Multiple sequence alignment - TraesCS5D01G354200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G354200 chr5D 100.000 2550 0 0 1 2550 436577428 436579977 0.000000e+00 4710.0
1 TraesCS5D01G354200 chr5D 89.597 769 53 17 763 1519 436824390 436823637 0.000000e+00 952.0
2 TraesCS5D01G354200 chr5D 88.907 622 56 10 764 1383 436349245 436349855 0.000000e+00 754.0
3 TraesCS5D01G354200 chr5D 81.013 237 26 10 2226 2460 436823017 436822798 1.210000e-38 171.0
4 TraesCS5D01G354200 chr5B 91.251 983 39 21 1583 2550 530614134 530615084 0.000000e+00 1295.0
5 TraesCS5D01G354200 chr5B 93.655 788 41 6 776 1557 530613293 530614077 0.000000e+00 1170.0
6 TraesCS5D01G354200 chr5B 91.276 768 47 15 763 1519 530974387 530973629 0.000000e+00 1029.0
7 TraesCS5D01G354200 chr5B 87.760 768 67 18 764 1516 530609163 530609918 0.000000e+00 872.0
8 TraesCS5D01G354200 chr5B 88.198 627 62 9 764 1383 530334247 530334868 0.000000e+00 737.0
9 TraesCS5D01G354200 chr5B 84.452 566 63 17 842 1388 486283499 486282940 3.730000e-148 534.0
10 TraesCS5D01G354200 chr5B 95.392 217 10 0 546 762 530613024 530613240 1.880000e-91 346.0
11 TraesCS5D01G354200 chr5B 76.033 242 31 17 2226 2464 530972991 530972774 1.610000e-17 100.0
12 TraesCS5D01G354200 chr5B 86.585 82 10 1 2383 2463 530610644 530610725 3.490000e-14 89.8
13 TraesCS5D01G354200 chr5B 86.585 82 9 2 2384 2463 530610753 530610834 3.490000e-14 89.8
14 TraesCS5D01G354200 chr5A 86.929 964 73 24 763 1685 551041183 551042134 0.000000e+00 1033.0
15 TraesCS5D01G354200 chr5A 87.922 770 60 20 763 1507 552078754 552077993 0.000000e+00 876.0
16 TraesCS5D01G354200 chr5A 90.150 599 40 14 800 1383 550801795 550802389 0.000000e+00 761.0
17 TraesCS5D01G354200 chr5A 92.494 413 17 10 2142 2550 551042430 551042832 1.700000e-161 579.0
18 TraesCS5D01G354200 chr5A 81.010 416 53 11 348 762 551040749 551041139 8.860000e-80 307.0
19 TraesCS5D01G354200 chr5A 86.347 271 16 12 1813 2079 551042157 551042410 2.500000e-70 276.0
20 TraesCS5D01G354200 chr5A 85.271 129 14 3 2332 2459 552077358 552077234 7.410000e-26 128.0
21 TraesCS5D01G354200 chr1B 91.165 498 25 6 1784 2275 148506901 148507385 0.000000e+00 658.0
22 TraesCS5D01G354200 chr3B 89.759 498 32 6 1784 2275 371042264 371041780 1.000000e-173 619.0
23 TraesCS5D01G354200 chr7B 86.935 199 15 4 1784 1982 195991931 195991744 1.990000e-51 213.0
24 TraesCS5D01G354200 chr4B 85.930 199 17 3 1784 1982 338507516 338507329 4.300000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G354200 chr5D 436577428 436579977 2549 False 4710.000000 4710 100.000000 1 2550 1 chr5D.!!$F2 2549
1 TraesCS5D01G354200 chr5D 436349245 436349855 610 False 754.000000 754 88.907000 764 1383 1 chr5D.!!$F1 619
2 TraesCS5D01G354200 chr5D 436822798 436824390 1592 True 561.500000 952 85.305000 763 2460 2 chr5D.!!$R1 1697
3 TraesCS5D01G354200 chr5B 530334247 530334868 621 False 737.000000 737 88.198000 764 1383 1 chr5B.!!$F1 619
4 TraesCS5D01G354200 chr5B 530609163 530615084 5921 False 643.766667 1295 90.204667 546 2550 6 chr5B.!!$F2 2004
5 TraesCS5D01G354200 chr5B 530972774 530974387 1613 True 564.500000 1029 83.654500 763 2464 2 chr5B.!!$R2 1701
6 TraesCS5D01G354200 chr5B 486282940 486283499 559 True 534.000000 534 84.452000 842 1388 1 chr5B.!!$R1 546
7 TraesCS5D01G354200 chr5A 550801795 550802389 594 False 761.000000 761 90.150000 800 1383 1 chr5A.!!$F1 583
8 TraesCS5D01G354200 chr5A 551040749 551042832 2083 False 548.750000 1033 86.695000 348 2550 4 chr5A.!!$F2 2202
9 TraesCS5D01G354200 chr5A 552077234 552078754 1520 True 502.000000 876 86.596500 763 2459 2 chr5A.!!$R1 1696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.030092 ATTGAGGGGTAGCTAGGCCA 60.03 55.0 5.01 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 6398 0.107654 AAGCCACGGAATCAGTAGGC 60.108 55.0 14.95 14.95 42.31 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 6.913873 ATTAAACATGCATTTGAATCTGGC 57.086 33.333 0.00 0.00 0.00 4.85
64 65 2.572191 ACATGCATTTGAATCTGGCG 57.428 45.000 0.00 0.00 0.00 5.69
65 66 1.205657 CATGCATTTGAATCTGGCGC 58.794 50.000 0.00 0.00 0.00 6.53
66 67 0.818938 ATGCATTTGAATCTGGCGCA 59.181 45.000 10.83 0.00 0.00 6.09
67 68 0.602060 TGCATTTGAATCTGGCGCAA 59.398 45.000 10.83 0.00 0.00 4.85
68 69 1.205179 TGCATTTGAATCTGGCGCAAT 59.795 42.857 10.83 0.00 0.00 3.56
69 70 1.856597 GCATTTGAATCTGGCGCAATC 59.143 47.619 10.83 0.00 0.00 2.67
70 71 2.736081 GCATTTGAATCTGGCGCAATCA 60.736 45.455 10.83 2.49 0.00 2.57
71 72 2.925578 TTTGAATCTGGCGCAATCAG 57.074 45.000 10.83 7.89 0.00 2.90
72 73 0.452987 TTGAATCTGGCGCAATCAGC 59.547 50.000 10.83 0.00 40.87 4.26
73 74 0.677414 TGAATCTGGCGCAATCAGCA 60.677 50.000 10.83 0.00 46.13 4.41
74 75 0.666913 GAATCTGGCGCAATCAGCAT 59.333 50.000 10.83 0.00 46.13 3.79
75 76 1.066605 GAATCTGGCGCAATCAGCATT 59.933 47.619 10.83 9.18 46.13 3.56
76 77 0.384309 ATCTGGCGCAATCAGCATTG 59.616 50.000 10.83 0.00 46.13 2.82
77 78 0.677414 TCTGGCGCAATCAGCATTGA 60.677 50.000 10.83 0.00 46.13 2.57
78 79 0.171679 CTGGCGCAATCAGCATTGAA 59.828 50.000 10.83 0.00 46.13 2.69
79 80 0.109179 TGGCGCAATCAGCATTGAAC 60.109 50.000 10.83 0.00 46.13 3.18
80 81 0.171903 GGCGCAATCAGCATTGAACT 59.828 50.000 10.83 0.00 46.13 3.01
81 82 1.265568 GCGCAATCAGCATTGAACTG 58.734 50.000 0.30 0.00 46.13 3.16
82 83 1.265568 CGCAATCAGCATTGAACTGC 58.734 50.000 1.12 2.95 46.13 4.40
83 84 1.401800 CGCAATCAGCATTGAACTGCA 60.402 47.619 11.50 0.00 44.77 4.41
84 85 1.990563 GCAATCAGCATTGAACTGCAC 59.009 47.619 1.12 0.00 44.77 4.57
85 86 2.608506 GCAATCAGCATTGAACTGCACA 60.609 45.455 1.12 0.00 44.77 4.57
86 87 3.644823 CAATCAGCATTGAACTGCACAA 58.355 40.909 0.00 0.00 44.77 3.33
87 88 4.242475 CAATCAGCATTGAACTGCACAAT 58.758 39.130 0.00 0.00 44.77 2.71
88 89 4.530710 ATCAGCATTGAACTGCACAATT 57.469 36.364 0.00 0.00 44.77 2.32
89 90 4.325028 TCAGCATTGAACTGCACAATTT 57.675 36.364 0.00 0.00 44.77 1.82
90 91 4.052608 TCAGCATTGAACTGCACAATTTG 58.947 39.130 0.00 0.00 44.77 2.32
91 92 3.805422 CAGCATTGAACTGCACAATTTGT 59.195 39.130 0.00 0.00 44.77 2.83
92 93 4.271533 CAGCATTGAACTGCACAATTTGTT 59.728 37.500 0.00 0.00 44.77 2.83
93 94 4.271533 AGCATTGAACTGCACAATTTGTTG 59.728 37.500 0.00 0.00 44.77 3.33
94 95 4.270566 GCATTGAACTGCACAATTTGTTGA 59.729 37.500 0.00 0.00 41.87 3.18
95 96 5.049954 GCATTGAACTGCACAATTTGTTGAT 60.050 36.000 0.00 0.00 41.87 2.57
96 97 6.145858 GCATTGAACTGCACAATTTGTTGATA 59.854 34.615 0.00 0.00 41.87 2.15
97 98 7.307278 GCATTGAACTGCACAATTTGTTGATAA 60.307 33.333 0.00 0.00 41.87 1.75
98 99 8.549548 CATTGAACTGCACAATTTGTTGATAAA 58.450 29.630 0.00 0.00 36.07 1.40
99 100 8.659925 TTGAACTGCACAATTTGTTGATAAAT 57.340 26.923 0.00 0.00 31.87 1.40
100 101 8.659925 TGAACTGCACAATTTGTTGATAAATT 57.340 26.923 0.00 0.00 40.00 1.82
101 102 9.755804 TGAACTGCACAATTTGTTGATAAATTA 57.244 25.926 0.00 0.00 37.97 1.40
126 127 2.434774 GGGGGAGTCGCCACTTTT 59.565 61.111 26.04 0.00 44.52 2.27
127 128 1.971695 GGGGGAGTCGCCACTTTTG 60.972 63.158 26.04 0.00 44.52 2.44
128 129 2.626780 GGGGAGTCGCCACTTTTGC 61.627 63.158 20.82 0.00 36.99 3.68
129 130 2.626780 GGGAGTCGCCACTTTTGCC 61.627 63.158 0.00 0.00 38.95 4.52
130 131 2.626780 GGAGTCGCCACTTTTGCCC 61.627 63.158 0.00 0.00 36.34 5.36
131 132 1.600916 GAGTCGCCACTTTTGCCCT 60.601 57.895 0.00 0.00 30.63 5.19
132 133 1.578206 GAGTCGCCACTTTTGCCCTC 61.578 60.000 0.00 0.00 30.63 4.30
133 134 2.668212 TCGCCACTTTTGCCCTCG 60.668 61.111 0.00 0.00 0.00 4.63
134 135 4.404654 CGCCACTTTTGCCCTCGC 62.405 66.667 0.00 0.00 0.00 5.03
135 136 4.404654 GCCACTTTTGCCCTCGCG 62.405 66.667 0.00 0.00 38.08 5.87
136 137 3.737172 CCACTTTTGCCCTCGCGG 61.737 66.667 6.13 0.00 38.08 6.46
137 138 2.978010 CACTTTTGCCCTCGCGGT 60.978 61.111 6.13 0.00 38.08 5.68
138 139 2.203294 ACTTTTGCCCTCGCGGTT 60.203 55.556 6.13 0.00 38.08 4.44
139 140 2.255252 CTTTTGCCCTCGCGGTTG 59.745 61.111 6.13 0.00 38.08 3.77
140 141 3.896863 CTTTTGCCCTCGCGGTTGC 62.897 63.158 6.13 7.01 38.08 4.17
157 158 2.186125 CCGGCCGGAGTAAAGGTC 59.814 66.667 41.82 0.00 37.50 3.85
158 159 2.186125 CGGCCGGAGTAAAGGTCC 59.814 66.667 20.10 0.00 0.00 4.46
159 160 2.588439 GGCCGGAGTAAAGGTCCC 59.412 66.667 5.05 0.00 0.00 4.46
160 161 2.186125 GCCGGAGTAAAGGTCCCG 59.814 66.667 5.05 0.00 41.47 5.14
161 162 2.186125 CCGGAGTAAAGGTCCCGC 59.814 66.667 0.00 0.00 40.56 6.13
162 163 2.186125 CGGAGTAAAGGTCCCGCC 59.814 66.667 0.00 0.00 35.29 6.13
163 164 2.186125 GGAGTAAAGGTCCCGCCG 59.814 66.667 0.00 0.00 43.70 6.46
164 165 2.510918 GAGTAAAGGTCCCGCCGC 60.511 66.667 0.00 0.00 43.70 6.53
165 166 3.001406 AGTAAAGGTCCCGCCGCT 61.001 61.111 0.00 0.00 43.70 5.52
166 167 2.046604 GTAAAGGTCCCGCCGCTT 60.047 61.111 0.00 0.00 43.70 4.68
167 168 2.046700 TAAAGGTCCCGCCGCTTG 60.047 61.111 0.00 0.00 43.70 4.01
171 172 4.849310 GGTCCCGCCGCTTGCATA 62.849 66.667 0.00 0.00 41.33 3.14
172 173 2.591715 GTCCCGCCGCTTGCATAT 60.592 61.111 0.00 0.00 41.33 1.78
173 174 2.280797 TCCCGCCGCTTGCATATC 60.281 61.111 0.00 0.00 41.33 1.63
174 175 2.281070 CCCGCCGCTTGCATATCT 60.281 61.111 0.00 0.00 41.33 1.98
175 176 2.320587 CCCGCCGCTTGCATATCTC 61.321 63.158 0.00 0.00 41.33 2.75
176 177 1.301244 CCGCCGCTTGCATATCTCT 60.301 57.895 0.00 0.00 41.33 3.10
177 178 0.882042 CCGCCGCTTGCATATCTCTT 60.882 55.000 0.00 0.00 41.33 2.85
178 179 0.234106 CGCCGCTTGCATATCTCTTG 59.766 55.000 0.00 0.00 41.33 3.02
179 180 1.303309 GCCGCTTGCATATCTCTTGT 58.697 50.000 0.00 0.00 40.77 3.16
180 181 1.672881 GCCGCTTGCATATCTCTTGTT 59.327 47.619 0.00 0.00 40.77 2.83
181 182 2.540361 GCCGCTTGCATATCTCTTGTTG 60.540 50.000 0.00 0.00 40.77 3.33
182 183 2.032550 CCGCTTGCATATCTCTTGTTGG 59.967 50.000 0.00 0.00 0.00 3.77
183 184 2.540361 CGCTTGCATATCTCTTGTTGGC 60.540 50.000 0.00 0.00 0.00 4.52
184 185 2.223665 GCTTGCATATCTCTTGTTGGCC 60.224 50.000 0.00 0.00 0.00 5.36
185 186 2.804986 TGCATATCTCTTGTTGGCCA 57.195 45.000 0.00 0.00 0.00 5.36
186 187 2.368439 TGCATATCTCTTGTTGGCCAC 58.632 47.619 3.88 0.75 0.00 5.01
187 188 2.025981 TGCATATCTCTTGTTGGCCACT 60.026 45.455 3.88 0.00 0.00 4.00
188 189 2.615912 GCATATCTCTTGTTGGCCACTC 59.384 50.000 3.88 1.78 0.00 3.51
189 190 2.672961 TATCTCTTGTTGGCCACTCG 57.327 50.000 3.88 0.00 0.00 4.18
190 191 0.674895 ATCTCTTGTTGGCCACTCGC 60.675 55.000 3.88 0.00 0.00 5.03
218 219 4.742201 CACTCCGGCGGTGACCAG 62.742 72.222 32.12 21.05 36.89 4.00
220 221 4.436998 CTCCGGCGGTGACCAGTC 62.437 72.222 27.32 0.00 0.00 3.51
226 227 4.436998 CGGTGACCAGTCCGCCTC 62.437 72.222 1.11 0.00 40.28 4.70
227 228 4.083862 GGTGACCAGTCCGCCTCC 62.084 72.222 0.00 0.00 0.00 4.30
228 229 4.436998 GTGACCAGTCCGCCTCCG 62.437 72.222 0.00 0.00 0.00 4.63
229 230 4.671590 TGACCAGTCCGCCTCCGA 62.672 66.667 0.00 0.00 36.29 4.55
230 231 3.827898 GACCAGTCCGCCTCCGAG 61.828 72.222 0.00 0.00 36.29 4.63
231 232 4.361971 ACCAGTCCGCCTCCGAGA 62.362 66.667 0.00 0.00 36.29 4.04
232 233 2.835431 CCAGTCCGCCTCCGAGAT 60.835 66.667 0.00 0.00 36.29 2.75
233 234 2.427245 CCAGTCCGCCTCCGAGATT 61.427 63.158 0.00 0.00 36.29 2.40
234 235 1.227089 CAGTCCGCCTCCGAGATTG 60.227 63.158 0.00 0.00 36.29 2.67
235 236 1.379977 AGTCCGCCTCCGAGATTGA 60.380 57.895 0.00 0.00 36.29 2.57
236 237 1.066587 GTCCGCCTCCGAGATTGAG 59.933 63.158 0.00 0.00 36.29 3.02
240 241 4.382852 CCTCCGAGATTGAGGGGT 57.617 61.111 0.00 0.00 44.73 4.95
241 242 3.533697 CCTCCGAGATTGAGGGGTA 57.466 57.895 0.00 0.00 44.73 3.69
242 243 1.333177 CCTCCGAGATTGAGGGGTAG 58.667 60.000 0.00 0.00 44.73 3.18
243 244 0.676736 CTCCGAGATTGAGGGGTAGC 59.323 60.000 0.00 0.00 0.00 3.58
244 245 0.261991 TCCGAGATTGAGGGGTAGCT 59.738 55.000 0.00 0.00 0.00 3.32
245 246 1.497716 TCCGAGATTGAGGGGTAGCTA 59.502 52.381 0.00 0.00 0.00 3.32
246 247 1.889829 CCGAGATTGAGGGGTAGCTAG 59.110 57.143 0.00 0.00 0.00 3.42
247 248 1.889829 CGAGATTGAGGGGTAGCTAGG 59.110 57.143 0.00 0.00 0.00 3.02
248 249 1.621317 GAGATTGAGGGGTAGCTAGGC 59.379 57.143 0.00 0.00 0.00 3.93
249 250 0.687920 GATTGAGGGGTAGCTAGGCC 59.312 60.000 0.00 0.00 0.00 5.19
250 251 0.030092 ATTGAGGGGTAGCTAGGCCA 60.030 55.000 5.01 0.00 0.00 5.36
251 252 0.691078 TTGAGGGGTAGCTAGGCCAG 60.691 60.000 5.01 0.97 0.00 4.85
252 253 1.075151 GAGGGGTAGCTAGGCCAGT 60.075 63.158 5.01 0.00 0.00 4.00
253 254 1.383248 AGGGGTAGCTAGGCCAGTG 60.383 63.158 5.01 0.00 0.00 3.66
254 255 2.506472 GGGTAGCTAGGCCAGTGC 59.494 66.667 5.01 5.96 0.00 4.40
255 256 2.066999 GGGTAGCTAGGCCAGTGCT 61.067 63.158 18.55 18.55 40.43 4.40
256 257 1.443828 GGTAGCTAGGCCAGTGCTC 59.556 63.158 18.17 11.16 38.15 4.26
257 258 1.066587 GTAGCTAGGCCAGTGCTCG 59.933 63.158 18.17 0.00 38.15 5.03
258 259 2.786495 TAGCTAGGCCAGTGCTCGC 61.786 63.158 18.17 0.00 38.15 5.03
279 280 2.964978 GCCAAGCGCCAGTTTCAT 59.035 55.556 2.29 0.00 0.00 2.57
280 281 1.153958 GCCAAGCGCCAGTTTCATC 60.154 57.895 2.29 0.00 0.00 2.92
281 282 1.865788 GCCAAGCGCCAGTTTCATCA 61.866 55.000 2.29 0.00 0.00 3.07
282 283 0.169672 CCAAGCGCCAGTTTCATCAG 59.830 55.000 2.29 0.00 0.00 2.90
283 284 0.169672 CAAGCGCCAGTTTCATCAGG 59.830 55.000 2.29 0.00 0.00 3.86
284 285 1.589716 AAGCGCCAGTTTCATCAGGC 61.590 55.000 2.29 0.00 43.61 4.85
286 287 4.301505 GCCAGTTTCATCAGGCGA 57.698 55.556 0.00 0.00 37.41 5.54
287 288 2.555123 GCCAGTTTCATCAGGCGAA 58.445 52.632 0.00 0.00 37.41 4.70
288 289 1.098050 GCCAGTTTCATCAGGCGAAT 58.902 50.000 0.00 0.00 37.41 3.34
289 290 1.474077 GCCAGTTTCATCAGGCGAATT 59.526 47.619 0.00 0.00 37.41 2.17
290 291 2.478539 GCCAGTTTCATCAGGCGAATTC 60.479 50.000 0.00 0.00 37.41 2.17
291 292 2.098117 CCAGTTTCATCAGGCGAATTCC 59.902 50.000 0.00 0.00 0.00 3.01
292 293 2.098117 CAGTTTCATCAGGCGAATTCCC 59.902 50.000 0.00 2.39 0.00 3.97
293 294 2.025887 AGTTTCATCAGGCGAATTCCCT 60.026 45.455 9.08 9.08 0.00 4.20
294 295 2.755103 GTTTCATCAGGCGAATTCCCTT 59.245 45.455 11.53 0.00 0.00 3.95
295 296 2.042686 TCATCAGGCGAATTCCCTTG 57.957 50.000 11.53 4.57 0.00 3.61
296 297 1.281867 TCATCAGGCGAATTCCCTTGT 59.718 47.619 11.53 3.09 0.00 3.16
297 298 1.672881 CATCAGGCGAATTCCCTTGTC 59.327 52.381 11.53 0.00 0.00 3.18
298 299 0.984230 TCAGGCGAATTCCCTTGTCT 59.016 50.000 11.53 0.00 0.00 3.41
299 300 2.184533 TCAGGCGAATTCCCTTGTCTA 58.815 47.619 11.53 0.00 0.00 2.59
300 301 2.569853 TCAGGCGAATTCCCTTGTCTAA 59.430 45.455 11.53 0.00 0.00 2.10
301 302 3.008594 TCAGGCGAATTCCCTTGTCTAAA 59.991 43.478 11.53 0.00 0.00 1.85
302 303 3.756434 CAGGCGAATTCCCTTGTCTAAAA 59.244 43.478 11.53 0.00 0.00 1.52
303 304 4.010349 AGGCGAATTCCCTTGTCTAAAAG 58.990 43.478 9.08 0.00 0.00 2.27
304 305 3.756963 GGCGAATTCCCTTGTCTAAAAGT 59.243 43.478 0.00 0.00 0.00 2.66
305 306 4.379499 GGCGAATTCCCTTGTCTAAAAGTG 60.379 45.833 0.00 0.00 0.00 3.16
306 307 4.379499 GCGAATTCCCTTGTCTAAAAGTGG 60.379 45.833 0.00 0.00 0.00 4.00
307 308 4.379499 CGAATTCCCTTGTCTAAAAGTGGC 60.379 45.833 0.00 0.00 0.00 5.01
308 309 3.876309 TTCCCTTGTCTAAAAGTGGCT 57.124 42.857 0.00 0.00 0.00 4.75
309 310 3.876309 TCCCTTGTCTAAAAGTGGCTT 57.124 42.857 0.00 0.00 0.00 4.35
310 311 3.751518 TCCCTTGTCTAAAAGTGGCTTC 58.248 45.455 0.00 0.00 0.00 3.86
311 312 2.820197 CCCTTGTCTAAAAGTGGCTTCC 59.180 50.000 0.00 0.00 0.00 3.46
312 313 3.498661 CCCTTGTCTAAAAGTGGCTTCCT 60.499 47.826 0.00 0.00 0.00 3.36
313 314 3.753797 CCTTGTCTAAAAGTGGCTTCCTC 59.246 47.826 0.00 0.00 0.00 3.71
314 315 3.040147 TGTCTAAAAGTGGCTTCCTCG 57.960 47.619 0.00 0.00 0.00 4.63
315 316 2.631062 TGTCTAAAAGTGGCTTCCTCGA 59.369 45.455 0.00 0.00 0.00 4.04
316 317 3.260884 TGTCTAAAAGTGGCTTCCTCGAT 59.739 43.478 0.00 0.00 0.00 3.59
317 318 3.866327 GTCTAAAAGTGGCTTCCTCGATC 59.134 47.826 0.00 0.00 0.00 3.69
318 319 1.726853 AAAAGTGGCTTCCTCGATCG 58.273 50.000 9.36 9.36 0.00 3.69
319 320 0.895530 AAAGTGGCTTCCTCGATCGA 59.104 50.000 18.32 18.32 0.00 3.59
320 321 1.115467 AAGTGGCTTCCTCGATCGAT 58.885 50.000 19.78 0.00 0.00 3.59
321 322 0.671251 AGTGGCTTCCTCGATCGATC 59.329 55.000 19.78 15.68 0.00 3.69
322 323 0.385751 GTGGCTTCCTCGATCGATCA 59.614 55.000 24.40 5.07 0.00 2.92
323 324 1.111277 TGGCTTCCTCGATCGATCAA 58.889 50.000 24.40 12.89 0.00 2.57
324 325 1.688735 TGGCTTCCTCGATCGATCAAT 59.311 47.619 24.40 0.00 0.00 2.57
325 326 2.288457 TGGCTTCCTCGATCGATCAATC 60.288 50.000 24.40 9.52 0.00 2.67
341 342 6.771188 GATCAATCGATACTAACAAGGTGG 57.229 41.667 0.00 0.00 29.66 4.61
342 343 4.439057 TCAATCGATACTAACAAGGTGGC 58.561 43.478 0.00 0.00 0.00 5.01
343 344 4.161565 TCAATCGATACTAACAAGGTGGCT 59.838 41.667 0.00 0.00 0.00 4.75
344 345 4.755266 ATCGATACTAACAAGGTGGCTT 57.245 40.909 0.00 0.00 0.00 4.35
345 346 4.119442 TCGATACTAACAAGGTGGCTTC 57.881 45.455 0.00 0.00 0.00 3.86
346 347 3.118884 TCGATACTAACAAGGTGGCTTCC 60.119 47.826 0.00 0.00 0.00 3.46
347 348 3.118738 CGATACTAACAAGGTGGCTTCCT 60.119 47.826 0.00 0.00 39.84 3.36
348 349 2.861147 ACTAACAAGGTGGCTTCCTC 57.139 50.000 2.66 0.00 36.74 3.71
349 350 1.351350 ACTAACAAGGTGGCTTCCTCC 59.649 52.381 2.66 0.00 36.74 4.30
358 359 1.066143 GTGGCTTCCTCCGAGAATGAA 60.066 52.381 0.00 0.00 0.00 2.57
360 361 2.284190 GGCTTCCTCCGAGAATGAAAG 58.716 52.381 0.00 0.00 0.00 2.62
362 363 1.929836 CTTCCTCCGAGAATGAAAGCG 59.070 52.381 0.00 0.00 0.00 4.68
363 364 0.460284 TCCTCCGAGAATGAAAGCGC 60.460 55.000 0.00 0.00 0.00 5.92
385 386 4.464112 CTTTGGTTTTCCGAAACGAGATC 58.536 43.478 0.00 0.00 44.83 2.75
433 434 1.886886 AGTTGAACGGGCGTTATTGT 58.113 45.000 0.00 0.00 38.60 2.71
434 435 1.802365 AGTTGAACGGGCGTTATTGTC 59.198 47.619 0.00 0.00 38.60 3.18
435 436 1.135888 GTTGAACGGGCGTTATTGTCC 60.136 52.381 0.00 0.00 38.60 4.02
436 437 0.035036 TGAACGGGCGTTATTGTCCA 59.965 50.000 0.00 0.00 38.60 4.02
457 458 9.397280 TGTCCATTTTATGTTAATTATGTCCGA 57.603 29.630 0.00 0.00 0.00 4.55
472 473 9.927668 AATTATGTCCGAACTCAAATGAATTTT 57.072 25.926 0.00 0.00 0.00 1.82
474 475 6.142818 TGTCCGAACTCAAATGAATTTTGT 57.857 33.333 0.00 0.00 44.25 2.83
486 487 5.640218 ATGAATTTTGTCGTGTTTGCAAG 57.360 34.783 0.00 0.00 0.00 4.01
489 490 5.809562 TGAATTTTGTCGTGTTTGCAAGAAT 59.190 32.000 0.00 0.00 35.06 2.40
491 492 5.694674 TTTTGTCGTGTTTGCAAGAATTC 57.305 34.783 0.00 0.00 35.06 2.17
493 494 2.286713 TGTCGTGTTTGCAAGAATTCCG 60.287 45.455 0.65 0.00 35.06 4.30
509 510 2.816204 TCCGTCCGAATGTGTTTGTA 57.184 45.000 0.00 0.00 0.00 2.41
512 513 4.818642 TCCGTCCGAATGTGTTTGTATTA 58.181 39.130 0.00 0.00 0.00 0.98
513 514 5.421277 TCCGTCCGAATGTGTTTGTATTAT 58.579 37.500 0.00 0.00 0.00 1.28
515 516 5.292345 CCGTCCGAATGTGTTTGTATTATGA 59.708 40.000 0.00 0.00 0.00 2.15
516 517 6.410845 CGTCCGAATGTGTTTGTATTATGAG 58.589 40.000 0.00 0.00 0.00 2.90
519 520 5.006261 CCGAATGTGTTTGTATTATGAGCGA 59.994 40.000 0.00 0.00 0.00 4.93
521 522 7.125755 CGAATGTGTTTGTATTATGAGCGAAT 58.874 34.615 0.00 0.00 0.00 3.34
522 523 7.110628 CGAATGTGTTTGTATTATGAGCGAATG 59.889 37.037 0.00 0.00 0.00 2.67
527 528 8.995906 GTGTTTGTATTATGAGCGAATGTTTAC 58.004 33.333 0.00 0.00 0.00 2.01
529 530 6.519353 TGTATTATGAGCGAATGTTTACGG 57.481 37.500 0.00 0.00 0.00 4.02
540 541 1.705256 TGTTTACGGCTAGCGTTGAG 58.295 50.000 15.48 4.76 0.00 3.02
544 545 1.100510 TACGGCTAGCGTTGAGTGAT 58.899 50.000 15.48 0.00 0.00 3.06
545 546 0.458543 ACGGCTAGCGTTGAGTGATG 60.459 55.000 9.00 0.00 0.00 3.07
548 549 1.281899 GCTAGCGTTGAGTGATGGAC 58.718 55.000 0.00 0.00 0.00 4.02
558 559 3.423996 GAGTGATGGACTCTCGTTACC 57.576 52.381 0.00 0.00 46.85 2.85
559 560 2.753452 GAGTGATGGACTCTCGTTACCA 59.247 50.000 0.00 0.00 46.85 3.25
566 567 2.232941 GGACTCTCGTTACCATTGTCCA 59.767 50.000 0.00 0.00 41.29 4.02
567 568 3.251571 GACTCTCGTTACCATTGTCCAC 58.748 50.000 0.00 0.00 0.00 4.02
568 569 2.259618 CTCTCGTTACCATTGTCCACG 58.740 52.381 0.00 0.00 34.28 4.94
569 570 1.067425 TCTCGTTACCATTGTCCACGG 60.067 52.381 2.81 0.00 33.96 4.94
570 571 0.967662 TCGTTACCATTGTCCACGGA 59.032 50.000 2.81 0.00 33.96 4.69
571 572 1.073177 CGTTACCATTGTCCACGGAC 58.927 55.000 9.38 9.38 44.77 4.79
579 580 4.423764 GTCCACGGACACGACAAA 57.576 55.556 11.43 0.00 44.02 2.83
580 581 2.908817 GTCCACGGACACGACAAAT 58.091 52.632 11.43 0.00 44.02 2.32
581 582 2.068837 GTCCACGGACACGACAAATA 57.931 50.000 11.43 0.00 44.02 1.40
582 583 1.723003 GTCCACGGACACGACAAATAC 59.277 52.381 11.43 0.00 44.02 1.89
583 584 1.073177 CCACGGACACGACAAATACC 58.927 55.000 0.00 0.00 44.60 2.73
584 585 0.711670 CACGGACACGACAAATACCG 59.288 55.000 0.00 0.00 44.60 4.02
585 586 0.314935 ACGGACACGACAAATACCGT 59.685 50.000 0.00 0.00 46.69 4.83
595 596 6.219302 ACGACAAATACCGTGTCTTTTTAG 57.781 37.500 0.00 0.00 42.68 1.85
596 597 5.984926 ACGACAAATACCGTGTCTTTTTAGA 59.015 36.000 0.00 0.00 42.68 2.10
628 629 4.976116 TCGAAGATGACTGTATACAATGCG 59.024 41.667 7.06 0.00 0.00 4.73
629 630 4.976116 CGAAGATGACTGTATACAATGCGA 59.024 41.667 7.06 0.00 0.00 5.10
636 637 6.394809 TGACTGTATACAATGCGAGAAAGAA 58.605 36.000 7.06 0.00 0.00 2.52
641 642 6.649141 TGTATACAATGCGAGAAAGAAACACT 59.351 34.615 2.20 0.00 0.00 3.55
659 660 9.857656 AGAAACACTCATATATCAATTGATGGT 57.142 29.630 27.59 18.75 36.05 3.55
687 688 3.254903 ACCCAGAAATACGCTTTCCAAAC 59.745 43.478 7.28 0.00 0.00 2.93
699 700 3.304726 GCTTTCCAAACTGTCCTAGCAAC 60.305 47.826 0.00 0.00 0.00 4.17
843 888 3.565902 CCTCAGAAAAGAAACACACCTCC 59.434 47.826 0.00 0.00 0.00 4.30
844 889 3.202906 TCAGAAAAGAAACACACCTCCG 58.797 45.455 0.00 0.00 0.00 4.63
928 975 4.758251 CTCGCACCCCGCATCACA 62.758 66.667 0.00 0.00 42.60 3.58
973 1025 1.679153 CAAACCCCGCGGCTATAAATT 59.321 47.619 22.85 4.12 0.00 1.82
975 1027 0.536460 ACCCCGCGGCTATAAATTGG 60.536 55.000 22.85 14.97 0.00 3.16
996 1053 4.729918 CGCCCCAGAAAGCCTGCT 62.730 66.667 0.00 0.00 41.57 4.24
1003 1061 0.034767 CAGAAAGCCTGCTCCATCCA 60.035 55.000 0.00 0.00 35.89 3.41
1008 1066 3.080641 CCTGCTCCATCCACCACA 58.919 61.111 0.00 0.00 0.00 4.17
1011 1069 0.812811 CTGCTCCATCCACCACATCG 60.813 60.000 0.00 0.00 0.00 3.84
1012 1070 2.182842 GCTCCATCCACCACATCGC 61.183 63.158 0.00 0.00 0.00 4.58
1013 1071 1.524002 CTCCATCCACCACATCGCT 59.476 57.895 0.00 0.00 0.00 4.93
1015 1073 0.977627 TCCATCCACCACATCGCTCT 60.978 55.000 0.00 0.00 0.00 4.09
1016 1074 0.752658 CCATCCACCACATCGCTCTA 59.247 55.000 0.00 0.00 0.00 2.43
1036 1107 1.051812 CACCTCACCAAGACAGGTCT 58.948 55.000 0.00 0.00 40.77 3.85
1407 5622 3.368843 CCACCACCAGATTAGAGTGTCTG 60.369 52.174 0.00 0.00 41.13 3.51
1431 5646 3.434299 GGTTCGTGGTCGTTGATGTAATT 59.566 43.478 0.00 0.00 38.33 1.40
1557 5779 1.065358 CGTTCGATTGCGTTACCTGT 58.935 50.000 0.00 0.00 38.98 4.00
1558 5780 1.058695 CGTTCGATTGCGTTACCTGTC 59.941 52.381 0.00 0.00 38.98 3.51
1560 5782 3.504863 GTTCGATTGCGTTACCTGTCTA 58.495 45.455 0.00 0.00 38.98 2.59
1588 5889 1.920351 ACCCCAAATCCCTGTACGAAT 59.080 47.619 0.00 0.00 0.00 3.34
1625 5926 2.806244 CAAGTTCCAAATCCGTCGAGTT 59.194 45.455 0.00 0.00 0.00 3.01
1680 6015 1.517832 CAGGTACGAGCTCCCCAAG 59.482 63.158 8.47 0.00 0.00 3.61
1745 6096 1.308998 CAAGGCACCAGTTCTCGTTT 58.691 50.000 0.00 0.00 0.00 3.60
1787 6146 1.657751 GAACAGATTTGGGGCCGAGC 61.658 60.000 0.00 0.00 0.00 5.03
1831 6190 1.003718 CGGACAGGGGGTGAGAAAC 60.004 63.158 0.00 0.00 0.00 2.78
1979 6354 3.057456 ACGGTATGGTATCGATCTGCTTC 60.057 47.826 0.00 0.00 35.91 3.86
1990 6367 1.658095 GATCTGCTTCGCTGACTGTTC 59.342 52.381 0.00 0.00 39.15 3.18
2001 6382 5.357257 TCGCTGACTGTTCTTTTCTTACTT 58.643 37.500 0.00 0.00 0.00 2.24
2025 6408 5.791336 AATTACTCATGATCGCCTACTGA 57.209 39.130 0.00 0.00 0.00 3.41
2065 6452 5.674525 CACTAGGATGTGCTCTTCCAATAA 58.325 41.667 19.40 4.84 39.47 1.40
2079 6468 8.703336 GCTCTTCCAATAAAATCAAGTTTCAAC 58.297 33.333 0.00 0.00 0.00 3.18
2130 6519 1.212935 CCTCCTGGGGGTTGATAACAG 59.787 57.143 3.76 0.00 0.00 3.16
2131 6520 0.623723 TCCTGGGGGTTGATAACAGC 59.376 55.000 0.00 0.00 0.00 4.40
2132 6521 0.625849 CCTGGGGGTTGATAACAGCT 59.374 55.000 0.00 0.00 0.00 4.24
2133 6522 1.005924 CCTGGGGGTTGATAACAGCTT 59.994 52.381 0.00 0.00 0.00 3.74
2134 6523 2.557452 CCTGGGGGTTGATAACAGCTTT 60.557 50.000 0.00 0.00 0.00 3.51
2135 6524 2.493278 CTGGGGGTTGATAACAGCTTTG 59.507 50.000 0.00 0.00 0.00 2.77
2136 6525 2.158385 TGGGGGTTGATAACAGCTTTGT 60.158 45.455 0.00 0.00 0.00 2.83
2137 6526 2.231235 GGGGGTTGATAACAGCTTTGTG 59.769 50.000 0.00 0.00 0.00 3.33
2138 6527 2.231235 GGGGTTGATAACAGCTTTGTGG 59.769 50.000 0.00 0.00 0.00 4.17
2139 6528 3.153919 GGGTTGATAACAGCTTTGTGGA 58.846 45.455 0.00 0.00 0.00 4.02
2140 6529 3.572255 GGGTTGATAACAGCTTTGTGGAA 59.428 43.478 0.00 0.00 0.00 3.53
2141 6530 4.220602 GGGTTGATAACAGCTTTGTGGAAT 59.779 41.667 0.00 0.00 0.00 3.01
2142 6531 5.402398 GGTTGATAACAGCTTTGTGGAATC 58.598 41.667 0.00 0.00 0.00 2.52
2143 6532 5.402398 GTTGATAACAGCTTTGTGGAATCC 58.598 41.667 0.00 0.00 0.00 3.01
2144 6533 4.661222 TGATAACAGCTTTGTGGAATCCA 58.339 39.130 0.00 0.00 0.00 3.41
2494 6928 7.385205 AGTCTACATCTGTGTACATTTGTTCAC 59.615 37.037 12.01 12.01 43.66 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.238631 GCCAGATTCAAATGCATGTTTAATTTT 58.761 29.630 0.00 0.00 0.00 1.82
38 39 7.413219 CGCCAGATTCAAATGCATGTTTAATTT 60.413 33.333 0.00 0.00 0.00 1.82
39 40 6.036300 CGCCAGATTCAAATGCATGTTTAATT 59.964 34.615 0.00 0.00 0.00 1.40
40 41 5.521010 CGCCAGATTCAAATGCATGTTTAAT 59.479 36.000 0.00 0.00 0.00 1.40
41 42 4.863689 CGCCAGATTCAAATGCATGTTTAA 59.136 37.500 0.00 0.00 0.00 1.52
42 43 4.422840 CGCCAGATTCAAATGCATGTTTA 58.577 39.130 0.00 0.00 0.00 2.01
43 44 3.255725 CGCCAGATTCAAATGCATGTTT 58.744 40.909 0.00 0.00 0.00 2.83
44 45 2.883574 CGCCAGATTCAAATGCATGTT 58.116 42.857 0.00 0.00 0.00 2.71
45 46 1.470285 GCGCCAGATTCAAATGCATGT 60.470 47.619 0.00 0.00 0.00 3.21
46 47 1.205657 GCGCCAGATTCAAATGCATG 58.794 50.000 0.00 0.00 0.00 4.06
47 48 0.818938 TGCGCCAGATTCAAATGCAT 59.181 45.000 4.18 0.00 0.00 3.96
48 49 0.602060 TTGCGCCAGATTCAAATGCA 59.398 45.000 4.18 0.00 0.00 3.96
49 50 1.856597 GATTGCGCCAGATTCAAATGC 59.143 47.619 4.18 0.00 0.00 3.56
50 51 3.113322 CTGATTGCGCCAGATTCAAATG 58.887 45.455 4.18 0.00 33.65 2.32
51 52 2.480759 GCTGATTGCGCCAGATTCAAAT 60.481 45.455 15.20 0.74 33.65 2.32
52 53 1.135315 GCTGATTGCGCCAGATTCAAA 60.135 47.619 15.20 0.00 33.65 2.69
53 54 0.452987 GCTGATTGCGCCAGATTCAA 59.547 50.000 15.20 0.00 33.65 2.69
54 55 0.677414 TGCTGATTGCGCCAGATTCA 60.677 50.000 15.20 5.67 46.63 2.57
55 56 0.666913 ATGCTGATTGCGCCAGATTC 59.333 50.000 15.20 1.37 46.63 2.52
56 57 1.108776 AATGCTGATTGCGCCAGATT 58.891 45.000 15.20 9.22 46.63 2.40
57 58 0.384309 CAATGCTGATTGCGCCAGAT 59.616 50.000 15.20 2.13 46.63 2.90
58 59 0.677414 TCAATGCTGATTGCGCCAGA 60.677 50.000 15.20 0.00 46.63 3.86
59 60 0.171679 TTCAATGCTGATTGCGCCAG 59.828 50.000 4.18 6.33 46.63 4.85
60 61 0.109179 GTTCAATGCTGATTGCGCCA 60.109 50.000 4.18 0.00 46.63 5.69
61 62 0.171903 AGTTCAATGCTGATTGCGCC 59.828 50.000 4.18 0.00 46.63 6.53
62 63 1.265568 CAGTTCAATGCTGATTGCGC 58.734 50.000 0.00 0.00 46.63 6.09
63 64 1.265568 GCAGTTCAATGCTGATTGCG 58.734 50.000 0.00 0.00 46.63 4.85
64 65 1.990563 GTGCAGTTCAATGCTGATTGC 59.009 47.619 0.41 6.20 46.63 3.56
65 66 3.291809 TGTGCAGTTCAATGCTGATTG 57.708 42.857 0.41 0.00 46.63 2.67
66 67 4.530710 ATTGTGCAGTTCAATGCTGATT 57.469 36.364 0.41 0.00 46.63 2.57
67 68 4.530710 AATTGTGCAGTTCAATGCTGAT 57.469 36.364 2.13 0.00 46.63 2.90
68 69 4.052608 CAAATTGTGCAGTTCAATGCTGA 58.947 39.130 2.13 0.00 46.63 4.26
69 70 3.805422 ACAAATTGTGCAGTTCAATGCTG 59.195 39.130 0.00 5.83 46.63 4.41
70 71 4.062677 ACAAATTGTGCAGTTCAATGCT 57.937 36.364 0.00 0.00 46.63 3.79
71 72 4.270566 TCAACAAATTGTGCAGTTCAATGC 59.729 37.500 0.00 0.00 39.45 3.56
72 73 5.970140 TCAACAAATTGTGCAGTTCAATG 57.030 34.783 0.00 0.00 37.11 2.82
73 74 8.659925 TTTATCAACAAATTGTGCAGTTCAAT 57.340 26.923 0.00 0.00 37.11 2.57
74 75 8.659925 ATTTATCAACAAATTGTGCAGTTCAA 57.340 26.923 0.00 0.00 37.11 2.69
75 76 8.659925 AATTTATCAACAAATTGTGCAGTTCA 57.340 26.923 0.00 0.00 36.88 3.18
109 110 1.971695 CAAAAGTGGCGACTCCCCC 60.972 63.158 0.40 0.00 0.00 5.40
110 111 2.626780 GCAAAAGTGGCGACTCCCC 61.627 63.158 0.40 0.00 0.00 4.81
111 112 2.626780 GGCAAAAGTGGCGACTCCC 61.627 63.158 0.40 0.00 40.97 4.30
112 113 2.954611 GGCAAAAGTGGCGACTCC 59.045 61.111 0.40 0.00 40.97 3.85
135 136 3.905437 TTTACTCCGGCCGGCAACC 62.905 63.158 39.89 10.33 34.68 3.77
136 137 2.358984 TTTACTCCGGCCGGCAAC 60.359 61.111 39.89 11.20 34.68 4.17
137 138 2.046700 CTTTACTCCGGCCGGCAA 60.047 61.111 39.89 27.61 34.68 4.52
138 139 4.090588 CCTTTACTCCGGCCGGCA 62.091 66.667 39.89 25.76 34.68 5.69
139 140 4.091939 ACCTTTACTCCGGCCGGC 62.092 66.667 39.89 21.18 34.68 6.13
140 141 2.186125 GACCTTTACTCCGGCCGG 59.814 66.667 39.13 39.13 0.00 6.13
141 142 2.186125 GGACCTTTACTCCGGCCG 59.814 66.667 21.04 21.04 0.00 6.13
142 143 2.588439 GGGACCTTTACTCCGGCC 59.412 66.667 0.00 0.00 0.00 6.13
143 144 2.186125 CGGGACCTTTACTCCGGC 59.814 66.667 0.00 0.00 38.93 6.13
144 145 2.186125 GCGGGACCTTTACTCCGG 59.814 66.667 0.00 0.00 42.43 5.14
145 146 2.186125 GGCGGGACCTTTACTCCG 59.814 66.667 0.00 0.00 44.70 4.63
146 147 2.186125 CGGCGGGACCTTTACTCC 59.814 66.667 0.00 0.00 35.61 3.85
147 148 2.510918 GCGGCGGGACCTTTACTC 60.511 66.667 9.78 0.00 35.61 2.59
148 149 2.590114 AAGCGGCGGGACCTTTACT 61.590 57.895 9.78 0.00 35.61 2.24
149 150 2.046604 AAGCGGCGGGACCTTTAC 60.047 61.111 9.78 0.00 35.61 2.01
150 151 2.046700 CAAGCGGCGGGACCTTTA 60.047 61.111 9.78 0.00 35.61 1.85
160 161 1.303309 ACAAGAGATATGCAAGCGGC 58.697 50.000 0.00 0.00 45.13 6.53
161 162 2.032550 CCAACAAGAGATATGCAAGCGG 59.967 50.000 0.00 0.00 0.00 5.52
162 163 2.540361 GCCAACAAGAGATATGCAAGCG 60.540 50.000 0.00 0.00 0.00 4.68
163 164 2.223665 GGCCAACAAGAGATATGCAAGC 60.224 50.000 0.00 0.00 0.00 4.01
164 165 3.018856 TGGCCAACAAGAGATATGCAAG 58.981 45.455 0.61 0.00 0.00 4.01
165 166 2.754552 GTGGCCAACAAGAGATATGCAA 59.245 45.455 7.24 0.00 0.00 4.08
166 167 2.025981 AGTGGCCAACAAGAGATATGCA 60.026 45.455 7.24 0.00 0.00 3.96
167 168 2.615912 GAGTGGCCAACAAGAGATATGC 59.384 50.000 7.24 0.00 0.00 3.14
168 169 2.868583 CGAGTGGCCAACAAGAGATATG 59.131 50.000 7.24 0.00 0.00 1.78
169 170 2.743183 GCGAGTGGCCAACAAGAGATAT 60.743 50.000 7.24 0.00 34.80 1.63
170 171 1.405526 GCGAGTGGCCAACAAGAGATA 60.406 52.381 7.24 0.00 34.80 1.98
171 172 0.674895 GCGAGTGGCCAACAAGAGAT 60.675 55.000 7.24 0.00 34.80 2.75
172 173 1.301716 GCGAGTGGCCAACAAGAGA 60.302 57.895 7.24 0.00 34.80 3.10
173 174 3.257933 GCGAGTGGCCAACAAGAG 58.742 61.111 7.24 0.00 34.80 2.85
201 202 4.742201 CTGGTCACCGCCGGAGTG 62.742 72.222 11.71 16.69 37.06 3.51
203 204 4.436998 GACTGGTCACCGCCGGAG 62.437 72.222 11.71 0.41 38.27 4.63
210 211 4.083862 GGAGGCGGACTGGTCACC 62.084 72.222 0.00 0.00 0.00 4.02
211 212 4.436998 CGGAGGCGGACTGGTCAC 62.437 72.222 0.00 0.00 0.00 3.67
212 213 4.671590 TCGGAGGCGGACTGGTCA 62.672 66.667 0.00 0.00 0.00 4.02
213 214 3.827898 CTCGGAGGCGGACTGGTC 61.828 72.222 0.00 0.00 0.00 4.02
214 215 3.663815 ATCTCGGAGGCGGACTGGT 62.664 63.158 4.96 0.00 0.00 4.00
215 216 2.427245 AATCTCGGAGGCGGACTGG 61.427 63.158 4.96 0.00 0.00 4.00
216 217 1.227089 CAATCTCGGAGGCGGACTG 60.227 63.158 4.96 0.00 0.00 3.51
217 218 1.379977 TCAATCTCGGAGGCGGACT 60.380 57.895 4.96 0.00 0.00 3.85
218 219 1.066587 CTCAATCTCGGAGGCGGAC 59.933 63.158 4.96 0.00 0.00 4.79
219 220 2.127869 CCTCAATCTCGGAGGCGGA 61.128 63.158 4.96 0.00 44.95 5.54
220 221 2.419198 CCTCAATCTCGGAGGCGG 59.581 66.667 4.96 0.00 44.95 6.13
224 225 0.676736 GCTACCCCTCAATCTCGGAG 59.323 60.000 0.00 0.00 0.00 4.63
225 226 0.261991 AGCTACCCCTCAATCTCGGA 59.738 55.000 0.00 0.00 0.00 4.55
226 227 1.889829 CTAGCTACCCCTCAATCTCGG 59.110 57.143 0.00 0.00 0.00 4.63
227 228 1.889829 CCTAGCTACCCCTCAATCTCG 59.110 57.143 0.00 0.00 0.00 4.04
228 229 1.621317 GCCTAGCTACCCCTCAATCTC 59.379 57.143 0.00 0.00 0.00 2.75
229 230 1.723288 GCCTAGCTACCCCTCAATCT 58.277 55.000 0.00 0.00 0.00 2.40
230 231 0.687920 GGCCTAGCTACCCCTCAATC 59.312 60.000 0.00 0.00 0.00 2.67
231 232 0.030092 TGGCCTAGCTACCCCTCAAT 60.030 55.000 3.32 0.00 0.00 2.57
232 233 0.691078 CTGGCCTAGCTACCCCTCAA 60.691 60.000 3.32 0.00 0.00 3.02
233 234 1.075226 CTGGCCTAGCTACCCCTCA 60.075 63.158 3.32 0.00 0.00 3.86
234 235 1.075151 ACTGGCCTAGCTACCCCTC 60.075 63.158 3.32 0.00 0.00 4.30
235 236 1.383248 CACTGGCCTAGCTACCCCT 60.383 63.158 3.32 0.00 0.00 4.79
236 237 3.108288 GCACTGGCCTAGCTACCCC 62.108 68.421 3.32 0.00 0.00 4.95
237 238 2.034048 GAGCACTGGCCTAGCTACCC 62.034 65.000 15.44 0.00 42.56 3.69
238 239 1.443828 GAGCACTGGCCTAGCTACC 59.556 63.158 15.44 3.11 42.56 3.18
239 240 1.066587 CGAGCACTGGCCTAGCTAC 59.933 63.158 15.44 9.44 42.56 3.58
240 241 2.786495 GCGAGCACTGGCCTAGCTA 61.786 63.158 15.44 0.00 42.56 3.32
241 242 4.154347 GCGAGCACTGGCCTAGCT 62.154 66.667 15.40 15.40 42.56 3.32
262 263 1.153958 GATGAAACTGGCGCTTGGC 60.154 57.895 7.64 0.00 42.51 4.52
263 264 0.169672 CTGATGAAACTGGCGCTTGG 59.830 55.000 7.64 0.00 0.00 3.61
264 265 0.169672 CCTGATGAAACTGGCGCTTG 59.830 55.000 7.64 2.57 0.00 4.01
265 266 1.589716 GCCTGATGAAACTGGCGCTT 61.590 55.000 7.64 0.00 42.86 4.68
266 267 2.042831 GCCTGATGAAACTGGCGCT 61.043 57.895 7.64 0.00 42.86 5.92
267 268 2.486966 GCCTGATGAAACTGGCGC 59.513 61.111 0.00 0.00 42.86 6.53
269 270 1.098050 ATTCGCCTGATGAAACTGGC 58.902 50.000 0.00 0.00 46.47 4.85
270 271 2.098117 GGAATTCGCCTGATGAAACTGG 59.902 50.000 0.00 0.00 0.00 4.00
271 272 2.098117 GGGAATTCGCCTGATGAAACTG 59.902 50.000 11.31 0.00 0.00 3.16
272 273 2.025887 AGGGAATTCGCCTGATGAAACT 60.026 45.455 18.08 0.00 0.00 2.66
273 274 2.369394 AGGGAATTCGCCTGATGAAAC 58.631 47.619 18.08 0.00 0.00 2.78
274 275 2.754552 CAAGGGAATTCGCCTGATGAAA 59.245 45.455 18.08 0.00 0.00 2.69
275 276 2.290896 ACAAGGGAATTCGCCTGATGAA 60.291 45.455 23.53 0.00 0.00 2.57
276 277 1.281867 ACAAGGGAATTCGCCTGATGA 59.718 47.619 23.53 0.00 0.00 2.92
277 278 1.672881 GACAAGGGAATTCGCCTGATG 59.327 52.381 23.53 16.35 0.00 3.07
278 279 1.561542 AGACAAGGGAATTCGCCTGAT 59.438 47.619 23.53 11.40 0.00 2.90
279 280 0.984230 AGACAAGGGAATTCGCCTGA 59.016 50.000 23.53 0.00 0.00 3.86
280 281 2.691409 TAGACAAGGGAATTCGCCTG 57.309 50.000 18.08 17.54 0.00 4.85
281 282 3.713826 TTTAGACAAGGGAATTCGCCT 57.286 42.857 18.08 13.25 0.00 5.52
282 283 3.756963 ACTTTTAGACAAGGGAATTCGCC 59.243 43.478 18.08 11.25 0.00 5.54
283 284 4.379499 CCACTTTTAGACAAGGGAATTCGC 60.379 45.833 14.34 14.34 27.07 4.70
284 285 4.379499 GCCACTTTTAGACAAGGGAATTCG 60.379 45.833 0.00 0.00 27.07 3.34
285 286 4.767409 AGCCACTTTTAGACAAGGGAATTC 59.233 41.667 0.00 0.00 27.07 2.17
286 287 4.740902 AGCCACTTTTAGACAAGGGAATT 58.259 39.130 0.00 0.00 27.07 2.17
287 288 4.388577 AGCCACTTTTAGACAAGGGAAT 57.611 40.909 0.00 0.00 27.07 3.01
288 289 3.876309 AGCCACTTTTAGACAAGGGAA 57.124 42.857 0.00 0.00 27.07 3.97
289 290 3.497942 GGAAGCCACTTTTAGACAAGGGA 60.498 47.826 0.00 0.00 27.07 4.20
290 291 2.820197 GGAAGCCACTTTTAGACAAGGG 59.180 50.000 0.00 0.00 0.00 3.95
291 292 3.753797 GAGGAAGCCACTTTTAGACAAGG 59.246 47.826 0.00 0.00 0.00 3.61
292 293 3.433615 CGAGGAAGCCACTTTTAGACAAG 59.566 47.826 0.00 0.00 0.00 3.16
293 294 3.070446 TCGAGGAAGCCACTTTTAGACAA 59.930 43.478 0.00 0.00 0.00 3.18
294 295 2.631062 TCGAGGAAGCCACTTTTAGACA 59.369 45.455 0.00 0.00 0.00 3.41
295 296 3.314541 TCGAGGAAGCCACTTTTAGAC 57.685 47.619 0.00 0.00 0.00 2.59
296 297 3.428999 CGATCGAGGAAGCCACTTTTAGA 60.429 47.826 10.26 0.00 0.00 2.10
297 298 2.860735 CGATCGAGGAAGCCACTTTTAG 59.139 50.000 10.26 0.00 0.00 1.85
298 299 2.494471 TCGATCGAGGAAGCCACTTTTA 59.506 45.455 15.15 0.00 0.00 1.52
299 300 1.275291 TCGATCGAGGAAGCCACTTTT 59.725 47.619 15.15 0.00 0.00 2.27
300 301 0.895530 TCGATCGAGGAAGCCACTTT 59.104 50.000 15.15 0.00 0.00 2.66
301 302 1.067821 GATCGATCGAGGAAGCCACTT 59.932 52.381 23.84 1.76 0.00 3.16
302 303 0.671251 GATCGATCGAGGAAGCCACT 59.329 55.000 23.84 2.57 0.00 4.00
303 304 0.385751 TGATCGATCGAGGAAGCCAC 59.614 55.000 23.84 7.48 0.00 5.01
304 305 1.111277 TTGATCGATCGAGGAAGCCA 58.889 50.000 23.84 10.71 0.00 4.75
305 306 2.333014 GATTGATCGATCGAGGAAGCC 58.667 52.381 23.84 10.18 0.00 4.35
318 319 5.177696 GCCACCTTGTTAGTATCGATTGATC 59.822 44.000 1.71 0.00 35.99 2.92
319 320 5.057149 GCCACCTTGTTAGTATCGATTGAT 58.943 41.667 1.71 0.02 38.67 2.57
320 321 4.161565 AGCCACCTTGTTAGTATCGATTGA 59.838 41.667 1.71 0.00 0.00 2.57
321 322 4.442706 AGCCACCTTGTTAGTATCGATTG 58.557 43.478 1.71 0.00 0.00 2.67
322 323 4.755266 AGCCACCTTGTTAGTATCGATT 57.245 40.909 1.71 0.00 0.00 3.34
323 324 4.443034 GGAAGCCACCTTGTTAGTATCGAT 60.443 45.833 2.16 2.16 0.00 3.59
324 325 3.118884 GGAAGCCACCTTGTTAGTATCGA 60.119 47.826 0.00 0.00 0.00 3.59
325 326 3.118738 AGGAAGCCACCTTGTTAGTATCG 60.119 47.826 0.00 0.00 36.86 2.92
326 327 4.443621 GAGGAAGCCACCTTGTTAGTATC 58.556 47.826 0.81 0.00 40.73 2.24
327 328 3.200165 GGAGGAAGCCACCTTGTTAGTAT 59.800 47.826 0.81 0.00 40.73 2.12
328 329 2.570302 GGAGGAAGCCACCTTGTTAGTA 59.430 50.000 0.81 0.00 40.73 1.82
329 330 1.351350 GGAGGAAGCCACCTTGTTAGT 59.649 52.381 0.81 0.00 40.73 2.24
330 331 1.676014 CGGAGGAAGCCACCTTGTTAG 60.676 57.143 0.81 0.00 40.73 2.34
331 332 0.323629 CGGAGGAAGCCACCTTGTTA 59.676 55.000 0.81 0.00 40.73 2.41
332 333 1.073199 CGGAGGAAGCCACCTTGTT 59.927 57.895 0.81 0.00 40.73 2.83
333 334 1.831652 CTCGGAGGAAGCCACCTTGT 61.832 60.000 0.00 0.00 40.73 3.16
334 335 1.078848 CTCGGAGGAAGCCACCTTG 60.079 63.158 0.00 0.00 40.73 3.61
335 336 0.836400 TTCTCGGAGGAAGCCACCTT 60.836 55.000 4.96 0.00 40.73 3.50
336 337 0.618968 ATTCTCGGAGGAAGCCACCT 60.619 55.000 4.96 0.00 43.64 4.00
337 338 0.462759 CATTCTCGGAGGAAGCCACC 60.463 60.000 4.96 0.00 0.00 4.61
338 339 0.537188 TCATTCTCGGAGGAAGCCAC 59.463 55.000 4.96 0.00 0.00 5.01
339 340 1.275666 TTCATTCTCGGAGGAAGCCA 58.724 50.000 4.96 0.00 0.00 4.75
340 341 2.284190 CTTTCATTCTCGGAGGAAGCC 58.716 52.381 4.96 0.00 0.00 4.35
341 342 1.668237 GCTTTCATTCTCGGAGGAAGC 59.332 52.381 4.96 9.45 0.00 3.86
342 343 1.929836 CGCTTTCATTCTCGGAGGAAG 59.070 52.381 4.96 0.00 0.00 3.46
343 344 2.007049 GCGCTTTCATTCTCGGAGGAA 61.007 52.381 0.00 0.00 0.00 3.36
344 345 0.460284 GCGCTTTCATTCTCGGAGGA 60.460 55.000 0.00 0.00 0.00 3.71
345 346 0.460987 AGCGCTTTCATTCTCGGAGG 60.461 55.000 2.64 0.00 0.00 4.30
346 347 1.363744 AAGCGCTTTCATTCTCGGAG 58.636 50.000 18.98 0.00 0.00 4.63
347 348 1.464608 CAAAGCGCTTTCATTCTCGGA 59.535 47.619 31.63 0.00 0.00 4.55
348 349 1.466360 CCAAAGCGCTTTCATTCTCGG 60.466 52.381 31.63 22.89 0.00 4.63
349 350 1.197721 ACCAAAGCGCTTTCATTCTCG 59.802 47.619 31.63 18.24 0.00 4.04
358 359 0.741915 TTCGGAAAACCAAAGCGCTT 59.258 45.000 18.98 18.98 0.00 4.68
360 361 0.850217 GTTTCGGAAAACCAAAGCGC 59.150 50.000 4.46 0.00 39.10 5.92
362 363 2.032426 TCTCGTTTCGGAAAACCAAAGC 59.968 45.455 4.46 0.00 41.46 3.51
363 364 3.955771 TCTCGTTTCGGAAAACCAAAG 57.044 42.857 4.46 0.00 41.46 2.77
421 422 2.931512 AAAATGGACAATAACGCCCG 57.068 45.000 0.00 0.00 0.00 6.13
422 423 5.257082 ACATAAAATGGACAATAACGCCC 57.743 39.130 0.00 0.00 33.60 6.13
472 473 2.286713 CGGAATTCTTGCAAACACGACA 60.287 45.455 5.23 0.00 0.00 4.35
474 475 1.944024 ACGGAATTCTTGCAAACACGA 59.056 42.857 5.23 0.00 0.00 4.35
486 487 3.058501 ACAAACACATTCGGACGGAATTC 60.059 43.478 5.56 0.00 42.77 2.17
489 490 1.956297 ACAAACACATTCGGACGGAA 58.044 45.000 0.00 0.00 39.42 4.30
491 492 5.292345 TCATAATACAAACACATTCGGACGG 59.708 40.000 0.00 0.00 0.00 4.79
493 494 6.192360 GCTCATAATACAAACACATTCGGAC 58.808 40.000 0.00 0.00 0.00 4.79
509 510 4.127171 AGCCGTAAACATTCGCTCATAAT 58.873 39.130 0.00 0.00 0.00 1.28
512 513 2.024176 AGCCGTAAACATTCGCTCAT 57.976 45.000 0.00 0.00 0.00 2.90
513 514 2.536365 CTAGCCGTAAACATTCGCTCA 58.464 47.619 0.00 0.00 0.00 4.26
515 516 1.287425 GCTAGCCGTAAACATTCGCT 58.713 50.000 2.29 0.00 0.00 4.93
516 517 0.043310 CGCTAGCCGTAAACATTCGC 60.043 55.000 9.66 0.00 0.00 4.70
527 528 1.148157 CCATCACTCAACGCTAGCCG 61.148 60.000 9.66 7.08 44.21 5.52
529 530 1.134965 AGTCCATCACTCAACGCTAGC 60.135 52.381 4.06 4.06 0.00 3.42
540 541 3.865745 CAATGGTAACGAGAGTCCATCAC 59.134 47.826 0.00 0.00 44.99 3.06
548 549 2.259618 CGTGGACAATGGTAACGAGAG 58.740 52.381 2.43 0.00 38.68 3.20
551 552 0.967662 TCCGTGGACAATGGTAACGA 59.032 50.000 9.05 0.00 38.68 3.85
552 553 1.073177 GTCCGTGGACAATGGTAACG 58.927 55.000 14.10 1.71 44.02 3.18
566 567 0.314935 ACGGTATTTGTCGTGTCCGT 59.685 50.000 0.00 0.00 44.87 4.69
567 568 3.111536 ACGGTATTTGTCGTGTCCG 57.888 52.632 0.00 0.00 42.94 4.79
572 573 5.984926 TCTAAAAAGACACGGTATTTGTCGT 59.015 36.000 0.00 0.00 46.73 4.34
573 574 6.400727 CCTCTAAAAAGACACGGTATTTGTCG 60.401 42.308 0.00 0.00 46.73 4.35
574 575 6.647895 TCCTCTAAAAAGACACGGTATTTGTC 59.352 38.462 0.00 0.00 43.24 3.18
575 576 6.527423 TCCTCTAAAAAGACACGGTATTTGT 58.473 36.000 0.00 0.00 27.18 2.83
576 577 7.611213 ATCCTCTAAAAAGACACGGTATTTG 57.389 36.000 0.00 0.00 27.18 2.32
577 578 7.494952 GCTATCCTCTAAAAAGACACGGTATTT 59.505 37.037 0.00 0.00 0.00 1.40
578 579 6.985059 GCTATCCTCTAAAAAGACACGGTATT 59.015 38.462 0.00 0.00 0.00 1.89
579 580 6.514063 GCTATCCTCTAAAAAGACACGGTAT 58.486 40.000 0.00 0.00 0.00 2.73
580 581 5.449588 CGCTATCCTCTAAAAAGACACGGTA 60.450 44.000 0.00 0.00 0.00 4.02
581 582 4.677250 CGCTATCCTCTAAAAAGACACGGT 60.677 45.833 0.00 0.00 0.00 4.83
582 583 3.797256 CGCTATCCTCTAAAAAGACACGG 59.203 47.826 0.00 0.00 0.00 4.94
583 584 4.421948 ACGCTATCCTCTAAAAAGACACG 58.578 43.478 0.00 0.00 0.00 4.49
584 585 4.499758 CGACGCTATCCTCTAAAAAGACAC 59.500 45.833 0.00 0.00 0.00 3.67
585 586 4.397103 TCGACGCTATCCTCTAAAAAGACA 59.603 41.667 0.00 0.00 0.00 3.41
586 587 4.918037 TCGACGCTATCCTCTAAAAAGAC 58.082 43.478 0.00 0.00 0.00 3.01
587 588 5.356190 TCTTCGACGCTATCCTCTAAAAAGA 59.644 40.000 0.00 0.00 0.00 2.52
588 589 5.579718 TCTTCGACGCTATCCTCTAAAAAG 58.420 41.667 0.00 0.00 0.00 2.27
589 590 5.571784 TCTTCGACGCTATCCTCTAAAAA 57.428 39.130 0.00 0.00 0.00 1.94
590 591 5.298527 TCATCTTCGACGCTATCCTCTAAAA 59.701 40.000 0.00 0.00 0.00 1.52
591 592 4.820173 TCATCTTCGACGCTATCCTCTAAA 59.180 41.667 0.00 0.00 0.00 1.85
592 593 4.213694 GTCATCTTCGACGCTATCCTCTAA 59.786 45.833 0.00 0.00 0.00 2.10
593 594 3.747010 GTCATCTTCGACGCTATCCTCTA 59.253 47.826 0.00 0.00 0.00 2.43
594 595 2.550606 GTCATCTTCGACGCTATCCTCT 59.449 50.000 0.00 0.00 0.00 3.69
595 596 2.550606 AGTCATCTTCGACGCTATCCTC 59.449 50.000 0.00 0.00 40.98 3.71
596 597 2.292016 CAGTCATCTTCGACGCTATCCT 59.708 50.000 0.00 0.00 40.98 3.24
636 637 8.219868 TCCACCATCAATTGATATATGAGTGTT 58.780 33.333 20.32 0.00 32.63 3.32
641 642 8.859090 GGTTTTCCACCATCAATTGATATATGA 58.141 33.333 20.32 12.01 46.42 2.15
657 658 2.094906 GCGTATTTCTGGGTTTTCCACC 60.095 50.000 0.00 0.00 46.46 4.61
659 660 3.149005 AGCGTATTTCTGGGTTTTCCA 57.851 42.857 0.00 0.00 44.79 3.53
667 668 4.023193 ACAGTTTGGAAAGCGTATTTCTGG 60.023 41.667 12.82 2.99 29.71 3.86
668 669 5.108385 ACAGTTTGGAAAGCGTATTTCTG 57.892 39.130 12.82 7.25 29.71 3.02
677 678 2.504367 TGCTAGGACAGTTTGGAAAGC 58.496 47.619 0.00 0.00 0.00 3.51
687 688 0.610174 TCAGGCTGTTGCTAGGACAG 59.390 55.000 15.27 8.70 45.64 3.51
699 700 1.079503 GAAGGCGTAAACTCAGGCTG 58.920 55.000 8.58 8.58 40.74 4.85
879 924 1.903890 GATCGATGGAGGGGAGCGA 60.904 63.158 0.54 0.00 35.43 4.93
988 1040 2.233566 TGGTGGATGGAGCAGGCTT 61.234 57.895 0.00 0.00 0.00 4.35
989 1041 2.611800 TGGTGGATGGAGCAGGCT 60.612 61.111 0.00 0.00 0.00 4.58
993 1050 1.221566 CGATGTGGTGGATGGAGCA 59.778 57.895 0.00 0.00 0.00 4.26
994 1051 2.182842 GCGATGTGGTGGATGGAGC 61.183 63.158 0.00 0.00 0.00 4.70
996 1053 0.977627 AGAGCGATGTGGTGGATGGA 60.978 55.000 0.00 0.00 0.00 3.41
1003 1061 0.818296 GAGGTGTAGAGCGATGTGGT 59.182 55.000 0.00 0.00 0.00 4.16
1008 1066 1.478510 CTTGGTGAGGTGTAGAGCGAT 59.521 52.381 0.00 0.00 0.00 4.58
1011 1069 1.618837 TGTCTTGGTGAGGTGTAGAGC 59.381 52.381 0.00 0.00 0.00 4.09
1012 1070 2.232452 CCTGTCTTGGTGAGGTGTAGAG 59.768 54.545 0.00 0.00 0.00 2.43
1013 1071 2.248248 CCTGTCTTGGTGAGGTGTAGA 58.752 52.381 0.00 0.00 0.00 2.59
1015 1073 1.968493 GACCTGTCTTGGTGAGGTGTA 59.032 52.381 0.00 0.00 40.33 2.90
1016 1074 0.759346 GACCTGTCTTGGTGAGGTGT 59.241 55.000 0.00 0.00 40.33 4.16
1036 1107 3.165087 TCTTTTCTCTCCGGTGAGGTA 57.835 47.619 28.36 16.64 41.99 3.08
1407 5622 1.004200 ATCAACGACCACGAACCCC 60.004 57.895 0.00 0.00 42.66 4.95
1557 5779 3.720002 GGGATTTGGGGTAGAATGGTAGA 59.280 47.826 0.00 0.00 0.00 2.59
1558 5780 3.722101 AGGGATTTGGGGTAGAATGGTAG 59.278 47.826 0.00 0.00 0.00 3.18
1560 5782 2.244769 CAGGGATTTGGGGTAGAATGGT 59.755 50.000 0.00 0.00 0.00 3.55
1588 5889 6.639563 TGGAACTTGAATAAGATCGATGTGA 58.360 36.000 0.54 0.00 36.78 3.58
1625 5926 4.109766 CAATGTCGACGCCTGAAGTTATA 58.890 43.478 11.62 0.00 0.00 0.98
1680 6015 0.313672 TGCTGAACGGGAACAAATGC 59.686 50.000 0.00 0.00 0.00 3.56
1745 6096 4.756642 CCAGAAATAGAAGGCATGCGAATA 59.243 41.667 12.44 2.29 0.00 1.75
1831 6190 1.466866 CCAGCAGCACGATGACAAATG 60.467 52.381 0.00 0.00 30.38 2.32
1912 6271 4.416738 GGAGGCAGAGGTGGGCAC 62.417 72.222 0.00 0.00 0.00 5.01
1913 6272 4.980592 TGGAGGCAGAGGTGGGCA 62.981 66.667 0.00 0.00 0.00 5.36
1914 6273 3.650950 TTGGAGGCAGAGGTGGGC 61.651 66.667 0.00 0.00 0.00 5.36
1915 6274 2.352805 GTTGGAGGCAGAGGTGGG 59.647 66.667 0.00 0.00 0.00 4.61
1916 6275 2.227036 AGGTTGGAGGCAGAGGTGG 61.227 63.158 0.00 0.00 0.00 4.61
1979 6354 5.659048 AAGTAAGAAAAGAACAGTCAGCG 57.341 39.130 0.00 0.00 0.00 5.18
2001 6382 7.284919 TCAGTAGGCGATCATGAGTAATTTA 57.715 36.000 0.09 0.00 0.00 1.40
2017 6398 0.107654 AAGCCACGGAATCAGTAGGC 60.108 55.000 14.95 14.95 42.31 3.93
2025 6408 1.003112 TGCGGTTAAGCCACGGAAT 60.003 52.632 0.00 0.00 36.97 3.01
2044 6431 7.500227 TGATTTTATTGGAAGAGCACATCCTAG 59.500 37.037 6.95 0.00 35.25 3.02
2065 6452 8.025445 GCACATATCTGAGTTGAAACTTGATTT 58.975 33.333 13.82 7.24 39.88 2.17
2079 6468 2.563261 ATGGGCAGCACATATCTGAG 57.437 50.000 8.93 0.00 33.54 3.35
2110 6499 1.212935 CTGTTATCAACCCCCAGGAGG 59.787 57.143 0.00 0.00 36.73 4.30
2130 6519 2.028748 ACTGCAATGGATTCCACAAAGC 60.029 45.455 7.76 10.12 35.80 3.51
2131 6520 3.947910 ACTGCAATGGATTCCACAAAG 57.052 42.857 7.76 6.29 35.80 2.77
2132 6521 4.220382 CCTAACTGCAATGGATTCCACAAA 59.780 41.667 7.76 0.00 35.80 2.83
2133 6522 3.763360 CCTAACTGCAATGGATTCCACAA 59.237 43.478 7.76 0.00 35.80 3.33
2134 6523 3.010027 TCCTAACTGCAATGGATTCCACA 59.990 43.478 7.76 0.72 35.80 4.17
2135 6524 3.378427 GTCCTAACTGCAATGGATTCCAC 59.622 47.826 7.76 0.00 35.80 4.02
2136 6525 3.266772 AGTCCTAACTGCAATGGATTCCA 59.733 43.478 8.08 8.08 33.88 3.53
2137 6526 3.879892 GAGTCCTAACTGCAATGGATTCC 59.120 47.826 0.00 0.00 35.28 3.01
2138 6527 3.879892 GGAGTCCTAACTGCAATGGATTC 59.120 47.826 0.41 9.43 42.95 2.52
2139 6528 3.525199 AGGAGTCCTAACTGCAATGGATT 59.475 43.478 10.94 0.00 45.64 3.01
2140 6529 3.118112 CAGGAGTCCTAACTGCAATGGAT 60.118 47.826 12.53 0.00 45.64 3.41
2141 6530 2.237143 CAGGAGTCCTAACTGCAATGGA 59.763 50.000 12.53 0.00 45.64 3.41
2142 6531 2.636830 CAGGAGTCCTAACTGCAATGG 58.363 52.381 12.53 0.00 45.64 3.16
2185 6581 7.173562 CCCATCACAAATTCACAATTCAAATGT 59.826 33.333 0.00 0.00 0.00 2.71
2334 6764 7.510685 ACCATGAATCCTAGCTACTAATCTGAA 59.489 37.037 0.00 0.00 0.00 3.02
2494 6928 7.162082 AGGTAAACAACTGAGATTTACTCCAG 58.838 38.462 13.88 0.00 44.34 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.