AutoCloner

Multiple sequence alignment - TraesCS5D01G355600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G355600	chr5D	100.000	2669	0	0	1	2669	437218783	437216115	0.000000e+00	4929.0
1	TraesCS5D01G355600	chr5D	87.853	1169	111	10	527	1671	437288953	437287792	0.000000e+00	1343.0
2	TraesCS5D01G355600	chr5D	85.938	384	39	4	159	527	437289419	437289036	1.930000e-106	396.0
3	TraesCS5D01G355600	chr5D	85.311	354	41	9	1864	2209	522634201	522633851	3.270000e-94	355.0
4	TraesCS5D01G355600	chr5D	85.197	304	30	1	168	456	437242528	437242225	5.590000e-77	298.0
5	TraesCS5D01G355600	chr5D	91.071	56	4	1	72	126	421965355	421965410	1.020000e-09	75.0
6	TraesCS5D01G355600	chr5D	94.737	38	1	1	2442	2479	349878742	349878706	1.030000e-04	58.4
7	TraesCS5D01G355600	chr5A	89.233	1681	123	21	527	2183	552388875	552387229	0.000000e+00	2049.0
8	TraesCS5D01G355600	chr5A	88.085	1175	103	11	527	1671	552504563	552503396	0.000000e+00	1360.0
9	TraesCS5D01G355600	chr5A	88.856	341	23	4	168	493	552389320	552388980	3.200000e-109	405.0
10	TraesCS5D01G355600	chr5A	85.530	387	41	4	156	527	552505032	552504646	8.960000e-105	390.0
11	TraesCS5D01G355600	chr5A	85.393	89	9	3	441	527	322191774	322191688	3.660000e-14	89.8
12	TraesCS5D01G355600	chr5B	94.330	1023	29	3	569	1591	531401556	531400563	0.000000e+00	1541.0
13	TraesCS5D01G355600	chr5B	88.281	1169	106	9	527	1671	531511762	531510601	0.000000e+00	1371.0
14	TraesCS5D01G355600	chr5B	94.759	725	31	7	1949	2669	531400567	531399846	0.000000e+00	1122.0
15	TraesCS5D01G355600	chr5B	92.765	387	13	1	156	527	531406527	531406141	1.810000e-151	545.0
16	TraesCS5D01G355600	chr5B	86.305	387	38	4	156	527	531512231	531511845	8.900000e-110	407.0
17	TraesCS5D01G355600	chr5B	100.000	46	0	0	527	572	531406058	531406013	4.730000e-13	86.1
18	TraesCS5D01G355600	chr5B	91.667	60	3	1	71	128	54859395	54859336	6.120000e-12	82.4
19	TraesCS5D01G355600	chr6D	87.252	353	38	5	1864	2209	464534892	464534540	1.930000e-106	396.0
20	TraesCS5D01G355600	chr6D	86.080	352	39	6	1862	2210	140156878	140157222	1.170000e-98	370.0
21	TraesCS5D01G355600	chr6D	91.228	57	3	2	74	128	98747484	98747428	2.850000e-10	76.8
22	TraesCS5D01G355600	chr7D	87.353	340	36	2	530	862	6961659	6961320	1.500000e-102	383.0
23	TraesCS5D01G355600	chr7D	72.776	371	64	29	192	535	629337719	629337359	1.020000e-14	91.6
24	TraesCS5D01G355600	chr7D	92.157	51	4	0	71	121	612706602	612706552	3.690000e-09	73.1
25	TraesCS5D01G355600	chr4B	87.032	347	34	8	1867	2209	34875357	34875018	5.390000e-102	381.0
26	TraesCS5D01G355600	chr4B	85.674	356	42	7	1862	2209	252980538	252980184	1.510000e-97	366.0
27	TraesCS5D01G355600	chr3D	87.462	327	34	6	1862	2185	45408124	45408446	1.170000e-98	370.0
28	TraesCS5D01G355600	chr4D	85.593	354	41	6	1864	2209	23075243	23074892	1.950000e-96	363.0
29	TraesCS5D01G355600	chr4D	100.000	30	0	0	96	125	26526436	26526465	3.710000e-04	56.5
30	TraesCS5D01G355600	chrUn	74.412	340	52	27	182	496	318738591	318738262	2.170000e-21	113.0
31	TraesCS5D01G355600	chrUn	84.932	73	11	0	192	264	187417566	187417494	1.020000e-09	75.0
32	TraesCS5D01G355600	chrUn	84.932	73	11	0	192	264	187446781	187446709	1.020000e-09	75.0
33	TraesCS5D01G355600	chrUn	82.927	82	14	0	183	264	234833855	234833936	1.020000e-09	75.0
34	TraesCS5D01G355600	chrUn	84.932	73	11	0	192	264	281883312	281883240	1.020000e-09	75.0
35	TraesCS5D01G355600	chr7B	74.412	340	52	27	182	496	732143192	732143521	2.170000e-21	113.0
36	TraesCS5D01G355600	chr7B	74.412	340	52	27	182	496	732150165	732150494	2.170000e-21	113.0
37	TraesCS5D01G355600	chr7B	89.474	76	8	0	189	264	732129896	732129971	2.190000e-16	97.1
38	TraesCS5D01G355600	chr7B	89.474	76	8	0	189	264	732178783	732178858	2.190000e-16	97.1
39	TraesCS5D01G355600	chr1B	93.750	64	4	0	71	134	223787616	223787679	2.190000e-16	97.1
40	TraesCS5D01G355600	chr2B	86.517	89	8	3	441	527	1246333	1246247	7.870000e-16	95.3
41	TraesCS5D01G355600	chr3A	86.047	86	8	3	444	527	478687135	478687052	3.660000e-14	89.8
42	TraesCS5D01G355600	chr7A	72.441	381	68	29	182	535	725234268	725233898	1.320000e-13	87.9
43	TraesCS5D01G355600	chr1A	90.909	44	3	1	87	129	535281762	535281719	1.030000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G355600	chr5D	437216115	437218783	2668	True	4929.00	4929	100.0000	1	2669	1	chr5D.!!$R2	2668
1	TraesCS5D01G355600	chr5D	437287792	437289419	1627	True	869.50	1343	86.8955	159	1671	2	chr5D.!!$R5	1512
2	TraesCS5D01G355600	chr5A	552387229	552389320	2091	True	1227.00	2049	89.0445	168	2183	2	chr5A.!!$R2	2015
3	TraesCS5D01G355600	chr5A	552503396	552505032	1636	True	875.00	1360	86.8075	156	1671	2	chr5A.!!$R3	1515
4	TraesCS5D01G355600	chr5B	531399846	531401556	1710	True	1331.50	1541	94.5445	569	2669	2	chr5B.!!$R2	2100
5	TraesCS5D01G355600	chr5B	531510601	531512231	1630	True	889.00	1371	87.2930	156	1671	2	chr5B.!!$R4	1515
6	TraesCS5D01G355600	chr5B	531406013	531406527	514	True	315.55	545	96.3825	156	572	2	chr5B.!!$R3	416

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
33	34	0.924777	CGAACCCGCCAAAACAAAAC	59.075	50.0	0.0	0.0	0.0	2.43	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1999	2144	1.322442	GTCTTTTCTGCACAGCCCTT	58.678	50.0	0.0	0.0	0.0	3.95	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	2.434185	GATCACCAGCACGGCGAA	60.434	61.111	16.62	0.00	39.03	4.70
18	19	2.740714	GATCACCAGCACGGCGAAC	61.741	63.158	16.62	4.57	39.03	3.95
19	20	4.980805	TCACCAGCACGGCGAACC	62.981	66.667	16.62	0.25	39.03	3.62
32	33	3.347411	CGAACCCGCCAAAACAAAA	57.653	47.368	0.00	0.00	0.00	2.44
33	34	0.924777	CGAACCCGCCAAAACAAAAC	59.075	50.000	0.00	0.00	0.00	2.43
34	35	1.470112	CGAACCCGCCAAAACAAAACT	60.470	47.619	0.00	0.00	0.00	2.66
35	36	1.930503	GAACCCGCCAAAACAAAACTG	59.069	47.619	0.00	0.00	0.00	3.16
36	37	1.187087	ACCCGCCAAAACAAAACTGA	58.813	45.000	0.00	0.00	0.00	3.41
37	38	1.760029	ACCCGCCAAAACAAAACTGAT	59.240	42.857	0.00	0.00	0.00	2.90
38	39	2.959707	ACCCGCCAAAACAAAACTGATA	59.040	40.909	0.00	0.00	0.00	2.15
39	40	3.576550	ACCCGCCAAAACAAAACTGATAT	59.423	39.130	0.00	0.00	0.00	1.63
40	41	4.767928	ACCCGCCAAAACAAAACTGATATA	59.232	37.500	0.00	0.00	0.00	0.86
41	42	5.105917	ACCCGCCAAAACAAAACTGATATAG	60.106	40.000	0.00	0.00	0.00	1.31
42	43	5.105917	CCCGCCAAAACAAAACTGATATAGT	60.106	40.000	0.00	0.00	42.89	2.12
43	44	6.094325	CCCGCCAAAACAAAACTGATATAGTA	59.906	38.462	0.00	0.00	39.18	1.82
44	45	7.201785	CCCGCCAAAACAAAACTGATATAGTAT	60.202	37.037	0.00	0.00	39.18	2.12
45	46	7.855904	CCGCCAAAACAAAACTGATATAGTATC	59.144	37.037	0.00	0.00	39.18	2.24
46	47	8.394877	CGCCAAAACAAAACTGATATAGTATCA	58.605	33.333	0.29	0.29	39.18	2.15
115	116	8.606040	TGATTGCGTATCATTTCATTGATAGA	57.394	30.769	0.00	0.00	38.83	1.98
116	117	9.223099	TGATTGCGTATCATTTCATTGATAGAT	57.777	29.630	0.00	0.00	38.83	1.98
119	120	9.927668	TTGCGTATCATTTCATTGATAGATAGA	57.072	29.630	0.00	0.00	38.83	1.98
120	121	9.927668	TGCGTATCATTTCATTGATAGATAGAA	57.072	29.630	0.00	0.00	38.83	2.10
142	143	8.871629	AGAAGAGAACAAGAGTAGTCTATCAA	57.128	34.615	0.00	0.00	30.45	2.57
143	144	9.474313	AGAAGAGAACAAGAGTAGTCTATCAAT	57.526	33.333	0.00	0.00	30.45	2.57
144	145	9.730420	GAAGAGAACAAGAGTAGTCTATCAATC	57.270	37.037	0.00	0.00	30.45	2.67
145	146	9.474313	AAGAGAACAAGAGTAGTCTATCAATCT	57.526	33.333	0.00	1.35	30.45	2.40
146	147	9.474313	AGAGAACAAGAGTAGTCTATCAATCTT	57.526	33.333	0.00	0.00	30.45	2.40
149	150	9.862371	GAACAAGAGTAGTCTATCAATCTTTCA	57.138	33.333	0.00	0.00	30.45	2.69
1446	1572	4.241555	GTGCGGCGGATGGAGGAT	62.242	66.667	9.78	0.00	0.00	3.24
1482	1608	3.512516	AGGTACTACGCGCGGGAC	61.513	66.667	35.22	23.21	36.02	4.46
1595	1724	2.348888	GCGACCCGAGGAGGAAGAA	61.349	63.158	0.00	0.00	45.00	2.52
1677	1806	1.547820	GACATCCAGTGACTGAGCTGA	59.452	52.381	15.33	2.73	34.87	4.26
1705	1834	1.871080	CCGTTGTGAGAGAAGTTGCT	58.129	50.000	0.00	0.00	0.00	3.91
1878	2023	1.486211	TTTGGAGGCCGGTTTTTGAA	58.514	45.000	1.90	0.00	0.00	2.69
1884	2029	4.101119	TGGAGGCCGGTTTTTGAAAAATTA	59.899	37.500	6.35	0.00	0.00	1.40
2026	2171	4.543692	CTGTGCAGAAAAGACAAATCTGG	58.456	43.478	4.39	0.00	40.68	3.86
2078	2223	2.421388	CCCAGGCCATGAATTCGTCTTA	60.421	50.000	5.01	0.00	0.00	2.10
2082	2227	5.530915	CCAGGCCATGAATTCGTCTTATTTA	59.469	40.000	5.01	0.00	0.00	1.40
2083	2228	6.430451	CAGGCCATGAATTCGTCTTATTTAC	58.570	40.000	5.01	0.00	0.00	2.01
2085	2230	6.260936	AGGCCATGAATTCGTCTTATTTACAG	59.739	38.462	5.01	0.00	0.00	2.74
2164	2311	9.796120	CCTTGTTTACTTGTAGAATTGTTTTCA	57.204	29.630	0.00	0.00	0.00	2.69
2240	2389	5.864628	AACGCCTCACTCTTTTCTTTATC	57.135	39.130	0.00	0.00	0.00	1.75
2255	2404	9.372369	CTTTTCTTTATCTCAAATCTACTCCGT	57.628	33.333	0.00	0.00	0.00	4.69
2313	2462	3.142174	GCTGTTTCTGTAGCTTTGACCT	58.858	45.455	0.00	0.00	36.99	3.85
2624	2776	1.523046	GGCCCATCATTGCATGCAA	59.477	52.632	33.57	33.57	40.47	4.08
2630	2782	2.223876	CCATCATTGCATGCAACCCTAC	60.224	50.000	34.10	0.00	38.88	3.18
2641	2793	1.772567	AACCCTACCACCAGTGCCA	60.773	57.895	0.00	0.00	0.00	4.92
2655	2807	6.238731	CCACCAGTGCCAGTATATAATTGTTG	60.239	42.308	0.00	0.00	0.00	3.33
2659	2811	7.360353	CCAGTGCCAGTATATAATTGTTGATCG	60.360	40.741	0.00	0.00	0.00	3.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
14	15	0.924777	GTTTTGTTTTGGCGGGTTCG	59.075	50.000	0.00	0.00	39.81	3.95
15	16	1.930503	CAGTTTTGTTTTGGCGGGTTC	59.069	47.619	0.00	0.00	0.00	3.62
16	17	1.550976	TCAGTTTTGTTTTGGCGGGTT	59.449	42.857	0.00	0.00	0.00	4.11
17	18	1.187087	TCAGTTTTGTTTTGGCGGGT	58.813	45.000	0.00	0.00	0.00	5.28
18	19	2.524569	ATCAGTTTTGTTTTGGCGGG	57.475	45.000	0.00	0.00	0.00	6.13
19	20	5.949735	ACTATATCAGTTTTGTTTTGGCGG	58.050	37.500	0.00	0.00	31.59	6.13
20	21	8.394877	TGATACTATATCAGTTTTGTTTTGGCG	58.605	33.333	0.00	0.00	38.80	5.69
21	22	9.722056	CTGATACTATATCAGTTTTGTTTTGGC	57.278	33.333	14.98	0.00	40.34	4.52
22	23	9.722056	GCTGATACTATATCAGTTTTGTTTTGG	57.278	33.333	21.24	0.37	45.38	3.28
31	32	9.650539	CTGCTTAATGCTGATACTATATCAGTT	57.349	33.333	21.24	13.78	45.38	3.16
32	33	8.811017	ACTGCTTAATGCTGATACTATATCAGT	58.189	33.333	21.24	9.17	45.38	3.41
37	38	9.521841	AGACTACTGCTTAATGCTGATACTATA	57.478	33.333	9.55	0.00	42.27	1.31
38	39	8.415950	AGACTACTGCTTAATGCTGATACTAT	57.584	34.615	9.55	0.00	42.27	2.12
39	40	7.825331	AGACTACTGCTTAATGCTGATACTA	57.175	36.000	9.55	0.00	42.27	1.82
40	41	6.723298	AGACTACTGCTTAATGCTGATACT	57.277	37.500	9.55	0.00	42.27	2.12
41	42	8.300286	TGATAGACTACTGCTTAATGCTGATAC	58.700	37.037	9.55	0.00	42.27	2.24
42	43	8.409358	TGATAGACTACTGCTTAATGCTGATA	57.591	34.615	9.55	1.46	42.27	2.15
43	44	7.295322	TGATAGACTACTGCTTAATGCTGAT	57.705	36.000	9.55	0.66	42.27	2.90
44	45	6.715347	TGATAGACTACTGCTTAATGCTGA	57.285	37.500	9.55	0.00	42.27	4.26
45	46	7.959689	ATTGATAGACTACTGCTTAATGCTG	57.040	36.000	0.00	0.00	44.70	4.41
46	47	8.970859	AAATTGATAGACTACTGCTTAATGCT	57.029	30.769	0.00	0.00	43.37	3.79
93	94	9.927668	TCTATCTATCAATGAAATGATACGCAA	57.072	29.630	0.00	0.00	40.44	4.85
94	95	9.927668	TTCTATCTATCAATGAAATGATACGCA	57.072	29.630	0.00	0.00	40.44	5.24
116	117	9.961264	TTGATAGACTACTCTTGTTCTCTTCTA	57.039	33.333	0.00	0.00	0.00	2.10
117	118	8.871629	TTGATAGACTACTCTTGTTCTCTTCT	57.128	34.615	0.00	0.00	0.00	2.85
118	119	9.730420	GATTGATAGACTACTCTTGTTCTCTTC	57.270	37.037	0.00	0.00	0.00	2.87
119	120	9.474313	AGATTGATAGACTACTCTTGTTCTCTT	57.526	33.333	0.00	0.00	0.00	2.85
120	121	9.474313	AAGATTGATAGACTACTCTTGTTCTCT	57.526	33.333	0.00	0.00	0.00	3.10
123	124	9.862371	TGAAAGATTGATAGACTACTCTTGTTC	57.138	33.333	0.00	0.00	0.00	3.18
134	135	9.907576	CGTTAGTTGATTGAAAGATTGATAGAC	57.092	33.333	0.00	0.00	0.00	2.59
135	136	8.604035	GCGTTAGTTGATTGAAAGATTGATAGA	58.396	33.333	0.00	0.00	0.00	1.98
136	137	7.852945	GGCGTTAGTTGATTGAAAGATTGATAG	59.147	37.037	0.00	0.00	0.00	2.08
137	138	7.465379	CGGCGTTAGTTGATTGAAAGATTGATA	60.465	37.037	0.00	0.00	0.00	2.15
138	139	6.555315	GGCGTTAGTTGATTGAAAGATTGAT	58.445	36.000	0.00	0.00	0.00	2.57
139	140	5.390461	CGGCGTTAGTTGATTGAAAGATTGA	60.390	40.000	0.00	0.00	0.00	2.57
140	141	4.788100	CGGCGTTAGTTGATTGAAAGATTG	59.212	41.667	0.00	0.00	0.00	2.67
141	142	4.693566	TCGGCGTTAGTTGATTGAAAGATT	59.306	37.500	6.85	0.00	0.00	2.40
142	143	4.092968	GTCGGCGTTAGTTGATTGAAAGAT	59.907	41.667	6.85	0.00	0.00	2.40
143	144	3.430895	GTCGGCGTTAGTTGATTGAAAGA	59.569	43.478	6.85	0.00	0.00	2.52
144	145	3.185594	TGTCGGCGTTAGTTGATTGAAAG	59.814	43.478	6.85	0.00	0.00	2.62
145	146	3.132160	TGTCGGCGTTAGTTGATTGAAA	58.868	40.909	6.85	0.00	0.00	2.69
146	147	2.756829	TGTCGGCGTTAGTTGATTGAA	58.243	42.857	6.85	0.00	0.00	2.69
147	148	2.442212	TGTCGGCGTTAGTTGATTGA	57.558	45.000	6.85	0.00	0.00	2.57
148	149	3.416277	CATTGTCGGCGTTAGTTGATTG	58.584	45.455	6.85	0.00	0.00	2.67
149	150	2.418628	CCATTGTCGGCGTTAGTTGATT	59.581	45.455	6.85	0.00	0.00	2.57
150	151	2.006888	CCATTGTCGGCGTTAGTTGAT	58.993	47.619	6.85	0.00	0.00	2.57
151	152	1.001068	TCCATTGTCGGCGTTAGTTGA	59.999	47.619	6.85	0.00	0.00	3.18
152	153	1.434555	TCCATTGTCGGCGTTAGTTG	58.565	50.000	6.85	0.00	0.00	3.16
153	154	2.277084	GATCCATTGTCGGCGTTAGTT	58.723	47.619	6.85	0.00	0.00	2.24
154	155	1.472728	GGATCCATTGTCGGCGTTAGT	60.473	52.381	6.95	0.00	0.00	2.24
427	443	2.261361	CTGACGCACCCATCGACA	59.739	61.111	0.00	0.00	0.00	4.35
592	691	4.250305	CTGGGAATACCGCCGGGG	62.250	72.222	12.43	12.43	44.64	5.73
681	780	2.335712	GCTTTCCCTTGACCAGCGG	61.336	63.158	0.00	0.00	0.00	5.52
720	819	2.890847	ATCTCGAAGGCCGACTTGCG	62.891	60.000	0.00	0.00	43.23	4.85
1032	1131	2.432628	GACACGGACCTCGCCAAG	60.433	66.667	0.00	0.00	43.89	3.61
1035	1134	4.773117	GACGACACGGACCTCGCC	62.773	72.222	1.75	0.00	43.89	5.54
1595	1724	3.424105	GGCCCTGCCCCTTCATCT	61.424	66.667	0.00	0.00	44.06	2.90
1743	1872	5.192927	TGCTCTCTTCACTCCAAAAGAAAA	58.807	37.500	0.00	0.00	31.45	2.29
1745	1874	4.422073	TGCTCTCTTCACTCCAAAAGAA	57.578	40.909	0.00	0.00	31.45	2.52
1747	1876	4.082895	CCAATGCTCTCTTCACTCCAAAAG	60.083	45.833	0.00	0.00	0.00	2.27
1752	1881	2.289945	ACACCAATGCTCTCTTCACTCC	60.290	50.000	0.00	0.00	0.00	3.85
1753	1882	2.740981	CACACCAATGCTCTCTTCACTC	59.259	50.000	0.00	0.00	0.00	3.51
1754	1883	2.369860	TCACACCAATGCTCTCTTCACT	59.630	45.455	0.00	0.00	0.00	3.41
1755	1884	2.771089	TCACACCAATGCTCTCTTCAC	58.229	47.619	0.00	0.00	0.00	3.18
1756	1885	3.490439	TTCACACCAATGCTCTCTTCA	57.510	42.857	0.00	0.00	0.00	3.02
1757	1886	4.067896	TCTTTCACACCAATGCTCTCTTC	58.932	43.478	0.00	0.00	0.00	2.87
1758	1887	4.070716	CTCTTTCACACCAATGCTCTCTT	58.929	43.478	0.00	0.00	0.00	2.85
1759	1888	3.326006	TCTCTTTCACACCAATGCTCTCT	59.674	43.478	0.00	0.00	0.00	3.10
1760	1889	3.668447	TCTCTTTCACACCAATGCTCTC	58.332	45.455	0.00	0.00	0.00	3.20
1761	1890	3.777106	TCTCTTTCACACCAATGCTCT	57.223	42.857	0.00	0.00	0.00	4.09
1762	1891	3.365767	GCTTCTCTTTCACACCAATGCTC	60.366	47.826	0.00	0.00	0.00	4.26
1763	1892	2.555757	GCTTCTCTTTCACACCAATGCT	59.444	45.455	0.00	0.00	0.00	3.79
1764	1893	2.666619	CGCTTCTCTTTCACACCAATGC	60.667	50.000	0.00	0.00	0.00	3.56
1842	1971	3.639094	TCCAAAAGGGATTTTCGCAAAGA	59.361	39.130	0.00	0.00	42.15	2.52
1999	2144	1.322442	GTCTTTTCTGCACAGCCCTT	58.678	50.000	0.00	0.00	0.00	3.95
2026	2171	8.682710	TGAATAGTATCATGTGTTAAAAAGCCC	58.317	33.333	0.00	0.00	0.00	5.19
2078	2223	4.079253	ACCTTGAAATGCGGTCTGTAAAT	58.921	39.130	0.00	0.00	0.00	1.40
2082	2227	2.851263	TACCTTGAAATGCGGTCTGT	57.149	45.000	0.00	0.00	32.36	3.41
2083	2228	4.701956	AAATACCTTGAAATGCGGTCTG	57.298	40.909	0.00	0.00	32.36	3.51
2085	2230	7.027778	AGATAAAATACCTTGAAATGCGGTC	57.972	36.000	0.00	0.00	32.36	4.79
2220	2369	5.171476	TGAGATAAAGAAAAGAGTGAGGCG	58.829	41.667	0.00	0.00	0.00	5.52
2421	2570	8.498054	TCAAAATCAAGCCTTTCTATGTCTAG	57.502	34.615	0.00	0.00	0.00	2.43
2562	2714	7.828717	ACAAAGATTGTTGACCAAAGGAATTTT	59.171	29.630	0.00	0.00	42.22	1.82
2566	2718	5.163457	GGACAAAGATTGTTGACCAAAGGAA	60.163	40.000	0.00	0.00	45.52	3.36
2624	2776	2.122144	TGGCACTGGTGGTAGGGT	60.122	61.111	2.84	0.00	0.00	4.34
2630	2782	5.376625	ACAATTATATACTGGCACTGGTGG	58.623	41.667	2.84	0.00	0.00	4.61
2641	2793	4.326278	CGCCGCGATCAACAATTATATACT	59.674	41.667	8.23	0.00	0.00	2.12

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.