Multiple sequence alignment - TraesCS5D01G353700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G353700 chr5D 100.000 6448 0 0 1 6448 436186609 436193056 0.000000e+00 11908.0
1 TraesCS5D01G353700 chr5D 88.539 349 36 3 1 349 253390526 253390182 2.780000e-113 420.0
2 TraesCS5D01G353700 chr5D 86.592 358 35 8 1 349 445208417 445208770 3.650000e-102 383.0
3 TraesCS5D01G353700 chr5D 86.339 366 29 3 1 345 510972995 510972630 4.720000e-101 379.0
4 TraesCS5D01G353700 chr5D 79.182 269 51 3 3227 3494 505116148 505116412 1.430000e-41 182.0
5 TraesCS5D01G353700 chr5A 96.868 4023 94 16 770 4781 550641824 550645825 0.000000e+00 6702.0
6 TraesCS5D01G353700 chr5A 97.125 974 26 2 4886 5858 550645821 550646793 0.000000e+00 1642.0
7 TraesCS5D01G353700 chr5A 94.960 377 10 5 5844 6214 550646814 550647187 3.350000e-162 582.0
8 TraesCS5D01G353700 chr5A 84.112 428 62 5 348 771 550637878 550638303 6.020000e-110 409.0
9 TraesCS5D01G353700 chr5A 92.366 131 9 1 6317 6447 550647197 550647326 1.100000e-42 185.0
10 TraesCS5D01G353700 chr5A 75.978 179 40 3 3313 3490 565629973 565630149 8.900000e-14 89.8
11 TraesCS5D01G353700 chr5B 97.144 2276 55 6 2510 4781 530230957 530233226 0.000000e+00 3834.0
12 TraesCS5D01G353700 chr5B 94.940 2154 79 16 346 2476 530228811 530230957 0.000000e+00 3347.0
13 TraesCS5D01G353700 chr5B 91.090 1257 63 24 4886 6109 530233222 530234462 0.000000e+00 1655.0
14 TraesCS5D01G353700 chr5B 89.065 631 52 11 346 973 530155554 530156170 0.000000e+00 767.0
15 TraesCS5D01G353700 chr5B 89.150 341 34 2 6108 6447 530234803 530235141 7.730000e-114 422.0
16 TraesCS5D01G353700 chr5B 84.302 344 43 9 6 346 56957162 56957497 6.230000e-85 326.0
17 TraesCS5D01G353700 chr5B 89.238 223 24 0 6225 6447 530235246 530235468 4.920000e-71 279.0
18 TraesCS5D01G353700 chr5B 100.000 29 0 0 1958 1986 31701003 31701031 3.000000e-03 54.7
19 TraesCS5D01G353700 chr3D 87.606 355 32 6 1 346 458309726 458310077 1.010000e-107 401.0
20 TraesCS5D01G353700 chr3D 91.635 263 20 2 3 264 610209760 610209499 4.750000e-96 363.0
21 TraesCS5D01G353700 chr7D 86.761 355 28 9 1 346 234131572 234131228 1.700000e-100 377.0
22 TraesCS5D01G353700 chr7D 78.598 542 94 14 4194 4719 264743985 264744520 8.010000e-89 339.0
23 TraesCS5D01G353700 chr2D 86.150 361 37 7 1 349 569260825 569261184 1.700000e-100 377.0
24 TraesCS5D01G353700 chr2D 95.775 71 3 0 4817 4887 383306432 383306502 1.470000e-21 115.0
25 TraesCS5D01G353700 chr7B 78.967 542 92 15 4194 4719 245063289 245063824 3.700000e-92 350.0
26 TraesCS5D01G353700 chr1D 85.143 350 38 4 1 346 42980294 42979955 4.790000e-91 346.0
27 TraesCS5D01G353700 chr1D 79.545 132 15 9 1939 2060 277135650 277135521 4.140000e-12 84.2
28 TraesCS5D01G353700 chrUn 84.807 362 34 4 6 346 213177899 213178260 1.720000e-90 344.0
29 TraesCS5D01G353700 chrUn 84.807 362 33 5 6 346 396111728 396111368 1.720000e-90 344.0
30 TraesCS5D01G353700 chrUn 84.469 367 35 7 1 346 394837302 394837667 6.190000e-90 342.0
31 TraesCS5D01G353700 chrUn 85.965 57 6 2 4843 4899 92888462 92888408 6.980000e-05 60.2
32 TraesCS5D01G353700 chr1A 84.469 367 35 7 1 346 6814872 6814507 6.190000e-90 342.0
33 TraesCS5D01G353700 chr1A 84.469 367 35 7 1 346 6833643 6833278 6.190000e-90 342.0
34 TraesCS5D01G353700 chr1A 84.530 362 35 6 6 346 6848422 6848061 8.010000e-89 339.0
35 TraesCS5D01G353700 chr6A 84.980 253 28 5 4248 4492 11329718 11329468 1.390000e-61 248.0
36 TraesCS5D01G353700 chr4A 83.636 220 25 6 4281 4492 634348485 634348269 5.100000e-46 196.0
37 TraesCS5D01G353700 chr3B 79.646 113 11 9 1958 2060 3695097 3694987 3.230000e-08 71.3
38 TraesCS5D01G353700 chr1B 77.876 113 13 8 1958 2060 121033606 121033716 6.980000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G353700 chr5D 436186609 436193056 6447 False 11908.0 11908 100.0000 1 6448 1 chr5D.!!$F1 6447
1 TraesCS5D01G353700 chr5A 550637878 550647326 9448 False 1904.0 6702 93.0862 348 6447 5 chr5A.!!$F2 6099
2 TraesCS5D01G353700 chr5B 530228811 530235468 6657 False 1907.4 3834 92.3124 346 6447 5 chr5B.!!$F4 6101
3 TraesCS5D01G353700 chr5B 530155554 530156170 616 False 767.0 767 89.0650 346 973 1 chr5B.!!$F3 627
4 TraesCS5D01G353700 chr7D 264743985 264744520 535 False 339.0 339 78.5980 4194 4719 1 chr7D.!!$F1 525
5 TraesCS5D01G353700 chr7B 245063289 245063824 535 False 350.0 350 78.9670 4194 4719 1 chr7B.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.037326 TTGATGCGTGAGGTCCACTC 60.037 55.000 0.00 0.0 46.78 3.51 F
474 484 0.040514 CATTTGTGTCGCCGCTTTCA 60.041 50.000 0.00 0.0 0.00 2.69 F
479 489 0.452784 GTGTCGCCGCTTTCATTCAC 60.453 55.000 0.00 0.0 0.00 3.18 F
567 581 1.334243 CGTTATCAGTCGAGAGTCCCC 59.666 57.143 0.00 0.0 0.00 4.81 F
1872 5417 1.421268 TCCTGCAGATTCCAGTGTTGT 59.579 47.619 17.39 0.0 0.00 3.32 F
3335 6892 0.607762 TGTTGCGCTGGCCTTCATTA 60.608 50.000 9.73 0.0 38.85 1.90 F
4791 8364 0.174845 TCATCTTAGGGCGTGTTCGG 59.825 55.000 0.00 0.0 37.56 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 4826 1.087501 CTCTTAGCCCTGCGTTTTCC 58.912 55.000 0.0 0.0 0.0 3.13 R
1631 5176 1.187087 GAACCCCACAGATCTCTCGT 58.813 55.000 0.0 0.0 0.0 4.18 R
2464 6019 3.056952 CATGAGTGCTGCGGTAAATTC 57.943 47.619 0.0 0.0 0.0 2.17 R
2547 6102 3.372206 GCCATGACTTGACTGATACACAC 59.628 47.826 0.0 0.0 0.0 3.82 R
3429 6986 0.663153 AACTTCTTCCACAGCAACGC 59.337 50.000 0.0 0.0 0.0 4.84 R
4806 8379 0.035630 AGCCAGCTTCCATCACAGAC 60.036 55.000 0.0 0.0 0.0 3.51 R
6271 10265 0.035317 TCGACTGTTTGGCATGAGCT 59.965 50.000 0.0 0.0 41.7 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 7.475771 TTTTGTGTGGTAGAAAATTTGATGC 57.524 32.000 0.00 0.00 0.00 3.91
74 75 4.793071 TGTGTGGTAGAAAATTTGATGCG 58.207 39.130 0.00 0.00 0.00 4.73
75 76 4.277174 TGTGTGGTAGAAAATTTGATGCGT 59.723 37.500 0.00 0.00 0.00 5.24
76 77 4.616802 GTGTGGTAGAAAATTTGATGCGTG 59.383 41.667 0.00 0.00 0.00 5.34
77 78 4.517075 TGTGGTAGAAAATTTGATGCGTGA 59.483 37.500 0.00 0.00 0.00 4.35
78 79 5.088739 GTGGTAGAAAATTTGATGCGTGAG 58.911 41.667 0.00 0.00 0.00 3.51
79 80 4.155826 TGGTAGAAAATTTGATGCGTGAGG 59.844 41.667 0.00 0.00 0.00 3.86
80 81 4.156008 GGTAGAAAATTTGATGCGTGAGGT 59.844 41.667 0.00 0.00 0.00 3.85
81 82 4.425577 AGAAAATTTGATGCGTGAGGTC 57.574 40.909 0.00 0.00 0.00 3.85
82 83 3.191371 AGAAAATTTGATGCGTGAGGTCC 59.809 43.478 0.00 0.00 0.00 4.46
83 84 2.198827 AATTTGATGCGTGAGGTCCA 57.801 45.000 0.00 0.00 0.00 4.02
84 85 1.453155 ATTTGATGCGTGAGGTCCAC 58.547 50.000 0.00 0.00 42.30 4.02
85 86 0.396435 TTTGATGCGTGAGGTCCACT 59.604 50.000 0.00 0.00 43.53 4.00
86 87 0.037326 TTGATGCGTGAGGTCCACTC 60.037 55.000 0.00 0.00 46.78 3.51
87 88 1.153549 GATGCGTGAGGTCCACTCC 60.154 63.158 0.00 0.00 46.01 3.85
88 89 1.888436 GATGCGTGAGGTCCACTCCA 61.888 60.000 0.00 0.00 46.01 3.86
89 90 1.480212 ATGCGTGAGGTCCACTCCAA 61.480 55.000 0.00 0.00 46.01 3.53
90 91 1.296715 GCGTGAGGTCCACTCCAAT 59.703 57.895 0.00 0.00 46.01 3.16
91 92 0.321653 GCGTGAGGTCCACTCCAATT 60.322 55.000 0.00 0.00 46.01 2.32
92 93 1.882352 GCGTGAGGTCCACTCCAATTT 60.882 52.381 0.00 0.00 46.01 1.82
93 94 2.504367 CGTGAGGTCCACTCCAATTTT 58.496 47.619 0.00 0.00 46.01 1.82
94 95 2.484264 CGTGAGGTCCACTCCAATTTTC 59.516 50.000 0.00 0.00 46.01 2.29
95 96 3.486383 GTGAGGTCCACTCCAATTTTCA 58.514 45.455 0.00 0.00 46.01 2.69
96 97 3.888930 GTGAGGTCCACTCCAATTTTCAA 59.111 43.478 0.00 0.00 46.01 2.69
97 98 4.340950 GTGAGGTCCACTCCAATTTTCAAA 59.659 41.667 0.00 0.00 46.01 2.69
98 99 4.340950 TGAGGTCCACTCCAATTTTCAAAC 59.659 41.667 0.00 0.00 46.01 2.93
99 100 3.641436 AGGTCCACTCCAATTTTCAAACC 59.359 43.478 0.00 0.00 0.00 3.27
100 101 3.386402 GGTCCACTCCAATTTTCAAACCA 59.614 43.478 0.00 0.00 0.00 3.67
101 102 4.040339 GGTCCACTCCAATTTTCAAACCAT 59.960 41.667 0.00 0.00 0.00 3.55
102 103 5.454613 GGTCCACTCCAATTTTCAAACCATT 60.455 40.000 0.00 0.00 0.00 3.16
103 104 6.054941 GTCCACTCCAATTTTCAAACCATTT 58.945 36.000 0.00 0.00 0.00 2.32
104 105 7.213678 GTCCACTCCAATTTTCAAACCATTTA 58.786 34.615 0.00 0.00 0.00 1.40
105 106 7.384932 GTCCACTCCAATTTTCAAACCATTTAG 59.615 37.037 0.00 0.00 0.00 1.85
106 107 7.288852 TCCACTCCAATTTTCAAACCATTTAGA 59.711 33.333 0.00 0.00 0.00 2.10
107 108 8.096414 CCACTCCAATTTTCAAACCATTTAGAT 58.904 33.333 0.00 0.00 0.00 1.98
116 117 9.973661 TTTTCAAACCATTTAGATATCTGAGGA 57.026 29.630 15.79 0.00 0.00 3.71
117 118 9.618890 TTTCAAACCATTTAGATATCTGAGGAG 57.381 33.333 15.79 4.18 0.00 3.69
118 119 7.220030 TCAAACCATTTAGATATCTGAGGAGC 58.780 38.462 15.79 0.00 0.00 4.70
119 120 7.071698 TCAAACCATTTAGATATCTGAGGAGCT 59.928 37.037 15.79 0.00 0.00 4.09
120 121 6.603940 ACCATTTAGATATCTGAGGAGCTC 57.396 41.667 15.79 4.71 0.00 4.09
121 122 6.322126 ACCATTTAGATATCTGAGGAGCTCT 58.678 40.000 15.79 0.00 0.00 4.09
122 123 6.437162 ACCATTTAGATATCTGAGGAGCTCTC 59.563 42.308 15.79 9.73 42.74 3.20
130 131 2.936919 TGAGGAGCTCTCAGCAAAAA 57.063 45.000 14.64 0.00 46.71 1.94
148 149 4.687901 AAAAAGACAAATTGGGGGTCTG 57.312 40.909 0.00 0.00 40.80 3.51
149 150 3.328535 AAAGACAAATTGGGGGTCTGT 57.671 42.857 0.00 0.00 40.80 3.41
150 151 4.463050 AAAGACAAATTGGGGGTCTGTA 57.537 40.909 0.00 0.00 40.80 2.74
151 152 4.463050 AAGACAAATTGGGGGTCTGTAA 57.537 40.909 0.00 0.00 40.80 2.41
152 153 4.463050 AGACAAATTGGGGGTCTGTAAA 57.537 40.909 0.00 0.00 40.21 2.01
153 154 4.810345 AGACAAATTGGGGGTCTGTAAAA 58.190 39.130 0.00 0.00 40.21 1.52
154 155 5.212745 AGACAAATTGGGGGTCTGTAAAAA 58.787 37.500 0.00 0.00 40.21 1.94
155 156 5.843969 AGACAAATTGGGGGTCTGTAAAAAT 59.156 36.000 0.00 0.00 40.21 1.82
156 157 5.863965 ACAAATTGGGGGTCTGTAAAAATG 58.136 37.500 0.00 0.00 0.00 2.32
157 158 5.368230 ACAAATTGGGGGTCTGTAAAAATGT 59.632 36.000 0.00 0.00 0.00 2.71
158 159 6.126623 ACAAATTGGGGGTCTGTAAAAATGTT 60.127 34.615 0.00 0.00 0.00 2.71
159 160 6.508030 AATTGGGGGTCTGTAAAAATGTTT 57.492 33.333 0.00 0.00 0.00 2.83
160 161 7.619512 AATTGGGGGTCTGTAAAAATGTTTA 57.380 32.000 0.00 0.00 0.00 2.01
161 162 6.408107 TTGGGGGTCTGTAAAAATGTTTAC 57.592 37.500 11.06 11.06 46.31 2.01
162 163 5.707495 TGGGGGTCTGTAAAAATGTTTACT 58.293 37.500 17.45 0.00 46.29 2.24
163 164 5.536916 TGGGGGTCTGTAAAAATGTTTACTG 59.463 40.000 17.45 16.56 46.29 2.74
164 165 5.537295 GGGGGTCTGTAAAAATGTTTACTGT 59.463 40.000 17.45 0.00 46.29 3.55
165 166 6.041182 GGGGGTCTGTAAAAATGTTTACTGTT 59.959 38.462 17.45 0.00 46.29 3.16
166 167 7.143340 GGGGTCTGTAAAAATGTTTACTGTTC 58.857 38.462 17.45 13.68 46.29 3.18
167 168 7.201839 GGGGTCTGTAAAAATGTTTACTGTTCA 60.202 37.037 17.45 1.80 46.29 3.18
168 169 8.357402 GGGTCTGTAAAAATGTTTACTGTTCAT 58.643 33.333 17.45 0.00 46.29 2.57
169 170 9.180678 GGTCTGTAAAAATGTTTACTGTTCATG 57.819 33.333 17.45 0.00 46.29 3.07
170 171 9.730420 GTCTGTAAAAATGTTTACTGTTCATGT 57.270 29.630 17.45 0.00 46.29 3.21
177 178 9.515020 AAAATGTTTACTGTTCATGTACTGTTG 57.485 29.630 17.65 3.06 33.15 3.33
178 179 7.801716 ATGTTTACTGTTCATGTACTGTTGT 57.198 32.000 17.65 7.83 33.15 3.32
179 180 7.010697 TGTTTACTGTTCATGTACTGTTGTG 57.989 36.000 17.65 0.00 33.15 3.33
180 181 6.037720 TGTTTACTGTTCATGTACTGTTGTGG 59.962 38.462 17.65 0.00 33.15 4.17
181 182 2.878406 ACTGTTCATGTACTGTTGTGGC 59.122 45.455 8.82 0.00 0.00 5.01
182 183 2.226330 TGTTCATGTACTGTTGTGGCC 58.774 47.619 0.00 0.00 0.00 5.36
183 184 2.158682 TGTTCATGTACTGTTGTGGCCT 60.159 45.455 3.32 0.00 0.00 5.19
184 185 2.183478 TCATGTACTGTTGTGGCCTG 57.817 50.000 3.32 0.00 0.00 4.85
185 186 1.696884 TCATGTACTGTTGTGGCCTGA 59.303 47.619 3.32 0.00 0.00 3.86
186 187 2.305635 TCATGTACTGTTGTGGCCTGAT 59.694 45.455 3.32 0.00 0.00 2.90
187 188 2.949177 TGTACTGTTGTGGCCTGATT 57.051 45.000 3.32 0.00 0.00 2.57
188 189 3.222173 TGTACTGTTGTGGCCTGATTT 57.778 42.857 3.32 0.00 0.00 2.17
189 190 2.884012 TGTACTGTTGTGGCCTGATTTG 59.116 45.455 3.32 0.00 0.00 2.32
190 191 2.071778 ACTGTTGTGGCCTGATTTGT 57.928 45.000 3.32 0.00 0.00 2.83
191 192 1.956477 ACTGTTGTGGCCTGATTTGTC 59.044 47.619 3.32 0.00 0.00 3.18
192 193 2.233271 CTGTTGTGGCCTGATTTGTCT 58.767 47.619 3.32 0.00 0.00 3.41
193 194 2.624838 CTGTTGTGGCCTGATTTGTCTT 59.375 45.455 3.32 0.00 0.00 3.01
194 195 3.030291 TGTTGTGGCCTGATTTGTCTTT 58.970 40.909 3.32 0.00 0.00 2.52
195 196 3.450457 TGTTGTGGCCTGATTTGTCTTTT 59.550 39.130 3.32 0.00 0.00 2.27
196 197 4.081198 TGTTGTGGCCTGATTTGTCTTTTT 60.081 37.500 3.32 0.00 0.00 1.94
216 217 6.974932 TTTTTGCTGAGAGCTACTTAGATG 57.025 37.500 8.48 0.00 42.97 2.90
217 218 5.667539 TTTGCTGAGAGCTACTTAGATGT 57.332 39.130 8.48 0.00 42.97 3.06
218 219 5.667539 TTGCTGAGAGCTACTTAGATGTT 57.332 39.130 8.48 0.00 42.97 2.71
219 220 5.255710 TGCTGAGAGCTACTTAGATGTTC 57.744 43.478 8.48 0.00 42.97 3.18
220 221 4.706962 TGCTGAGAGCTACTTAGATGTTCA 59.293 41.667 8.48 0.00 42.97 3.18
221 222 5.185828 TGCTGAGAGCTACTTAGATGTTCAA 59.814 40.000 8.48 0.00 42.97 2.69
222 223 6.102663 GCTGAGAGCTACTTAGATGTTCAAA 58.897 40.000 8.48 0.00 38.45 2.69
223 224 6.760770 GCTGAGAGCTACTTAGATGTTCAAAT 59.239 38.462 8.48 0.00 38.45 2.32
224 225 7.254387 GCTGAGAGCTACTTAGATGTTCAAATG 60.254 40.741 8.48 0.00 38.45 2.32
225 226 7.840931 TGAGAGCTACTTAGATGTTCAAATGA 58.159 34.615 0.00 0.00 0.00 2.57
226 227 7.761704 TGAGAGCTACTTAGATGTTCAAATGAC 59.238 37.037 0.00 0.00 0.00 3.06
227 228 7.846066 AGAGCTACTTAGATGTTCAAATGACT 58.154 34.615 0.00 0.00 0.00 3.41
228 229 8.317679 AGAGCTACTTAGATGTTCAAATGACTT 58.682 33.333 0.00 0.00 0.00 3.01
229 230 8.261492 AGCTACTTAGATGTTCAAATGACTTG 57.739 34.615 0.00 0.00 36.25 3.16
230 231 8.097038 AGCTACTTAGATGTTCAAATGACTTGA 58.903 33.333 0.00 0.00 42.48 3.02
242 243 6.148948 TCAAATGACTTGAAATTTGTAGCGG 58.851 36.000 0.00 0.00 41.21 5.52
243 244 4.701956 ATGACTTGAAATTTGTAGCGGG 57.298 40.909 0.00 0.00 0.00 6.13
244 245 2.227865 TGACTTGAAATTTGTAGCGGGC 59.772 45.455 0.00 0.00 0.00 6.13
245 246 1.544246 ACTTGAAATTTGTAGCGGGCC 59.456 47.619 0.00 0.00 0.00 5.80
246 247 1.818674 CTTGAAATTTGTAGCGGGCCT 59.181 47.619 0.84 0.00 0.00 5.19
247 248 1.459450 TGAAATTTGTAGCGGGCCTC 58.541 50.000 0.84 0.00 0.00 4.70
248 249 1.271652 TGAAATTTGTAGCGGGCCTCA 60.272 47.619 0.84 0.00 0.00 3.86
249 250 1.132453 GAAATTTGTAGCGGGCCTCAC 59.868 52.381 0.84 0.00 0.00 3.51
250 251 1.024579 AATTTGTAGCGGGCCTCACG 61.025 55.000 0.84 0.00 0.00 4.35
257 258 2.745884 CGGGCCTCACGCATCAAA 60.746 61.111 0.84 0.00 40.31 2.69
258 259 2.114670 CGGGCCTCACGCATCAAAT 61.115 57.895 0.84 0.00 40.31 2.32
259 260 1.656818 CGGGCCTCACGCATCAAATT 61.657 55.000 0.84 0.00 40.31 1.82
260 261 0.179129 GGGCCTCACGCATCAAATTG 60.179 55.000 0.84 0.00 40.31 2.32
261 262 0.527565 GGCCTCACGCATCAAATTGT 59.472 50.000 0.00 0.00 40.31 2.71
262 263 1.468054 GGCCTCACGCATCAAATTGTC 60.468 52.381 0.00 0.00 40.31 3.18
263 264 1.470098 GCCTCACGCATCAAATTGTCT 59.530 47.619 0.00 0.00 37.47 3.41
264 265 2.730090 GCCTCACGCATCAAATTGTCTG 60.730 50.000 0.00 0.00 37.47 3.51
265 266 2.743664 CCTCACGCATCAAATTGTCTGA 59.256 45.455 0.00 0.00 0.00 3.27
266 267 3.189080 CCTCACGCATCAAATTGTCTGAA 59.811 43.478 0.00 0.00 0.00 3.02
267 268 4.145876 TCACGCATCAAATTGTCTGAAC 57.854 40.909 0.00 0.00 0.00 3.18
268 269 3.814842 TCACGCATCAAATTGTCTGAACT 59.185 39.130 0.00 0.00 0.00 3.01
269 270 4.275689 TCACGCATCAAATTGTCTGAACTT 59.724 37.500 0.00 0.00 0.00 2.66
270 271 4.977963 CACGCATCAAATTGTCTGAACTTT 59.022 37.500 0.00 0.00 0.00 2.66
271 272 5.459762 CACGCATCAAATTGTCTGAACTTTT 59.540 36.000 0.00 0.00 0.00 2.27
272 273 6.019640 CACGCATCAAATTGTCTGAACTTTTT 60.020 34.615 0.00 0.00 0.00 1.94
273 274 6.019640 ACGCATCAAATTGTCTGAACTTTTTG 60.020 34.615 0.00 0.00 33.23 2.44
274 275 6.198778 CGCATCAAATTGTCTGAACTTTTTGA 59.801 34.615 0.00 0.00 39.26 2.69
275 276 7.095940 CGCATCAAATTGTCTGAACTTTTTGAT 60.096 33.333 10.69 10.69 42.19 2.57
276 277 8.553696 GCATCAAATTGTCTGAACTTTTTGATT 58.446 29.630 12.53 2.46 41.02 2.57
279 280 8.806634 TCAAATTGTCTGAACTTTTTGATTTCG 58.193 29.630 0.00 0.00 34.73 3.46
280 281 8.594687 CAAATTGTCTGAACTTTTTGATTTCGT 58.405 29.630 0.00 0.00 33.50 3.85
281 282 8.702163 AATTGTCTGAACTTTTTGATTTCGTT 57.298 26.923 0.00 0.00 0.00 3.85
282 283 8.702163 ATTGTCTGAACTTTTTGATTTCGTTT 57.298 26.923 0.00 0.00 0.00 3.60
283 284 8.527567 TTGTCTGAACTTTTTGATTTCGTTTT 57.472 26.923 0.00 0.00 0.00 2.43
284 285 7.948137 TGTCTGAACTTTTTGATTTCGTTTTG 58.052 30.769 0.00 0.00 0.00 2.44
285 286 7.810282 TGTCTGAACTTTTTGATTTCGTTTTGA 59.190 29.630 0.00 0.00 0.00 2.69
286 287 8.643752 GTCTGAACTTTTTGATTTCGTTTTGAA 58.356 29.630 0.00 0.00 33.85 2.69
319 320 3.651803 TTTTCTAACCGGGTGCAAATG 57.348 42.857 0.00 0.00 0.00 2.32
320 321 2.570415 TTCTAACCGGGTGCAAATGA 57.430 45.000 0.00 0.00 0.00 2.57
321 322 2.107950 TCTAACCGGGTGCAAATGAG 57.892 50.000 0.00 0.00 0.00 2.90
322 323 0.451783 CTAACCGGGTGCAAATGAGC 59.548 55.000 0.00 0.00 0.00 4.26
323 324 0.963355 TAACCGGGTGCAAATGAGCC 60.963 55.000 0.00 0.00 0.00 4.70
324 325 2.361610 CCGGGTGCAAATGAGCCT 60.362 61.111 0.00 0.00 0.00 4.58
325 326 2.703798 CCGGGTGCAAATGAGCCTG 61.704 63.158 0.00 0.00 0.00 4.85
326 327 1.675310 CGGGTGCAAATGAGCCTGA 60.675 57.895 0.00 0.00 0.00 3.86
327 328 1.651240 CGGGTGCAAATGAGCCTGAG 61.651 60.000 0.00 0.00 0.00 3.35
328 329 1.509923 GGTGCAAATGAGCCTGAGC 59.490 57.895 0.00 0.00 40.32 4.26
329 330 1.246056 GGTGCAAATGAGCCTGAGCA 61.246 55.000 0.00 0.00 43.56 4.26
330 331 0.109412 GTGCAAATGAGCCTGAGCAC 60.109 55.000 0.00 0.00 44.31 4.40
331 332 1.246056 TGCAAATGAGCCTGAGCACC 61.246 55.000 0.00 0.00 43.56 5.01
332 333 1.246056 GCAAATGAGCCTGAGCACCA 61.246 55.000 0.00 0.00 43.56 4.17
333 334 1.250328 CAAATGAGCCTGAGCACCAA 58.750 50.000 0.00 0.00 43.56 3.67
334 335 1.614903 CAAATGAGCCTGAGCACCAAA 59.385 47.619 0.00 0.00 43.56 3.28
335 336 1.999648 AATGAGCCTGAGCACCAAAA 58.000 45.000 0.00 0.00 43.56 2.44
336 337 1.251251 ATGAGCCTGAGCACCAAAAC 58.749 50.000 0.00 0.00 43.56 2.43
337 338 1.165907 TGAGCCTGAGCACCAAAACG 61.166 55.000 0.00 0.00 43.56 3.60
338 339 2.050077 GCCTGAGCACCAAAACGC 60.050 61.111 0.00 0.00 39.53 4.84
339 340 2.644992 CCTGAGCACCAAAACGCC 59.355 61.111 0.00 0.00 0.00 5.68
340 341 2.644992 CTGAGCACCAAAACGCCC 59.355 61.111 0.00 0.00 0.00 6.13
341 342 1.898574 CTGAGCACCAAAACGCCCT 60.899 57.895 0.00 0.00 0.00 5.19
342 343 0.605319 CTGAGCACCAAAACGCCCTA 60.605 55.000 0.00 0.00 0.00 3.53
343 344 0.887387 TGAGCACCAAAACGCCCTAC 60.887 55.000 0.00 0.00 0.00 3.18
344 345 0.605589 GAGCACCAAAACGCCCTACT 60.606 55.000 0.00 0.00 0.00 2.57
351 352 0.105408 AAAACGCCCTACTCACACGT 59.895 50.000 0.00 0.00 38.88 4.49
356 357 0.673644 GCCCTACTCACACGTGCAAT 60.674 55.000 17.22 1.08 0.00 3.56
368 369 4.562394 CACACGTGCAATTTGTTTTCTCTT 59.438 37.500 17.22 0.00 0.00 2.85
377 378 6.863645 GCAATTTGTTTTCTCTTACTCCCTTC 59.136 38.462 0.00 0.00 0.00 3.46
401 410 5.314529 CCTATTGTCGATACTCACCTCCTA 58.685 45.833 0.00 0.00 0.00 2.94
419 428 2.434702 CCTAAGTCTATTGCTTCCCCGT 59.565 50.000 0.00 0.00 0.00 5.28
435 445 1.605058 CCGTCTCGACCACCCATCTT 61.605 60.000 0.00 0.00 0.00 2.40
474 484 0.040514 CATTTGTGTCGCCGCTTTCA 60.041 50.000 0.00 0.00 0.00 2.69
479 489 0.452784 GTGTCGCCGCTTTCATTCAC 60.453 55.000 0.00 0.00 0.00 3.18
485 495 1.401539 GCCGCTTTCATTCACCACTTC 60.402 52.381 0.00 0.00 0.00 3.01
538 551 2.188524 CTCAACATGTCGACATCTCGG 58.811 52.381 27.79 18.55 40.58 4.63
548 561 4.227134 CATCTCGGCCACCCCTCG 62.227 72.222 2.24 0.00 0.00 4.63
567 581 1.334243 CGTTATCAGTCGAGAGTCCCC 59.666 57.143 0.00 0.00 0.00 4.81
613 627 9.124807 GATTTGATTAAGGTGGTAACTTTTTCG 57.875 33.333 0.00 0.00 37.61 3.46
650 664 6.092807 ACTCGAAGCAGAATTAATGAAAGTCC 59.907 38.462 0.00 0.00 32.52 3.85
697 711 2.941720 TGGTGCATTTTCTTTTTGTGGC 59.058 40.909 0.00 0.00 0.00 5.01
701 715 3.622163 TGCATTTTCTTTTTGTGGCACTG 59.378 39.130 19.83 5.53 0.00 3.66
714 728 6.463995 TTGTGGCACTGTTTAAGAAGAATT 57.536 33.333 19.83 0.00 0.00 2.17
800 4335 6.687958 GCCACGTTTAATAAGCGCTTTATTAA 59.312 34.615 30.13 26.54 45.63 1.40
1352 4894 5.527214 TGCGAGGATTTAATCGTGATTCATT 59.473 36.000 4.81 0.00 40.97 2.57
1374 4916 9.002600 TCATTTATCGGATGGATTGTTTGATAG 57.997 33.333 0.00 0.00 36.55 2.08
1492 5037 4.616143 CGGTCACTCTTCTTCGAATTCTCA 60.616 45.833 0.00 0.00 0.00 3.27
1563 5108 1.579429 CAGCAGGCGGTGTTTAACC 59.421 57.895 0.00 0.00 46.60 2.85
1675 5220 3.444703 CTCGCTAGCAACTTCTATGGT 57.555 47.619 16.45 0.00 0.00 3.55
1738 5283 6.054941 GTGTACATGGTGTGGATGATGAATA 58.945 40.000 0.00 0.00 0.00 1.75
1872 5417 1.421268 TCCTGCAGATTCCAGTGTTGT 59.579 47.619 17.39 0.00 0.00 3.32
1990 5535 3.681417 TGTATGAATATGCTCTCATGCGC 59.319 43.478 0.00 0.00 37.45 6.09
2021 5566 8.232913 TGGATATGATTAAAAAGCACTAACCC 57.767 34.615 0.00 0.00 0.00 4.11
2310 5859 7.063308 CCATTTCCATTAAAGAAATCACCAACG 59.937 37.037 11.81 0.00 40.98 4.10
2412 5967 7.219484 TCTTGAGCCTTATTTCTTTTCCTTG 57.781 36.000 0.00 0.00 0.00 3.61
2508 6063 6.708502 TGCTTTGTACATTACTTGCAACTCTA 59.291 34.615 0.00 0.00 0.00 2.43
2547 6102 4.336889 TCTGTCTTGTACCTTTGGACTG 57.663 45.455 0.00 0.00 0.00 3.51
2685 6240 6.866480 TGGAAAGATTCAAGGTATGCAATTC 58.134 36.000 0.00 0.00 0.00 2.17
2691 6246 3.937814 TCAAGGTATGCAATTCGTGAGT 58.062 40.909 0.00 0.00 0.00 3.41
3020 6575 7.625469 ACTAGGAACCCTCATTTTAGAAAGAG 58.375 38.462 0.00 0.00 34.61 2.85
3144 6700 3.378427 CCCACTTATTTGCTAGTGCCTTC 59.622 47.826 0.00 0.00 40.28 3.46
3190 6746 4.681074 TGTGCAACTATCGGAATATCCA 57.319 40.909 0.00 0.00 34.78 3.41
3335 6892 0.607762 TGTTGCGCTGGCCTTCATTA 60.608 50.000 9.73 0.00 38.85 1.90
3497 7054 1.405797 CCTTGTAATGGTTCGGCCGTA 60.406 52.381 27.15 14.12 41.21 4.02
3500 7057 2.098614 TGTAATGGTTCGGCCGTAGTA 58.901 47.619 27.15 11.20 41.21 1.82
3820 7379 2.553602 TGTGTTGCTTTCTATGCCTGTG 59.446 45.455 0.00 0.00 0.00 3.66
3833 7392 5.874810 TCTATGCCTGTGTGTAGTTTGATTC 59.125 40.000 0.00 0.00 0.00 2.52
4465 8038 0.680921 GGCTGCTGTTGAGGGCATTA 60.681 55.000 0.00 0.00 37.83 1.90
4585 8158 8.408043 ACCATACAAAAGAATCATTGTCAAGA 57.592 30.769 7.54 0.00 40.14 3.02
4786 8359 4.497473 TTTTTGTTCATCTTAGGGCGTG 57.503 40.909 0.00 0.00 0.00 5.34
4787 8360 2.851263 TTGTTCATCTTAGGGCGTGT 57.149 45.000 0.00 0.00 0.00 4.49
4788 8361 2.851263 TGTTCATCTTAGGGCGTGTT 57.149 45.000 0.00 0.00 0.00 3.32
4789 8362 2.695359 TGTTCATCTTAGGGCGTGTTC 58.305 47.619 0.00 0.00 0.00 3.18
4790 8363 1.659098 GTTCATCTTAGGGCGTGTTCG 59.341 52.381 0.00 0.00 40.37 3.95
4791 8364 0.174845 TCATCTTAGGGCGTGTTCGG 59.825 55.000 0.00 0.00 37.56 4.30
4792 8365 0.810031 CATCTTAGGGCGTGTTCGGG 60.810 60.000 0.00 0.00 37.56 5.14
4793 8366 0.974010 ATCTTAGGGCGTGTTCGGGA 60.974 55.000 0.00 0.00 37.56 5.14
4794 8367 1.447314 CTTAGGGCGTGTTCGGGAC 60.447 63.158 0.00 0.00 37.56 4.46
4795 8368 2.847435 CTTAGGGCGTGTTCGGGACC 62.847 65.000 0.00 0.00 37.56 4.46
4798 8371 4.754667 GGCGTGTTCGGGACCCTC 62.755 72.222 9.41 0.00 37.56 4.30
4799 8372 4.754667 GCGTGTTCGGGACCCTCC 62.755 72.222 9.41 0.00 37.56 4.30
4800 8373 3.307906 CGTGTTCGGGACCCTCCA 61.308 66.667 9.41 0.00 38.64 3.86
4801 8374 2.663196 GTGTTCGGGACCCTCCAG 59.337 66.667 9.41 0.00 38.64 3.86
4802 8375 3.319198 TGTTCGGGACCCTCCAGC 61.319 66.667 9.41 0.00 38.64 4.85
4803 8376 3.003763 GTTCGGGACCCTCCAGCT 61.004 66.667 9.41 0.00 38.64 4.24
4804 8377 2.203938 TTCGGGACCCTCCAGCTT 60.204 61.111 9.41 0.00 38.64 3.74
4805 8378 1.846124 TTCGGGACCCTCCAGCTTT 60.846 57.895 9.41 0.00 38.64 3.51
4806 8379 2.045926 CGGGACCCTCCAGCTTTG 60.046 66.667 9.41 0.00 38.64 2.77
4807 8380 2.895424 CGGGACCCTCCAGCTTTGT 61.895 63.158 9.41 0.00 38.64 2.83
4808 8381 1.002011 GGGACCCTCCAGCTTTGTC 60.002 63.158 2.09 0.00 38.64 3.18
4809 8382 1.492993 GGGACCCTCCAGCTTTGTCT 61.493 60.000 2.09 0.00 38.64 3.41
4810 8383 0.322008 GGACCCTCCAGCTTTGTCTG 60.322 60.000 0.00 0.00 36.28 3.51
4811 8384 0.398318 GACCCTCCAGCTTTGTCTGT 59.602 55.000 0.00 0.00 32.32 3.41
4812 8385 0.109342 ACCCTCCAGCTTTGTCTGTG 59.891 55.000 0.00 0.00 32.32 3.66
4813 8386 0.397941 CCCTCCAGCTTTGTCTGTGA 59.602 55.000 0.00 0.00 32.32 3.58
4814 8387 1.004044 CCCTCCAGCTTTGTCTGTGAT 59.996 52.381 0.00 0.00 32.32 3.06
4815 8388 2.082231 CCTCCAGCTTTGTCTGTGATG 58.918 52.381 0.00 0.00 32.32 3.07
4816 8389 2.082231 CTCCAGCTTTGTCTGTGATGG 58.918 52.381 0.00 0.00 32.32 3.51
4817 8390 1.699083 TCCAGCTTTGTCTGTGATGGA 59.301 47.619 0.00 0.00 33.11 3.41
4818 8391 2.106338 TCCAGCTTTGTCTGTGATGGAA 59.894 45.455 0.00 0.00 32.62 3.53
4819 8392 2.486982 CCAGCTTTGTCTGTGATGGAAG 59.513 50.000 0.00 0.00 32.32 3.46
4820 8393 2.095364 CAGCTTTGTCTGTGATGGAAGC 60.095 50.000 0.00 0.00 39.67 3.86
4821 8394 2.157738 GCTTTGTCTGTGATGGAAGCT 58.842 47.619 0.00 0.00 37.21 3.74
4822 8395 2.095364 GCTTTGTCTGTGATGGAAGCTG 60.095 50.000 0.00 0.00 37.21 4.24
4823 8396 2.189594 TTGTCTGTGATGGAAGCTGG 57.810 50.000 0.00 0.00 0.00 4.85
4824 8397 0.321919 TGTCTGTGATGGAAGCTGGC 60.322 55.000 0.00 0.00 0.00 4.85
4825 8398 0.035630 GTCTGTGATGGAAGCTGGCT 60.036 55.000 0.00 0.00 0.00 4.75
4826 8399 0.035725 TCTGTGATGGAAGCTGGCTG 60.036 55.000 0.00 0.00 0.00 4.85
4827 8400 0.322277 CTGTGATGGAAGCTGGCTGT 60.322 55.000 0.00 0.00 0.00 4.40
4828 8401 0.111061 TGTGATGGAAGCTGGCTGTT 59.889 50.000 0.00 0.00 0.00 3.16
4829 8402 0.524862 GTGATGGAAGCTGGCTGTTG 59.475 55.000 0.00 0.00 0.00 3.33
4830 8403 0.609957 TGATGGAAGCTGGCTGTTGG 60.610 55.000 0.00 0.00 0.00 3.77
4831 8404 1.941999 GATGGAAGCTGGCTGTTGGC 61.942 60.000 0.00 0.00 40.90 4.52
4832 8405 2.598394 GGAAGCTGGCTGTTGGCA 60.598 61.111 0.00 0.00 46.87 4.92
4853 8426 4.162690 GGCGGCGGAGTTGAGGAT 62.163 66.667 9.78 0.00 0.00 3.24
4854 8427 2.125106 GCGGCGGAGTTGAGGATT 60.125 61.111 9.78 0.00 0.00 3.01
4855 8428 1.745489 GCGGCGGAGTTGAGGATTT 60.745 57.895 9.78 0.00 0.00 2.17
4856 8429 1.305930 GCGGCGGAGTTGAGGATTTT 61.306 55.000 9.78 0.00 0.00 1.82
4857 8430 0.447801 CGGCGGAGTTGAGGATTTTG 59.552 55.000 0.00 0.00 0.00 2.44
4858 8431 1.534729 GGCGGAGTTGAGGATTTTGT 58.465 50.000 0.00 0.00 0.00 2.83
4859 8432 1.200020 GGCGGAGTTGAGGATTTTGTG 59.800 52.381 0.00 0.00 0.00 3.33
4860 8433 1.200020 GCGGAGTTGAGGATTTTGTGG 59.800 52.381 0.00 0.00 0.00 4.17
4861 8434 1.200020 CGGAGTTGAGGATTTTGTGGC 59.800 52.381 0.00 0.00 0.00 5.01
4862 8435 2.519013 GGAGTTGAGGATTTTGTGGCT 58.481 47.619 0.00 0.00 0.00 4.75
4863 8436 2.229784 GGAGTTGAGGATTTTGTGGCTG 59.770 50.000 0.00 0.00 0.00 4.85
4864 8437 2.229784 GAGTTGAGGATTTTGTGGCTGG 59.770 50.000 0.00 0.00 0.00 4.85
4865 8438 1.273327 GTTGAGGATTTTGTGGCTGGG 59.727 52.381 0.00 0.00 0.00 4.45
4866 8439 0.251742 TGAGGATTTTGTGGCTGGGG 60.252 55.000 0.00 0.00 0.00 4.96
4867 8440 0.039618 GAGGATTTTGTGGCTGGGGA 59.960 55.000 0.00 0.00 0.00 4.81
4868 8441 0.040204 AGGATTTTGTGGCTGGGGAG 59.960 55.000 0.00 0.00 0.00 4.30
4869 8442 0.972471 GGATTTTGTGGCTGGGGAGG 60.972 60.000 0.00 0.00 0.00 4.30
4870 8443 0.972471 GATTTTGTGGCTGGGGAGGG 60.972 60.000 0.00 0.00 0.00 4.30
4871 8444 3.826265 TTTTGTGGCTGGGGAGGGC 62.826 63.158 0.00 0.00 0.00 5.19
4882 8455 4.452733 GGAGGGCTCCCGAACACG 62.453 72.222 0.00 0.00 43.94 4.49
5152 8725 6.470557 AAAGACGGACGAAAATAAATCGAA 57.529 33.333 2.65 0.00 42.76 3.71
5156 8729 3.242511 CGGACGAAAATAAATCGAACCCC 60.243 47.826 2.65 0.00 42.76 4.95
5290 8863 1.974236 CACAGGGACAGGAGAAGAAGT 59.026 52.381 0.00 0.00 0.00 3.01
5292 8865 1.277557 CAGGGACAGGAGAAGAAGTGG 59.722 57.143 0.00 0.00 0.00 4.00
5353 8926 0.759436 ACTGAAGACGACCCCACTGT 60.759 55.000 0.00 0.00 0.00 3.55
5395 8968 3.376935 AAGCTGAGGCCGACGATGG 62.377 63.158 0.00 0.00 39.73 3.51
5678 9251 3.526430 TGGCCTCTCCAGTAGTAGTTCTA 59.474 47.826 3.32 0.00 40.72 2.10
5689 9262 9.406113 TCCAGTAGTAGTTCTATTTAGAGTTCC 57.594 37.037 0.00 0.00 33.21 3.62
5984 9634 5.929992 TGCATTTCTACTACTGTAGCGTTTT 59.070 36.000 14.55 0.00 44.26 2.43
5985 9635 6.090358 TGCATTTCTACTACTGTAGCGTTTTC 59.910 38.462 14.55 0.00 44.26 2.29
5986 9636 6.455246 GCATTTCTACTACTGTAGCGTTTTCC 60.455 42.308 14.55 0.00 44.26 3.13
6028 9678 2.695359 TCGAATGTTTCTACTGCACCC 58.305 47.619 0.00 0.00 0.00 4.61
6060 9710 3.066380 CCCTTGCCTTTTTAATGTGTGC 58.934 45.455 0.00 0.00 0.00 4.57
6090 9741 3.788227 AGCATAGAACCACAAACCAGA 57.212 42.857 0.00 0.00 0.00 3.86
6143 10136 3.831715 TGATACACACGTCACAGAGAG 57.168 47.619 0.00 0.00 0.00 3.20
6144 10137 3.408634 TGATACACACGTCACAGAGAGA 58.591 45.455 0.00 0.00 0.00 3.10
6169 10162 3.261981 ACCCATAATCGAGGTTGTCAC 57.738 47.619 0.00 0.00 0.00 3.67
6211 10205 0.604511 TACACGAGACAGCGACTCCA 60.605 55.000 0.00 0.00 34.83 3.86
6213 10207 0.109086 CACGAGACAGCGACTCCAAT 60.109 55.000 0.00 0.00 34.83 3.16
6216 10210 1.656095 CGAGACAGCGACTCCAATTTC 59.344 52.381 0.00 0.00 0.00 2.17
6253 10247 0.937699 CGAAGTCCTCGTCGCAACAA 60.938 55.000 0.00 0.00 42.89 2.83
6271 10265 1.336440 CAAACGCCAGAACCAATGTCA 59.664 47.619 0.00 0.00 0.00 3.58
6274 10268 0.957395 CGCCAGAACCAATGTCAGCT 60.957 55.000 0.00 0.00 0.00 4.24
6286 10280 1.241165 TGTCAGCTCATGCCAAACAG 58.759 50.000 0.00 0.00 40.80 3.16
6288 10282 1.198637 GTCAGCTCATGCCAAACAGTC 59.801 52.381 0.00 0.00 40.80 3.51
6290 10284 0.035317 AGCTCATGCCAAACAGTCGA 59.965 50.000 0.00 0.00 40.80 4.20
6300 10294 1.963464 AAACAGTCGACCACCCGTGT 61.963 55.000 13.01 5.96 0.00 4.49
6308 10302 4.619227 CCACCCGTGTTGACGCCT 62.619 66.667 0.00 0.00 44.68 5.52
6312 10306 1.255667 ACCCGTGTTGACGCCTAGAT 61.256 55.000 0.00 0.00 44.68 1.98
6335 10329 0.756294 TCTGACTTGAAGACCGCCAA 59.244 50.000 0.00 0.00 0.00 4.52
6399 10393 0.666577 AAAGCGCGGCGACTATATCC 60.667 55.000 28.54 5.33 0.00 2.59
6447 10519 4.464951 TCTCGCTGAAGGGTCTACAATAAA 59.535 41.667 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 7.254252 CGCATCAAATTTTCTACCACACAAAAA 60.254 33.333 0.00 0.00 0.00 1.94
49 50 6.199908 CGCATCAAATTTTCTACCACACAAAA 59.800 34.615 0.00 0.00 0.00 2.44
50 51 5.689514 CGCATCAAATTTTCTACCACACAAA 59.310 36.000 0.00 0.00 0.00 2.83
51 52 5.218885 CGCATCAAATTTTCTACCACACAA 58.781 37.500 0.00 0.00 0.00 3.33
52 53 4.277174 ACGCATCAAATTTTCTACCACACA 59.723 37.500 0.00 0.00 0.00 3.72
53 54 4.616802 CACGCATCAAATTTTCTACCACAC 59.383 41.667 0.00 0.00 0.00 3.82
54 55 4.517075 TCACGCATCAAATTTTCTACCACA 59.483 37.500 0.00 0.00 0.00 4.17
55 56 5.041951 TCACGCATCAAATTTTCTACCAC 57.958 39.130 0.00 0.00 0.00 4.16
56 57 4.155826 CCTCACGCATCAAATTTTCTACCA 59.844 41.667 0.00 0.00 0.00 3.25
57 58 4.156008 ACCTCACGCATCAAATTTTCTACC 59.844 41.667 0.00 0.00 0.00 3.18
58 59 5.296813 ACCTCACGCATCAAATTTTCTAC 57.703 39.130 0.00 0.00 0.00 2.59
59 60 4.394920 GGACCTCACGCATCAAATTTTCTA 59.605 41.667 0.00 0.00 0.00 2.10
60 61 3.191371 GGACCTCACGCATCAAATTTTCT 59.809 43.478 0.00 0.00 0.00 2.52
61 62 3.057596 TGGACCTCACGCATCAAATTTTC 60.058 43.478 0.00 0.00 0.00 2.29
62 63 2.890311 TGGACCTCACGCATCAAATTTT 59.110 40.909 0.00 0.00 0.00 1.82
63 64 2.228822 GTGGACCTCACGCATCAAATTT 59.771 45.455 0.00 0.00 36.56 1.82
64 65 1.812571 GTGGACCTCACGCATCAAATT 59.187 47.619 0.00 0.00 36.56 1.82
65 66 1.453155 GTGGACCTCACGCATCAAAT 58.547 50.000 0.00 0.00 36.56 2.32
66 67 2.927004 GTGGACCTCACGCATCAAA 58.073 52.632 0.00 0.00 36.56 2.69
67 68 4.693532 GTGGACCTCACGCATCAA 57.306 55.556 0.00 0.00 36.56 2.57
74 75 3.486383 TGAAAATTGGAGTGGACCTCAC 58.514 45.455 0.00 0.00 46.39 3.51
75 76 3.874383 TGAAAATTGGAGTGGACCTCA 57.126 42.857 0.00 0.00 42.40 3.86
76 77 4.262036 GGTTTGAAAATTGGAGTGGACCTC 60.262 45.833 0.00 0.00 39.67 3.85
77 78 3.641436 GGTTTGAAAATTGGAGTGGACCT 59.359 43.478 0.00 0.00 0.00 3.85
78 79 3.386402 TGGTTTGAAAATTGGAGTGGACC 59.614 43.478 0.00 0.00 0.00 4.46
79 80 4.664150 TGGTTTGAAAATTGGAGTGGAC 57.336 40.909 0.00 0.00 0.00 4.02
80 81 5.885449 AATGGTTTGAAAATTGGAGTGGA 57.115 34.783 0.00 0.00 0.00 4.02
81 82 7.441017 TCTAAATGGTTTGAAAATTGGAGTGG 58.559 34.615 0.00 0.00 0.00 4.00
90 91 9.973661 TCCTCAGATATCTAAATGGTTTGAAAA 57.026 29.630 4.54 0.00 0.00 2.29
91 92 9.618890 CTCCTCAGATATCTAAATGGTTTGAAA 57.381 33.333 4.54 0.00 0.00 2.69
92 93 7.716998 GCTCCTCAGATATCTAAATGGTTTGAA 59.283 37.037 4.54 0.00 0.00 2.69
93 94 7.071698 AGCTCCTCAGATATCTAAATGGTTTGA 59.928 37.037 4.54 0.00 0.00 2.69
94 95 7.222872 AGCTCCTCAGATATCTAAATGGTTTG 58.777 38.462 4.54 0.00 0.00 2.93
95 96 7.292120 AGAGCTCCTCAGATATCTAAATGGTTT 59.708 37.037 10.93 0.00 32.06 3.27
96 97 6.786959 AGAGCTCCTCAGATATCTAAATGGTT 59.213 38.462 10.93 0.00 32.06 3.67
97 98 6.322126 AGAGCTCCTCAGATATCTAAATGGT 58.678 40.000 10.93 1.06 32.06 3.55
98 99 6.436847 TGAGAGCTCCTCAGATATCTAAATGG 59.563 42.308 10.93 5.65 46.38 3.16
99 100 7.465353 TGAGAGCTCCTCAGATATCTAAATG 57.535 40.000 10.93 0.00 46.38 2.32
127 128 4.037222 ACAGACCCCCAATTTGTCTTTTT 58.963 39.130 0.00 0.00 37.25 1.94
128 129 3.653164 ACAGACCCCCAATTTGTCTTTT 58.347 40.909 0.00 0.00 37.25 2.27
129 130 3.328535 ACAGACCCCCAATTTGTCTTT 57.671 42.857 0.00 0.00 37.25 2.52
130 131 4.463050 TTACAGACCCCCAATTTGTCTT 57.537 40.909 0.00 0.00 37.25 3.01
131 132 4.463050 TTTACAGACCCCCAATTTGTCT 57.537 40.909 0.00 0.00 39.86 3.41
132 133 5.538849 TTTTTACAGACCCCCAATTTGTC 57.461 39.130 0.00 0.00 0.00 3.18
133 134 5.368230 ACATTTTTACAGACCCCCAATTTGT 59.632 36.000 0.00 0.00 0.00 2.83
134 135 5.863965 ACATTTTTACAGACCCCCAATTTG 58.136 37.500 0.00 0.00 0.00 2.32
135 136 6.508030 AACATTTTTACAGACCCCCAATTT 57.492 33.333 0.00 0.00 0.00 1.82
136 137 6.508030 AAACATTTTTACAGACCCCCAATT 57.492 33.333 0.00 0.00 0.00 2.32
137 138 6.785466 AGTAAACATTTTTACAGACCCCCAAT 59.215 34.615 15.08 0.00 46.66 3.16
138 139 6.041069 CAGTAAACATTTTTACAGACCCCCAA 59.959 38.462 15.08 0.00 46.66 4.12
139 140 5.536916 CAGTAAACATTTTTACAGACCCCCA 59.463 40.000 15.08 0.00 46.66 4.96
140 141 5.537295 ACAGTAAACATTTTTACAGACCCCC 59.463 40.000 15.08 0.00 46.66 5.40
141 142 6.644248 ACAGTAAACATTTTTACAGACCCC 57.356 37.500 15.08 0.00 46.66 4.95
142 143 7.708998 TGAACAGTAAACATTTTTACAGACCC 58.291 34.615 15.08 4.91 46.66 4.46
143 144 9.180678 CATGAACAGTAAACATTTTTACAGACC 57.819 33.333 15.08 6.74 46.66 3.85
144 145 9.730420 ACATGAACAGTAAACATTTTTACAGAC 57.270 29.630 15.08 8.61 46.66 3.51
151 152 9.515020 CAACAGTACATGAACAGTAAACATTTT 57.485 29.630 0.00 0.00 0.00 1.82
152 153 8.682710 ACAACAGTACATGAACAGTAAACATTT 58.317 29.630 0.00 0.00 0.00 2.32
153 154 8.128582 CACAACAGTACATGAACAGTAAACATT 58.871 33.333 0.00 0.00 0.00 2.71
154 155 7.255104 CCACAACAGTACATGAACAGTAAACAT 60.255 37.037 0.00 0.00 0.00 2.71
155 156 6.037720 CCACAACAGTACATGAACAGTAAACA 59.962 38.462 0.00 0.00 0.00 2.83
156 157 6.427150 CCACAACAGTACATGAACAGTAAAC 58.573 40.000 0.00 0.00 0.00 2.01
157 158 5.008217 GCCACAACAGTACATGAACAGTAAA 59.992 40.000 0.00 0.00 0.00 2.01
158 159 4.513692 GCCACAACAGTACATGAACAGTAA 59.486 41.667 0.00 0.00 0.00 2.24
159 160 4.062293 GCCACAACAGTACATGAACAGTA 58.938 43.478 0.00 0.00 0.00 2.74
160 161 2.878406 GCCACAACAGTACATGAACAGT 59.122 45.455 0.00 0.00 0.00 3.55
161 162 2.226437 GGCCACAACAGTACATGAACAG 59.774 50.000 0.00 0.00 0.00 3.16
162 163 2.158682 AGGCCACAACAGTACATGAACA 60.159 45.455 5.01 0.00 0.00 3.18
163 164 2.226437 CAGGCCACAACAGTACATGAAC 59.774 50.000 5.01 0.00 0.00 3.18
164 165 2.105649 TCAGGCCACAACAGTACATGAA 59.894 45.455 5.01 0.00 0.00 2.57
165 166 1.696884 TCAGGCCACAACAGTACATGA 59.303 47.619 5.01 0.00 0.00 3.07
166 167 2.183478 TCAGGCCACAACAGTACATG 57.817 50.000 5.01 0.00 0.00 3.21
167 168 3.439857 AATCAGGCCACAACAGTACAT 57.560 42.857 5.01 0.00 0.00 2.29
168 169 2.884012 CAAATCAGGCCACAACAGTACA 59.116 45.455 5.01 0.00 0.00 2.90
169 170 2.884639 ACAAATCAGGCCACAACAGTAC 59.115 45.455 5.01 0.00 0.00 2.73
170 171 3.146066 GACAAATCAGGCCACAACAGTA 58.854 45.455 5.01 0.00 0.00 2.74
171 172 1.956477 GACAAATCAGGCCACAACAGT 59.044 47.619 5.01 0.00 0.00 3.55
172 173 2.233271 AGACAAATCAGGCCACAACAG 58.767 47.619 5.01 0.00 0.00 3.16
173 174 2.363306 AGACAAATCAGGCCACAACA 57.637 45.000 5.01 0.00 0.00 3.33
174 175 3.733443 AAAGACAAATCAGGCCACAAC 57.267 42.857 5.01 0.00 0.00 3.32
175 176 4.751767 AAAAAGACAAATCAGGCCACAA 57.248 36.364 5.01 0.00 0.00 3.33
193 194 6.467677 ACATCTAAGTAGCTCTCAGCAAAAA 58.532 36.000 0.00 0.00 45.56 1.94
194 195 6.042638 ACATCTAAGTAGCTCTCAGCAAAA 57.957 37.500 0.00 0.00 45.56 2.44
195 196 5.667539 ACATCTAAGTAGCTCTCAGCAAA 57.332 39.130 0.00 0.00 45.56 3.68
196 197 5.185828 TGAACATCTAAGTAGCTCTCAGCAA 59.814 40.000 0.00 0.00 45.56 3.91
197 198 4.706962 TGAACATCTAAGTAGCTCTCAGCA 59.293 41.667 0.00 0.00 45.56 4.41
198 199 5.255710 TGAACATCTAAGTAGCTCTCAGC 57.744 43.478 0.00 0.00 42.84 4.26
199 200 7.978414 TCATTTGAACATCTAAGTAGCTCTCAG 59.022 37.037 0.00 0.00 0.00 3.35
200 201 7.761704 GTCATTTGAACATCTAAGTAGCTCTCA 59.238 37.037 0.00 0.00 0.00 3.27
201 202 7.978975 AGTCATTTGAACATCTAAGTAGCTCTC 59.021 37.037 0.00 0.00 0.00 3.20
202 203 7.846066 AGTCATTTGAACATCTAAGTAGCTCT 58.154 34.615 0.00 0.00 0.00 4.09
203 204 8.386606 CAAGTCATTTGAACATCTAAGTAGCTC 58.613 37.037 0.00 0.00 39.21 4.09
204 205 8.097038 TCAAGTCATTTGAACATCTAAGTAGCT 58.903 33.333 0.00 0.00 42.69 3.32
205 206 8.256611 TCAAGTCATTTGAACATCTAAGTAGC 57.743 34.615 0.00 0.00 42.69 3.58
218 219 6.148948 CCGCTACAAATTTCAAGTCATTTGA 58.851 36.000 10.76 0.00 43.92 2.69
219 220 5.345741 CCCGCTACAAATTTCAAGTCATTTG 59.654 40.000 3.60 3.60 43.31 2.32
220 221 5.469479 CCCGCTACAAATTTCAAGTCATTT 58.531 37.500 0.00 0.00 0.00 2.32
221 222 4.618227 GCCCGCTACAAATTTCAAGTCATT 60.618 41.667 0.00 0.00 0.00 2.57
222 223 3.119495 GCCCGCTACAAATTTCAAGTCAT 60.119 43.478 0.00 0.00 0.00 3.06
223 224 2.227865 GCCCGCTACAAATTTCAAGTCA 59.772 45.455 0.00 0.00 0.00 3.41
224 225 2.415491 GGCCCGCTACAAATTTCAAGTC 60.415 50.000 0.00 0.00 0.00 3.01
225 226 1.544246 GGCCCGCTACAAATTTCAAGT 59.456 47.619 0.00 0.00 0.00 3.16
226 227 1.818674 AGGCCCGCTACAAATTTCAAG 59.181 47.619 0.00 0.00 0.00 3.02
227 228 1.816224 GAGGCCCGCTACAAATTTCAA 59.184 47.619 0.00 0.00 0.00 2.69
228 229 1.271652 TGAGGCCCGCTACAAATTTCA 60.272 47.619 0.00 0.00 0.00 2.69
229 230 1.132453 GTGAGGCCCGCTACAAATTTC 59.868 52.381 0.00 0.00 0.00 2.17
230 231 1.173913 GTGAGGCCCGCTACAAATTT 58.826 50.000 0.00 0.00 0.00 1.82
231 232 1.024579 CGTGAGGCCCGCTACAAATT 61.025 55.000 0.00 0.00 0.00 1.82
232 233 1.449601 CGTGAGGCCCGCTACAAAT 60.450 57.895 0.00 0.00 0.00 2.32
233 234 2.047655 CGTGAGGCCCGCTACAAA 60.048 61.111 0.00 0.00 0.00 2.83
240 241 1.656818 AATTTGATGCGTGAGGCCCG 61.657 55.000 0.00 0.00 42.61 6.13
241 242 0.179129 CAATTTGATGCGTGAGGCCC 60.179 55.000 0.00 0.00 42.61 5.80
242 243 0.527565 ACAATTTGATGCGTGAGGCC 59.472 50.000 2.79 0.00 42.61 5.19
243 244 1.470098 AGACAATTTGATGCGTGAGGC 59.530 47.619 2.79 0.00 43.96 4.70
244 245 2.743664 TCAGACAATTTGATGCGTGAGG 59.256 45.455 2.79 0.00 0.00 3.86
245 246 4.083643 AGTTCAGACAATTTGATGCGTGAG 60.084 41.667 2.79 0.00 0.00 3.51
246 247 3.814842 AGTTCAGACAATTTGATGCGTGA 59.185 39.130 2.79 0.00 0.00 4.35
247 248 4.151258 AGTTCAGACAATTTGATGCGTG 57.849 40.909 2.79 0.00 0.00 5.34
248 249 4.836125 AAGTTCAGACAATTTGATGCGT 57.164 36.364 2.79 0.00 0.00 5.24
249 250 6.198778 TCAAAAAGTTCAGACAATTTGATGCG 59.801 34.615 2.79 0.00 37.53 4.73
250 251 7.467557 TCAAAAAGTTCAGACAATTTGATGC 57.532 32.000 2.79 0.00 37.53 3.91
253 254 8.806634 CGAAATCAAAAAGTTCAGACAATTTGA 58.193 29.630 2.79 10.19 41.99 2.69
254 255 8.594687 ACGAAATCAAAAAGTTCAGACAATTTG 58.405 29.630 0.00 0.00 36.10 2.32
255 256 8.702163 ACGAAATCAAAAAGTTCAGACAATTT 57.298 26.923 0.00 0.00 0.00 1.82
256 257 8.702163 AACGAAATCAAAAAGTTCAGACAATT 57.298 26.923 0.00 0.00 0.00 2.32
257 258 8.702163 AAACGAAATCAAAAAGTTCAGACAAT 57.298 26.923 0.00 0.00 0.00 2.71
258 259 8.431593 CAAAACGAAATCAAAAAGTTCAGACAA 58.568 29.630 0.00 0.00 0.00 3.18
259 260 7.810282 TCAAAACGAAATCAAAAAGTTCAGACA 59.190 29.630 0.00 0.00 0.00 3.41
260 261 8.168681 TCAAAACGAAATCAAAAAGTTCAGAC 57.831 30.769 0.00 0.00 0.00 3.51
261 262 8.749841 TTCAAAACGAAATCAAAAAGTTCAGA 57.250 26.923 0.00 0.00 0.00 3.27
298 299 3.637229 TCATTTGCACCCGGTTAGAAAAA 59.363 39.130 0.00 0.00 0.00 1.94
299 300 3.223435 TCATTTGCACCCGGTTAGAAAA 58.777 40.909 0.00 0.00 0.00 2.29
300 301 2.817258 CTCATTTGCACCCGGTTAGAAA 59.183 45.455 0.00 0.00 0.00 2.52
301 302 2.432444 CTCATTTGCACCCGGTTAGAA 58.568 47.619 0.00 0.00 0.00 2.10
302 303 1.948611 GCTCATTTGCACCCGGTTAGA 60.949 52.381 0.00 0.00 0.00 2.10
303 304 0.451783 GCTCATTTGCACCCGGTTAG 59.548 55.000 0.00 0.00 0.00 2.34
304 305 0.963355 GGCTCATTTGCACCCGGTTA 60.963 55.000 0.00 0.00 34.04 2.85
305 306 2.275380 GGCTCATTTGCACCCGGTT 61.275 57.895 0.00 0.00 34.04 4.44
306 307 2.676471 GGCTCATTTGCACCCGGT 60.676 61.111 0.00 0.00 34.04 5.28
307 308 2.361610 AGGCTCATTTGCACCCGG 60.362 61.111 0.00 0.00 34.04 5.73
308 309 1.651240 CTCAGGCTCATTTGCACCCG 61.651 60.000 0.00 0.00 34.04 5.28
309 310 1.941999 GCTCAGGCTCATTTGCACCC 61.942 60.000 0.00 0.00 35.22 4.61
310 311 1.246056 TGCTCAGGCTCATTTGCACC 61.246 55.000 0.00 0.00 39.59 5.01
311 312 0.109412 GTGCTCAGGCTCATTTGCAC 60.109 55.000 9.78 9.78 42.69 4.57
312 313 1.246056 GGTGCTCAGGCTCATTTGCA 61.246 55.000 0.00 0.00 39.59 4.08
313 314 1.246056 TGGTGCTCAGGCTCATTTGC 61.246 55.000 0.00 0.00 39.59 3.68
314 315 1.250328 TTGGTGCTCAGGCTCATTTG 58.750 50.000 0.00 0.00 39.59 2.32
315 316 1.999648 TTTGGTGCTCAGGCTCATTT 58.000 45.000 0.00 0.00 39.59 2.32
316 317 1.615392 GTTTTGGTGCTCAGGCTCATT 59.385 47.619 0.00 0.00 39.59 2.57
317 318 1.251251 GTTTTGGTGCTCAGGCTCAT 58.749 50.000 0.00 0.00 39.59 2.90
318 319 1.165907 CGTTTTGGTGCTCAGGCTCA 61.166 55.000 0.00 0.00 39.59 4.26
319 320 1.576421 CGTTTTGGTGCTCAGGCTC 59.424 57.895 0.00 0.00 39.59 4.70
320 321 2.555547 GCGTTTTGGTGCTCAGGCT 61.556 57.895 0.00 0.00 39.59 4.58
321 322 2.050077 GCGTTTTGGTGCTCAGGC 60.050 61.111 0.00 0.00 39.26 4.85
322 323 2.644992 GGCGTTTTGGTGCTCAGG 59.355 61.111 0.00 0.00 0.00 3.86
323 324 0.605319 TAGGGCGTTTTGGTGCTCAG 60.605 55.000 0.00 0.00 32.70 3.35
324 325 0.887387 GTAGGGCGTTTTGGTGCTCA 60.887 55.000 0.00 0.00 32.70 4.26
325 326 0.605589 AGTAGGGCGTTTTGGTGCTC 60.606 55.000 0.00 0.00 0.00 4.26
326 327 0.605589 GAGTAGGGCGTTTTGGTGCT 60.606 55.000 0.00 0.00 0.00 4.40
327 328 0.887387 TGAGTAGGGCGTTTTGGTGC 60.887 55.000 0.00 0.00 0.00 5.01
328 329 0.872388 GTGAGTAGGGCGTTTTGGTG 59.128 55.000 0.00 0.00 0.00 4.17
329 330 0.470766 TGTGAGTAGGGCGTTTTGGT 59.529 50.000 0.00 0.00 0.00 3.67
330 331 0.872388 GTGTGAGTAGGGCGTTTTGG 59.128 55.000 0.00 0.00 0.00 3.28
331 332 0.511221 CGTGTGAGTAGGGCGTTTTG 59.489 55.000 0.00 0.00 0.00 2.44
332 333 0.105408 ACGTGTGAGTAGGGCGTTTT 59.895 50.000 0.00 0.00 31.37 2.43
333 334 0.599204 CACGTGTGAGTAGGGCGTTT 60.599 55.000 7.58 0.00 33.28 3.60
334 335 1.006571 CACGTGTGAGTAGGGCGTT 60.007 57.895 7.58 0.00 33.28 4.84
335 336 2.649034 CACGTGTGAGTAGGGCGT 59.351 61.111 7.58 0.00 36.13 5.68
336 337 2.809601 GCACGTGTGAGTAGGGCG 60.810 66.667 18.38 0.00 0.00 6.13
337 338 0.673644 ATTGCACGTGTGAGTAGGGC 60.674 55.000 18.38 0.00 0.00 5.19
338 339 1.808411 AATTGCACGTGTGAGTAGGG 58.192 50.000 18.38 0.00 0.00 3.53
339 340 2.548057 ACAAATTGCACGTGTGAGTAGG 59.452 45.455 18.38 4.64 0.00 3.18
340 341 3.878086 ACAAATTGCACGTGTGAGTAG 57.122 42.857 18.38 6.51 0.00 2.57
341 342 4.624336 AAACAAATTGCACGTGTGAGTA 57.376 36.364 18.38 0.00 0.00 2.59
342 343 3.502191 AAACAAATTGCACGTGTGAGT 57.498 38.095 18.38 2.24 0.00 3.41
343 344 4.104776 AGAAAACAAATTGCACGTGTGAG 58.895 39.130 18.38 4.38 0.00 3.51
344 345 4.101942 GAGAAAACAAATTGCACGTGTGA 58.898 39.130 18.38 6.43 0.00 3.58
351 352 5.833131 AGGGAGTAAGAGAAAACAAATTGCA 59.167 36.000 0.00 0.00 0.00 4.08
356 357 5.133830 AGGGAAGGGAGTAAGAGAAAACAAA 59.866 40.000 0.00 0.00 0.00 2.83
368 369 3.675348 TCGACAATAGGGAAGGGAGTA 57.325 47.619 0.00 0.00 0.00 2.59
377 378 3.256136 GGAGGTGAGTATCGACAATAGGG 59.744 52.174 0.00 0.00 38.61 3.53
401 410 2.168728 GAGACGGGGAAGCAATAGACTT 59.831 50.000 0.00 0.00 0.00 3.01
419 428 0.036388 GCAAAGATGGGTGGTCGAGA 60.036 55.000 0.00 0.00 0.00 4.04
435 445 1.669440 GAGTAGTGTGGTCCCGCAA 59.331 57.895 0.22 0.00 38.24 4.85
538 551 0.179081 GACTGATAACGAGGGGTGGC 60.179 60.000 0.00 0.00 0.00 5.01
548 561 2.376109 TGGGGACTCTCGACTGATAAC 58.624 52.381 0.00 0.00 0.00 1.89
613 627 4.864806 TCTGCTTCGAGTTGATATGTTGAC 59.135 41.667 0.00 0.00 0.00 3.18
650 664 9.805966 ACATGTAATATTCATTTATACGCAACG 57.194 29.630 0.00 0.00 0.00 4.10
697 711 7.115378 GCCACAATGAATTCTTCTTAAACAGTG 59.885 37.037 7.05 0.00 0.00 3.66
701 715 7.147976 AGTGCCACAATGAATTCTTCTTAAAC 58.852 34.615 7.05 0.00 0.00 2.01
812 4347 7.141363 AGATTTCTATTTGAATATTGGCACGC 58.859 34.615 0.00 0.00 34.24 5.34
1284 4826 1.087501 CTCTTAGCCCTGCGTTTTCC 58.912 55.000 0.00 0.00 0.00 3.13
1631 5176 1.187087 GAACCCCACAGATCTCTCGT 58.813 55.000 0.00 0.00 0.00 4.18
1675 5220 3.751479 TTTCTGCTAGAGTGACTGCAA 57.249 42.857 0.00 0.00 34.33 4.08
1738 5283 4.381398 GCACTGATACACACACAGAGAGAT 60.381 45.833 0.00 0.00 35.85 2.75
1872 5417 3.452755 AATATCGATCTGGTTGCGTGA 57.547 42.857 0.00 0.00 0.00 4.35
1990 5535 8.131100 AGTGCTTTTTAATCATATCCATTCACG 58.869 33.333 0.00 0.00 0.00 4.35
2021 5566 9.775854 AATATCTTAGACAATCAGTGAAGATGG 57.224 33.333 10.25 0.00 38.77 3.51
2412 5967 6.817184 TGGAAACTATCAACTCTATAGCCAC 58.183 40.000 0.00 0.00 31.31 5.01
2464 6019 3.056952 CATGAGTGCTGCGGTAAATTC 57.943 47.619 0.00 0.00 0.00 2.17
2547 6102 3.372206 GCCATGACTTGACTGATACACAC 59.628 47.826 0.00 0.00 0.00 3.82
2685 6240 1.879380 TCAAATTTGGGAGCACTCACG 59.121 47.619 17.90 0.00 35.27 4.35
2691 6246 3.258872 CCATGAGTTCAAATTTGGGAGCA 59.741 43.478 17.90 11.61 0.00 4.26
3020 6575 1.044611 GAGTGATGAGGGCTCCTACC 58.955 60.000 0.00 0.00 31.76 3.18
3190 6746 3.117776 TGCTCCATCATAATCTTGGTGCT 60.118 43.478 14.13 0.00 45.61 4.40
3274 6831 3.537580 ACAAGGTAACGAAGCAAGTTCA 58.462 40.909 0.00 0.00 46.39 3.18
3429 6986 0.663153 AACTTCTTCCACAGCAACGC 59.337 50.000 0.00 0.00 0.00 4.84
3497 7054 2.834549 AGAGTGCACAACATAGGCTACT 59.165 45.455 21.04 0.00 0.00 2.57
3500 7057 1.349026 ACAGAGTGCACAACATAGGCT 59.651 47.619 21.04 0.00 0.00 4.58
3540 7097 1.890876 ATAGTCAACGCAAGGCAACA 58.109 45.000 0.00 0.00 46.39 3.33
3647 7204 4.251268 ACTGGCCAGTTAATCTAACGAAC 58.749 43.478 33.20 0.00 43.29 3.95
3672 7229 7.297936 TCAACTGTCAGAGTATCAGGTAAAA 57.702 36.000 6.91 0.00 37.82 1.52
3820 7379 7.387948 TGAGCTAAAAGAGGAATCAAACTACAC 59.612 37.037 0.00 0.00 0.00 2.90
3833 7392 5.964958 TCCACAAAATGAGCTAAAAGAGG 57.035 39.130 0.00 0.00 0.00 3.69
3889 7448 6.787085 AATAAGCTATGTTAGTGCGGATTC 57.213 37.500 0.00 0.00 0.00 2.52
4585 8158 7.211966 CAAGAATGGAGTCAACTCATCTTTT 57.788 36.000 11.99 0.00 44.60 2.27
4776 8349 1.447314 GTCCCGAACACGCCCTAAG 60.447 63.158 0.00 0.00 0.00 2.18
4777 8350 2.658422 GTCCCGAACACGCCCTAA 59.342 61.111 0.00 0.00 0.00 2.69
4778 8351 3.384532 GGTCCCGAACACGCCCTA 61.385 66.667 0.00 0.00 0.00 3.53
4781 8354 4.754667 GAGGGTCCCGAACACGCC 62.755 72.222 0.99 0.00 35.94 5.68
4782 8355 4.754667 GGAGGGTCCCGAACACGC 62.755 72.222 0.99 0.00 35.94 5.34
4783 8356 3.296709 CTGGAGGGTCCCGAACACG 62.297 68.421 0.99 0.00 35.94 4.49
4784 8357 2.663196 CTGGAGGGTCCCGAACAC 59.337 66.667 0.99 0.00 35.03 3.32
4785 8358 3.319198 GCTGGAGGGTCCCGAACA 61.319 66.667 0.99 2.10 35.03 3.18
4786 8359 2.125766 AAAGCTGGAGGGTCCCGAAC 62.126 60.000 0.99 0.00 35.03 3.95
4787 8360 1.846124 AAAGCTGGAGGGTCCCGAA 60.846 57.895 0.99 0.00 35.03 4.30
4788 8361 2.203938 AAAGCTGGAGGGTCCCGA 60.204 61.111 0.99 0.00 35.03 5.14
4789 8362 2.045926 CAAAGCTGGAGGGTCCCG 60.046 66.667 0.99 0.00 35.03 5.14
4790 8363 1.002011 GACAAAGCTGGAGGGTCCC 60.002 63.158 0.00 0.00 35.03 4.46
4791 8364 0.322008 CAGACAAAGCTGGAGGGTCC 60.322 60.000 0.00 0.00 36.96 4.46
4792 8365 0.398318 ACAGACAAAGCTGGAGGGTC 59.602 55.000 0.00 0.00 40.20 4.46
4793 8366 0.109342 CACAGACAAAGCTGGAGGGT 59.891 55.000 0.00 0.00 40.20 4.34
4794 8367 0.397941 TCACAGACAAAGCTGGAGGG 59.602 55.000 0.00 0.00 40.20 4.30
4795 8368 2.082231 CATCACAGACAAAGCTGGAGG 58.918 52.381 0.00 0.00 40.20 4.30
4796 8369 2.082231 CCATCACAGACAAAGCTGGAG 58.918 52.381 0.00 0.00 40.20 3.86
4797 8370 1.699083 TCCATCACAGACAAAGCTGGA 59.301 47.619 0.00 0.00 40.20 3.86
4798 8371 2.189594 TCCATCACAGACAAAGCTGG 57.810 50.000 0.00 0.00 40.20 4.85
4799 8372 2.095364 GCTTCCATCACAGACAAAGCTG 60.095 50.000 0.00 0.00 41.63 4.24
4800 8373 2.157738 GCTTCCATCACAGACAAAGCT 58.842 47.619 0.00 0.00 36.92 3.74
4801 8374 2.095364 CAGCTTCCATCACAGACAAAGC 60.095 50.000 0.00 0.00 39.44 3.51
4802 8375 2.486982 CCAGCTTCCATCACAGACAAAG 59.513 50.000 0.00 0.00 0.00 2.77
4803 8376 2.507484 CCAGCTTCCATCACAGACAAA 58.493 47.619 0.00 0.00 0.00 2.83
4804 8377 1.883638 GCCAGCTTCCATCACAGACAA 60.884 52.381 0.00 0.00 0.00 3.18
4805 8378 0.321919 GCCAGCTTCCATCACAGACA 60.322 55.000 0.00 0.00 0.00 3.41
4806 8379 0.035630 AGCCAGCTTCCATCACAGAC 60.036 55.000 0.00 0.00 0.00 3.51
4807 8380 0.035725 CAGCCAGCTTCCATCACAGA 60.036 55.000 0.00 0.00 0.00 3.41
4808 8381 0.322277 ACAGCCAGCTTCCATCACAG 60.322 55.000 0.00 0.00 0.00 3.66
4809 8382 0.111061 AACAGCCAGCTTCCATCACA 59.889 50.000 0.00 0.00 0.00 3.58
4810 8383 0.524862 CAACAGCCAGCTTCCATCAC 59.475 55.000 0.00 0.00 0.00 3.06
4811 8384 0.609957 CCAACAGCCAGCTTCCATCA 60.610 55.000 0.00 0.00 0.00 3.07
4812 8385 1.941999 GCCAACAGCCAGCTTCCATC 61.942 60.000 0.00 0.00 34.35 3.51
4813 8386 1.980772 GCCAACAGCCAGCTTCCAT 60.981 57.895 0.00 0.00 34.35 3.41
4814 8387 2.598394 GCCAACAGCCAGCTTCCA 60.598 61.111 0.00 0.00 34.35 3.53
4815 8388 2.598394 TGCCAACAGCCAGCTTCC 60.598 61.111 0.00 0.00 42.71 3.46
4816 8389 2.633509 CCTGCCAACAGCCAGCTTC 61.634 63.158 0.00 0.00 43.02 3.86
4817 8390 2.599578 CCTGCCAACAGCCAGCTT 60.600 61.111 0.00 0.00 43.02 3.74
4836 8409 3.682292 AATCCTCAACTCCGCCGCC 62.682 63.158 0.00 0.00 0.00 6.13
4837 8410 1.305930 AAAATCCTCAACTCCGCCGC 61.306 55.000 0.00 0.00 0.00 6.53
4838 8411 0.447801 CAAAATCCTCAACTCCGCCG 59.552 55.000 0.00 0.00 0.00 6.46
4839 8412 1.200020 CACAAAATCCTCAACTCCGCC 59.800 52.381 0.00 0.00 0.00 6.13
4840 8413 1.200020 CCACAAAATCCTCAACTCCGC 59.800 52.381 0.00 0.00 0.00 5.54
4841 8414 1.200020 GCCACAAAATCCTCAACTCCG 59.800 52.381 0.00 0.00 0.00 4.63
4842 8415 2.229784 CAGCCACAAAATCCTCAACTCC 59.770 50.000 0.00 0.00 0.00 3.85
4843 8416 2.229784 CCAGCCACAAAATCCTCAACTC 59.770 50.000 0.00 0.00 0.00 3.01
4844 8417 2.242043 CCAGCCACAAAATCCTCAACT 58.758 47.619 0.00 0.00 0.00 3.16
4845 8418 1.273327 CCCAGCCACAAAATCCTCAAC 59.727 52.381 0.00 0.00 0.00 3.18
4846 8419 1.631405 CCCAGCCACAAAATCCTCAA 58.369 50.000 0.00 0.00 0.00 3.02
4847 8420 0.251742 CCCCAGCCACAAAATCCTCA 60.252 55.000 0.00 0.00 0.00 3.86
4848 8421 0.039618 TCCCCAGCCACAAAATCCTC 59.960 55.000 0.00 0.00 0.00 3.71
4849 8422 0.040204 CTCCCCAGCCACAAAATCCT 59.960 55.000 0.00 0.00 0.00 3.24
4850 8423 0.972471 CCTCCCCAGCCACAAAATCC 60.972 60.000 0.00 0.00 0.00 3.01
4851 8424 0.972471 CCCTCCCCAGCCACAAAATC 60.972 60.000 0.00 0.00 0.00 2.17
4852 8425 1.079073 CCCTCCCCAGCCACAAAAT 59.921 57.895 0.00 0.00 0.00 1.82
4853 8426 2.525592 CCCTCCCCAGCCACAAAA 59.474 61.111 0.00 0.00 0.00 2.44
4854 8427 4.299796 GCCCTCCCCAGCCACAAA 62.300 66.667 0.00 0.00 0.00 2.83
4870 8443 3.305177 TAAGGGCGTGTTCGGGAGC 62.305 63.158 0.00 0.00 37.56 4.70
4871 8444 1.153628 CTAAGGGCGTGTTCGGGAG 60.154 63.158 0.00 0.00 37.56 4.30
4872 8445 0.611618 TACTAAGGGCGTGTTCGGGA 60.612 55.000 0.00 0.00 37.56 5.14
4873 8446 0.459063 GTACTAAGGGCGTGTTCGGG 60.459 60.000 0.00 0.00 37.56 5.14
4874 8447 0.244450 TGTACTAAGGGCGTGTTCGG 59.756 55.000 0.00 0.00 37.56 4.30
4875 8448 2.288961 ATGTACTAAGGGCGTGTTCG 57.711 50.000 0.00 0.00 40.37 3.95
4876 8449 4.092968 CAGAAATGTACTAAGGGCGTGTTC 59.907 45.833 0.00 0.00 0.00 3.18
4877 8450 4.000988 CAGAAATGTACTAAGGGCGTGTT 58.999 43.478 0.00 0.00 0.00 3.32
4878 8451 3.259876 TCAGAAATGTACTAAGGGCGTGT 59.740 43.478 0.00 0.00 0.00 4.49
4879 8452 3.857052 TCAGAAATGTACTAAGGGCGTG 58.143 45.455 0.00 0.00 0.00 5.34
4880 8453 4.546829 TTCAGAAATGTACTAAGGGCGT 57.453 40.909 0.00 0.00 0.00 5.68
4881 8454 5.817816 AGAATTCAGAAATGTACTAAGGGCG 59.182 40.000 8.44 0.00 0.00 6.13
4882 8455 6.823689 TCAGAATTCAGAAATGTACTAAGGGC 59.176 38.462 8.44 0.00 0.00 5.19
4883 8456 7.281100 GGTCAGAATTCAGAAATGTACTAAGGG 59.719 40.741 8.44 0.00 0.00 3.95
4884 8457 7.010552 CGGTCAGAATTCAGAAATGTACTAAGG 59.989 40.741 8.44 0.00 0.00 2.69
5060 8633 2.575921 TGACTTCCATGGGATCTCCT 57.424 50.000 13.02 0.00 36.20 3.69
5152 8725 2.555732 TTCCTGATTACTACCGGGGT 57.444 50.000 6.32 7.02 0.00 4.95
5156 8729 7.464977 CGGTTAACAATTTCCTGATTACTACCG 60.465 40.741 8.10 0.00 0.00 4.02
5207 8780 2.898729 AGACAGGATATGCTGGTTCG 57.101 50.000 25.75 3.25 0.00 3.95
5290 8863 4.023980 AGGATCGTCTTCAGTAATCACCA 58.976 43.478 0.00 0.00 0.00 4.17
5292 8865 3.799420 GCAGGATCGTCTTCAGTAATCAC 59.201 47.826 0.00 0.00 0.00 3.06
5395 8968 1.067495 CCTCCTGTCTGACCGAAGAAC 60.067 57.143 5.17 0.00 0.00 3.01
5564 9137 0.830648 TATGTACACCAGAGGCAGCC 59.169 55.000 1.84 1.84 0.00 4.85
5660 9233 9.841295 ACTCTAAATAGAACTACTACTGGAGAG 57.159 37.037 0.00 0.00 35.48 3.20
5678 9251 5.163652 GGCGCAAATGTTAGGAACTCTAAAT 60.164 40.000 10.83 0.00 39.43 1.40
5689 9262 2.044888 AACAACGGCGCAAATGTTAG 57.955 45.000 18.41 10.28 34.45 2.34
5876 9486 8.629158 ACAAAGTATAGTGCAAAGAACAATTCA 58.371 29.630 0.00 0.00 0.00 2.57
5984 9634 3.325870 CAGTAGAAAACACTGCGATGGA 58.674 45.455 0.00 0.00 37.22 3.41
5985 9635 3.729526 CAGTAGAAAACACTGCGATGG 57.270 47.619 0.00 0.00 37.22 3.51
6090 9741 9.378504 TGGTGGCCAGATAATAATAATTCAATT 57.621 29.630 5.11 0.00 0.00 2.32
6143 10136 4.941873 ACAACCTCGATTATGGGTTTCTTC 59.058 41.667 3.43 0.00 40.83 2.87
6144 10137 4.918588 ACAACCTCGATTATGGGTTTCTT 58.081 39.130 3.43 0.00 40.83 2.52
6169 10162 0.729116 GTGATGACGATGGCACTTGG 59.271 55.000 0.00 0.00 0.00 3.61
6211 10205 5.390885 CGTTGATGAAGTCGATGGTGAAATT 60.391 40.000 0.00 0.00 0.00 1.82
6213 10207 3.431912 CGTTGATGAAGTCGATGGTGAAA 59.568 43.478 0.00 0.00 0.00 2.69
6216 10210 2.606108 TCGTTGATGAAGTCGATGGTG 58.394 47.619 0.00 0.00 0.00 4.17
6253 10247 1.238439 CTGACATTGGTTCTGGCGTT 58.762 50.000 0.00 0.00 0.00 4.84
6271 10265 0.035317 TCGACTGTTTGGCATGAGCT 59.965 50.000 0.00 0.00 41.70 4.09
6274 10268 0.107643 TGGTCGACTGTTTGGCATGA 59.892 50.000 16.46 0.00 0.00 3.07
6286 10280 1.952635 GTCAACACGGGTGGTCGAC 60.953 63.158 7.13 7.13 34.19 4.20
6288 10282 3.033764 CGTCAACACGGGTGGTCG 61.034 66.667 0.00 0.00 42.73 4.79
6290 10284 4.922026 GGCGTCAACACGGGTGGT 62.922 66.667 0.00 0.00 46.80 4.16
6300 10294 2.619177 GTCAGAGCTATCTAGGCGTCAA 59.381 50.000 0.00 0.00 33.22 3.18
6308 10302 4.576873 CGGTCTTCAAGTCAGAGCTATCTA 59.423 45.833 0.00 0.00 36.75 1.98
6312 10306 1.202582 GCGGTCTTCAAGTCAGAGCTA 59.797 52.381 0.00 0.00 36.75 3.32
6335 10329 3.944015 GCTCTGCATATTTCTCCTGTGTT 59.056 43.478 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.