Multiple sequence alignment - TraesCS5D01G355300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G355300 chr5D 100.000 2931 0 0 1 2931 437038296 437041226 0.000000e+00 5413.0
1 TraesCS5D01G355300 chr5D 86.108 799 86 12 925 1708 238780321 238779533 0.000000e+00 837.0
2 TraesCS5D01G355300 chr5D 86.132 786 82 15 925 1708 437065101 437065861 0.000000e+00 822.0
3 TraesCS5D01G355300 chr5D 85.064 703 93 9 1825 2519 437065936 437066634 0.000000e+00 706.0
4 TraesCS5D01G355300 chr5D 83.144 706 82 25 1819 2519 238779508 238778835 6.940000e-171 610.0
5 TraesCS5D01G355300 chr5D 96.774 341 7 4 2591 2931 482327672 482327336 1.520000e-157 566.0
6 TraesCS5D01G355300 chr5D 96.491 342 9 3 2591 2931 48038650 48038989 1.970000e-156 562.0
7 TraesCS5D01G355300 chr5D 96.491 342 8 4 2591 2931 79115847 79116185 1.970000e-156 562.0
8 TraesCS5D01G355300 chr5D 92.308 195 15 0 619 813 238783327 238783133 8.000000e-71 278.0
9 TraesCS5D01G355300 chr5D 92.708 192 14 0 621 812 437063267 437063458 8.000000e-71 278.0
10 TraesCS5D01G355300 chr5D 93.103 58 3 1 2541 2597 238778765 238778822 1.870000e-12 84.2
11 TraesCS5D01G355300 chr5B 93.921 2336 107 11 207 2519 531219519 531221842 0.000000e+00 3494.0
12 TraesCS5D01G355300 chr5B 84.872 780 87 16 925 1700 531298262 531299014 0.000000e+00 758.0
13 TraesCS5D01G355300 chr5B 86.111 720 81 16 1810 2519 531299092 531299802 0.000000e+00 758.0
14 TraesCS5D01G355300 chr5B 88.066 243 17 3 619 861 531294963 531295193 8.000000e-71 278.0
15 TraesCS5D01G355300 chr5B 86.207 145 12 2 71 209 531219321 531219463 1.820000e-32 150.0
16 TraesCS5D01G355300 chr5B 98.462 65 1 0 2533 2597 531221919 531221855 6.640000e-22 115.0
17 TraesCS5D01G355300 chr5A 92.934 2038 112 18 486 2519 552314168 552316177 0.000000e+00 2937.0
18 TraesCS5D01G355300 chr5A 85.750 807 87 15 918 1708 315333685 315334479 0.000000e+00 828.0
19 TraesCS5D01G355300 chr5A 85.378 807 84 22 905 1708 552374814 552375589 0.000000e+00 806.0
20 TraesCS5D01G355300 chr5A 85.755 702 88 11 1825 2519 552375664 552376360 0.000000e+00 732.0
21 TraesCS5D01G355300 chr5A 82.812 704 86 18 1819 2519 315334506 315335177 5.410000e-167 597.0
22 TraesCS5D01G355300 chr5A 84.810 316 29 7 559 861 552372215 552372524 1.710000e-77 300.0
23 TraesCS5D01G355300 chr5A 92.308 195 15 0 619 813 315332765 315332959 8.000000e-71 278.0
24 TraesCS5D01G355300 chr5A 88.085 235 16 6 207 430 552313947 552314180 4.810000e-68 268.0
25 TraesCS5D01G355300 chr5A 92.486 173 9 2 27 195 552313722 552313894 8.110000e-61 244.0
26 TraesCS5D01G355300 chr5A 98.462 65 1 0 2533 2597 552316254 552316190 6.640000e-22 115.0
27 TraesCS5D01G355300 chr6D 97.067 341 8 2 2591 2931 78839658 78839320 9.110000e-160 573.0
28 TraesCS5D01G355300 chr6D 97.076 342 7 3 2591 2931 471319395 471319056 9.110000e-160 573.0
29 TraesCS5D01G355300 chr7D 97.067 341 7 3 2591 2931 13308817 13308480 3.280000e-159 571.0
30 TraesCS5D01G355300 chr7D 96.784 342 7 4 2591 2931 627809426 627809088 4.240000e-158 568.0
31 TraesCS5D01G355300 chr2D 96.793 343 7 4 2591 2931 6982849 6983189 1.180000e-158 569.0
32 TraesCS5D01G355300 chr4D 96.774 341 7 3 2591 2931 509682132 509682468 1.520000e-157 566.0
33 TraesCS5D01G355300 chr4D 75.725 552 124 8 933 1482 108218488 108217945 4.810000e-68 268.0
34 TraesCS5D01G355300 chr4D 85.204 196 29 0 619 814 108218830 108218635 4.950000e-48 202.0
35 TraesCS5D01G355300 chr4B 76.071 560 120 11 927 1482 168160229 168160778 2.220000e-71 279.0
36 TraesCS5D01G355300 chr4B 80.075 266 47 4 2046 2308 168184825 168185087 2.980000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G355300 chr5D 437038296 437041226 2930 False 5413.000000 5413 100.000000 1 2931 1 chr5D.!!$F4 2930
1 TraesCS5D01G355300 chr5D 437063267 437066634 3367 False 602.000000 822 87.968000 621 2519 3 chr5D.!!$F5 1898
2 TraesCS5D01G355300 chr5D 238778835 238783327 4492 True 575.000000 837 87.186667 619 2519 3 chr5D.!!$R2 1900
3 TraesCS5D01G355300 chr5B 531219321 531221842 2521 False 1822.000000 3494 90.064000 71 2519 2 chr5B.!!$F1 2448
4 TraesCS5D01G355300 chr5B 531294963 531299802 4839 False 598.000000 758 86.349667 619 2519 3 chr5B.!!$F2 1900
5 TraesCS5D01G355300 chr5A 552313722 552316177 2455 False 1149.666667 2937 91.168333 27 2519 3 chr5A.!!$F2 2492
6 TraesCS5D01G355300 chr5A 552372215 552376360 4145 False 612.666667 806 85.314333 559 2519 3 chr5A.!!$F3 1960
7 TraesCS5D01G355300 chr5A 315332765 315335177 2412 False 567.666667 828 86.956667 619 2519 3 chr5A.!!$F1 1900
8 TraesCS5D01G355300 chr4D 108217945 108218830 885 True 235.000000 268 80.464500 619 1482 2 chr4D.!!$R1 863
9 TraesCS5D01G355300 chr4B 168160229 168160778 549 False 279.000000 279 76.071000 927 1482 1 chr4B.!!$F1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 139 0.032017 AGGATAGAGCCCGGTGAAGT 60.032 55.0 0.0 0.0 0.0 3.01 F
1101 7343 0.032615 AGCCTCTCCTCGTCTCCATT 60.033 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 7885 0.463833 CCCGGTAAGGAGCACCAATC 60.464 60.0 2.07 0.0 45.0 2.67 R
2746 9042 0.108329 ACTCGGATGCGGATTTTCGT 60.108 50.0 6.82 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.113562 TAGCGGGCGGTTTTTGGT 59.886 55.556 0.00 0.00 0.00 3.67
18 19 1.528776 TAGCGGGCGGTTTTTGGTT 60.529 52.632 0.00 0.00 0.00 3.67
19 20 1.517210 TAGCGGGCGGTTTTTGGTTC 61.517 55.000 0.00 0.00 0.00 3.62
20 21 2.852180 GCGGGCGGTTTTTGGTTCT 61.852 57.895 0.00 0.00 0.00 3.01
21 22 1.737201 CGGGCGGTTTTTGGTTCTT 59.263 52.632 0.00 0.00 0.00 2.52
22 23 0.596341 CGGGCGGTTTTTGGTTCTTG 60.596 55.000 0.00 0.00 0.00 3.02
23 24 0.878523 GGGCGGTTTTTGGTTCTTGC 60.879 55.000 0.00 0.00 0.00 4.01
24 25 0.104120 GGCGGTTTTTGGTTCTTGCT 59.896 50.000 0.00 0.00 0.00 3.91
25 26 1.338655 GGCGGTTTTTGGTTCTTGCTA 59.661 47.619 0.00 0.00 0.00 3.49
38 39 5.221843 TGGTTCTTGCTATTGTTCCTACTGT 60.222 40.000 0.00 0.00 0.00 3.55
57 58 3.767673 CTGTCCCCAGTAGTTAGCTGTTA 59.232 47.826 0.00 0.00 33.80 2.41
137 139 0.032017 AGGATAGAGCCCGGTGAAGT 60.032 55.000 0.00 0.00 0.00 3.01
194 205 9.736414 TCGCCTGGATTATATATATACTCCTAC 57.264 37.037 27.04 19.12 38.27 3.18
283 352 5.919141 AGCTTTTGATATAGTAAGTACGGCG 59.081 40.000 4.80 4.80 0.00 6.46
302 371 4.274950 CGGCGAATTAATAACTGTTGGGAT 59.725 41.667 0.00 0.00 0.00 3.85
361 433 1.682740 ACCTTGTTTAACCGGTGTGG 58.317 50.000 8.52 5.53 46.41 4.17
432 522 2.918571 TGCTCTCTCCAAAGCAACG 58.081 52.632 0.00 0.00 45.09 4.10
433 523 1.230635 TGCTCTCTCCAAAGCAACGC 61.231 55.000 0.00 0.00 45.09 4.84
434 524 1.784062 CTCTCTCCAAAGCAACGCG 59.216 57.895 3.53 3.53 0.00 6.01
435 525 0.946221 CTCTCTCCAAAGCAACGCGT 60.946 55.000 5.58 5.58 0.00 6.01
436 526 1.205064 CTCTCCAAAGCAACGCGTG 59.795 57.895 14.98 8.57 0.00 5.34
446 536 2.650196 AACGCGTGCGGGTTAGTA 59.350 55.556 22.03 0.00 46.88 1.82
447 537 1.216178 AACGCGTGCGGGTTAGTAT 59.784 52.632 22.03 1.65 46.88 2.12
448 538 1.079875 AACGCGTGCGGGTTAGTATG 61.080 55.000 22.03 0.00 46.88 2.39
449 539 1.517694 CGCGTGCGGGTTAGTATGT 60.518 57.895 6.30 0.00 35.56 2.29
450 540 1.079875 CGCGTGCGGGTTAGTATGTT 61.080 55.000 6.30 0.00 35.56 2.71
451 541 1.081094 GCGTGCGGGTTAGTATGTTT 58.919 50.000 0.00 0.00 0.00 2.83
452 542 1.201987 GCGTGCGGGTTAGTATGTTTG 60.202 52.381 0.00 0.00 0.00 2.93
453 543 1.395608 CGTGCGGGTTAGTATGTTTGG 59.604 52.381 0.00 0.00 0.00 3.28
454 544 2.702261 GTGCGGGTTAGTATGTTTGGA 58.298 47.619 0.00 0.00 0.00 3.53
455 545 3.275999 GTGCGGGTTAGTATGTTTGGAT 58.724 45.455 0.00 0.00 0.00 3.41
456 546 3.311596 GTGCGGGTTAGTATGTTTGGATC 59.688 47.826 0.00 0.00 0.00 3.36
457 547 3.055021 TGCGGGTTAGTATGTTTGGATCA 60.055 43.478 0.00 0.00 0.00 2.92
458 548 3.311596 GCGGGTTAGTATGTTTGGATCAC 59.688 47.826 0.00 0.00 0.00 3.06
459 549 3.875134 CGGGTTAGTATGTTTGGATCACC 59.125 47.826 0.00 0.00 0.00 4.02
460 550 4.624364 CGGGTTAGTATGTTTGGATCACCA 60.624 45.833 0.00 0.00 45.34 4.17
461 551 4.638865 GGGTTAGTATGTTTGGATCACCAC 59.361 45.833 0.00 0.00 46.80 4.16
462 552 5.250200 GGTTAGTATGTTTGGATCACCACA 58.750 41.667 0.00 0.00 46.80 4.17
463 553 5.885912 GGTTAGTATGTTTGGATCACCACAT 59.114 40.000 0.00 1.71 46.80 3.21
464 554 6.377146 GGTTAGTATGTTTGGATCACCACATT 59.623 38.462 7.86 0.00 46.80 2.71
465 555 7.554835 GGTTAGTATGTTTGGATCACCACATTA 59.445 37.037 7.86 0.00 46.80 1.90
466 556 8.952278 GTTAGTATGTTTGGATCACCACATTAA 58.048 33.333 7.86 1.42 46.80 1.40
467 557 9.693739 TTAGTATGTTTGGATCACCACATTAAT 57.306 29.630 7.86 0.00 46.80 1.40
468 558 8.225603 AGTATGTTTGGATCACCACATTAATC 57.774 34.615 7.86 0.00 46.80 1.75
469 559 7.833682 AGTATGTTTGGATCACCACATTAATCA 59.166 33.333 7.86 0.00 46.80 2.57
470 560 6.513806 TGTTTGGATCACCACATTAATCAG 57.486 37.500 0.00 0.00 46.80 2.90
471 561 5.105797 TGTTTGGATCACCACATTAATCAGC 60.106 40.000 0.00 0.00 46.80 4.26
472 562 4.233632 TGGATCACCACATTAATCAGCA 57.766 40.909 0.00 0.00 41.77 4.41
473 563 3.947196 TGGATCACCACATTAATCAGCAC 59.053 43.478 0.00 0.00 41.77 4.40
474 564 3.316308 GGATCACCACATTAATCAGCACC 59.684 47.826 0.00 0.00 35.97 5.01
475 565 3.431673 TCACCACATTAATCAGCACCA 57.568 42.857 0.00 0.00 0.00 4.17
476 566 3.966979 TCACCACATTAATCAGCACCAT 58.033 40.909 0.00 0.00 0.00 3.55
477 567 5.109500 TCACCACATTAATCAGCACCATA 57.891 39.130 0.00 0.00 0.00 2.74
478 568 5.504853 TCACCACATTAATCAGCACCATAA 58.495 37.500 0.00 0.00 0.00 1.90
479 569 5.356751 TCACCACATTAATCAGCACCATAAC 59.643 40.000 0.00 0.00 0.00 1.89
480 570 4.644685 ACCACATTAATCAGCACCATAACC 59.355 41.667 0.00 0.00 0.00 2.85
481 571 4.644234 CCACATTAATCAGCACCATAACCA 59.356 41.667 0.00 0.00 0.00 3.67
482 572 5.221106 CCACATTAATCAGCACCATAACCAG 60.221 44.000 0.00 0.00 0.00 4.00
483 573 5.589855 CACATTAATCAGCACCATAACCAGA 59.410 40.000 0.00 0.00 0.00 3.86
484 574 6.263842 CACATTAATCAGCACCATAACCAGAT 59.736 38.462 0.00 0.00 0.00 2.90
485 575 6.835488 ACATTAATCAGCACCATAACCAGATT 59.165 34.615 0.00 0.00 0.00 2.40
486 576 6.942532 TTAATCAGCACCATAACCAGATTC 57.057 37.500 0.00 0.00 0.00 2.52
487 577 4.785346 ATCAGCACCATAACCAGATTCT 57.215 40.909 0.00 0.00 0.00 2.40
488 578 4.142609 TCAGCACCATAACCAGATTCTC 57.857 45.455 0.00 0.00 0.00 2.87
489 579 3.776969 TCAGCACCATAACCAGATTCTCT 59.223 43.478 0.00 0.00 0.00 3.10
490 580 4.125703 CAGCACCATAACCAGATTCTCTC 58.874 47.826 0.00 0.00 0.00 3.20
491 581 3.135530 AGCACCATAACCAGATTCTCTCC 59.864 47.826 0.00 0.00 0.00 3.71
492 582 3.118261 GCACCATAACCAGATTCTCTCCA 60.118 47.826 0.00 0.00 0.00 3.86
493 583 4.626287 GCACCATAACCAGATTCTCTCCAA 60.626 45.833 0.00 0.00 0.00 3.53
494 584 5.121811 CACCATAACCAGATTCTCTCCAAG 58.878 45.833 0.00 0.00 0.00 3.61
495 585 4.164988 ACCATAACCAGATTCTCTCCAAGG 59.835 45.833 0.00 0.00 0.00 3.61
496 586 2.797177 AACCAGATTCTCTCCAAGGC 57.203 50.000 0.00 0.00 0.00 4.35
497 587 1.661463 ACCAGATTCTCTCCAAGGCA 58.339 50.000 0.00 0.00 0.00 4.75
498 588 1.988107 ACCAGATTCTCTCCAAGGCAA 59.012 47.619 0.00 0.00 0.00 4.52
546 704 1.753073 GACCTGCCTTCAATCAATGGG 59.247 52.381 0.00 0.00 0.00 4.00
553 711 2.167075 CCTTCAATCAATGGGGAAGTGC 59.833 50.000 0.00 0.00 36.00 4.40
694 855 1.808799 CATCTGCACGCGCTTCTCT 60.809 57.895 5.73 0.00 39.64 3.10
700 861 1.014564 GCACGCGCTTCTCTACCTTT 61.015 55.000 5.73 0.00 34.30 3.11
764 926 4.408821 CCCAGCTTGCCGCCTACA 62.409 66.667 0.00 0.00 40.39 2.74
895 1326 9.608617 CTGCTTGATTGTATATCTATGCAAAAG 57.391 33.333 5.08 6.50 40.67 2.27
945 7187 4.790962 CAGCTGGGCATGGCGAGT 62.791 66.667 27.74 14.71 0.00 4.18
1044 7286 1.406065 CCTGGATCATCCTGAGCGGT 61.406 60.000 12.14 0.00 37.65 5.68
1101 7343 0.032615 AGCCTCTCCTCGTCTCCATT 60.033 55.000 0.00 0.00 0.00 3.16
1182 7424 0.179094 TGTTCGCCAACGTCTTCAGT 60.179 50.000 0.00 0.00 41.18 3.41
1531 7787 1.334869 GCAGTTTCAGTTGTGGACCAG 59.665 52.381 0.00 0.00 0.00 4.00
1556 7812 3.966218 GCGCGCCTACATTTTATACTTTG 59.034 43.478 23.24 0.00 0.00 2.77
1662 7919 0.937304 CCGGGTACATGAAGAATGCG 59.063 55.000 0.00 0.00 40.22 4.73
1772 8050 1.412343 GGTTTTTCCATGCACACTGGT 59.588 47.619 4.77 0.00 35.19 4.00
1788 8066 6.093495 GCACACTGGTTATTGCTATTAGTTCA 59.907 38.462 0.00 0.00 32.00 3.18
1789 8067 7.201732 GCACACTGGTTATTGCTATTAGTTCAT 60.202 37.037 0.00 0.00 32.00 2.57
1790 8068 9.325198 CACACTGGTTATTGCTATTAGTTCATA 57.675 33.333 0.00 0.00 0.00 2.15
1866 8144 0.529773 TCCTTGTCGCCGCATATGAC 60.530 55.000 6.97 0.00 0.00 3.06
1957 8240 5.726980 TTCTATTGGCTTTTTGTCTGCAT 57.273 34.783 0.00 0.00 0.00 3.96
2005 8294 5.006153 TCCCTATTAATCGTATCATGCGG 57.994 43.478 0.00 0.00 0.00 5.69
2022 8311 4.497473 TGCGGTTGAATAAGTTTTCAGG 57.503 40.909 0.00 0.00 36.97 3.86
2107 8397 0.890996 CAAGAAGGGCCAAGTTCGCT 60.891 55.000 6.18 0.00 0.00 4.93
2128 8418 4.808895 GCTATCATAAATGTCGTCACCACA 59.191 41.667 0.00 0.00 0.00 4.17
2168 8458 4.477780 TGTGTTGTTCGTGTTTTTCCTTC 58.522 39.130 0.00 0.00 0.00 3.46
2222 8512 2.116983 GAGTGAAGAGGTGGCTGCCA 62.117 60.000 19.30 19.30 0.00 4.92
2520 8816 8.614469 TGTCAACATCACAACATATTACTTCA 57.386 30.769 0.00 0.00 0.00 3.02
2521 8817 8.720562 TGTCAACATCACAACATATTACTTCAG 58.279 33.333 0.00 0.00 0.00 3.02
2522 8818 8.721478 GTCAACATCACAACATATTACTTCAGT 58.279 33.333 0.00 0.00 0.00 3.41
2523 8819 9.283768 TCAACATCACAACATATTACTTCAGTT 57.716 29.630 0.00 0.00 0.00 3.16
2524 8820 9.333497 CAACATCACAACATATTACTTCAGTTG 57.667 33.333 0.00 0.00 43.71 3.16
2525 8821 7.530010 ACATCACAACATATTACTTCAGTTGC 58.470 34.615 0.00 0.00 42.32 4.17
2526 8822 6.494893 TCACAACATATTACTTCAGTTGCC 57.505 37.500 0.00 0.00 42.32 4.52
2527 8823 6.000840 TCACAACATATTACTTCAGTTGCCA 58.999 36.000 0.00 0.00 42.32 4.92
2528 8824 6.072728 TCACAACATATTACTTCAGTTGCCAC 60.073 38.462 0.00 0.00 42.32 5.01
2529 8825 5.767665 ACAACATATTACTTCAGTTGCCACA 59.232 36.000 0.00 0.00 42.32 4.17
2530 8826 5.880054 ACATATTACTTCAGTTGCCACAC 57.120 39.130 0.00 0.00 0.00 3.82
2531 8827 4.391830 ACATATTACTTCAGTTGCCACACG 59.608 41.667 0.00 0.00 0.00 4.49
2532 8828 0.941542 TTACTTCAGTTGCCACACGC 59.058 50.000 0.00 0.00 38.31 5.34
2540 8836 4.168291 TGCCACACGCACCTGACA 62.168 61.111 0.00 0.00 44.64 3.58
2541 8837 2.899838 GCCACACGCACCTGACAA 60.900 61.111 0.00 0.00 37.47 3.18
2542 8838 2.260869 GCCACACGCACCTGACAAT 61.261 57.895 0.00 0.00 37.47 2.71
2543 8839 0.953471 GCCACACGCACCTGACAATA 60.953 55.000 0.00 0.00 37.47 1.90
2544 8840 1.518325 CCACACGCACCTGACAATAA 58.482 50.000 0.00 0.00 0.00 1.40
2545 8841 2.083774 CCACACGCACCTGACAATAAT 58.916 47.619 0.00 0.00 0.00 1.28
2546 8842 2.487762 CCACACGCACCTGACAATAATT 59.512 45.455 0.00 0.00 0.00 1.40
2547 8843 3.687212 CCACACGCACCTGACAATAATTA 59.313 43.478 0.00 0.00 0.00 1.40
2548 8844 4.335315 CCACACGCACCTGACAATAATTAT 59.665 41.667 0.00 0.00 0.00 1.28
2549 8845 5.501715 CACACGCACCTGACAATAATTATC 58.498 41.667 0.00 0.00 0.00 1.75
2550 8846 5.294306 CACACGCACCTGACAATAATTATCT 59.706 40.000 0.00 0.00 0.00 1.98
2551 8847 5.880332 ACACGCACCTGACAATAATTATCTT 59.120 36.000 0.00 0.00 0.00 2.40
2552 8848 7.011016 CACACGCACCTGACAATAATTATCTTA 59.989 37.037 0.00 0.00 0.00 2.10
2553 8849 7.011109 ACACGCACCTGACAATAATTATCTTAC 59.989 37.037 0.00 0.00 0.00 2.34
2554 8850 6.482308 ACGCACCTGACAATAATTATCTTACC 59.518 38.462 0.00 0.00 0.00 2.85
2555 8851 6.481976 CGCACCTGACAATAATTATCTTACCA 59.518 38.462 0.00 0.00 0.00 3.25
2556 8852 7.173218 CGCACCTGACAATAATTATCTTACCAT 59.827 37.037 0.00 0.00 0.00 3.55
2557 8853 8.507249 GCACCTGACAATAATTATCTTACCATC 58.493 37.037 0.00 0.00 0.00 3.51
2558 8854 9.559732 CACCTGACAATAATTATCTTACCATCA 57.440 33.333 0.00 0.00 0.00 3.07
2559 8855 9.561069 ACCTGACAATAATTATCTTACCATCAC 57.439 33.333 0.00 0.00 0.00 3.06
2560 8856 9.559732 CCTGACAATAATTATCTTACCATCACA 57.440 33.333 0.00 0.00 0.00 3.58
2574 8870 9.330063 TCTTACCATCACATGATATCAAAGAAC 57.670 33.333 9.99 0.00 32.63 3.01
2575 8871 9.112725 CTTACCATCACATGATATCAAAGAACA 57.887 33.333 9.99 0.00 32.63 3.18
2576 8872 9.631257 TTACCATCACATGATATCAAAGAACAT 57.369 29.630 9.99 0.00 32.63 2.71
2578 8874 9.631257 ACCATCACATGATATCAAAGAACATAA 57.369 29.630 9.99 0.00 32.63 1.90
2579 8875 9.888878 CCATCACATGATATCAAAGAACATAAC 57.111 33.333 9.99 0.00 32.63 1.89
2580 8876 9.888878 CATCACATGATATCAAAGAACATAACC 57.111 33.333 9.99 0.00 32.63 2.85
2581 8877 9.857656 ATCACATGATATCAAAGAACATAACCT 57.142 29.630 9.99 0.00 32.01 3.50
2584 8880 9.784531 ACATGATATCAAAGAACATAACCTAGG 57.215 33.333 9.99 7.41 0.00 3.02
2589 8885 7.573968 ATCAAAGAACATAACCTAGGATTGC 57.426 36.000 17.98 0.00 0.00 3.56
2590 8886 6.721318 TCAAAGAACATAACCTAGGATTGCT 58.279 36.000 17.98 0.75 0.00 3.91
2591 8887 6.823689 TCAAAGAACATAACCTAGGATTGCTC 59.176 38.462 17.98 10.22 0.00 4.26
2592 8888 5.297569 AGAACATAACCTAGGATTGCTCC 57.702 43.478 17.98 0.00 42.43 4.70
2593 8889 4.721776 AGAACATAACCTAGGATTGCTCCA 59.278 41.667 17.98 0.00 44.79 3.86
2594 8890 5.191722 AGAACATAACCTAGGATTGCTCCAA 59.808 40.000 17.98 0.00 44.79 3.53
2595 8891 5.041191 ACATAACCTAGGATTGCTCCAAG 57.959 43.478 17.98 0.00 44.79 3.61
2596 8892 4.721776 ACATAACCTAGGATTGCTCCAAGA 59.278 41.667 17.98 0.00 44.79 3.02
2597 8893 5.370880 ACATAACCTAGGATTGCTCCAAGAT 59.629 40.000 17.98 0.00 44.79 2.40
2598 8894 3.853355 ACCTAGGATTGCTCCAAGATG 57.147 47.619 17.98 0.00 44.79 2.90
2599 8895 3.118531 ACCTAGGATTGCTCCAAGATGT 58.881 45.455 17.98 0.00 44.79 3.06
2600 8896 4.298626 ACCTAGGATTGCTCCAAGATGTA 58.701 43.478 17.98 0.00 44.79 2.29
2601 8897 4.346418 ACCTAGGATTGCTCCAAGATGTAG 59.654 45.833 17.98 0.00 44.79 2.74
2602 8898 4.346418 CCTAGGATTGCTCCAAGATGTAGT 59.654 45.833 1.05 0.00 44.79 2.73
2603 8899 4.851639 AGGATTGCTCCAAGATGTAGTT 57.148 40.909 0.00 0.00 44.79 2.24
2604 8900 5.957771 AGGATTGCTCCAAGATGTAGTTA 57.042 39.130 0.00 0.00 44.79 2.24
2605 8901 6.506538 AGGATTGCTCCAAGATGTAGTTAT 57.493 37.500 0.00 0.00 44.79 1.89
2606 8902 6.294473 AGGATTGCTCCAAGATGTAGTTATG 58.706 40.000 0.00 0.00 44.79 1.90
2607 8903 6.058183 GGATTGCTCCAAGATGTAGTTATGT 58.942 40.000 0.00 0.00 41.64 2.29
2608 8904 6.543831 GGATTGCTCCAAGATGTAGTTATGTT 59.456 38.462 0.00 0.00 41.64 2.71
2609 8905 7.715249 GGATTGCTCCAAGATGTAGTTATGTTA 59.285 37.037 0.00 0.00 41.64 2.41
2610 8906 7.843490 TTGCTCCAAGATGTAGTTATGTTAC 57.157 36.000 0.00 0.00 0.00 2.50
2611 8907 7.182817 TGCTCCAAGATGTAGTTATGTTACT 57.817 36.000 0.00 0.00 0.00 2.24
2612 8908 8.301252 TGCTCCAAGATGTAGTTATGTTACTA 57.699 34.615 0.00 0.00 0.00 1.82
2613 8909 8.195436 TGCTCCAAGATGTAGTTATGTTACTAC 58.805 37.037 6.92 6.92 46.85 2.73
2661 8957 9.566530 AAAAACTTAAATTTGGACATGTTTTGC 57.433 25.926 0.00 0.00 36.77 3.68
2662 8958 7.856145 AACTTAAATTTGGACATGTTTTGCA 57.144 28.000 0.00 0.00 0.00 4.08
2663 8959 7.856145 ACTTAAATTTGGACATGTTTTGCAA 57.144 28.000 0.00 0.00 0.00 4.08
2664 8960 8.273780 ACTTAAATTTGGACATGTTTTGCAAA 57.726 26.923 8.05 8.05 0.00 3.68
2665 8961 8.734386 ACTTAAATTTGGACATGTTTTGCAAAA 58.266 25.926 20.46 20.46 0.00 2.44
2666 8962 9.565213 CTTAAATTTGGACATGTTTTGCAAAAA 57.435 25.926 25.40 15.82 0.00 1.94
2667 8963 9.565213 TTAAATTTGGACATGTTTTGCAAAAAG 57.435 25.926 25.40 19.30 0.00 2.27
2668 8964 6.756299 ATTTGGACATGTTTTGCAAAAAGT 57.244 29.167 25.40 22.02 0.00 2.66
2669 8965 5.542616 TTGGACATGTTTTGCAAAAAGTG 57.457 34.783 25.40 25.05 0.00 3.16
2670 8966 4.573900 TGGACATGTTTTGCAAAAAGTGT 58.426 34.783 28.99 28.99 33.32 3.55
2671 8967 5.724328 TGGACATGTTTTGCAAAAAGTGTA 58.276 33.333 28.81 18.78 31.84 2.90
2672 8968 5.809562 TGGACATGTTTTGCAAAAAGTGTAG 59.190 36.000 28.81 18.23 31.84 2.74
2673 8969 5.234116 GGACATGTTTTGCAAAAAGTGTAGG 59.766 40.000 28.81 17.47 31.84 3.18
2674 8970 5.115480 ACATGTTTTGCAAAAAGTGTAGGG 58.885 37.500 28.17 15.68 30.70 3.53
2675 8971 5.105146 ACATGTTTTGCAAAAAGTGTAGGGA 60.105 36.000 28.17 5.47 30.70 4.20
2676 8972 5.407407 TGTTTTGCAAAAAGTGTAGGGAA 57.593 34.783 25.40 0.00 0.00 3.97
2677 8973 5.794894 TGTTTTGCAAAAAGTGTAGGGAAA 58.205 33.333 25.40 0.00 0.00 3.13
2678 8974 6.231211 TGTTTTGCAAAAAGTGTAGGGAAAA 58.769 32.000 25.40 0.00 0.00 2.29
2679 8975 6.710744 TGTTTTGCAAAAAGTGTAGGGAAAAA 59.289 30.769 25.40 0.00 0.00 1.94
2680 8976 7.391833 TGTTTTGCAAAAAGTGTAGGGAAAAAT 59.608 29.630 25.40 0.00 0.00 1.82
2681 8977 6.917217 TTGCAAAAAGTGTAGGGAAAAATG 57.083 33.333 0.00 0.00 0.00 2.32
2682 8978 5.983540 TGCAAAAAGTGTAGGGAAAAATGT 58.016 33.333 0.00 0.00 0.00 2.71
2683 8979 7.113658 TGCAAAAAGTGTAGGGAAAAATGTA 57.886 32.000 0.00 0.00 0.00 2.29
2684 8980 7.556844 TGCAAAAAGTGTAGGGAAAAATGTAA 58.443 30.769 0.00 0.00 0.00 2.41
2685 8981 8.041323 TGCAAAAAGTGTAGGGAAAAATGTAAA 58.959 29.630 0.00 0.00 0.00 2.01
2686 8982 8.884726 GCAAAAAGTGTAGGGAAAAATGTAAAA 58.115 29.630 0.00 0.00 0.00 1.52
2688 8984 8.637281 AAAAGTGTAGGGAAAAATGTAAAACG 57.363 30.769 0.00 0.00 0.00 3.60
2689 8985 6.321848 AGTGTAGGGAAAAATGTAAAACGG 57.678 37.500 0.00 0.00 0.00 4.44
2690 8986 4.919168 GTGTAGGGAAAAATGTAAAACGGC 59.081 41.667 0.00 0.00 0.00 5.68
2691 8987 4.828387 TGTAGGGAAAAATGTAAAACGGCT 59.172 37.500 0.00 0.00 0.00 5.52
2692 8988 6.002704 TGTAGGGAAAAATGTAAAACGGCTA 58.997 36.000 0.00 0.00 0.00 3.93
2693 8989 6.660094 TGTAGGGAAAAATGTAAAACGGCTAT 59.340 34.615 0.00 0.00 0.00 2.97
2694 8990 7.828223 TGTAGGGAAAAATGTAAAACGGCTATA 59.172 33.333 0.00 0.00 0.00 1.31
2695 8991 7.706100 AGGGAAAAATGTAAAACGGCTATAA 57.294 32.000 0.00 0.00 0.00 0.98
2696 8992 7.541162 AGGGAAAAATGTAAAACGGCTATAAC 58.459 34.615 0.00 0.00 0.00 1.89
2697 8993 7.395206 AGGGAAAAATGTAAAACGGCTATAACT 59.605 33.333 0.00 0.00 0.00 2.24
2698 8994 8.030692 GGGAAAAATGTAAAACGGCTATAACTT 58.969 33.333 0.00 0.00 0.00 2.66
2699 8995 9.414295 GGAAAAATGTAAAACGGCTATAACTTT 57.586 29.630 0.00 0.00 0.00 2.66
2702 8998 7.806149 AATGTAAAACGGCTATAACTTTTGC 57.194 32.000 0.00 0.00 0.00 3.68
2703 8999 6.315091 TGTAAAACGGCTATAACTTTTGCA 57.685 33.333 0.00 0.00 0.00 4.08
2704 9000 6.915349 TGTAAAACGGCTATAACTTTTGCAT 58.085 32.000 0.00 0.00 0.00 3.96
2705 9001 8.041829 TGTAAAACGGCTATAACTTTTGCATA 57.958 30.769 0.00 0.00 0.00 3.14
2706 9002 7.964011 TGTAAAACGGCTATAACTTTTGCATAC 59.036 33.333 0.00 0.00 0.00 2.39
2707 9003 4.789095 ACGGCTATAACTTTTGCATACG 57.211 40.909 0.00 0.00 0.00 3.06
2708 9004 4.435425 ACGGCTATAACTTTTGCATACGA 58.565 39.130 0.00 0.00 0.00 3.43
2709 9005 5.054477 ACGGCTATAACTTTTGCATACGAT 58.946 37.500 0.00 0.00 0.00 3.73
2710 9006 5.050363 ACGGCTATAACTTTTGCATACGATG 60.050 40.000 0.00 0.00 0.00 3.84
2711 9007 5.050363 CGGCTATAACTTTTGCATACGATGT 60.050 40.000 0.00 0.00 0.00 3.06
2712 9008 6.363473 GGCTATAACTTTTGCATACGATGTC 58.637 40.000 0.00 0.00 0.00 3.06
2713 9009 6.018262 GGCTATAACTTTTGCATACGATGTCA 60.018 38.462 0.00 0.00 0.00 3.58
2714 9010 7.065894 GCTATAACTTTTGCATACGATGTCAG 58.934 38.462 0.00 0.00 0.00 3.51
2715 9011 7.042725 GCTATAACTTTTGCATACGATGTCAGA 60.043 37.037 0.00 0.00 0.00 3.27
2716 9012 5.940192 AACTTTTGCATACGATGTCAGAA 57.060 34.783 0.00 0.00 0.00 3.02
2717 9013 5.940192 ACTTTTGCATACGATGTCAGAAA 57.060 34.783 0.00 0.00 0.00 2.52
2718 9014 6.312399 ACTTTTGCATACGATGTCAGAAAA 57.688 33.333 0.00 0.00 0.00 2.29
2719 9015 6.734137 ACTTTTGCATACGATGTCAGAAAAA 58.266 32.000 0.00 0.00 0.00 1.94
2752 9048 9.853555 AATATATCAAAATGTTCAGCACGAAAA 57.146 25.926 0.00 0.00 34.69 2.29
2754 9050 6.695292 ATCAAAATGTTCAGCACGAAAATC 57.305 33.333 0.00 0.00 34.69 2.17
2755 9051 4.981674 TCAAAATGTTCAGCACGAAAATCC 59.018 37.500 0.00 0.00 34.69 3.01
2756 9052 2.900122 ATGTTCAGCACGAAAATCCG 57.100 45.000 0.00 0.00 34.69 4.18
2757 9053 0.237235 TGTTCAGCACGAAAATCCGC 59.763 50.000 0.00 0.00 34.69 5.54
2758 9054 0.237235 GTTCAGCACGAAAATCCGCA 59.763 50.000 0.00 0.00 34.69 5.69
2759 9055 1.135689 GTTCAGCACGAAAATCCGCAT 60.136 47.619 0.00 0.00 34.69 4.73
2760 9056 0.726827 TCAGCACGAAAATCCGCATC 59.273 50.000 0.00 0.00 0.00 3.91
2761 9057 0.248215 CAGCACGAAAATCCGCATCC 60.248 55.000 0.00 0.00 0.00 3.51
2762 9058 1.297598 GCACGAAAATCCGCATCCG 60.298 57.895 0.00 0.00 0.00 4.18
2763 9059 1.701545 GCACGAAAATCCGCATCCGA 61.702 55.000 0.00 0.00 36.29 4.55
2764 9060 0.301687 CACGAAAATCCGCATCCGAG 59.698 55.000 0.00 0.00 36.29 4.63
2765 9061 0.108329 ACGAAAATCCGCATCCGAGT 60.108 50.000 0.00 0.00 36.29 4.18
2766 9062 1.006832 CGAAAATCCGCATCCGAGTT 58.993 50.000 0.00 0.00 36.29 3.01
2767 9063 1.396996 CGAAAATCCGCATCCGAGTTT 59.603 47.619 0.00 0.00 36.29 2.66
2768 9064 2.785679 GAAAATCCGCATCCGAGTTTG 58.214 47.619 0.00 0.00 36.29 2.93
2769 9065 2.107950 AAATCCGCATCCGAGTTTGA 57.892 45.000 0.00 0.00 36.29 2.69
2770 9066 1.369625 AATCCGCATCCGAGTTTGAC 58.630 50.000 0.00 0.00 36.29 3.18
2771 9067 0.806102 ATCCGCATCCGAGTTTGACG 60.806 55.000 0.00 0.00 36.29 4.35
2777 9073 4.180496 CCGAGTTTGACGGCCTAC 57.820 61.111 0.00 0.00 43.74 3.18
2789 9085 2.671619 GCCTACGGCCTGTTTGCA 60.672 61.111 0.00 0.00 44.06 4.08
2790 9086 2.265182 GCCTACGGCCTGTTTGCAA 61.265 57.895 0.00 0.00 44.06 4.08
2791 9087 1.595093 GCCTACGGCCTGTTTGCAAT 61.595 55.000 0.00 0.00 44.06 3.56
2792 9088 0.887933 CCTACGGCCTGTTTGCAATT 59.112 50.000 0.00 0.00 0.00 2.32
2793 9089 1.272212 CCTACGGCCTGTTTGCAATTT 59.728 47.619 0.00 0.00 0.00 1.82
2794 9090 2.288763 CCTACGGCCTGTTTGCAATTTT 60.289 45.455 0.00 0.00 0.00 1.82
2795 9091 2.323968 ACGGCCTGTTTGCAATTTTT 57.676 40.000 0.00 0.00 0.00 1.94
2878 9174 9.883142 TGAATTTTTGTTAAATCTGGTCAAACT 57.117 25.926 0.00 0.00 0.00 2.66
2882 9178 9.757227 TTTTTGTTAAATCTGGTCAAACTATGG 57.243 29.630 0.00 0.00 0.00 2.74
2883 9179 8.472007 TTTGTTAAATCTGGTCAAACTATGGT 57.528 30.769 0.00 0.00 0.00 3.55
2884 9180 7.681939 TGTTAAATCTGGTCAAACTATGGTC 57.318 36.000 0.00 0.00 0.00 4.02
2885 9181 7.227873 TGTTAAATCTGGTCAAACTATGGTCA 58.772 34.615 0.00 0.00 0.00 4.02
2886 9182 7.721842 TGTTAAATCTGGTCAAACTATGGTCAA 59.278 33.333 0.00 0.00 0.00 3.18
2887 9183 8.573035 GTTAAATCTGGTCAAACTATGGTCAAA 58.427 33.333 0.00 0.00 0.00 2.69
2888 9184 6.575162 AATCTGGTCAAACTATGGTCAAAC 57.425 37.500 0.00 0.00 0.00 2.93
2889 9185 5.304686 TCTGGTCAAACTATGGTCAAACT 57.695 39.130 0.00 0.00 0.00 2.66
2890 9186 6.428083 TCTGGTCAAACTATGGTCAAACTA 57.572 37.500 0.00 0.00 0.00 2.24
2891 9187 6.228258 TCTGGTCAAACTATGGTCAAACTAC 58.772 40.000 0.00 0.00 0.00 2.73
2892 9188 6.042781 TCTGGTCAAACTATGGTCAAACTACT 59.957 38.462 0.00 0.00 0.00 2.57
2893 9189 6.597562 TGGTCAAACTATGGTCAAACTACTT 58.402 36.000 0.00 0.00 0.00 2.24
2894 9190 7.737869 TGGTCAAACTATGGTCAAACTACTTA 58.262 34.615 0.00 0.00 0.00 2.24
2895 9191 8.380099 TGGTCAAACTATGGTCAAACTACTTAT 58.620 33.333 0.00 0.00 0.00 1.73
2896 9192 9.227777 GGTCAAACTATGGTCAAACTACTTATT 57.772 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.517210 GAACCAAAAACCGCCCGCTA 61.517 55.000 0.00 0.00 0.00 4.26
1 2 2.835895 AACCAAAAACCGCCCGCT 60.836 55.556 0.00 0.00 0.00 5.52
2 3 2.355363 GAACCAAAAACCGCCCGC 60.355 61.111 0.00 0.00 0.00 6.13
3 4 0.596341 CAAGAACCAAAAACCGCCCG 60.596 55.000 0.00 0.00 0.00 6.13
4 5 0.878523 GCAAGAACCAAAAACCGCCC 60.879 55.000 0.00 0.00 0.00 6.13
5 6 0.104120 AGCAAGAACCAAAAACCGCC 59.896 50.000 0.00 0.00 0.00 6.13
6 7 2.785713 TAGCAAGAACCAAAAACCGC 57.214 45.000 0.00 0.00 0.00 5.68
7 8 4.616953 ACAATAGCAAGAACCAAAAACCG 58.383 39.130 0.00 0.00 0.00 4.44
8 9 5.465390 GGAACAATAGCAAGAACCAAAAACC 59.535 40.000 0.00 0.00 0.00 3.27
9 10 6.280643 AGGAACAATAGCAAGAACCAAAAAC 58.719 36.000 0.00 0.00 0.00 2.43
10 11 6.478512 AGGAACAATAGCAAGAACCAAAAA 57.521 33.333 0.00 0.00 0.00 1.94
11 12 6.775629 AGTAGGAACAATAGCAAGAACCAAAA 59.224 34.615 0.00 0.00 0.00 2.44
12 13 6.206634 CAGTAGGAACAATAGCAAGAACCAAA 59.793 38.462 0.00 0.00 0.00 3.28
13 14 5.705441 CAGTAGGAACAATAGCAAGAACCAA 59.295 40.000 0.00 0.00 0.00 3.67
14 15 5.221843 ACAGTAGGAACAATAGCAAGAACCA 60.222 40.000 0.00 0.00 0.00 3.67
15 16 5.246307 ACAGTAGGAACAATAGCAAGAACC 58.754 41.667 0.00 0.00 0.00 3.62
16 17 5.351740 GGACAGTAGGAACAATAGCAAGAAC 59.648 44.000 0.00 0.00 0.00 3.01
17 18 5.488341 GGACAGTAGGAACAATAGCAAGAA 58.512 41.667 0.00 0.00 0.00 2.52
18 19 4.081087 GGGACAGTAGGAACAATAGCAAGA 60.081 45.833 0.00 0.00 0.00 3.02
19 20 4.192317 GGGACAGTAGGAACAATAGCAAG 58.808 47.826 0.00 0.00 0.00 4.01
20 21 3.054655 GGGGACAGTAGGAACAATAGCAA 60.055 47.826 0.00 0.00 0.00 3.91
21 22 2.504175 GGGGACAGTAGGAACAATAGCA 59.496 50.000 0.00 0.00 0.00 3.49
22 23 2.504175 TGGGGACAGTAGGAACAATAGC 59.496 50.000 0.00 0.00 35.01 2.97
38 39 2.764572 GCTAACAGCTAACTACTGGGGA 59.235 50.000 0.00 0.00 39.55 4.81
57 58 2.162408 GCCGTGCTTCATAAAGAAAGCT 59.838 45.455 8.38 0.00 35.40 3.74
107 109 3.067461 GGGCTCTATCCTCTATGTATGCG 59.933 52.174 0.00 0.00 0.00 4.73
108 110 3.067461 CGGGCTCTATCCTCTATGTATGC 59.933 52.174 0.00 0.00 0.00 3.14
137 139 7.276658 TCCCATACGCATCTATGTTTCTTTAA 58.723 34.615 0.00 0.00 0.00 1.52
194 205 4.081752 AGCTTCAGATCACAAGTAGGACTG 60.082 45.833 0.00 0.00 0.00 3.51
283 352 8.076178 CCGATCAATCCCAACAGTTATTAATTC 58.924 37.037 0.00 0.00 0.00 2.17
361 433 3.736252 GTCACTGTCAGTGTGTGTCATAC 59.264 47.826 27.97 15.02 46.03 2.39
430 520 1.517694 CATACTAACCCGCACGCGT 60.518 57.895 5.58 5.58 37.81 6.01
431 521 1.079875 AACATACTAACCCGCACGCG 61.080 55.000 3.53 3.53 39.44 6.01
432 522 1.081094 AAACATACTAACCCGCACGC 58.919 50.000 0.00 0.00 0.00 5.34
433 523 1.395608 CCAAACATACTAACCCGCACG 59.604 52.381 0.00 0.00 0.00 5.34
434 524 2.702261 TCCAAACATACTAACCCGCAC 58.298 47.619 0.00 0.00 0.00 5.34
435 525 3.055021 TGATCCAAACATACTAACCCGCA 60.055 43.478 0.00 0.00 0.00 5.69
436 526 3.311596 GTGATCCAAACATACTAACCCGC 59.688 47.826 0.00 0.00 0.00 6.13
437 527 3.875134 GGTGATCCAAACATACTAACCCG 59.125 47.826 0.00 0.00 0.00 5.28
438 528 4.638865 GTGGTGATCCAAACATACTAACCC 59.361 45.833 0.00 0.00 46.15 4.11
439 529 5.250200 TGTGGTGATCCAAACATACTAACC 58.750 41.667 0.00 0.00 46.15 2.85
440 530 7.391148 AATGTGGTGATCCAAACATACTAAC 57.609 36.000 5.09 0.00 46.15 2.34
441 531 9.693739 ATTAATGTGGTGATCCAAACATACTAA 57.306 29.630 5.09 3.09 46.15 2.24
442 532 9.337396 GATTAATGTGGTGATCCAAACATACTA 57.663 33.333 0.00 0.00 46.15 1.82
443 533 7.833682 TGATTAATGTGGTGATCCAAACATACT 59.166 33.333 0.00 0.00 46.15 2.12
444 534 7.995289 TGATTAATGTGGTGATCCAAACATAC 58.005 34.615 0.00 0.00 46.15 2.39
445 535 7.201812 GCTGATTAATGTGGTGATCCAAACATA 60.202 37.037 0.00 0.00 46.15 2.29
446 536 6.406177 GCTGATTAATGTGGTGATCCAAACAT 60.406 38.462 0.00 0.00 46.15 2.71
447 537 5.105797 GCTGATTAATGTGGTGATCCAAACA 60.106 40.000 0.00 0.00 46.15 2.83
448 538 5.105797 TGCTGATTAATGTGGTGATCCAAAC 60.106 40.000 0.00 0.00 46.15 2.93
449 539 5.015515 TGCTGATTAATGTGGTGATCCAAA 58.984 37.500 0.00 0.00 46.15 3.28
450 540 4.398988 GTGCTGATTAATGTGGTGATCCAA 59.601 41.667 0.00 0.00 46.15 3.53
451 541 3.947196 GTGCTGATTAATGTGGTGATCCA 59.053 43.478 0.00 0.00 42.05 3.41
452 542 3.316308 GGTGCTGATTAATGTGGTGATCC 59.684 47.826 0.00 0.00 0.00 3.36
453 543 3.947196 TGGTGCTGATTAATGTGGTGATC 59.053 43.478 0.00 0.00 0.00 2.92
454 544 3.966979 TGGTGCTGATTAATGTGGTGAT 58.033 40.909 0.00 0.00 0.00 3.06
455 545 3.431673 TGGTGCTGATTAATGTGGTGA 57.568 42.857 0.00 0.00 0.00 4.02
456 546 5.450412 GGTTATGGTGCTGATTAATGTGGTG 60.450 44.000 0.00 0.00 0.00 4.17
457 547 4.644685 GGTTATGGTGCTGATTAATGTGGT 59.355 41.667 0.00 0.00 0.00 4.16
458 548 4.644234 TGGTTATGGTGCTGATTAATGTGG 59.356 41.667 0.00 0.00 0.00 4.17
459 549 5.589855 TCTGGTTATGGTGCTGATTAATGTG 59.410 40.000 0.00 0.00 0.00 3.21
460 550 5.754782 TCTGGTTATGGTGCTGATTAATGT 58.245 37.500 0.00 0.00 0.00 2.71
461 551 6.889301 ATCTGGTTATGGTGCTGATTAATG 57.111 37.500 0.00 0.00 0.00 1.90
462 552 7.293073 AGAATCTGGTTATGGTGCTGATTAAT 58.707 34.615 0.00 0.00 0.00 1.40
463 553 6.662755 AGAATCTGGTTATGGTGCTGATTAA 58.337 36.000 0.00 0.00 0.00 1.40
464 554 6.252599 AGAATCTGGTTATGGTGCTGATTA 57.747 37.500 0.00 0.00 0.00 1.75
465 555 5.121380 AGAATCTGGTTATGGTGCTGATT 57.879 39.130 0.00 0.00 0.00 2.57
466 556 4.712476 GAGAATCTGGTTATGGTGCTGAT 58.288 43.478 0.00 0.00 0.00 2.90
467 557 4.142609 GAGAATCTGGTTATGGTGCTGA 57.857 45.455 0.00 0.00 0.00 4.26
482 572 3.679389 TCTTGTTGCCTTGGAGAGAATC 58.321 45.455 0.00 0.00 0.00 2.52
483 573 3.795688 TCTTGTTGCCTTGGAGAGAAT 57.204 42.857 0.00 0.00 0.00 2.40
484 574 3.795688 ATCTTGTTGCCTTGGAGAGAA 57.204 42.857 0.00 0.00 0.00 2.87
485 575 3.328931 AGAATCTTGTTGCCTTGGAGAGA 59.671 43.478 0.00 0.00 0.00 3.10
486 576 3.683802 AGAATCTTGTTGCCTTGGAGAG 58.316 45.455 0.00 0.00 0.00 3.20
487 577 3.795688 AGAATCTTGTTGCCTTGGAGA 57.204 42.857 0.00 0.00 0.00 3.71
488 578 3.944015 CCTAGAATCTTGTTGCCTTGGAG 59.056 47.826 0.00 0.00 0.00 3.86
489 579 3.873801 GCCTAGAATCTTGTTGCCTTGGA 60.874 47.826 0.00 0.00 0.00 3.53
490 580 2.424956 GCCTAGAATCTTGTTGCCTTGG 59.575 50.000 0.00 0.00 0.00 3.61
491 581 3.350833 AGCCTAGAATCTTGTTGCCTTG 58.649 45.455 0.00 0.00 0.00 3.61
492 582 3.728385 AGCCTAGAATCTTGTTGCCTT 57.272 42.857 0.00 0.00 0.00 4.35
493 583 4.033709 TCTAGCCTAGAATCTTGTTGCCT 58.966 43.478 0.00 0.00 0.00 4.75
494 584 4.408182 TCTAGCCTAGAATCTTGTTGCC 57.592 45.455 0.00 0.00 0.00 4.52
495 585 5.605534 TCATCTAGCCTAGAATCTTGTTGC 58.394 41.667 5.37 0.00 38.50 4.17
496 586 5.695816 GCTCATCTAGCCTAGAATCTTGTTG 59.304 44.000 5.37 0.00 46.25 3.33
497 587 5.852827 GCTCATCTAGCCTAGAATCTTGTT 58.147 41.667 5.37 0.00 46.25 2.83
498 588 5.467035 GCTCATCTAGCCTAGAATCTTGT 57.533 43.478 5.37 0.00 46.25 3.16
546 704 4.475135 GGGCCTCCTCGCACTTCC 62.475 72.222 0.84 0.00 0.00 3.46
591 752 3.682315 CGTCGGCGCTCGCATTAG 61.682 66.667 16.36 4.54 44.11 1.73
700 861 2.954684 GCTGATGACGGTGACCCCA 61.955 63.158 0.00 0.00 0.00 4.96
764 926 2.675772 GACGGTGGAGACGAGGGT 60.676 66.667 0.00 0.00 34.93 4.34
945 7187 2.661537 CACAACGTCTCCAGCGCA 60.662 61.111 11.47 0.00 0.00 6.09
1101 7343 2.287117 ATCATGGGGTCCTGGCCA 60.287 61.111 4.71 4.71 0.00 5.36
1140 7382 1.043816 CAGGGATGTACCAGAGCGAT 58.956 55.000 0.00 0.00 41.20 4.58
1182 7424 1.899814 AGGTACATCTGGAGCGTGAAA 59.100 47.619 0.00 0.00 0.00 2.69
1231 7473 1.202348 GGTGACAAATGCAAGGTAGGC 59.798 52.381 0.00 0.00 0.00 3.93
1531 7787 0.661020 ATAAAATGTAGGCGCGCACC 59.339 50.000 34.42 19.64 0.00 5.01
1556 7812 9.129209 GACAAACAGAATTTTAATAAGGACAGC 57.871 33.333 0.00 0.00 0.00 4.40
1574 7830 6.651755 ATGCAAACAAGAAAAGACAAACAG 57.348 33.333 0.00 0.00 0.00 3.16
1628 7885 0.463833 CCCGGTAAGGAGCACCAATC 60.464 60.000 2.07 0.00 45.00 2.67
1662 7919 1.569479 GAGCGTCAAGTGCAACCTCC 61.569 60.000 0.00 0.00 37.80 4.30
1789 8067 9.504708 GACTAGTGATTAGCTACTGACCTATTA 57.495 37.037 0.00 0.00 32.25 0.98
1790 8068 7.449086 GGACTAGTGATTAGCTACTGACCTATT 59.551 40.741 0.00 0.00 32.25 1.73
1803 8081 9.770097 AAATGACATATGTGGACTAGTGATTAG 57.230 33.333 14.43 0.00 35.39 1.73
1812 8090 8.635765 AAACAGTAAAATGACATATGTGGACT 57.364 30.769 14.43 4.33 0.00 3.85
1830 8108 7.277098 GCGACAAGGAAATACTATGAAACAGTA 59.723 37.037 0.00 0.00 33.22 2.74
1957 8240 6.928348 TCTAAGATGAACAAGTTACCCTGA 57.072 37.500 0.00 0.00 0.00 3.86
2028 8317 9.946165 CTCTATAACACACAAATCACTATCGTA 57.054 33.333 0.00 0.00 0.00 3.43
2030 8319 8.746751 CACTCTATAACACACAAATCACTATCG 58.253 37.037 0.00 0.00 0.00 2.92
2107 8397 5.989168 GGATGTGGTGACGACATTTATGATA 59.011 40.000 14.32 0.00 33.95 2.15
2128 8418 3.525199 ACACAAGGCCTATTGAGAAGGAT 59.475 43.478 18.31 0.00 36.08 3.24
2168 8458 0.444260 GAAAGCTTTCCGCGGAAGAG 59.556 55.000 36.54 32.51 45.59 2.85
2377 8669 7.731054 ACTGGTATAAAAGGCAAATGTTTTGA 58.269 30.769 4.24 0.00 0.00 2.69
2524 8820 0.953471 TATTGTCAGGTGCGTGTGGC 60.953 55.000 0.00 0.00 43.96 5.01
2525 8821 1.518325 TTATTGTCAGGTGCGTGTGG 58.482 50.000 0.00 0.00 0.00 4.17
2526 8822 3.829886 AATTATTGTCAGGTGCGTGTG 57.170 42.857 0.00 0.00 0.00 3.82
2527 8823 5.428253 AGATAATTATTGTCAGGTGCGTGT 58.572 37.500 0.00 0.00 0.00 4.49
2528 8824 5.991328 AGATAATTATTGTCAGGTGCGTG 57.009 39.130 0.00 0.00 0.00 5.34
2529 8825 6.482308 GGTAAGATAATTATTGTCAGGTGCGT 59.518 38.462 0.00 0.00 0.00 5.24
2530 8826 6.481976 TGGTAAGATAATTATTGTCAGGTGCG 59.518 38.462 0.00 0.00 0.00 5.34
2531 8827 7.801716 TGGTAAGATAATTATTGTCAGGTGC 57.198 36.000 0.00 0.00 0.00 5.01
2532 8828 9.559732 TGATGGTAAGATAATTATTGTCAGGTG 57.440 33.333 0.00 0.00 0.00 4.00
2533 8829 9.561069 GTGATGGTAAGATAATTATTGTCAGGT 57.439 33.333 0.00 0.00 0.00 4.00
2534 8830 9.559732 TGTGATGGTAAGATAATTATTGTCAGG 57.440 33.333 0.00 0.00 0.00 3.86
2548 8844 9.330063 GTTCTTTGATATCATGTGATGGTAAGA 57.670 33.333 6.17 6.44 36.05 2.10
2549 8845 9.112725 TGTTCTTTGATATCATGTGATGGTAAG 57.887 33.333 6.17 4.14 36.05 2.34
2550 8846 9.631257 ATGTTCTTTGATATCATGTGATGGTAA 57.369 29.630 6.17 0.00 36.05 2.85
2552 8848 9.631257 TTATGTTCTTTGATATCATGTGATGGT 57.369 29.630 6.17 0.00 36.05 3.55
2553 8849 9.888878 GTTATGTTCTTTGATATCATGTGATGG 57.111 33.333 6.17 0.00 36.05 3.51
2554 8850 9.888878 GGTTATGTTCTTTGATATCATGTGATG 57.111 33.333 6.17 0.00 36.05 3.07
2555 8851 9.857656 AGGTTATGTTCTTTGATATCATGTGAT 57.142 29.630 6.17 0.68 38.51 3.06
2558 8854 9.784531 CCTAGGTTATGTTCTTTGATATCATGT 57.215 33.333 6.17 0.00 0.00 3.21
2563 8859 9.289782 GCAATCCTAGGTTATGTTCTTTGATAT 57.710 33.333 9.08 0.00 0.00 1.63
2564 8860 8.494433 AGCAATCCTAGGTTATGTTCTTTGATA 58.506 33.333 9.08 0.00 0.00 2.15
2565 8861 7.349598 AGCAATCCTAGGTTATGTTCTTTGAT 58.650 34.615 9.08 0.00 0.00 2.57
2566 8862 6.721318 AGCAATCCTAGGTTATGTTCTTTGA 58.279 36.000 9.08 0.00 0.00 2.69
2567 8863 6.038714 GGAGCAATCCTAGGTTATGTTCTTTG 59.961 42.308 9.08 0.00 0.00 2.77
2568 8864 6.122964 GGAGCAATCCTAGGTTATGTTCTTT 58.877 40.000 9.08 0.00 0.00 2.52
2569 8865 5.191722 TGGAGCAATCCTAGGTTATGTTCTT 59.808 40.000 9.08 0.00 0.00 2.52
2570 8866 4.721776 TGGAGCAATCCTAGGTTATGTTCT 59.278 41.667 9.08 0.61 0.00 3.01
2571 8867 5.036117 TGGAGCAATCCTAGGTTATGTTC 57.964 43.478 9.08 12.80 0.00 3.18
2572 8868 5.191722 TCTTGGAGCAATCCTAGGTTATGTT 59.808 40.000 9.08 4.55 34.21 2.71
2573 8869 4.721776 TCTTGGAGCAATCCTAGGTTATGT 59.278 41.667 9.08 0.00 34.21 2.29
2574 8870 5.296151 TCTTGGAGCAATCCTAGGTTATG 57.704 43.478 9.08 7.68 34.21 1.90
2575 8871 5.370880 ACATCTTGGAGCAATCCTAGGTTAT 59.629 40.000 9.08 0.00 34.21 1.89
2576 8872 4.721776 ACATCTTGGAGCAATCCTAGGTTA 59.278 41.667 9.08 0.00 34.21 2.85
2577 8873 3.525199 ACATCTTGGAGCAATCCTAGGTT 59.475 43.478 9.08 0.00 34.21 3.50
2578 8874 3.118531 ACATCTTGGAGCAATCCTAGGT 58.881 45.455 9.08 0.00 34.21 3.08
2579 8875 3.853355 ACATCTTGGAGCAATCCTAGG 57.147 47.619 0.82 0.82 34.21 3.02
2580 8876 5.543507 ACTACATCTTGGAGCAATCCTAG 57.456 43.478 0.01 0.01 29.04 3.02
2581 8877 5.957771 AACTACATCTTGGAGCAATCCTA 57.042 39.130 0.00 0.00 29.04 2.94
2582 8878 4.851639 AACTACATCTTGGAGCAATCCT 57.148 40.909 0.00 0.00 29.04 3.24
2583 8879 6.058183 ACATAACTACATCTTGGAGCAATCC 58.942 40.000 0.00 0.00 29.04 3.01
2584 8880 7.559590 AACATAACTACATCTTGGAGCAATC 57.440 36.000 0.00 0.00 29.04 2.67
2585 8881 8.267894 AGTAACATAACTACATCTTGGAGCAAT 58.732 33.333 0.00 0.00 29.04 3.56
2586 8882 7.620880 AGTAACATAACTACATCTTGGAGCAA 58.379 34.615 0.00 0.00 29.04 3.91
2587 8883 7.182817 AGTAACATAACTACATCTTGGAGCA 57.817 36.000 0.00 0.00 29.04 4.26
2635 8931 9.566530 GCAAAACATGTCCAAATTTAAGTTTTT 57.433 25.926 0.00 0.00 36.23 1.94
2636 8932 8.734386 TGCAAAACATGTCCAAATTTAAGTTTT 58.266 25.926 0.00 0.00 38.14 2.43
2637 8933 8.273780 TGCAAAACATGTCCAAATTTAAGTTT 57.726 26.923 0.00 0.00 0.00 2.66
2638 8934 7.856145 TGCAAAACATGTCCAAATTTAAGTT 57.144 28.000 0.00 0.00 0.00 2.66
2639 8935 7.856145 TTGCAAAACATGTCCAAATTTAAGT 57.144 28.000 0.00 0.00 0.00 2.24
2640 8936 9.565213 TTTTTGCAAAACATGTCCAAATTTAAG 57.435 25.926 23.79 0.00 0.00 1.85
2641 8937 9.565213 CTTTTTGCAAAACATGTCCAAATTTAA 57.435 25.926 23.79 3.13 0.00 1.52
2642 8938 8.734386 ACTTTTTGCAAAACATGTCCAAATTTA 58.266 25.926 23.79 3.76 0.00 1.40
2643 8939 7.541437 CACTTTTTGCAAAACATGTCCAAATTT 59.459 29.630 23.79 0.00 0.00 1.82
2644 8940 7.028361 CACTTTTTGCAAAACATGTCCAAATT 58.972 30.769 23.79 0.00 0.00 1.82
2645 8941 6.150809 ACACTTTTTGCAAAACATGTCCAAAT 59.849 30.769 23.79 5.87 0.00 2.32
2646 8942 5.471456 ACACTTTTTGCAAAACATGTCCAAA 59.529 32.000 23.79 5.61 0.00 3.28
2647 8943 4.999950 ACACTTTTTGCAAAACATGTCCAA 59.000 33.333 23.79 6.32 0.00 3.53
2648 8944 4.573900 ACACTTTTTGCAAAACATGTCCA 58.426 34.783 23.79 7.05 0.00 4.02
2649 8945 5.234116 CCTACACTTTTTGCAAAACATGTCC 59.766 40.000 29.79 0.00 31.97 4.02
2650 8946 5.234116 CCCTACACTTTTTGCAAAACATGTC 59.766 40.000 29.79 0.00 31.97 3.06
2651 8947 5.105146 TCCCTACACTTTTTGCAAAACATGT 60.105 36.000 29.23 29.23 33.36 3.21
2652 8948 5.355596 TCCCTACACTTTTTGCAAAACATG 58.644 37.500 23.79 23.67 0.00 3.21
2653 8949 5.606348 TCCCTACACTTTTTGCAAAACAT 57.394 34.783 23.79 12.21 0.00 2.71
2654 8950 5.407407 TTCCCTACACTTTTTGCAAAACA 57.593 34.783 23.79 13.80 0.00 2.83
2655 8951 6.729391 TTTTCCCTACACTTTTTGCAAAAC 57.271 33.333 23.79 0.00 0.00 2.43
2656 8952 7.391833 ACATTTTTCCCTACACTTTTTGCAAAA 59.608 29.630 20.46 20.46 0.00 2.44
2657 8953 6.881602 ACATTTTTCCCTACACTTTTTGCAAA 59.118 30.769 8.05 8.05 0.00 3.68
2658 8954 6.410540 ACATTTTTCCCTACACTTTTTGCAA 58.589 32.000 0.00 0.00 0.00 4.08
2659 8955 5.983540 ACATTTTTCCCTACACTTTTTGCA 58.016 33.333 0.00 0.00 0.00 4.08
2660 8956 8.426881 TTTACATTTTTCCCTACACTTTTTGC 57.573 30.769 0.00 0.00 0.00 3.68
2662 8958 9.089601 CGTTTTACATTTTTCCCTACACTTTTT 57.910 29.630 0.00 0.00 0.00 1.94
2663 8959 7.707464 CCGTTTTACATTTTTCCCTACACTTTT 59.293 33.333 0.00 0.00 0.00 2.27
2664 8960 7.204604 CCGTTTTACATTTTTCCCTACACTTT 58.795 34.615 0.00 0.00 0.00 2.66
2665 8961 6.736519 GCCGTTTTACATTTTTCCCTACACTT 60.737 38.462 0.00 0.00 0.00 3.16
2666 8962 5.278610 GCCGTTTTACATTTTTCCCTACACT 60.279 40.000 0.00 0.00 0.00 3.55
2667 8963 4.919168 GCCGTTTTACATTTTTCCCTACAC 59.081 41.667 0.00 0.00 0.00 2.90
2668 8964 4.828387 AGCCGTTTTACATTTTTCCCTACA 59.172 37.500 0.00 0.00 0.00 2.74
2669 8965 5.381174 AGCCGTTTTACATTTTTCCCTAC 57.619 39.130 0.00 0.00 0.00 3.18
2670 8966 8.676401 GTTATAGCCGTTTTACATTTTTCCCTA 58.324 33.333 0.00 0.00 0.00 3.53
2671 8967 7.395206 AGTTATAGCCGTTTTACATTTTTCCCT 59.605 33.333 0.00 0.00 0.00 4.20
2672 8968 7.541162 AGTTATAGCCGTTTTACATTTTTCCC 58.459 34.615 0.00 0.00 0.00 3.97
2673 8969 8.975410 AAGTTATAGCCGTTTTACATTTTTCC 57.025 30.769 0.00 0.00 0.00 3.13
2676 8972 8.705134 GCAAAAGTTATAGCCGTTTTACATTTT 58.295 29.630 0.00 0.00 0.00 1.82
2677 8973 7.868415 TGCAAAAGTTATAGCCGTTTTACATTT 59.132 29.630 0.00 0.00 0.00 2.32
2678 8974 7.371936 TGCAAAAGTTATAGCCGTTTTACATT 58.628 30.769 0.00 0.00 0.00 2.71
2679 8975 6.915349 TGCAAAAGTTATAGCCGTTTTACAT 58.085 32.000 0.00 0.00 0.00 2.29
2680 8976 6.315091 TGCAAAAGTTATAGCCGTTTTACA 57.685 33.333 0.00 0.00 0.00 2.41
2681 8977 7.163032 CGTATGCAAAAGTTATAGCCGTTTTAC 59.837 37.037 0.00 0.00 0.00 2.01
2682 8978 7.064371 TCGTATGCAAAAGTTATAGCCGTTTTA 59.936 33.333 0.00 0.00 0.00 1.52
2683 8979 6.025280 CGTATGCAAAAGTTATAGCCGTTTT 58.975 36.000 0.00 0.00 0.00 2.43
2684 8980 5.352016 TCGTATGCAAAAGTTATAGCCGTTT 59.648 36.000 0.00 0.00 0.00 3.60
2685 8981 4.871557 TCGTATGCAAAAGTTATAGCCGTT 59.128 37.500 0.00 0.00 0.00 4.44
2686 8982 4.435425 TCGTATGCAAAAGTTATAGCCGT 58.565 39.130 0.00 0.00 0.00 5.68
2687 8983 5.050363 ACATCGTATGCAAAAGTTATAGCCG 60.050 40.000 0.00 0.00 0.00 5.52
2688 8984 6.018262 TGACATCGTATGCAAAAGTTATAGCC 60.018 38.462 0.00 0.00 0.00 3.93
2689 8985 6.943981 TGACATCGTATGCAAAAGTTATAGC 58.056 36.000 0.00 0.00 0.00 2.97
2690 8986 8.352752 TCTGACATCGTATGCAAAAGTTATAG 57.647 34.615 0.00 0.00 0.00 1.31
2691 8987 8.710835 TTCTGACATCGTATGCAAAAGTTATA 57.289 30.769 0.00 0.00 0.00 0.98
2692 8988 7.609760 TTCTGACATCGTATGCAAAAGTTAT 57.390 32.000 0.00 0.00 0.00 1.89
2693 8989 7.428282 TTTCTGACATCGTATGCAAAAGTTA 57.572 32.000 0.00 0.00 0.00 2.24
2694 8990 5.940192 TTCTGACATCGTATGCAAAAGTT 57.060 34.783 0.00 0.00 0.00 2.66
2695 8991 5.940192 TTTCTGACATCGTATGCAAAAGT 57.060 34.783 0.00 0.00 0.00 2.66
2726 9022 9.853555 TTTTCGTGCTGAACATTTTGATATATT 57.146 25.926 0.00 0.00 35.97 1.28
2728 9024 9.502145 GATTTTCGTGCTGAACATTTTGATATA 57.498 29.630 0.00 0.00 35.97 0.86
2729 9025 7.489113 GGATTTTCGTGCTGAACATTTTGATAT 59.511 33.333 0.00 0.00 35.97 1.63
2730 9026 6.806249 GGATTTTCGTGCTGAACATTTTGATA 59.194 34.615 0.00 0.00 35.97 2.15
2731 9027 5.634859 GGATTTTCGTGCTGAACATTTTGAT 59.365 36.000 0.00 0.00 35.97 2.57
2732 9028 4.981674 GGATTTTCGTGCTGAACATTTTGA 59.018 37.500 0.00 0.00 35.97 2.69
2733 9029 4.143556 CGGATTTTCGTGCTGAACATTTTG 60.144 41.667 0.00 0.00 35.97 2.44
2734 9030 3.980775 CGGATTTTCGTGCTGAACATTTT 59.019 39.130 0.00 0.00 35.97 1.82
2735 9031 3.564511 CGGATTTTCGTGCTGAACATTT 58.435 40.909 0.00 0.00 35.97 2.32
2736 9032 2.668279 GCGGATTTTCGTGCTGAACATT 60.668 45.455 0.00 0.00 35.97 2.71
2737 9033 1.135689 GCGGATTTTCGTGCTGAACAT 60.136 47.619 0.00 0.00 35.97 2.71
2738 9034 0.237235 GCGGATTTTCGTGCTGAACA 59.763 50.000 0.00 0.00 35.97 3.18
2739 9035 0.237235 TGCGGATTTTCGTGCTGAAC 59.763 50.000 0.00 0.00 35.97 3.18
2740 9036 1.130373 GATGCGGATTTTCGTGCTGAA 59.870 47.619 0.00 0.00 33.85 3.02
2741 9037 0.726827 GATGCGGATTTTCGTGCTGA 59.273 50.000 0.00 0.00 0.00 4.26
2742 9038 0.248215 GGATGCGGATTTTCGTGCTG 60.248 55.000 0.00 0.00 0.00 4.41
2743 9039 1.705337 CGGATGCGGATTTTCGTGCT 61.705 55.000 0.00 0.00 0.00 4.40
2744 9040 1.297598 CGGATGCGGATTTTCGTGC 60.298 57.895 0.00 0.00 0.00 5.34
2745 9041 0.301687 CTCGGATGCGGATTTTCGTG 59.698 55.000 6.82 0.00 0.00 4.35
2746 9042 0.108329 ACTCGGATGCGGATTTTCGT 60.108 50.000 6.82 0.00 0.00 3.85
2747 9043 1.006832 AACTCGGATGCGGATTTTCG 58.993 50.000 6.82 0.00 0.00 3.46
2748 9044 2.418628 TCAAACTCGGATGCGGATTTTC 59.581 45.455 6.82 0.00 0.00 2.29
2749 9045 2.161609 GTCAAACTCGGATGCGGATTTT 59.838 45.455 6.82 1.02 0.00 1.82
2750 9046 1.737793 GTCAAACTCGGATGCGGATTT 59.262 47.619 6.82 4.99 0.00 2.17
2751 9047 1.369625 GTCAAACTCGGATGCGGATT 58.630 50.000 6.82 0.00 0.00 3.01
2752 9048 0.806102 CGTCAAACTCGGATGCGGAT 60.806 55.000 6.82 0.00 0.00 4.18
2753 9049 1.445410 CGTCAAACTCGGATGCGGA 60.445 57.895 6.82 0.00 0.00 5.54
2754 9050 3.081133 CGTCAAACTCGGATGCGG 58.919 61.111 6.82 0.00 0.00 5.69
2761 9057 1.804326 CCGTAGGCCGTCAAACTCG 60.804 63.158 0.00 0.00 46.14 4.18
2762 9058 4.180496 CCGTAGGCCGTCAAACTC 57.820 61.111 0.00 0.00 46.14 3.01
2774 9070 2.723124 AAATTGCAAACAGGCCGTAG 57.277 45.000 1.71 0.00 0.00 3.51
2775 9071 3.460857 AAAAATTGCAAACAGGCCGTA 57.539 38.095 1.71 0.00 0.00 4.02
2776 9072 2.323968 AAAAATTGCAAACAGGCCGT 57.676 40.000 1.71 0.00 0.00 5.68
2852 9148 9.883142 AGTTTGACCAGATTTAACAAAAATTCA 57.117 25.926 0.00 0.00 33.40 2.57
2856 9152 9.757227 CCATAGTTTGACCAGATTTAACAAAAA 57.243 29.630 0.00 0.00 33.40 1.94
2857 9153 8.919145 ACCATAGTTTGACCAGATTTAACAAAA 58.081 29.630 0.00 0.00 33.40 2.44
2858 9154 8.472007 ACCATAGTTTGACCAGATTTAACAAA 57.528 30.769 0.00 0.00 0.00 2.83
2859 9155 7.721842 TGACCATAGTTTGACCAGATTTAACAA 59.278 33.333 0.00 0.00 0.00 2.83
2860 9156 7.227873 TGACCATAGTTTGACCAGATTTAACA 58.772 34.615 0.00 0.00 0.00 2.41
2861 9157 7.681939 TGACCATAGTTTGACCAGATTTAAC 57.318 36.000 0.00 0.00 0.00 2.01
2862 9158 8.573035 GTTTGACCATAGTTTGACCAGATTTAA 58.427 33.333 0.00 0.00 0.00 1.52
2863 9159 7.942341 AGTTTGACCATAGTTTGACCAGATTTA 59.058 33.333 0.00 0.00 0.00 1.40
2864 9160 6.777580 AGTTTGACCATAGTTTGACCAGATTT 59.222 34.615 0.00 0.00 0.00 2.17
2865 9161 6.306987 AGTTTGACCATAGTTTGACCAGATT 58.693 36.000 0.00 0.00 0.00 2.40
2866 9162 5.880901 AGTTTGACCATAGTTTGACCAGAT 58.119 37.500 0.00 0.00 0.00 2.90
2867 9163 5.304686 AGTTTGACCATAGTTTGACCAGA 57.695 39.130 0.00 0.00 0.00 3.86
2868 9164 6.231211 AGTAGTTTGACCATAGTTTGACCAG 58.769 40.000 0.00 0.00 0.00 4.00
2869 9165 6.182507 AGTAGTTTGACCATAGTTTGACCA 57.817 37.500 0.00 0.00 0.00 4.02
2870 9166 8.788325 ATAAGTAGTTTGACCATAGTTTGACC 57.212 34.615 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.