Multiple sequence alignment - TraesCS5D01G353200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G353200 chr5D 100.000 3080 0 0 1 3080 435280264 435277185 0.000000e+00 5688.0
1 TraesCS5D01G353200 chr5A 95.466 2007 55 9 833 2829 549220433 549218453 0.000000e+00 3169.0
2 TraesCS5D01G353200 chr5A 94.118 238 10 2 1 234 549221135 549220898 2.920000e-95 359.0
3 TraesCS5D01G353200 chr5A 86.928 153 7 3 2928 3080 549218451 549218312 3.180000e-35 159.0
4 TraesCS5D01G353200 chr5A 82.486 177 14 3 237 397 549220816 549220641 4.140000e-29 139.0
5 TraesCS5D01G353200 chr5B 95.060 1984 64 11 719 2691 528591561 528589601 0.000000e+00 3090.0
6 TraesCS5D01G353200 chr5B 92.982 114 7 1 1 114 528668843 528668731 6.830000e-37 165.0
7 TraesCS5D01G353200 chr6A 95.976 1342 45 2 1214 2549 573138745 573137407 0.000000e+00 2170.0
8 TraesCS5D01G353200 chr6A 94.450 937 42 3 1620 2549 615024985 615025918 0.000000e+00 1434.0
9 TraesCS5D01G353200 chr6A 94.133 375 22 0 1214 1588 615024613 615024987 3.450000e-159 571.0
10 TraesCS5D01G353200 chr6A 85.714 56 4 2 436 487 597951436 597951491 4.290000e-04 56.5
11 TraesCS5D01G353200 chr2A 95.678 1342 49 4 1214 2549 561008636 561009974 0.000000e+00 2148.0
12 TraesCS5D01G353200 chr3A 95.011 1343 57 3 1214 2549 52208146 52206807 0.000000e+00 2100.0
13 TraesCS5D01G353200 chr3A 90.909 55 3 1 437 489 57564545 57564599 4.260000e-09 73.1
14 TraesCS5D01G353200 chr4A 87.931 58 6 1 431 487 707291503 707291446 1.980000e-07 67.6
15 TraesCS5D01G353200 chr3B 89.583 48 5 0 432 479 780332090 780332137 9.220000e-06 62.1
16 TraesCS5D01G353200 chr3B 100.000 31 0 0 432 462 780307667 780307697 1.190000e-04 58.4
17 TraesCS5D01G353200 chr2B 86.667 60 3 5 432 487 742420791 742420733 9.220000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G353200 chr5D 435277185 435280264 3079 True 5688.0 5688 100.0000 1 3080 1 chr5D.!!$R1 3079
1 TraesCS5D01G353200 chr5A 549218312 549221135 2823 True 956.5 3169 89.7495 1 3080 4 chr5A.!!$R1 3079
2 TraesCS5D01G353200 chr5B 528589601 528591561 1960 True 3090.0 3090 95.0600 719 2691 1 chr5B.!!$R1 1972
3 TraesCS5D01G353200 chr6A 573137407 573138745 1338 True 2170.0 2170 95.9760 1214 2549 1 chr6A.!!$R1 1335
4 TraesCS5D01G353200 chr6A 615024613 615025918 1305 False 1002.5 1434 94.2915 1214 2549 2 chr6A.!!$F2 1335
5 TraesCS5D01G353200 chr2A 561008636 561009974 1338 False 2148.0 2148 95.6780 1214 2549 1 chr2A.!!$F1 1335
6 TraesCS5D01G353200 chr3A 52206807 52208146 1339 True 2100.0 2100 95.0110 1214 2549 1 chr3A.!!$R1 1335

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 570 0.034476 TGCAGAGGCCGATGATCATC 59.966 55.0 23.42 23.42 40.13 2.92 F
685 784 0.249784 CTGTGAGGAGATGGCGGATG 60.250 60.0 0.00 0.00 0.00 3.51 F
700 799 0.320247 GGATGCGAGGATGCTACCAG 60.320 60.0 0.00 0.00 35.36 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 1882 1.672356 CTCCTTTGTGACCTGCCGG 60.672 63.158 0.00 0.0 0.00 6.13 R
1772 1947 2.026822 ACACAGCTAGGACCTGAATTGG 60.027 50.000 3.53 0.0 34.47 3.16 R
2489 2672 3.767902 TTCCCCAAATCAAGGCAAAAG 57.232 42.857 0.00 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 5.050490 CCACCTATCATGAAAAGTAGTCCG 58.950 45.833 0.00 0.00 0.00 4.79
88 89 4.401022 TGATCTCCTCAGCACAAACATTT 58.599 39.130 0.00 0.00 0.00 2.32
126 127 8.320338 ACATATTTAGTAAGTAGCCTGGAACT 57.680 34.615 0.00 0.00 0.00 3.01
138 139 3.454082 AGCCTGGAACTAGAAATGAGGAG 59.546 47.826 0.00 0.00 0.00 3.69
209 214 8.934697 AGGATCTTATTAGCACCATGTAGTTTA 58.065 33.333 0.00 0.00 0.00 2.01
210 215 8.989980 GGATCTTATTAGCACCATGTAGTTTAC 58.010 37.037 0.00 0.00 0.00 2.01
220 225 6.682113 GCACCATGTAGTTTACGGATAAGAGA 60.682 42.308 0.00 0.00 0.00 3.10
225 230 9.529325 CATGTAGTTTACGGATAAGAGAAATGA 57.471 33.333 0.00 0.00 0.00 2.57
234 239 8.839310 ACGGATAAGAGAAATGATTCCATAAG 57.161 34.615 0.00 0.00 36.12 1.73
235 240 7.880195 ACGGATAAGAGAAATGATTCCATAAGG 59.120 37.037 0.00 0.00 36.12 2.69
275 363 3.700538 TCCATCAGGGATCCACAAAAAG 58.299 45.455 15.23 0.00 42.15 2.27
278 366 4.527816 CCATCAGGGATCCACAAAAAGAAA 59.472 41.667 15.23 0.00 40.01 2.52
280 368 6.296030 CCATCAGGGATCCACAAAAAGAAAAT 60.296 38.462 15.23 0.00 40.01 1.82
317 405 5.874895 TGAGAGAAAGTTCATCTGCAATG 57.125 39.130 0.00 0.00 0.00 2.82
365 464 8.257830 ACTAAAAGTTAGCATCAAAGCTACTC 57.742 34.615 0.00 0.00 46.07 2.59
374 473 4.268884 GCATCAAAGCTACTCCTTTCTACG 59.731 45.833 0.00 0.00 32.97 3.51
383 482 2.910977 ACTCCTTTCTACGGGTCCAAAT 59.089 45.455 0.00 0.00 0.00 2.32
428 527 8.835467 TTTTATGTTTCATAAGAATACGCTGC 57.165 30.769 0.00 0.00 32.89 5.25
430 529 5.469373 TGTTTCATAAGAATACGCTGCTG 57.531 39.130 0.00 0.00 32.89 4.41
431 530 4.935205 TGTTTCATAAGAATACGCTGCTGT 59.065 37.500 0.00 0.00 32.89 4.40
432 531 5.163864 TGTTTCATAAGAATACGCTGCTGTG 60.164 40.000 2.21 2.21 32.89 3.66
433 532 3.457234 TCATAAGAATACGCTGCTGTGG 58.543 45.455 9.09 0.00 0.00 4.17
434 533 1.651987 TAAGAATACGCTGCTGTGGC 58.348 50.000 9.09 0.00 39.26 5.01
435 534 0.036010 AAGAATACGCTGCTGTGGCT 60.036 50.000 9.09 0.00 39.59 4.75
436 535 0.742281 AGAATACGCTGCTGTGGCTG 60.742 55.000 9.09 0.00 39.59 4.85
442 541 3.370231 CTGCTGTGGCTGCATGCA 61.370 61.111 21.29 21.29 45.15 3.96
443 542 2.678580 TGCTGTGGCTGCATGCAT 60.679 55.556 22.97 0.00 45.15 3.96
444 543 2.104331 GCTGTGGCTGCATGCATC 59.896 61.111 22.97 17.75 45.15 3.91
445 544 2.415608 GCTGTGGCTGCATGCATCT 61.416 57.895 22.97 0.00 45.15 2.90
447 546 1.725557 CTGTGGCTGCATGCATCTCC 61.726 60.000 22.97 21.43 45.15 3.71
449 548 2.124024 GGCTGCATGCATCTCCCA 60.124 61.111 22.97 0.00 45.15 4.37
450 549 1.755395 GGCTGCATGCATCTCCCAA 60.755 57.895 22.97 0.00 45.15 4.12
451 550 1.324740 GGCTGCATGCATCTCCCAAA 61.325 55.000 22.97 0.00 45.15 3.28
452 551 0.750850 GCTGCATGCATCTCCCAAAT 59.249 50.000 22.97 0.00 42.31 2.32
459 558 1.030457 GCATCTCCCAAATGCAGAGG 58.970 55.000 3.35 0.00 46.93 3.69
462 561 2.045045 TCCCAAATGCAGAGGCCG 60.045 61.111 0.00 0.00 40.13 6.13
464 563 1.454479 CCCAAATGCAGAGGCCGAT 60.454 57.895 0.00 0.00 40.13 4.18
465 564 1.731433 CCCAAATGCAGAGGCCGATG 61.731 60.000 0.00 0.55 40.13 3.84
466 565 0.749091 CCAAATGCAGAGGCCGATGA 60.749 55.000 13.76 0.65 40.13 2.92
467 566 1.315690 CAAATGCAGAGGCCGATGAT 58.684 50.000 13.76 2.77 40.13 2.45
468 567 1.266175 CAAATGCAGAGGCCGATGATC 59.734 52.381 13.76 0.00 40.13 2.92
469 568 0.471191 AATGCAGAGGCCGATGATCA 59.529 50.000 13.76 0.00 40.13 2.92
470 569 0.691332 ATGCAGAGGCCGATGATCAT 59.309 50.000 8.25 8.25 40.13 2.45
471 570 0.034476 TGCAGAGGCCGATGATCATC 59.966 55.000 23.42 23.42 40.13 2.92
472 571 0.673022 GCAGAGGCCGATGATCATCC 60.673 60.000 26.30 15.53 34.40 3.51
473 572 0.975135 CAGAGGCCGATGATCATCCT 59.025 55.000 26.30 19.67 34.40 3.24
475 574 1.622811 AGAGGCCGATGATCATCCTTC 59.377 52.381 26.30 19.00 34.40 3.46
476 575 1.622811 GAGGCCGATGATCATCCTTCT 59.377 52.381 26.30 20.09 34.40 2.85
477 576 2.038295 GAGGCCGATGATCATCCTTCTT 59.962 50.000 26.30 13.63 34.40 2.52
478 577 2.441001 AGGCCGATGATCATCCTTCTTT 59.559 45.455 26.30 7.91 34.40 2.52
479 578 3.648067 AGGCCGATGATCATCCTTCTTTA 59.352 43.478 26.30 0.00 34.40 1.85
480 579 4.103153 AGGCCGATGATCATCCTTCTTTAA 59.897 41.667 26.30 0.00 34.40 1.52
481 580 4.821805 GGCCGATGATCATCCTTCTTTAAA 59.178 41.667 26.30 0.00 34.40 1.52
482 581 5.299279 GGCCGATGATCATCCTTCTTTAAAA 59.701 40.000 26.30 0.00 34.40 1.52
483 582 6.183360 GGCCGATGATCATCCTTCTTTAAAAA 60.183 38.462 26.30 0.00 34.40 1.94
509 608 5.880901 AGGAATACACTTGTCTTCAACCAT 58.119 37.500 9.06 0.00 34.15 3.55
510 609 7.016153 AGGAATACACTTGTCTTCAACCATA 57.984 36.000 9.06 0.00 34.15 2.74
513 612 3.751518 ACACTTGTCTTCAACCATACCC 58.248 45.455 0.00 0.00 0.00 3.69
514 613 3.137544 ACACTTGTCTTCAACCATACCCA 59.862 43.478 0.00 0.00 0.00 4.51
515 614 3.753272 CACTTGTCTTCAACCATACCCAG 59.247 47.826 0.00 0.00 0.00 4.45
516 615 2.489938 TGTCTTCAACCATACCCAGC 57.510 50.000 0.00 0.00 0.00 4.85
517 616 1.985159 TGTCTTCAACCATACCCAGCT 59.015 47.619 0.00 0.00 0.00 4.24
518 617 2.027192 TGTCTTCAACCATACCCAGCTC 60.027 50.000 0.00 0.00 0.00 4.09
523 622 2.575735 TCAACCATACCCAGCTCAATCA 59.424 45.455 0.00 0.00 0.00 2.57
524 623 2.684881 CAACCATACCCAGCTCAATCAC 59.315 50.000 0.00 0.00 0.00 3.06
525 624 1.134401 ACCATACCCAGCTCAATCACG 60.134 52.381 0.00 0.00 0.00 4.35
526 625 1.586422 CATACCCAGCTCAATCACGG 58.414 55.000 0.00 0.00 0.00 4.94
528 627 1.855295 TACCCAGCTCAATCACGGTA 58.145 50.000 0.00 0.00 0.00 4.02
529 628 0.537188 ACCCAGCTCAATCACGGTAG 59.463 55.000 0.00 0.00 0.00 3.18
530 629 0.824109 CCCAGCTCAATCACGGTAGA 59.176 55.000 0.00 0.00 0.00 2.59
531 630 1.207089 CCCAGCTCAATCACGGTAGAA 59.793 52.381 0.00 0.00 0.00 2.10
532 631 2.544685 CCAGCTCAATCACGGTAGAAG 58.455 52.381 0.00 0.00 0.00 2.85
534 633 2.093973 CAGCTCAATCACGGTAGAAGGT 60.094 50.000 0.00 0.00 0.00 3.50
535 634 3.130516 CAGCTCAATCACGGTAGAAGGTA 59.869 47.826 0.00 0.00 0.00 3.08
537 636 3.380637 GCTCAATCACGGTAGAAGGTAGA 59.619 47.826 0.00 0.00 0.00 2.59
538 637 4.142227 GCTCAATCACGGTAGAAGGTAGAA 60.142 45.833 0.00 0.00 0.00 2.10
539 638 5.578005 TCAATCACGGTAGAAGGTAGAAG 57.422 43.478 0.00 0.00 0.00 2.85
540 639 5.258841 TCAATCACGGTAGAAGGTAGAAGA 58.741 41.667 0.00 0.00 0.00 2.87
541 640 5.125097 TCAATCACGGTAGAAGGTAGAAGAC 59.875 44.000 0.00 0.00 0.00 3.01
555 654 3.064900 AGAAGACCACAATGAGAAGCC 57.935 47.619 0.00 0.00 0.00 4.35
556 655 2.641815 AGAAGACCACAATGAGAAGCCT 59.358 45.455 0.00 0.00 0.00 4.58
557 656 2.777832 AGACCACAATGAGAAGCCTC 57.222 50.000 0.00 0.00 39.86 4.70
568 667 4.689612 TGAGAAGCCTCATATTGGTACC 57.310 45.455 4.43 4.43 44.01 3.34
569 668 3.069586 TGAGAAGCCTCATATTGGTACCG 59.930 47.826 7.57 0.00 44.01 4.02
570 669 3.305720 AGAAGCCTCATATTGGTACCGA 58.694 45.455 3.71 3.71 0.00 4.69
571 670 3.069729 AGAAGCCTCATATTGGTACCGAC 59.930 47.826 3.18 0.00 0.00 4.79
572 671 2.679082 AGCCTCATATTGGTACCGACT 58.321 47.619 3.18 0.00 0.00 4.18
573 672 2.628657 AGCCTCATATTGGTACCGACTC 59.371 50.000 3.18 0.00 0.00 3.36
574 673 2.364324 GCCTCATATTGGTACCGACTCA 59.636 50.000 3.18 0.00 0.00 3.41
575 674 3.006967 GCCTCATATTGGTACCGACTCAT 59.993 47.826 3.18 0.00 0.00 2.90
576 675 4.810790 CCTCATATTGGTACCGACTCATC 58.189 47.826 3.18 0.00 0.00 2.92
577 676 4.524714 CCTCATATTGGTACCGACTCATCT 59.475 45.833 3.18 0.00 0.00 2.90
578 677 5.336055 CCTCATATTGGTACCGACTCATCTC 60.336 48.000 3.18 0.00 0.00 2.75
579 678 4.523173 TCATATTGGTACCGACTCATCTCC 59.477 45.833 3.18 0.00 0.00 3.71
580 679 1.481871 TTGGTACCGACTCATCTCCC 58.518 55.000 7.57 0.00 0.00 4.30
581 680 0.750546 TGGTACCGACTCATCTCCCG 60.751 60.000 7.57 0.00 0.00 5.14
582 681 0.750911 GGTACCGACTCATCTCCCGT 60.751 60.000 0.00 0.00 0.00 5.28
583 682 0.381089 GTACCGACTCATCTCCCGTG 59.619 60.000 0.00 0.00 0.00 4.94
584 683 0.750546 TACCGACTCATCTCCCGTGG 60.751 60.000 0.00 0.00 0.00 4.94
585 684 2.052690 CCGACTCATCTCCCGTGGT 61.053 63.158 0.00 0.00 0.00 4.16
586 685 1.139734 CGACTCATCTCCCGTGGTG 59.860 63.158 0.00 0.00 0.00 4.17
587 686 1.517832 GACTCATCTCCCGTGGTGG 59.482 63.158 0.00 0.00 37.55 4.61
604 703 4.778143 GGGGCGGCAACTCACGAT 62.778 66.667 12.47 0.00 0.00 3.73
605 704 3.499737 GGGCGGCAACTCACGATG 61.500 66.667 12.47 0.00 0.00 3.84
606 705 4.166011 GGCGGCAACTCACGATGC 62.166 66.667 3.07 0.00 41.82 3.91
607 706 3.422303 GCGGCAACTCACGATGCA 61.422 61.111 0.00 0.00 44.32 3.96
608 707 2.476051 CGGCAACTCACGATGCAC 59.524 61.111 0.00 0.00 44.32 4.57
609 708 2.870372 GGCAACTCACGATGCACC 59.130 61.111 0.00 0.00 44.32 5.01
610 709 1.672356 GGCAACTCACGATGCACCT 60.672 57.895 0.00 0.00 44.32 4.00
611 710 0.391130 GGCAACTCACGATGCACCTA 60.391 55.000 0.00 0.00 44.32 3.08
612 711 1.002366 GCAACTCACGATGCACCTAG 58.998 55.000 0.00 0.00 42.12 3.02
613 712 1.673033 GCAACTCACGATGCACCTAGT 60.673 52.381 0.00 0.00 42.12 2.57
614 713 1.995484 CAACTCACGATGCACCTAGTG 59.005 52.381 0.00 0.00 36.51 2.74
623 722 4.792087 CACCTAGTGCCAACGGTT 57.208 55.556 0.00 0.00 0.00 4.44
624 723 2.244000 CACCTAGTGCCAACGGTTG 58.756 57.895 13.86 13.86 0.00 3.77
625 724 0.534203 CACCTAGTGCCAACGGTTGT 60.534 55.000 18.73 3.76 0.00 3.32
626 725 0.534203 ACCTAGTGCCAACGGTTGTG 60.534 55.000 18.73 11.53 0.00 3.33
627 726 1.234615 CCTAGTGCCAACGGTTGTGG 61.235 60.000 18.73 7.28 0.00 4.17
628 727 0.250124 CTAGTGCCAACGGTTGTGGA 60.250 55.000 18.73 9.32 0.00 4.02
629 728 0.398696 TAGTGCCAACGGTTGTGGAT 59.601 50.000 18.73 5.78 0.00 3.41
630 729 0.889186 AGTGCCAACGGTTGTGGATC 60.889 55.000 18.73 5.64 0.00 3.36
631 730 1.602323 TGCCAACGGTTGTGGATCC 60.602 57.895 18.73 4.20 0.00 3.36
636 735 3.499737 CGGTTGTGGATCCGCTGC 61.500 66.667 25.23 16.90 40.28 5.25
637 736 3.499737 GGTTGTGGATCCGCTGCG 61.500 66.667 25.23 16.34 0.00 5.18
638 737 2.742372 GTTGTGGATCCGCTGCGT 60.742 61.111 25.23 2.52 0.00 5.24
639 738 2.434185 TTGTGGATCCGCTGCGTC 60.434 61.111 25.23 12.54 0.00 5.19
640 739 4.794439 TGTGGATCCGCTGCGTCG 62.794 66.667 25.23 6.63 0.00 5.12
641 740 4.492160 GTGGATCCGCTGCGTCGA 62.492 66.667 21.59 12.30 0.00 4.20
642 741 3.527427 TGGATCCGCTGCGTCGAT 61.527 61.111 21.59 16.62 0.00 3.59
643 742 3.032609 GGATCCGCTGCGTCGATG 61.033 66.667 21.59 5.05 0.00 3.84
644 743 2.026157 GATCCGCTGCGTCGATGA 59.974 61.111 21.59 10.77 0.00 2.92
645 744 2.013483 GATCCGCTGCGTCGATGAG 61.013 63.158 21.59 3.49 0.00 2.90
646 745 4.854784 TCCGCTGCGTCGATGAGC 62.855 66.667 21.59 13.01 0.00 4.26
647 746 4.862092 CCGCTGCGTCGATGAGCT 62.862 66.667 21.59 0.00 0.00 4.09
648 747 2.882777 CGCTGCGTCGATGAGCTT 60.883 61.111 14.93 0.00 0.00 3.74
649 748 2.447887 CGCTGCGTCGATGAGCTTT 61.448 57.895 14.93 0.00 0.00 3.51
650 749 1.139816 CGCTGCGTCGATGAGCTTTA 61.140 55.000 14.93 0.37 0.00 1.85
651 750 0.299003 GCTGCGTCGATGAGCTTTAC 59.701 55.000 9.31 0.00 0.00 2.01
652 751 0.924090 CTGCGTCGATGAGCTTTACC 59.076 55.000 9.31 0.00 0.00 2.85
653 752 0.530744 TGCGTCGATGAGCTTTACCT 59.469 50.000 9.31 0.00 0.00 3.08
654 753 1.201343 GCGTCGATGAGCTTTACCTC 58.799 55.000 9.31 0.00 0.00 3.85
655 754 1.841450 CGTCGATGAGCTTTACCTCC 58.159 55.000 0.00 0.00 0.00 4.30
656 755 1.134367 CGTCGATGAGCTTTACCTCCA 59.866 52.381 0.00 0.00 0.00 3.86
657 756 2.223829 CGTCGATGAGCTTTACCTCCAT 60.224 50.000 0.00 0.00 0.00 3.41
658 757 3.738281 CGTCGATGAGCTTTACCTCCATT 60.738 47.826 0.00 0.00 0.00 3.16
659 758 4.192317 GTCGATGAGCTTTACCTCCATTT 58.808 43.478 0.00 0.00 0.00 2.32
660 759 5.357257 GTCGATGAGCTTTACCTCCATTTA 58.643 41.667 0.00 0.00 0.00 1.40
661 760 5.234543 GTCGATGAGCTTTACCTCCATTTAC 59.765 44.000 0.00 0.00 0.00 2.01
662 761 4.511826 CGATGAGCTTTACCTCCATTTACC 59.488 45.833 0.00 0.00 0.00 2.85
663 762 4.230745 TGAGCTTTACCTCCATTTACCC 57.769 45.455 0.00 0.00 0.00 3.69
664 763 3.589735 TGAGCTTTACCTCCATTTACCCA 59.410 43.478 0.00 0.00 0.00 4.51
665 764 4.200092 GAGCTTTACCTCCATTTACCCAG 58.800 47.826 0.00 0.00 0.00 4.45
666 765 2.688446 GCTTTACCTCCATTTACCCAGC 59.312 50.000 0.00 0.00 0.00 4.85
667 766 3.624959 GCTTTACCTCCATTTACCCAGCT 60.625 47.826 0.00 0.00 0.00 4.24
668 767 3.644966 TTACCTCCATTTACCCAGCTG 57.355 47.619 6.78 6.78 0.00 4.24
669 768 1.372501 ACCTCCATTTACCCAGCTGT 58.627 50.000 13.81 0.00 0.00 4.40
670 769 1.004745 ACCTCCATTTACCCAGCTGTG 59.995 52.381 13.81 3.15 0.00 3.66
671 770 1.281867 CCTCCATTTACCCAGCTGTGA 59.718 52.381 13.81 0.00 0.00 3.58
672 771 2.636830 CTCCATTTACCCAGCTGTGAG 58.363 52.381 13.81 3.42 0.00 3.51
673 772 1.281867 TCCATTTACCCAGCTGTGAGG 59.718 52.381 13.81 9.52 0.00 3.86
674 773 1.281867 CCATTTACCCAGCTGTGAGGA 59.718 52.381 13.81 0.00 0.00 3.71
675 774 2.636830 CATTTACCCAGCTGTGAGGAG 58.363 52.381 13.81 0.00 0.00 3.69
676 775 2.024176 TTTACCCAGCTGTGAGGAGA 57.976 50.000 13.81 0.00 0.00 3.71
677 776 2.254152 TTACCCAGCTGTGAGGAGAT 57.746 50.000 13.81 0.00 0.00 2.75
678 777 1.489481 TACCCAGCTGTGAGGAGATG 58.511 55.000 13.81 0.00 0.00 2.90
680 779 1.153208 CCAGCTGTGAGGAGATGGC 60.153 63.158 13.81 0.00 42.38 4.40
681 780 1.521010 CAGCTGTGAGGAGATGGCG 60.521 63.158 5.25 0.00 0.00 5.69
682 781 2.202987 GCTGTGAGGAGATGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
683 782 2.725312 GCTGTGAGGAGATGGCGGA 61.725 63.158 0.00 0.00 0.00 5.54
684 783 2.037620 GCTGTGAGGAGATGGCGGAT 62.038 60.000 0.00 0.00 0.00 4.18
685 784 0.249784 CTGTGAGGAGATGGCGGATG 60.250 60.000 0.00 0.00 0.00 3.51
686 785 1.596477 GTGAGGAGATGGCGGATGC 60.596 63.158 0.00 0.00 41.71 3.91
687 786 2.356793 GAGGAGATGGCGGATGCG 60.357 66.667 0.65 0.65 44.10 4.73
688 787 2.839632 AGGAGATGGCGGATGCGA 60.840 61.111 12.10 0.00 44.10 5.10
689 788 2.356793 GGAGATGGCGGATGCGAG 60.357 66.667 12.10 0.00 44.10 5.03
690 789 2.356793 GAGATGGCGGATGCGAGG 60.357 66.667 12.10 0.00 44.10 4.63
691 790 2.839632 AGATGGCGGATGCGAGGA 60.840 61.111 12.10 0.00 44.10 3.71
692 791 2.164865 GAGATGGCGGATGCGAGGAT 62.165 60.000 12.10 0.00 44.10 3.24
693 792 2.031516 GATGGCGGATGCGAGGATG 61.032 63.158 12.10 0.00 44.10 3.51
694 793 4.916293 TGGCGGATGCGAGGATGC 62.916 66.667 12.10 0.00 44.10 3.91
695 794 4.615815 GGCGGATGCGAGGATGCT 62.616 66.667 12.10 0.00 44.10 3.79
696 795 2.340078 GCGGATGCGAGGATGCTA 59.660 61.111 12.10 0.00 35.36 3.49
697 796 2.024319 GCGGATGCGAGGATGCTAC 61.024 63.158 12.10 0.00 35.36 3.58
698 797 1.373497 CGGATGCGAGGATGCTACC 60.373 63.158 0.00 0.00 35.36 3.18
699 798 1.748403 GGATGCGAGGATGCTACCA 59.252 57.895 0.00 0.00 35.36 3.25
700 799 0.320247 GGATGCGAGGATGCTACCAG 60.320 60.000 0.00 0.00 35.36 4.00
701 800 0.676184 GATGCGAGGATGCTACCAGA 59.324 55.000 0.00 0.00 35.36 3.86
702 801 0.678395 ATGCGAGGATGCTACCAGAG 59.322 55.000 0.00 0.00 35.36 3.35
703 802 1.365633 GCGAGGATGCTACCAGAGG 59.634 63.158 0.00 0.00 0.00 3.69
704 803 1.109920 GCGAGGATGCTACCAGAGGA 61.110 60.000 0.00 0.00 0.00 3.71
705 804 0.958091 CGAGGATGCTACCAGAGGAG 59.042 60.000 0.00 0.00 0.00 3.69
706 805 1.477740 CGAGGATGCTACCAGAGGAGA 60.478 57.143 0.00 0.00 0.00 3.71
707 806 2.672098 GAGGATGCTACCAGAGGAGAA 58.328 52.381 0.00 0.00 0.00 2.87
708 807 3.034635 GAGGATGCTACCAGAGGAGAAA 58.965 50.000 0.00 0.00 0.00 2.52
709 808 3.645687 GAGGATGCTACCAGAGGAGAAAT 59.354 47.826 0.00 0.00 0.00 2.17
710 809 3.390639 AGGATGCTACCAGAGGAGAAATG 59.609 47.826 0.00 0.00 0.00 2.32
711 810 2.698855 TGCTACCAGAGGAGAAATGC 57.301 50.000 0.00 0.00 0.00 3.56
712 811 1.908619 TGCTACCAGAGGAGAAATGCA 59.091 47.619 0.00 0.00 0.00 3.96
713 812 2.305635 TGCTACCAGAGGAGAAATGCAA 59.694 45.455 0.00 0.00 0.00 4.08
714 813 3.054139 TGCTACCAGAGGAGAAATGCAAT 60.054 43.478 0.00 0.00 0.00 3.56
715 814 3.950395 GCTACCAGAGGAGAAATGCAATT 59.050 43.478 0.00 0.00 38.98 2.32
716 815 4.036144 GCTACCAGAGGAGAAATGCAATTC 59.964 45.833 6.38 6.38 33.67 2.17
717 816 3.012518 ACCAGAGGAGAAATGCAATTCG 58.987 45.455 8.82 0.00 33.67 3.34
779 879 4.997395 TGCAGTATCCTCTCAAAAGTCAAC 59.003 41.667 0.00 0.00 0.00 3.18
879 1001 0.448593 CGGTCAAGTCTCGTCTCTCC 59.551 60.000 0.00 0.00 0.00 3.71
895 1017 0.827368 CTCCCTCCTGTTCCTACTGC 59.173 60.000 0.00 0.00 0.00 4.40
896 1018 0.413832 TCCCTCCTGTTCCTACTGCT 59.586 55.000 0.00 0.00 0.00 4.24
897 1019 1.644337 TCCCTCCTGTTCCTACTGCTA 59.356 52.381 0.00 0.00 0.00 3.49
1455 1596 2.443952 TCCTGCCGTGATCCCGAT 60.444 61.111 0.00 0.00 0.00 4.18
1707 1882 1.212229 GACGTTCGTCAGGACCTCC 59.788 63.158 18.42 0.00 35.41 4.30
1727 1902 1.456287 GGCAGGTCACAAAGGAGGT 59.544 57.895 0.00 0.00 0.00 3.85
1815 1990 2.054232 TGGAGAGAGTATCGACCACC 57.946 55.000 0.00 0.00 42.67 4.61
2304 2481 6.042143 GGTCACGAATGGATAATTTTGCAAT 58.958 36.000 0.00 0.00 0.00 3.56
2373 2550 5.776716 TCTTTGCCATCTTTTCTGAAGGAAT 59.223 36.000 0.00 0.00 33.53 3.01
2489 2672 7.214467 TGTCCACTTATGTTTTTCATTCTCC 57.786 36.000 0.00 0.00 37.91 3.71
2557 2740 3.348119 TGTGCCTGGATATTTTGCGTTA 58.652 40.909 0.00 0.00 0.00 3.18
2566 2749 7.201732 CCTGGATATTTTGCGTTATGACTTCTT 60.202 37.037 0.00 0.00 0.00 2.52
2567 2750 8.725405 TGGATATTTTGCGTTATGACTTCTTA 57.275 30.769 0.00 0.00 0.00 2.10
2568 2751 8.826710 TGGATATTTTGCGTTATGACTTCTTAG 58.173 33.333 0.00 0.00 0.00 2.18
2569 2752 8.827677 GGATATTTTGCGTTATGACTTCTTAGT 58.172 33.333 0.00 0.00 37.31 2.24
2603 2786 7.973944 AGTGTTTTTATTCCAGTTCAGTTGTTC 59.026 33.333 0.00 0.00 0.00 3.18
2709 2892 8.416329 TCATCGATATGGACATATGGTCTATTG 58.584 37.037 9.40 3.40 44.40 1.90
2741 2924 1.197721 CGGCAGTTGACCTTTGATCAC 59.802 52.381 0.00 0.00 0.00 3.06
2770 2953 3.191371 GTGATGTTCCTTTTCGAGCCATT 59.809 43.478 0.00 0.00 0.00 3.16
2791 2974 5.385509 TTCGACTGAAGTCATATGTGTCA 57.614 39.130 10.88 4.40 44.99 3.58
2792 2975 5.582689 TCGACTGAAGTCATATGTGTCAT 57.417 39.130 10.88 0.00 44.99 3.06
2796 2979 5.911752 ACTGAAGTCATATGTGTCATCTCC 58.088 41.667 1.90 0.00 0.00 3.71
2820 3003 9.225682 TCCATCCACTATTAGAGGAAAATACTT 57.774 33.333 13.00 0.00 38.46 2.24
2821 3004 9.277783 CCATCCACTATTAGAGGAAAATACTTG 57.722 37.037 13.00 6.00 38.46 3.16
2842 3025 8.926092 ACTTGATAGACTATATAGTGCAGTCA 57.074 34.615 20.13 14.20 40.94 3.41
2843 3026 9.355916 ACTTGATAGACTATATAGTGCAGTCAA 57.644 33.333 20.13 19.16 40.94 3.18
2845 3028 9.967346 TTGATAGACTATATAGTGCAGTCAAAC 57.033 33.333 20.13 2.55 40.94 2.93
2846 3029 9.131791 TGATAGACTATATAGTGCAGTCAAACA 57.868 33.333 20.13 5.99 40.94 2.83
2847 3030 9.619316 GATAGACTATATAGTGCAGTCAAACAG 57.381 37.037 20.13 0.00 40.94 3.16
2848 3031 6.276847 AGACTATATAGTGCAGTCAAACAGC 58.723 40.000 20.13 1.16 40.94 4.40
2849 3032 6.097554 AGACTATATAGTGCAGTCAAACAGCT 59.902 38.462 20.13 3.43 40.94 4.24
2850 3033 7.285629 AGACTATATAGTGCAGTCAAACAGCTA 59.714 37.037 20.13 0.00 40.94 3.32
2851 3034 7.957002 ACTATATAGTGCAGTCAAACAGCTAT 58.043 34.615 14.71 0.00 34.72 2.97
2852 3035 8.424918 ACTATATAGTGCAGTCAAACAGCTATT 58.575 33.333 14.71 0.00 34.72 1.73
2853 3036 9.914131 CTATATAGTGCAGTCAAACAGCTATTA 57.086 33.333 0.00 0.00 31.40 0.98
2854 3037 8.824159 ATATAGTGCAGTCAAACAGCTATTAG 57.176 34.615 0.00 0.00 31.40 1.73
2855 3038 4.899502 AGTGCAGTCAAACAGCTATTAGT 58.100 39.130 0.00 0.00 31.40 2.24
2856 3039 4.932200 AGTGCAGTCAAACAGCTATTAGTC 59.068 41.667 0.00 0.00 31.40 2.59
2857 3040 4.690748 GTGCAGTCAAACAGCTATTAGTCA 59.309 41.667 0.00 0.00 31.40 3.41
2858 3041 4.690748 TGCAGTCAAACAGCTATTAGTCAC 59.309 41.667 0.00 0.00 31.40 3.67
2859 3042 4.932200 GCAGTCAAACAGCTATTAGTCACT 59.068 41.667 0.00 0.00 0.00 3.41
2860 3043 5.163913 GCAGTCAAACAGCTATTAGTCACTG 60.164 44.000 0.00 0.00 36.22 3.66
2861 3044 6.159293 CAGTCAAACAGCTATTAGTCACTGA 58.841 40.000 0.00 0.00 34.25 3.41
2862 3045 6.309980 CAGTCAAACAGCTATTAGTCACTGAG 59.690 42.308 0.00 0.00 34.25 3.35
2863 3046 5.578727 GTCAAACAGCTATTAGTCACTGAGG 59.421 44.000 0.00 0.00 34.25 3.86
2864 3047 5.480422 TCAAACAGCTATTAGTCACTGAGGA 59.520 40.000 0.00 0.00 34.25 3.71
2865 3048 5.590530 AACAGCTATTAGTCACTGAGGAG 57.409 43.478 0.00 0.00 34.25 3.69
2866 3049 4.605183 ACAGCTATTAGTCACTGAGGAGT 58.395 43.478 0.00 0.00 34.25 3.85
2867 3050 5.756918 ACAGCTATTAGTCACTGAGGAGTA 58.243 41.667 0.00 0.00 34.25 2.59
2868 3051 5.591067 ACAGCTATTAGTCACTGAGGAGTAC 59.409 44.000 0.00 0.00 34.25 2.73
2869 3052 5.590663 CAGCTATTAGTCACTGAGGAGTACA 59.409 44.000 0.00 0.00 31.67 2.90
2870 3053 5.591067 AGCTATTAGTCACTGAGGAGTACAC 59.409 44.000 0.00 0.00 0.00 2.90
2871 3054 5.591067 GCTATTAGTCACTGAGGAGTACACT 59.409 44.000 0.00 0.00 31.99 3.55
2872 3055 6.095720 GCTATTAGTCACTGAGGAGTACACTT 59.904 42.308 0.00 0.00 30.49 3.16
2873 3056 5.961396 TTAGTCACTGAGGAGTACACTTC 57.039 43.478 0.00 0.00 30.49 3.01
2874 3057 3.158676 AGTCACTGAGGAGTACACTTCC 58.841 50.000 0.00 0.00 0.00 3.46
2875 3058 2.095161 GTCACTGAGGAGTACACTTCCG 60.095 54.545 0.00 0.00 0.00 4.30
2876 3059 1.887198 CACTGAGGAGTACACTTCCGT 59.113 52.381 0.00 0.00 0.00 4.69
2877 3060 1.887198 ACTGAGGAGTACACTTCCGTG 59.113 52.381 0.00 0.00 46.63 4.94
2878 3061 0.601558 TGAGGAGTACACTTCCGTGC 59.398 55.000 0.00 0.00 45.10 5.34
2879 3062 0.889306 GAGGAGTACACTTCCGTGCT 59.111 55.000 0.00 0.00 45.10 4.40
2880 3063 2.089980 GAGGAGTACACTTCCGTGCTA 58.910 52.381 0.00 0.00 45.10 3.49
2881 3064 1.817447 AGGAGTACACTTCCGTGCTAC 59.183 52.381 0.00 0.00 45.10 3.58
2882 3065 1.542915 GGAGTACACTTCCGTGCTACA 59.457 52.381 0.00 0.00 45.10 2.74
2883 3066 2.029649 GGAGTACACTTCCGTGCTACAA 60.030 50.000 0.00 0.00 45.10 2.41
2884 3067 3.368116 GGAGTACACTTCCGTGCTACAAT 60.368 47.826 0.00 0.00 45.10 2.71
2885 3068 4.142315 GGAGTACACTTCCGTGCTACAATA 60.142 45.833 0.00 0.00 45.10 1.90
2886 3069 5.395682 AGTACACTTCCGTGCTACAATAA 57.604 39.130 0.00 0.00 45.10 1.40
2887 3070 5.786311 AGTACACTTCCGTGCTACAATAAA 58.214 37.500 0.00 0.00 45.10 1.40
2888 3071 6.225318 AGTACACTTCCGTGCTACAATAAAA 58.775 36.000 0.00 0.00 45.10 1.52
2889 3072 5.352643 ACACTTCCGTGCTACAATAAAAC 57.647 39.130 0.00 0.00 45.10 2.43
2890 3073 4.214758 ACACTTCCGTGCTACAATAAAACC 59.785 41.667 0.00 0.00 45.10 3.27
2891 3074 4.454504 CACTTCCGTGCTACAATAAAACCT 59.545 41.667 0.00 0.00 33.82 3.50
2892 3075 5.048991 CACTTCCGTGCTACAATAAAACCTT 60.049 40.000 0.00 0.00 33.82 3.50
2893 3076 6.148150 CACTTCCGTGCTACAATAAAACCTTA 59.852 38.462 0.00 0.00 33.82 2.69
2894 3077 6.148315 ACTTCCGTGCTACAATAAAACCTTAC 59.852 38.462 0.00 0.00 0.00 2.34
2895 3078 5.549347 TCCGTGCTACAATAAAACCTTACA 58.451 37.500 0.00 0.00 0.00 2.41
2896 3079 5.640357 TCCGTGCTACAATAAAACCTTACAG 59.360 40.000 0.00 0.00 0.00 2.74
2897 3080 5.163794 CCGTGCTACAATAAAACCTTACAGG 60.164 44.000 0.00 0.00 42.49 4.00
2898 3081 5.640357 CGTGCTACAATAAAACCTTACAGGA 59.360 40.000 0.00 0.00 37.67 3.86
2899 3082 6.401796 CGTGCTACAATAAAACCTTACAGGAC 60.402 42.308 0.00 0.00 37.67 3.85
2900 3083 6.653740 GTGCTACAATAAAACCTTACAGGACT 59.346 38.462 0.00 0.00 37.67 3.85
2901 3084 7.174426 GTGCTACAATAAAACCTTACAGGACTT 59.826 37.037 0.00 0.00 37.67 3.01
2902 3085 7.389607 TGCTACAATAAAACCTTACAGGACTTC 59.610 37.037 0.00 0.00 37.67 3.01
2903 3086 7.606839 GCTACAATAAAACCTTACAGGACTTCT 59.393 37.037 0.00 0.00 37.67 2.85
2904 3087 7.981102 ACAATAAAACCTTACAGGACTTCTC 57.019 36.000 0.00 0.00 37.67 2.87
2905 3088 7.514721 ACAATAAAACCTTACAGGACTTCTCA 58.485 34.615 0.00 0.00 37.67 3.27
2906 3089 7.661847 ACAATAAAACCTTACAGGACTTCTCAG 59.338 37.037 0.00 0.00 37.67 3.35
2907 3090 5.632034 AAAACCTTACAGGACTTCTCAGT 57.368 39.130 0.00 0.00 37.67 3.41
2908 3091 5.632034 AAACCTTACAGGACTTCTCAGTT 57.368 39.130 0.00 0.00 37.67 3.16
2909 3092 4.608948 ACCTTACAGGACTTCTCAGTTG 57.391 45.455 0.00 0.00 37.67 3.16
2910 3093 3.325135 ACCTTACAGGACTTCTCAGTTGG 59.675 47.826 0.00 0.00 37.67 3.77
2911 3094 3.330267 CTTACAGGACTTCTCAGTTGGC 58.670 50.000 0.00 0.00 31.22 4.52
2912 3095 1.131638 ACAGGACTTCTCAGTTGGCA 58.868 50.000 0.00 0.00 31.22 4.92
2913 3096 1.202698 ACAGGACTTCTCAGTTGGCAC 60.203 52.381 0.00 0.00 31.22 5.01
2914 3097 0.398318 AGGACTTCTCAGTTGGCACC 59.602 55.000 0.00 0.00 31.22 5.01
2915 3098 0.108585 GGACTTCTCAGTTGGCACCA 59.891 55.000 0.00 0.00 31.22 4.17
2916 3099 1.230324 GACTTCTCAGTTGGCACCAC 58.770 55.000 0.00 0.00 31.22 4.16
2917 3100 0.839946 ACTTCTCAGTTGGCACCACT 59.160 50.000 0.00 0.00 0.00 4.00
2918 3101 2.037251 GACTTCTCAGTTGGCACCACTA 59.963 50.000 0.00 0.00 31.22 2.74
2919 3102 2.639839 ACTTCTCAGTTGGCACCACTAT 59.360 45.455 0.00 0.00 0.00 2.12
2920 3103 3.838317 ACTTCTCAGTTGGCACCACTATA 59.162 43.478 0.00 0.00 0.00 1.31
2921 3104 4.471386 ACTTCTCAGTTGGCACCACTATAT 59.529 41.667 0.00 0.00 0.00 0.86
2922 3105 5.661312 ACTTCTCAGTTGGCACCACTATATA 59.339 40.000 0.00 0.00 0.00 0.86
2923 3106 6.327626 ACTTCTCAGTTGGCACCACTATATAT 59.672 38.462 0.00 0.00 0.00 0.86
2924 3107 6.101650 TCTCAGTTGGCACCACTATATATG 57.898 41.667 0.00 0.00 0.00 1.78
2925 3108 4.641396 TCAGTTGGCACCACTATATATGC 58.359 43.478 0.00 0.00 37.35 3.14
2946 3129 1.401670 CGGTTTCTCGACTCCTCACTG 60.402 57.143 0.00 0.00 0.00 3.66
2959 3142 4.466726 ACTCCTCACTGTCCTTTACCATAC 59.533 45.833 0.00 0.00 0.00 2.39
2978 3161 3.834489 ACCATCCAGATTGCTACTGAG 57.166 47.619 0.00 0.00 37.54 3.35
2981 3164 3.640498 CCATCCAGATTGCTACTGAGAGA 59.360 47.826 0.00 0.00 37.54 3.10
3007 3190 5.549742 AAAAACATCCAGATTCCAAAGCA 57.450 34.783 0.00 0.00 0.00 3.91
3008 3191 4.796038 AAACATCCAGATTCCAAAGCAG 57.204 40.909 0.00 0.00 0.00 4.24
3009 3192 3.446442 ACATCCAGATTCCAAAGCAGT 57.554 42.857 0.00 0.00 0.00 4.40
3010 3193 4.574674 ACATCCAGATTCCAAAGCAGTA 57.425 40.909 0.00 0.00 0.00 2.74
3011 3194 4.521146 ACATCCAGATTCCAAAGCAGTAG 58.479 43.478 0.00 0.00 0.00 2.57
3012 3195 3.634397 TCCAGATTCCAAAGCAGTAGG 57.366 47.619 0.00 0.00 0.00 3.18
3013 3196 3.181329 TCCAGATTCCAAAGCAGTAGGA 58.819 45.455 0.00 0.00 0.00 2.94
3014 3197 3.587061 TCCAGATTCCAAAGCAGTAGGAA 59.413 43.478 0.00 0.00 44.77 3.36
3015 3198 4.042809 TCCAGATTCCAAAGCAGTAGGAAA 59.957 41.667 0.00 0.00 43.96 3.13
3016 3199 4.397417 CCAGATTCCAAAGCAGTAGGAAAG 59.603 45.833 0.00 0.00 43.96 2.62
3017 3200 5.006386 CAGATTCCAAAGCAGTAGGAAAGT 58.994 41.667 0.00 0.00 43.96 2.66
3022 3205 3.999663 CCAAAGCAGTAGGAAAGTCTGAG 59.000 47.826 0.00 0.00 0.00 3.35
3077 3260 8.028652 TGATCAATTTGGGTAAAAAGAAGGTT 57.971 30.769 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 6.668283 TCATTTCTAGTTCCAGGCTACTTACT 59.332 38.462 0.00 0.00 0.00 2.24
126 127 6.565974 AGCCCTATATGTCTCCTCATTTCTA 58.434 40.000 0.00 0.00 0.00 2.10
209 214 7.880195 CCTTATGGAATCATTTCTCTTATCCGT 59.120 37.037 0.00 0.00 34.96 4.69
210 215 7.335422 CCCTTATGGAATCATTTCTCTTATCCG 59.665 40.741 0.00 0.00 35.39 4.18
234 239 8.378565 TGATGGATTCTAATTGAGTTCTATCCC 58.621 37.037 0.00 0.00 31.68 3.85
235 240 9.434420 CTGATGGATTCTAATTGAGTTCTATCC 57.566 37.037 0.00 0.00 31.68 2.59
295 383 5.554070 TCATTGCAGATGAACTTTCTCTCA 58.446 37.500 8.52 0.00 0.00 3.27
310 398 9.908152 ATCATGATATAAACAACATCATTGCAG 57.092 29.630 6.36 0.00 37.31 4.41
360 459 2.731572 TGGACCCGTAGAAAGGAGTAG 58.268 52.381 0.00 0.00 0.00 2.57
365 464 8.459911 AAATATTATTTGGACCCGTAGAAAGG 57.540 34.615 0.83 0.00 0.00 3.11
402 501 9.450807 GCAGCGTATTCTTATGAAACATAAAAT 57.549 29.630 0.00 0.00 35.63 1.82
403 502 8.673711 AGCAGCGTATTCTTATGAAACATAAAA 58.326 29.630 0.00 0.00 35.63 1.52
404 503 8.122330 CAGCAGCGTATTCTTATGAAACATAAA 58.878 33.333 0.00 0.00 35.63 1.40
405 504 7.279981 ACAGCAGCGTATTCTTATGAAACATAA 59.720 33.333 0.00 0.00 35.63 1.90
420 519 2.821366 GCAGCCACAGCAGCGTAT 60.821 61.111 0.00 0.00 41.98 3.06
427 526 2.104331 GATGCATGCAGCCACAGC 59.896 61.111 25.21 0.00 44.83 4.40
428 527 1.725557 GGAGATGCATGCAGCCACAG 61.726 60.000 30.96 0.00 44.83 3.66
430 529 2.487532 GGGAGATGCATGCAGCCAC 61.488 63.158 30.96 23.82 44.83 5.01
431 530 2.124024 GGGAGATGCATGCAGCCA 60.124 61.111 30.96 4.92 44.83 4.75
432 531 1.324740 TTTGGGAGATGCATGCAGCC 61.325 55.000 30.96 25.93 44.83 4.85
433 532 0.750850 ATTTGGGAGATGCATGCAGC 59.249 50.000 27.98 27.98 45.96 5.25
434 533 1.538204 GCATTTGGGAGATGCATGCAG 60.538 52.381 26.69 9.14 46.96 4.41
435 534 0.462375 GCATTTGGGAGATGCATGCA 59.538 50.000 25.04 25.04 46.96 3.96
436 535 3.284197 GCATTTGGGAGATGCATGC 57.716 52.632 11.82 11.82 46.96 4.06
440 539 1.030457 CCTCTGCATTTGGGAGATGC 58.970 55.000 1.66 2.31 43.58 3.91
442 541 0.106318 GGCCTCTGCATTTGGGAGAT 60.106 55.000 0.00 0.00 43.58 2.75
443 542 1.304282 GGCCTCTGCATTTGGGAGA 59.696 57.895 0.00 0.00 42.24 3.71
444 543 2.117156 CGGCCTCTGCATTTGGGAG 61.117 63.158 0.00 0.00 40.13 4.30
445 544 1.925285 ATCGGCCTCTGCATTTGGGA 61.925 55.000 0.00 0.00 40.13 4.37
447 546 0.749091 TCATCGGCCTCTGCATTTGG 60.749 55.000 0.00 0.00 40.13 3.28
449 548 1.134007 TGATCATCGGCCTCTGCATTT 60.134 47.619 0.00 0.00 40.13 2.32
450 549 0.471191 TGATCATCGGCCTCTGCATT 59.529 50.000 0.00 0.00 40.13 3.56
451 550 0.691332 ATGATCATCGGCCTCTGCAT 59.309 50.000 1.18 0.00 40.13 3.96
452 551 0.034476 GATGATCATCGGCCTCTGCA 59.966 55.000 19.55 0.00 40.13 4.41
454 553 0.975135 AGGATGATCATCGGCCTCTG 59.025 55.000 25.60 0.00 38.69 3.35
455 554 1.622811 GAAGGATGATCATCGGCCTCT 59.377 52.381 25.60 15.54 38.69 3.69
456 555 1.622811 AGAAGGATGATCATCGGCCTC 59.377 52.381 25.60 18.58 38.69 4.70
457 556 1.727062 AGAAGGATGATCATCGGCCT 58.273 50.000 25.60 17.12 38.69 5.19
458 557 2.557920 AAGAAGGATGATCATCGGCC 57.442 50.000 25.60 15.25 38.69 6.13
459 558 6.377327 TTTTAAAGAAGGATGATCATCGGC 57.623 37.500 25.60 17.80 38.69 5.54
482 581 7.123547 TGGTTGAAGACAAGTGTATTCCTTTTT 59.876 33.333 14.42 0.00 43.45 1.94
483 582 6.605594 TGGTTGAAGACAAGTGTATTCCTTTT 59.394 34.615 14.42 0.00 43.45 2.27
484 583 6.126409 TGGTTGAAGACAAGTGTATTCCTTT 58.874 36.000 14.42 0.00 43.45 3.11
485 584 5.690865 TGGTTGAAGACAAGTGTATTCCTT 58.309 37.500 14.42 0.43 43.45 3.36
486 585 5.304686 TGGTTGAAGACAAGTGTATTCCT 57.695 39.130 14.42 0.00 43.45 3.36
487 586 6.093633 GGTATGGTTGAAGACAAGTGTATTCC 59.906 42.308 14.42 3.01 43.45 3.01
489 588 5.944007 GGGTATGGTTGAAGACAAGTGTATT 59.056 40.000 0.00 0.00 36.64 1.89
490 589 5.013704 TGGGTATGGTTGAAGACAAGTGTAT 59.986 40.000 0.00 0.00 36.64 2.29
491 590 4.348461 TGGGTATGGTTGAAGACAAGTGTA 59.652 41.667 0.00 0.00 36.64 2.90
494 593 3.810743 GCTGGGTATGGTTGAAGACAAGT 60.811 47.826 0.00 0.00 36.64 3.16
497 596 1.985159 AGCTGGGTATGGTTGAAGACA 59.015 47.619 0.00 0.00 0.00 3.41
498 597 2.027192 TGAGCTGGGTATGGTTGAAGAC 60.027 50.000 0.00 0.00 0.00 3.01
500 599 2.787473 TGAGCTGGGTATGGTTGAAG 57.213 50.000 0.00 0.00 0.00 3.02
503 602 2.684881 GTGATTGAGCTGGGTATGGTTG 59.315 50.000 0.00 0.00 0.00 3.77
504 603 2.680805 CGTGATTGAGCTGGGTATGGTT 60.681 50.000 0.00 0.00 0.00 3.67
505 604 1.134401 CGTGATTGAGCTGGGTATGGT 60.134 52.381 0.00 0.00 0.00 3.55
506 605 1.586422 CGTGATTGAGCTGGGTATGG 58.414 55.000 0.00 0.00 0.00 2.74
509 608 1.754803 CTACCGTGATTGAGCTGGGTA 59.245 52.381 0.00 0.00 0.00 3.69
510 609 0.537188 CTACCGTGATTGAGCTGGGT 59.463 55.000 0.00 0.00 0.00 4.51
513 612 2.093973 ACCTTCTACCGTGATTGAGCTG 60.094 50.000 0.00 0.00 0.00 4.24
514 613 2.180276 ACCTTCTACCGTGATTGAGCT 58.820 47.619 0.00 0.00 0.00 4.09
515 614 2.674796 ACCTTCTACCGTGATTGAGC 57.325 50.000 0.00 0.00 0.00 4.26
516 615 5.357314 TCTTCTACCTTCTACCGTGATTGAG 59.643 44.000 0.00 0.00 0.00 3.02
517 616 5.125097 GTCTTCTACCTTCTACCGTGATTGA 59.875 44.000 0.00 0.00 0.00 2.57
518 617 5.341617 GTCTTCTACCTTCTACCGTGATTG 58.658 45.833 0.00 0.00 0.00 2.67
534 633 3.840666 AGGCTTCTCATTGTGGTCTTCTA 59.159 43.478 0.00 0.00 0.00 2.10
535 634 2.641815 AGGCTTCTCATTGTGGTCTTCT 59.358 45.455 0.00 0.00 0.00 2.85
537 636 2.373169 TGAGGCTTCTCATTGTGGTCTT 59.627 45.455 0.00 0.00 42.13 3.01
538 637 1.980765 TGAGGCTTCTCATTGTGGTCT 59.019 47.619 0.00 0.00 42.13 3.85
539 638 2.479566 TGAGGCTTCTCATTGTGGTC 57.520 50.000 0.00 0.00 42.13 4.02
548 647 3.321111 TCGGTACCAATATGAGGCTTCTC 59.679 47.826 13.54 0.00 38.00 2.87
549 648 3.069729 GTCGGTACCAATATGAGGCTTCT 59.930 47.826 13.54 0.00 0.00 2.85
550 649 3.069729 AGTCGGTACCAATATGAGGCTTC 59.930 47.826 13.54 0.00 0.00 3.86
551 650 3.039011 AGTCGGTACCAATATGAGGCTT 58.961 45.455 13.54 0.00 0.00 4.35
552 651 2.628657 GAGTCGGTACCAATATGAGGCT 59.371 50.000 13.54 0.00 0.00 4.58
553 652 2.364324 TGAGTCGGTACCAATATGAGGC 59.636 50.000 13.54 0.00 0.00 4.70
554 653 4.524714 AGATGAGTCGGTACCAATATGAGG 59.475 45.833 13.54 0.00 0.00 3.86
555 654 5.336055 GGAGATGAGTCGGTACCAATATGAG 60.336 48.000 13.54 0.00 0.00 2.90
556 655 4.523173 GGAGATGAGTCGGTACCAATATGA 59.477 45.833 13.54 0.00 0.00 2.15
557 656 4.322049 GGGAGATGAGTCGGTACCAATATG 60.322 50.000 13.54 0.00 0.00 1.78
558 657 3.833070 GGGAGATGAGTCGGTACCAATAT 59.167 47.826 13.54 0.00 0.00 1.28
559 658 3.228453 GGGAGATGAGTCGGTACCAATA 58.772 50.000 13.54 0.00 0.00 1.90
560 659 2.040178 GGGAGATGAGTCGGTACCAAT 58.960 52.381 13.54 0.00 0.00 3.16
561 660 1.481871 GGGAGATGAGTCGGTACCAA 58.518 55.000 13.54 0.00 0.00 3.67
562 661 0.750546 CGGGAGATGAGTCGGTACCA 60.751 60.000 13.54 0.00 0.00 3.25
563 662 0.750911 ACGGGAGATGAGTCGGTACC 60.751 60.000 0.16 0.16 0.00 3.34
564 663 0.381089 CACGGGAGATGAGTCGGTAC 59.619 60.000 0.00 0.00 0.00 3.34
565 664 0.750546 CCACGGGAGATGAGTCGGTA 60.751 60.000 0.00 0.00 0.00 4.02
566 665 2.052690 CCACGGGAGATGAGTCGGT 61.053 63.158 0.00 0.00 0.00 4.69
567 666 2.052690 ACCACGGGAGATGAGTCGG 61.053 63.158 0.00 0.00 0.00 4.79
568 667 1.139734 CACCACGGGAGATGAGTCG 59.860 63.158 0.00 0.00 0.00 4.18
569 668 1.517832 CCACCACGGGAGATGAGTC 59.482 63.158 0.00 0.00 0.00 3.36
570 669 3.713650 CCACCACGGGAGATGAGT 58.286 61.111 0.00 0.00 0.00 3.41
587 686 4.778143 ATCGTGAGTTGCCGCCCC 62.778 66.667 0.00 0.00 0.00 5.80
588 687 3.499737 CATCGTGAGTTGCCGCCC 61.500 66.667 0.00 0.00 0.00 6.13
594 693 1.995484 CACTAGGTGCATCGTGAGTTG 59.005 52.381 0.00 0.00 0.00 3.16
595 694 2.370281 CACTAGGTGCATCGTGAGTT 57.630 50.000 0.00 0.00 0.00 3.01
606 705 0.534203 ACAACCGTTGGCACTAGGTG 60.534 55.000 15.60 1.39 37.03 4.00
607 706 0.534203 CACAACCGTTGGCACTAGGT 60.534 55.000 15.60 2.29 38.88 3.08
608 707 1.234615 CCACAACCGTTGGCACTAGG 61.235 60.000 15.60 4.03 34.12 3.02
609 708 0.250124 TCCACAACCGTTGGCACTAG 60.250 55.000 15.60 0.00 34.12 2.57
610 709 0.398696 ATCCACAACCGTTGGCACTA 59.601 50.000 15.60 0.00 34.12 2.74
611 710 0.889186 GATCCACAACCGTTGGCACT 60.889 55.000 15.60 0.00 34.12 4.40
612 711 1.579429 GATCCACAACCGTTGGCAC 59.421 57.895 15.60 0.00 34.12 5.01
613 712 1.602323 GGATCCACAACCGTTGGCA 60.602 57.895 15.60 0.00 34.12 4.92
614 713 2.686816 CGGATCCACAACCGTTGGC 61.687 63.158 13.41 0.10 43.53 4.52
615 714 3.573558 CGGATCCACAACCGTTGG 58.426 61.111 13.41 0.00 43.53 3.77
620 719 3.499737 CGCAGCGGATCCACAACC 61.500 66.667 13.41 0.00 0.00 3.77
621 720 2.740714 GACGCAGCGGATCCACAAC 61.741 63.158 21.15 0.00 0.00 3.32
622 721 2.434185 GACGCAGCGGATCCACAA 60.434 61.111 21.15 0.00 0.00 3.33
623 722 4.794439 CGACGCAGCGGATCCACA 62.794 66.667 21.15 0.00 0.00 4.17
624 723 3.774959 ATCGACGCAGCGGATCCAC 62.775 63.158 21.15 0.99 0.00 4.02
625 724 3.527427 ATCGACGCAGCGGATCCA 61.527 61.111 21.15 0.00 0.00 3.41
626 725 3.032609 CATCGACGCAGCGGATCC 61.033 66.667 21.15 0.00 0.00 3.36
627 726 2.013483 CTCATCGACGCAGCGGATC 61.013 63.158 21.15 7.60 0.00 3.36
628 727 2.026734 CTCATCGACGCAGCGGAT 59.973 61.111 21.15 10.30 0.00 4.18
629 728 4.854784 GCTCATCGACGCAGCGGA 62.855 66.667 21.15 8.09 0.00 5.54
630 729 4.862092 AGCTCATCGACGCAGCGG 62.862 66.667 21.15 1.60 38.26 5.52
631 730 1.139816 TAAAGCTCATCGACGCAGCG 61.140 55.000 14.82 14.82 38.26 5.18
632 731 0.299003 GTAAAGCTCATCGACGCAGC 59.701 55.000 4.29 4.29 0.00 5.25
633 732 0.924090 GGTAAAGCTCATCGACGCAG 59.076 55.000 6.05 0.00 0.00 5.18
634 733 0.530744 AGGTAAAGCTCATCGACGCA 59.469 50.000 6.05 0.00 0.00 5.24
635 734 1.201343 GAGGTAAAGCTCATCGACGC 58.799 55.000 4.35 0.00 0.00 5.19
636 735 1.134367 TGGAGGTAAAGCTCATCGACG 59.866 52.381 11.02 0.00 0.00 5.12
637 736 2.961526 TGGAGGTAAAGCTCATCGAC 57.038 50.000 11.02 0.00 0.00 4.20
638 737 4.487714 AAATGGAGGTAAAGCTCATCGA 57.512 40.909 11.02 0.00 0.00 3.59
639 738 4.511826 GGTAAATGGAGGTAAAGCTCATCG 59.488 45.833 11.02 0.00 0.00 3.84
640 739 4.822350 GGGTAAATGGAGGTAAAGCTCATC 59.178 45.833 11.02 0.00 0.00 2.92
641 740 4.229582 TGGGTAAATGGAGGTAAAGCTCAT 59.770 41.667 11.02 1.06 0.00 2.90
642 741 3.589735 TGGGTAAATGGAGGTAAAGCTCA 59.410 43.478 11.02 0.00 0.00 4.26
643 742 4.200092 CTGGGTAAATGGAGGTAAAGCTC 58.800 47.826 0.46 0.46 0.00 4.09
644 743 3.624959 GCTGGGTAAATGGAGGTAAAGCT 60.625 47.826 0.00 0.00 0.00 3.74
645 744 2.688446 GCTGGGTAAATGGAGGTAAAGC 59.312 50.000 0.00 0.00 0.00 3.51
646 745 3.947834 CAGCTGGGTAAATGGAGGTAAAG 59.052 47.826 5.57 0.00 0.00 1.85
647 746 3.332485 ACAGCTGGGTAAATGGAGGTAAA 59.668 43.478 19.93 0.00 0.00 2.01
648 747 2.916934 ACAGCTGGGTAAATGGAGGTAA 59.083 45.455 19.93 0.00 0.00 2.85
649 748 2.238646 CACAGCTGGGTAAATGGAGGTA 59.761 50.000 19.93 0.00 0.00 3.08
650 749 1.004745 CACAGCTGGGTAAATGGAGGT 59.995 52.381 19.93 0.00 0.00 3.85
651 750 1.281867 TCACAGCTGGGTAAATGGAGG 59.718 52.381 17.28 0.00 0.00 4.30
652 751 2.636830 CTCACAGCTGGGTAAATGGAG 58.363 52.381 17.28 0.00 0.00 3.86
653 752 1.281867 CCTCACAGCTGGGTAAATGGA 59.718 52.381 17.28 0.00 0.00 3.41
654 753 1.281867 TCCTCACAGCTGGGTAAATGG 59.718 52.381 17.28 11.45 0.00 3.16
655 754 2.237143 TCTCCTCACAGCTGGGTAAATG 59.763 50.000 17.28 4.49 0.00 2.32
656 755 2.551270 TCTCCTCACAGCTGGGTAAAT 58.449 47.619 17.28 0.00 0.00 1.40
657 756 2.024176 TCTCCTCACAGCTGGGTAAA 57.976 50.000 17.28 1.16 0.00 2.01
658 757 1.833630 CATCTCCTCACAGCTGGGTAA 59.166 52.381 17.28 1.55 0.00 2.85
659 758 1.489481 CATCTCCTCACAGCTGGGTA 58.511 55.000 17.28 1.61 0.00 3.69
660 759 1.270414 CCATCTCCTCACAGCTGGGT 61.270 60.000 17.28 0.00 0.00 4.51
661 760 1.525923 CCATCTCCTCACAGCTGGG 59.474 63.158 19.93 15.69 0.00 4.45
662 761 1.153208 GCCATCTCCTCACAGCTGG 60.153 63.158 19.93 7.28 33.45 4.85
663 762 1.521010 CGCCATCTCCTCACAGCTG 60.521 63.158 13.48 13.48 0.00 4.24
664 763 2.729479 CCGCCATCTCCTCACAGCT 61.729 63.158 0.00 0.00 0.00 4.24
665 764 2.037620 ATCCGCCATCTCCTCACAGC 62.038 60.000 0.00 0.00 0.00 4.40
666 765 0.249784 CATCCGCCATCTCCTCACAG 60.250 60.000 0.00 0.00 0.00 3.66
667 766 1.825341 CATCCGCCATCTCCTCACA 59.175 57.895 0.00 0.00 0.00 3.58
668 767 1.596477 GCATCCGCCATCTCCTCAC 60.596 63.158 0.00 0.00 0.00 3.51
669 768 2.824546 GCATCCGCCATCTCCTCA 59.175 61.111 0.00 0.00 0.00 3.86
670 769 2.356793 CGCATCCGCCATCTCCTC 60.357 66.667 0.00 0.00 33.11 3.71
671 770 2.839632 TCGCATCCGCCATCTCCT 60.840 61.111 0.00 0.00 33.11 3.69
672 771 2.356793 CTCGCATCCGCCATCTCC 60.357 66.667 0.00 0.00 33.11 3.71
673 772 2.164865 ATCCTCGCATCCGCCATCTC 62.165 60.000 0.00 0.00 33.11 2.75
674 773 2.212811 ATCCTCGCATCCGCCATCT 61.213 57.895 0.00 0.00 33.11 2.90
675 774 2.031516 CATCCTCGCATCCGCCATC 61.032 63.158 0.00 0.00 33.11 3.51
676 775 2.031616 CATCCTCGCATCCGCCAT 59.968 61.111 0.00 0.00 33.11 4.40
677 776 4.916293 GCATCCTCGCATCCGCCA 62.916 66.667 0.00 0.00 33.11 5.69
678 777 3.226429 TAGCATCCTCGCATCCGCC 62.226 63.158 0.00 0.00 33.11 6.13
679 778 2.024319 GTAGCATCCTCGCATCCGC 61.024 63.158 0.00 0.00 0.00 5.54
680 779 1.373497 GGTAGCATCCTCGCATCCG 60.373 63.158 0.00 0.00 0.00 4.18
681 780 0.320247 CTGGTAGCATCCTCGCATCC 60.320 60.000 0.00 0.00 0.00 3.51
682 781 0.676184 TCTGGTAGCATCCTCGCATC 59.324 55.000 0.00 0.00 0.00 3.91
683 782 0.678395 CTCTGGTAGCATCCTCGCAT 59.322 55.000 0.00 0.00 0.00 4.73
684 783 1.395045 CCTCTGGTAGCATCCTCGCA 61.395 60.000 0.00 0.00 0.00 5.10
685 784 1.109920 TCCTCTGGTAGCATCCTCGC 61.110 60.000 0.00 0.00 0.00 5.03
686 785 0.958091 CTCCTCTGGTAGCATCCTCG 59.042 60.000 0.00 0.00 0.00 4.63
687 786 2.373335 TCTCCTCTGGTAGCATCCTC 57.627 55.000 0.00 0.00 0.00 3.71
688 787 2.856760 TTCTCCTCTGGTAGCATCCT 57.143 50.000 0.00 0.00 0.00 3.24
689 788 3.737850 CATTTCTCCTCTGGTAGCATCC 58.262 50.000 0.00 0.00 0.00 3.51
690 789 3.137533 GCATTTCTCCTCTGGTAGCATC 58.862 50.000 0.00 0.00 0.00 3.91
691 790 2.507058 TGCATTTCTCCTCTGGTAGCAT 59.493 45.455 0.00 0.00 0.00 3.79
692 791 1.908619 TGCATTTCTCCTCTGGTAGCA 59.091 47.619 0.00 0.00 0.00 3.49
693 792 2.698855 TGCATTTCTCCTCTGGTAGC 57.301 50.000 0.00 0.00 0.00 3.58
694 793 4.272018 CGAATTGCATTTCTCCTCTGGTAG 59.728 45.833 16.85 0.00 0.00 3.18
695 794 4.081142 TCGAATTGCATTTCTCCTCTGGTA 60.081 41.667 16.85 0.00 0.00 3.25
696 795 3.012518 CGAATTGCATTTCTCCTCTGGT 58.987 45.455 16.85 0.00 0.00 4.00
697 796 3.273434 TCGAATTGCATTTCTCCTCTGG 58.727 45.455 16.85 2.81 0.00 3.86
698 797 4.952262 TTCGAATTGCATTTCTCCTCTG 57.048 40.909 16.85 3.40 0.00 3.35
699 798 6.521151 AAATTCGAATTGCATTTCTCCTCT 57.479 33.333 23.38 0.76 0.00 3.69
700 799 6.808212 TGAAAATTCGAATTGCATTTCTCCTC 59.192 34.615 23.38 4.33 0.00 3.71
701 800 6.690530 TGAAAATTCGAATTGCATTTCTCCT 58.309 32.000 23.38 1.48 0.00 3.69
702 801 6.949578 TGAAAATTCGAATTGCATTTCTCC 57.050 33.333 23.38 4.21 0.00 3.71
703 802 9.815936 AAAATGAAAATTCGAATTGCATTTCTC 57.184 25.926 35.10 21.42 39.99 2.87
704 803 9.601971 CAAAATGAAAATTCGAATTGCATTTCT 57.398 25.926 35.10 28.00 39.99 2.52
705 804 8.842777 CCAAAATGAAAATTCGAATTGCATTTC 58.157 29.630 35.10 28.36 39.99 2.17
706 805 7.808856 CCCAAAATGAAAATTCGAATTGCATTT 59.191 29.630 32.81 32.81 41.16 2.32
707 806 7.174599 TCCCAAAATGAAAATTCGAATTGCATT 59.825 29.630 28.58 28.58 36.56 3.56
708 807 6.654161 TCCCAAAATGAAAATTCGAATTGCAT 59.346 30.769 23.38 23.36 0.00 3.96
709 808 5.994054 TCCCAAAATGAAAATTCGAATTGCA 59.006 32.000 23.38 22.33 0.00 4.08
710 809 6.479095 TCCCAAAATGAAAATTCGAATTGC 57.521 33.333 23.38 17.98 0.00 3.56
711 810 9.369904 ACTATCCCAAAATGAAAATTCGAATTG 57.630 29.630 23.38 10.13 0.00 2.32
712 811 9.942850 AACTATCCCAAAATGAAAATTCGAATT 57.057 25.926 17.60 17.60 0.00 2.17
713 812 9.942850 AAACTATCCCAAAATGAAAATTCGAAT 57.057 25.926 4.39 4.39 0.00 3.34
714 813 9.771534 AAAACTATCCCAAAATGAAAATTCGAA 57.228 25.926 0.00 0.00 0.00 3.71
715 814 9.202273 CAAAACTATCCCAAAATGAAAATTCGA 57.798 29.630 0.00 0.00 0.00 3.71
716 815 8.442384 CCAAAACTATCCCAAAATGAAAATTCG 58.558 33.333 0.00 0.00 0.00 3.34
717 816 8.729756 CCCAAAACTATCCCAAAATGAAAATTC 58.270 33.333 0.00 0.00 0.00 2.17
827 928 1.019278 CGTGCTCGCCACTAACCAAT 61.019 55.000 0.00 0.00 42.42 3.16
830 931 2.092882 GTCGTGCTCGCCACTAACC 61.093 63.158 2.69 0.00 42.42 2.85
879 1001 2.691011 GTCTAGCAGTAGGAACAGGAGG 59.309 54.545 0.00 0.00 0.00 4.30
895 1017 2.163412 GCCATCGGCTGATCTAGTCTAG 59.837 54.545 4.63 0.00 46.69 2.43
896 1018 2.163509 GCCATCGGCTGATCTAGTCTA 58.836 52.381 4.63 0.00 46.69 2.59
897 1019 0.965439 GCCATCGGCTGATCTAGTCT 59.035 55.000 4.63 0.00 46.69 3.24
1324 1465 4.541648 CGGGGAGGAGGGATCCGT 62.542 72.222 6.67 6.67 37.75 4.69
1597 1772 2.680352 GAGCACCTGGTCGGAGGA 60.680 66.667 0.00 0.00 36.51 3.71
1707 1882 1.672356 CTCCTTTGTGACCTGCCGG 60.672 63.158 0.00 0.00 0.00 6.13
1727 1902 2.417924 GCTTCAGCTCGAGAAATGGAGA 60.418 50.000 18.75 0.00 38.21 3.71
1768 1943 3.037549 AGCTAGGACCTGAATTGGAGAG 58.962 50.000 3.53 0.00 0.00 3.20
1772 1947 2.026822 ACACAGCTAGGACCTGAATTGG 60.027 50.000 3.53 0.00 34.47 3.16
2373 2550 7.928167 CAGCATCAATAAGATACTGACACCTAA 59.072 37.037 0.10 0.00 46.72 2.69
2489 2672 3.767902 TTCCCCAAATCAAGGCAAAAG 57.232 42.857 0.00 0.00 0.00 2.27
2570 2753 9.841295 TGAACTGGAATAAAAACACTACTAACT 57.159 29.630 0.00 0.00 0.00 2.24
2590 2773 7.195646 ACACATTACATTGAACAACTGAACTG 58.804 34.615 0.00 0.00 0.00 3.16
2699 2882 4.277174 CGAGAGACAGCTACAATAGACCAT 59.723 45.833 0.00 0.00 0.00 3.55
2709 2892 0.528470 AACTGCCGAGAGACAGCTAC 59.472 55.000 0.00 0.00 37.42 3.58
2741 2924 5.962433 TCGAAAAGGAACATCACTACCTAG 58.038 41.667 0.00 0.00 32.06 3.02
2791 2974 7.937700 TTTTCCTCTAATAGTGGATGGAGAT 57.062 36.000 11.38 0.00 37.68 2.75
2792 2975 7.937700 ATTTTCCTCTAATAGTGGATGGAGA 57.062 36.000 11.38 0.00 37.68 3.71
2820 3003 9.131791 TGTTTGACTGCACTATATAGTCTATCA 57.868 33.333 12.62 10.92 41.01 2.15
2821 3004 9.619316 CTGTTTGACTGCACTATATAGTCTATC 57.381 37.037 12.62 8.72 41.01 2.08
2822 3005 8.085296 GCTGTTTGACTGCACTATATAGTCTAT 58.915 37.037 12.62 0.00 41.83 1.98
2829 3012 8.424918 ACTAATAGCTGTTTGACTGCACTATAT 58.575 33.333 11.27 0.05 44.20 0.86
2830 3013 7.782049 ACTAATAGCTGTTTGACTGCACTATA 58.218 34.615 11.27 0.00 44.20 1.31
2831 3014 6.644347 ACTAATAGCTGTTTGACTGCACTAT 58.356 36.000 11.27 0.91 44.20 2.12
2832 3015 6.037786 ACTAATAGCTGTTTGACTGCACTA 57.962 37.500 11.27 0.00 44.20 2.74
2833 3016 4.899502 ACTAATAGCTGTTTGACTGCACT 58.100 39.130 11.27 0.12 44.20 4.40
2834 3017 4.690748 TGACTAATAGCTGTTTGACTGCAC 59.309 41.667 11.27 0.00 44.20 4.57
2835 3018 4.690748 GTGACTAATAGCTGTTTGACTGCA 59.309 41.667 11.27 0.00 44.20 4.41
2836 3019 4.932200 AGTGACTAATAGCTGTTTGACTGC 59.068 41.667 11.27 2.23 42.43 4.40
2837 3020 6.159293 TCAGTGACTAATAGCTGTTTGACTG 58.841 40.000 11.27 13.54 0.00 3.51
2838 3021 6.346477 TCAGTGACTAATAGCTGTTTGACT 57.654 37.500 11.27 3.01 0.00 3.41
2839 3022 5.578727 CCTCAGTGACTAATAGCTGTTTGAC 59.421 44.000 11.27 6.00 0.00 3.18
2840 3023 5.480422 TCCTCAGTGACTAATAGCTGTTTGA 59.520 40.000 11.27 2.75 0.00 2.69
2841 3024 5.724328 TCCTCAGTGACTAATAGCTGTTTG 58.276 41.667 0.00 1.62 0.00 2.93
2842 3025 5.482175 ACTCCTCAGTGACTAATAGCTGTTT 59.518 40.000 0.00 0.00 0.00 2.83
2843 3026 5.020132 ACTCCTCAGTGACTAATAGCTGTT 58.980 41.667 0.04 0.04 0.00 3.16
2844 3027 4.605183 ACTCCTCAGTGACTAATAGCTGT 58.395 43.478 0.00 0.00 0.00 4.40
2845 3028 5.590663 TGTACTCCTCAGTGACTAATAGCTG 59.409 44.000 0.00 0.00 33.62 4.24
2846 3029 5.591067 GTGTACTCCTCAGTGACTAATAGCT 59.409 44.000 0.00 0.00 33.62 3.32
2847 3030 5.591067 AGTGTACTCCTCAGTGACTAATAGC 59.409 44.000 0.00 0.00 33.62 2.97
2848 3031 7.201750 GGAAGTGTACTCCTCAGTGACTAATAG 60.202 44.444 0.00 0.00 33.62 1.73
2849 3032 6.602406 GGAAGTGTACTCCTCAGTGACTAATA 59.398 42.308 0.00 0.00 33.62 0.98
2850 3033 5.419471 GGAAGTGTACTCCTCAGTGACTAAT 59.581 44.000 0.00 0.00 33.62 1.73
2851 3034 4.765856 GGAAGTGTACTCCTCAGTGACTAA 59.234 45.833 0.00 0.00 33.62 2.24
2852 3035 4.333690 GGAAGTGTACTCCTCAGTGACTA 58.666 47.826 0.00 0.00 33.62 2.59
2853 3036 3.158676 GGAAGTGTACTCCTCAGTGACT 58.841 50.000 0.00 0.00 33.62 3.41
2854 3037 2.095161 CGGAAGTGTACTCCTCAGTGAC 60.095 54.545 0.00 0.00 33.62 3.67
2855 3038 2.160205 CGGAAGTGTACTCCTCAGTGA 58.840 52.381 0.00 0.00 33.62 3.41
2856 3039 1.887198 ACGGAAGTGTACTCCTCAGTG 59.113 52.381 0.00 0.00 46.97 3.66
2857 3040 2.289592 ACGGAAGTGTACTCCTCAGT 57.710 50.000 0.00 0.00 46.97 3.41
2870 3053 5.622770 AAGGTTTTATTGTAGCACGGAAG 57.377 39.130 0.00 0.00 0.00 3.46
2871 3054 5.996513 TGTAAGGTTTTATTGTAGCACGGAA 59.003 36.000 0.00 0.00 0.00 4.30
2872 3055 5.549347 TGTAAGGTTTTATTGTAGCACGGA 58.451 37.500 0.00 0.00 0.00 4.69
2873 3056 5.864986 CTGTAAGGTTTTATTGTAGCACGG 58.135 41.667 0.00 0.00 0.00 4.94
2890 3073 3.244215 TGCCAACTGAGAAGTCCTGTAAG 60.244 47.826 0.00 0.00 0.00 2.34
2891 3074 2.703536 TGCCAACTGAGAAGTCCTGTAA 59.296 45.455 0.00 0.00 0.00 2.41
2892 3075 2.037251 GTGCCAACTGAGAAGTCCTGTA 59.963 50.000 0.00 0.00 0.00 2.74
2893 3076 1.131638 TGCCAACTGAGAAGTCCTGT 58.868 50.000 0.00 0.00 0.00 4.00
2894 3077 1.517242 GTGCCAACTGAGAAGTCCTG 58.483 55.000 0.00 0.00 0.00 3.86
2895 3078 0.398318 GGTGCCAACTGAGAAGTCCT 59.602 55.000 0.00 0.00 0.00 3.85
2896 3079 0.108585 TGGTGCCAACTGAGAAGTCC 59.891 55.000 0.00 0.00 0.00 3.85
2897 3080 1.202698 AGTGGTGCCAACTGAGAAGTC 60.203 52.381 0.00 0.00 0.00 3.01
2898 3081 0.839946 AGTGGTGCCAACTGAGAAGT 59.160 50.000 0.00 0.00 0.00 3.01
2899 3082 2.839486 TAGTGGTGCCAACTGAGAAG 57.161 50.000 0.00 0.00 0.00 2.85
2900 3083 6.524734 CATATATAGTGGTGCCAACTGAGAA 58.475 40.000 0.00 0.00 0.00 2.87
2901 3084 5.511373 GCATATATAGTGGTGCCAACTGAGA 60.511 44.000 0.00 0.00 0.00 3.27
2902 3085 4.692625 GCATATATAGTGGTGCCAACTGAG 59.307 45.833 0.00 0.00 0.00 3.35
2903 3086 4.641396 GCATATATAGTGGTGCCAACTGA 58.359 43.478 0.00 0.00 0.00 3.41
2910 3093 2.762535 ACCGGCATATATAGTGGTGC 57.237 50.000 0.00 0.00 36.88 5.01
2911 3094 4.894784 AGAAACCGGCATATATAGTGGTG 58.105 43.478 0.00 0.00 0.00 4.17
2912 3095 4.321750 CGAGAAACCGGCATATATAGTGGT 60.322 45.833 0.00 0.00 0.00 4.16
2913 3096 4.082408 TCGAGAAACCGGCATATATAGTGG 60.082 45.833 0.00 0.00 0.00 4.00
2914 3097 4.857588 GTCGAGAAACCGGCATATATAGTG 59.142 45.833 0.00 0.00 33.83 2.74
2915 3098 4.765856 AGTCGAGAAACCGGCATATATAGT 59.234 41.667 0.00 0.00 36.49 2.12
2916 3099 5.312120 AGTCGAGAAACCGGCATATATAG 57.688 43.478 0.00 0.00 36.49 1.31
2917 3100 4.157289 GGAGTCGAGAAACCGGCATATATA 59.843 45.833 0.00 0.00 36.49 0.86
2918 3101 3.056749 GGAGTCGAGAAACCGGCATATAT 60.057 47.826 0.00 0.00 36.49 0.86
2919 3102 2.295349 GGAGTCGAGAAACCGGCATATA 59.705 50.000 0.00 0.00 36.49 0.86
2920 3103 1.068741 GGAGTCGAGAAACCGGCATAT 59.931 52.381 0.00 0.00 36.49 1.78
2921 3104 0.458669 GGAGTCGAGAAACCGGCATA 59.541 55.000 0.00 0.00 36.49 3.14
2922 3105 1.218316 GGAGTCGAGAAACCGGCAT 59.782 57.895 0.00 0.00 36.49 4.40
2923 3106 1.874345 GAGGAGTCGAGAAACCGGCA 61.874 60.000 0.00 0.00 36.49 5.69
2924 3107 1.153804 GAGGAGTCGAGAAACCGGC 60.154 63.158 0.00 0.00 0.00 6.13
2925 3108 0.109226 GTGAGGAGTCGAGAAACCGG 60.109 60.000 0.00 0.00 0.00 5.28
2926 3109 0.882474 AGTGAGGAGTCGAGAAACCG 59.118 55.000 0.00 0.00 0.00 4.44
2946 3129 5.568620 ATCTGGATGGTATGGTAAAGGAC 57.431 43.478 0.00 0.00 0.00 3.85
2959 3142 3.640498 TCTCTCAGTAGCAATCTGGATGG 59.360 47.826 0.00 0.00 34.15 3.51
2987 3170 4.154942 ACTGCTTTGGAATCTGGATGTTT 58.845 39.130 0.00 0.00 0.00 2.83
2989 3172 3.446442 ACTGCTTTGGAATCTGGATGT 57.554 42.857 0.00 0.00 0.00 3.06
2990 3173 3.881688 CCTACTGCTTTGGAATCTGGATG 59.118 47.826 0.00 0.00 0.00 3.51
3007 3190 4.484912 ACCAGAACTCAGACTTTCCTACT 58.515 43.478 0.00 0.00 0.00 2.57
3008 3191 4.281182 TGACCAGAACTCAGACTTTCCTAC 59.719 45.833 0.00 0.00 0.00 3.18
3009 3192 4.281182 GTGACCAGAACTCAGACTTTCCTA 59.719 45.833 0.00 0.00 0.00 2.94
3010 3193 3.070302 GTGACCAGAACTCAGACTTTCCT 59.930 47.826 0.00 0.00 0.00 3.36
3011 3194 3.181465 TGTGACCAGAACTCAGACTTTCC 60.181 47.826 0.00 0.00 0.00 3.13
3012 3195 4.060038 TGTGACCAGAACTCAGACTTTC 57.940 45.455 0.00 0.00 0.00 2.62
3013 3196 4.162320 TCTTGTGACCAGAACTCAGACTTT 59.838 41.667 0.00 0.00 0.00 2.66
3014 3197 3.706594 TCTTGTGACCAGAACTCAGACTT 59.293 43.478 0.00 0.00 0.00 3.01
3015 3198 3.300388 TCTTGTGACCAGAACTCAGACT 58.700 45.455 0.00 0.00 0.00 3.24
3016 3199 3.319405 TCTCTTGTGACCAGAACTCAGAC 59.681 47.826 0.00 0.00 0.00 3.51
3017 3200 3.566351 TCTCTTGTGACCAGAACTCAGA 58.434 45.455 0.00 0.00 0.00 3.27
3022 3205 4.023707 CCATGTTTCTCTTGTGACCAGAAC 60.024 45.833 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.