATAATACCCGGCGT 58.916 45.455 6.01 0.00 0.00 5.68
3553 7530 3.376234 TCTCGAATAGATAATACCCGGCG 59.624 47.826 0.00 0.00 0.00 6.46
3554 7531 4.639310 TCTCTCGAATAGATAATACCCGGC 59.361 45.833 0.00 0.00 32.41 6.13
3555 7532 5.881443 ACTCTCTCGAATAGATAATACCCGG 59.119 44.000 0.00 0.00 32.41 5.73
3556 7533 6.988622 ACTCTCTCGAATAGATAATACCCG 57.011 41.667 0.00 0.00 32.41 5.28
3557 7534 7.333921 TCGAACTCTCTCGAATAGATAATACCC 59.666 40.741 0.00 0.00 44.49 3.69
3558 7535 8.254178 TCGAACTCTCTCGAATAGATAATACC 57.746 38.462 0.00 0.00 44.49 2.73
3582 7559 3.126073 ACACGAGGTTTTACGAAGGTTC 58.874 45.455 0.00 0.00 0.00 3.62
3583 7560 3.126073 GACACGAGGTTTTACGAAGGTT 58.874 45.455 0.00 0.00 0.00 3.50
3584 7561 2.546584 GGACACGAGGTTTTACGAAGGT 60.547 50.000 0.00 0.00 0.00 3.50
3585 7562 2.064014 GGACACGAGGTTTTACGAAGG 58.936 52.381 0.00 0.00 0.00 3.46
3586 7563 3.022607 AGGACACGAGGTTTTACGAAG 57.977 47.619 0.00 0.00 0.00 3.79
3587 7564 3.457610 AAGGACACGAGGTTTTACGAA 57.542 42.857 0.00 0.00 0.00 3.85
3588 7565 4.789012 ATAAGGACACGAGGTTTTACGA 57.211 40.909 0.00 0.00 0.00 3.43
3589 7566 5.289434 GGTAATAAGGACACGAGGTTTTACG 59.711 44.000 0.00 0.00 0.00 3.18
3590 7567 6.165577 TGGTAATAAGGACACGAGGTTTTAC 58.834 40.000 0.00 0.00 0.00 2.01
3591 7568 6.357579 TGGTAATAAGGACACGAGGTTTTA 57.642 37.500 0.00 0.00 0.00 1.52
3592 7569 5.231702 TGGTAATAAGGACACGAGGTTTT 57.768 39.130 0.00 0.00 0.00 2.43
3593 7570 4.895668 TGGTAATAAGGACACGAGGTTT 57.104 40.909 0.00 0.00 0.00 3.27
3594 7571 5.019785 GATGGTAATAAGGACACGAGGTT 57.980 43.478 0.00 0.00 0.00 3.50
3595 7572 4.667519 GATGGTAATAAGGACACGAGGT 57.332 45.455 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.