Multiple sequence alignment - TraesCS5D01G351500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G351500 chr5D 100.000 2426 0 0 1 2426 435236648 435239073 0.000000e+00 4481
1 TraesCS5D01G351500 chr5D 98.211 559 10 0 1868 2426 229936093 229936651 0.000000e+00 977
2 TraesCS5D01G351500 chr5D 97.345 565 13 2 1862 2426 441514966 441514404 0.000000e+00 959
3 TraesCS5D01G351500 chr5D 85.792 915 82 23 706 1614 434322890 434323762 0.000000e+00 926
4 TraesCS5D01G351500 chr5D 79.026 1273 157 51 399 1620 434403464 434402251 0.000000e+00 771
5 TraesCS5D01G351500 chr5D 80.274 877 139 21 709 1571 434331056 434331912 4.400000e-177 630
6 TraesCS5D01G351500 chr5D 79.674 797 124 23 792 1571 434382263 434381488 7.630000e-150 540
7 TraesCS5D01G351500 chr5D 88.085 235 23 5 1630 1864 434323829 434324058 8.550000e-70 274
8 TraesCS5D01G351500 chr5D 78.412 403 57 16 640 1028 434392172 434391786 4.030000e-58 235
9 TraesCS5D01G351500 chr5B 88.593 1315 102 16 273 1571 527061503 527060221 0.000000e+00 1554
10 TraesCS5D01G351500 chr5B 93.123 887 54 6 980 1864 527058956 527058075 0.000000e+00 1293
11 TraesCS5D01G351500 chr5B 87.914 1026 83 22 574 1569 528524299 528525313 0.000000e+00 1170
12 TraesCS5D01G351500 chr5B 92.456 517 29 4 1349 1864 528537969 528538476 0.000000e+00 730
13 TraesCS5D01G351500 chr5B 91.391 151 10 3 1714 1864 527064279 527064132 1.140000e-48 204
14 TraesCS5D01G351500 chr5A 83.657 1646 144 61 2 1571 549152796 549154392 0.000000e+00 1434
15 TraesCS5D01G351500 chr5A 89.154 544 55 4 971 1514 548240340 548239801 0.000000e+00 675
16 TraesCS5D01G351500 chr5A 80.000 320 44 10 714 1028 548229075 548228771 4.060000e-53 219
17 TraesCS5D01G351500 chr5A 88.199 161 17 2 1704 1864 548239122 548238964 8.850000e-45 191
18 TraesCS5D01G351500 chrUn 98.748 559 6 1 1869 2426 94074645 94074087 0.000000e+00 992
19 TraesCS5D01G351500 chr2D 98.746 558 7 0 1869 2426 520594301 520593744 0.000000e+00 992
20 TraesCS5D01G351500 chr2D 97.670 558 12 1 1869 2426 1708797 1709353 0.000000e+00 957
21 TraesCS5D01G351500 chr2D 97.491 558 14 0 1869 2426 476979914 476979357 0.000000e+00 953
22 TraesCS5D01G351500 chr1D 97.350 566 14 1 1861 2426 26189900 26189336 0.000000e+00 961
23 TraesCS5D01G351500 chr1D 97.674 559 13 0 1868 2426 319541309 319541867 0.000000e+00 961
24 TraesCS5D01G351500 chr1D 97.842 556 11 1 1871 2426 458742777 458742223 0.000000e+00 959


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G351500 chr5D 435236648 435239073 2425 False 4481 4481 100.000000 1 2426 1 chr5D.!!$F3 2425
1 TraesCS5D01G351500 chr5D 229936093 229936651 558 False 977 977 98.211000 1868 2426 1 chr5D.!!$F1 558
2 TraesCS5D01G351500 chr5D 441514404 441514966 562 True 959 959 97.345000 1862 2426 1 chr5D.!!$R4 564
3 TraesCS5D01G351500 chr5D 434402251 434403464 1213 True 771 771 79.026000 399 1620 1 chr5D.!!$R3 1221
4 TraesCS5D01G351500 chr5D 434331056 434331912 856 False 630 630 80.274000 709 1571 1 chr5D.!!$F2 862
5 TraesCS5D01G351500 chr5D 434322890 434324058 1168 False 600 926 86.938500 706 1864 2 chr5D.!!$F4 1158
6 TraesCS5D01G351500 chr5D 434381488 434382263 775 True 540 540 79.674000 792 1571 1 chr5D.!!$R1 779
7 TraesCS5D01G351500 chr5B 528524299 528525313 1014 False 1170 1170 87.914000 574 1569 1 chr5B.!!$F1 995
8 TraesCS5D01G351500 chr5B 527058075 527064279 6204 True 1017 1554 91.035667 273 1864 3 chr5B.!!$R1 1591
9 TraesCS5D01G351500 chr5B 528537969 528538476 507 False 730 730 92.456000 1349 1864 1 chr5B.!!$F2 515
10 TraesCS5D01G351500 chr5A 549152796 549154392 1596 False 1434 1434 83.657000 2 1571 1 chr5A.!!$F1 1569
11 TraesCS5D01G351500 chr5A 548238964 548240340 1376 True 433 675 88.676500 971 1864 2 chr5A.!!$R2 893
12 TraesCS5D01G351500 chrUn 94074087 94074645 558 True 992 992 98.748000 1869 2426 1 chrUn.!!$R1 557
13 TraesCS5D01G351500 chr2D 520593744 520594301 557 True 992 992 98.746000 1869 2426 1 chr2D.!!$R2 557
14 TraesCS5D01G351500 chr2D 1708797 1709353 556 False 957 957 97.670000 1869 2426 1 chr2D.!!$F1 557
15 TraesCS5D01G351500 chr2D 476979357 476979914 557 True 953 953 97.491000 1869 2426 1 chr2D.!!$R1 557
16 TraesCS5D01G351500 chr1D 26189336 26189900 564 True 961 961 97.350000 1861 2426 1 chr1D.!!$R1 565
17 TraesCS5D01G351500 chr1D 319541309 319541867 558 False 961 961 97.674000 1868 2426 1 chr1D.!!$F1 558
18 TraesCS5D01G351500 chr1D 458742223 458742777 554 True 959 959 97.842000 1871 2426 1 chr1D.!!$R2 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 160 0.033504 ACGAGTGCCACGACATTCTT 59.966 50.0 0.00 0.0 34.7 2.52 F
555 3093 0.033991 AGAAGCGCCTAGAGAGTGGA 60.034 55.0 2.29 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 3822 0.039256 TCTTGCCATCGCTTGCAAAC 60.039 50.0 0.0 0.0 45.94 2.93 R
1914 6887 0.417841 AAGGAGGGAAGCACTAGGGA 59.582 55.0 0.0 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.666237 GCTAATTAAGCCAAGCACTGAAG 58.334 43.478 0.00 0.00 46.25 3.02
43 44 2.185004 TAAGCCAAGCACTGAAGTCC 57.815 50.000 0.00 0.00 0.00 3.85
63 64 1.889170 CCAAGGAAAGAGAGCCCAAAC 59.111 52.381 0.00 0.00 0.00 2.93
71 72 2.264455 AGAGAGCCCAAACACATCTCT 58.736 47.619 0.00 0.00 41.40 3.10
77 78 5.416952 AGAGCCCAAACACATCTCTAAAATG 59.583 40.000 0.00 0.00 32.86 2.32
78 79 5.079643 AGCCCAAACACATCTCTAAAATGT 58.920 37.500 0.00 0.00 37.85 2.71
79 80 5.183904 AGCCCAAACACATCTCTAAAATGTC 59.816 40.000 0.00 0.00 35.19 3.06
80 81 5.183904 GCCCAAACACATCTCTAAAATGTCT 59.816 40.000 0.00 0.00 35.19 3.41
81 82 6.374333 GCCCAAACACATCTCTAAAATGTCTA 59.626 38.462 0.00 0.00 35.19 2.59
82 83 7.626452 GCCCAAACACATCTCTAAAATGTCTAC 60.626 40.741 0.00 0.00 35.19 2.59
83 84 7.390440 CCCAAACACATCTCTAAAATGTCTACA 59.610 37.037 0.00 0.00 35.19 2.74
85 86 9.817365 CAAACACATCTCTAAAATGTCTACAAG 57.183 33.333 0.00 0.00 35.19 3.16
86 87 9.561069 AAACACATCTCTAAAATGTCTACAAGT 57.439 29.630 0.00 0.00 35.19 3.16
90 91 9.429359 ACATCTCTAAAATGTCTACAAGTTCAG 57.571 33.333 0.00 0.00 31.82 3.02
91 92 7.891183 TCTCTAAAATGTCTACAAGTTCAGC 57.109 36.000 0.00 0.00 0.00 4.26
92 93 6.874134 TCTCTAAAATGTCTACAAGTTCAGCC 59.126 38.462 0.00 0.00 0.00 4.85
94 95 6.995686 TCTAAAATGTCTACAAGTTCAGCCAA 59.004 34.615 0.00 0.00 0.00 4.52
95 96 6.463995 AAAATGTCTACAAGTTCAGCCAAA 57.536 33.333 0.00 0.00 0.00 3.28
97 98 5.695851 ATGTCTACAAGTTCAGCCAAAAG 57.304 39.130 0.00 0.00 0.00 2.27
98 99 3.882888 TGTCTACAAGTTCAGCCAAAAGG 59.117 43.478 0.00 0.00 0.00 3.11
100 101 4.762251 GTCTACAAGTTCAGCCAAAAGGAT 59.238 41.667 0.00 0.00 0.00 3.24
101 102 5.241728 GTCTACAAGTTCAGCCAAAAGGATT 59.758 40.000 0.00 0.00 0.00 3.01
102 103 4.326504 ACAAGTTCAGCCAAAAGGATTG 57.673 40.909 0.00 0.00 0.00 2.67
103 104 3.070015 ACAAGTTCAGCCAAAAGGATTGG 59.930 43.478 2.84 2.84 42.37 3.16
105 106 3.160269 AGTTCAGCCAAAAGGATTGGAG 58.840 45.455 11.26 3.09 42.06 3.86
106 107 3.157087 GTTCAGCCAAAAGGATTGGAGA 58.843 45.455 11.26 5.27 42.06 3.71
108 109 3.424703 TCAGCCAAAAGGATTGGAGAAG 58.575 45.455 11.26 0.00 42.06 2.85
109 110 2.494870 CAGCCAAAAGGATTGGAGAAGG 59.505 50.000 11.26 0.00 42.06 3.46
110 111 1.205655 GCCAAAAGGATTGGAGAAGGC 59.794 52.381 11.26 0.00 42.06 4.35
111 112 2.528564 CCAAAAGGATTGGAGAAGGCA 58.471 47.619 0.87 0.00 42.06 4.75
115 116 0.915364 AGGATTGGAGAAGGCAGGAC 59.085 55.000 0.00 0.00 0.00 3.85
116 117 0.620556 GGATTGGAGAAGGCAGGACA 59.379 55.000 0.00 0.00 0.00 4.02
118 119 2.087646 GATTGGAGAAGGCAGGACAAC 58.912 52.381 0.00 0.00 0.00 3.32
119 120 0.250295 TTGGAGAAGGCAGGACAACG 60.250 55.000 0.00 0.00 0.00 4.10
121 122 0.670854 GGAGAAGGCAGGACAACGAC 60.671 60.000 0.00 0.00 0.00 4.34
122 123 0.318762 GAGAAGGCAGGACAACGACT 59.681 55.000 0.00 0.00 0.00 4.18
125 126 0.468226 AAGGCAGGACAACGACTCAA 59.532 50.000 0.00 0.00 0.00 3.02
126 127 0.687354 AGGCAGGACAACGACTCAAT 59.313 50.000 0.00 0.00 0.00 2.57
128 129 0.798776 GCAGGACAACGACTCAATGG 59.201 55.000 0.00 0.00 0.00 3.16
129 130 0.798776 CAGGACAACGACTCAATGGC 59.201 55.000 0.00 0.00 0.00 4.40
135 136 3.489731 CGACTCAATGGCGTGCAT 58.510 55.556 0.00 0.00 43.40 3.96
136 137 1.061411 CGACTCAATGGCGTGCATG 59.939 57.895 0.09 0.09 43.40 4.06
137 138 1.638388 CGACTCAATGGCGTGCATGT 61.638 55.000 7.93 0.00 43.40 3.21
138 139 0.097674 GACTCAATGGCGTGCATGTC 59.902 55.000 2.79 2.79 0.00 3.06
139 140 1.308069 ACTCAATGGCGTGCATGTCC 61.308 55.000 8.30 10.03 0.00 4.02
140 141 1.303155 TCAATGGCGTGCATGTCCA 60.303 52.632 19.82 19.82 0.00 4.02
141 142 1.153978 CAATGGCGTGCATGTCCAC 60.154 57.895 19.91 5.03 31.94 4.02
147 148 2.863153 GTGCATGTCCACGAGTGC 59.137 61.111 0.00 0.00 38.05 4.40
148 149 2.358615 TGCATGTCCACGAGTGCC 60.359 61.111 0.00 0.00 36.79 5.01
149 150 2.358615 GCATGTCCACGAGTGCCA 60.359 61.111 0.00 0.00 0.00 4.92
150 151 2.680913 GCATGTCCACGAGTGCCAC 61.681 63.158 0.00 0.00 0.00 5.01
151 152 2.048222 ATGTCCACGAGTGCCACG 60.048 61.111 0.00 0.00 0.00 4.94
153 154 2.733593 GTCCACGAGTGCCACGAC 60.734 66.667 0.00 0.00 34.70 4.34
155 156 2.048222 CCACGAGTGCCACGACAT 60.048 61.111 0.00 0.00 34.70 3.06
156 157 1.667830 CCACGAGTGCCACGACATT 60.668 57.895 0.00 0.00 34.70 2.71
157 158 1.626654 CCACGAGTGCCACGACATTC 61.627 60.000 0.00 0.00 34.70 2.67
158 159 0.667487 CACGAGTGCCACGACATTCT 60.667 55.000 0.00 0.00 34.70 2.40
159 160 0.033504 ACGAGTGCCACGACATTCTT 59.966 50.000 0.00 0.00 34.70 2.52
160 161 1.271379 ACGAGTGCCACGACATTCTTA 59.729 47.619 0.00 0.00 34.70 2.10
164 165 4.565166 CGAGTGCCACGACATTCTTAATTA 59.435 41.667 0.00 0.00 0.00 1.40
165 166 5.276395 CGAGTGCCACGACATTCTTAATTAG 60.276 44.000 0.00 0.00 0.00 1.73
167 168 5.812642 AGTGCCACGACATTCTTAATTAGAG 59.187 40.000 0.00 0.00 33.51 2.43
168 169 5.810587 GTGCCACGACATTCTTAATTAGAGA 59.189 40.000 0.00 0.00 33.51 3.10
169 170 6.312918 GTGCCACGACATTCTTAATTAGAGAA 59.687 38.462 10.51 10.51 37.52 2.87
170 171 6.312918 TGCCACGACATTCTTAATTAGAGAAC 59.687 38.462 10.38 1.99 36.08 3.01
172 173 7.705325 GCCACGACATTCTTAATTAGAGAACTA 59.295 37.037 10.38 0.00 36.08 2.24
173 174 9.021863 CCACGACATTCTTAATTAGAGAACTAC 57.978 37.037 10.38 6.18 36.08 2.73
176 177 7.914346 CGACATTCTTAATTAGAGAACTACGGT 59.086 37.037 10.38 0.00 36.08 4.83
178 179 9.939802 ACATTCTTAATTAGAGAACTACGGTTT 57.060 29.630 10.38 0.00 36.08 3.27
181 182 8.992835 TCTTAATTAGAGAACTACGGTTTTCC 57.007 34.615 0.00 0.00 37.29 3.13
182 183 8.810041 TCTTAATTAGAGAACTACGGTTTTCCT 58.190 33.333 0.00 0.00 37.29 3.36
184 185 6.854091 ATTAGAGAACTACGGTTTTCCTCT 57.146 37.500 0.00 0.00 37.29 3.69
185 186 6.661304 TTAGAGAACTACGGTTTTCCTCTT 57.339 37.500 0.00 0.00 37.29 2.85
186 187 5.136816 AGAGAACTACGGTTTTCCTCTTC 57.863 43.478 0.00 0.00 37.29 2.87
190 191 4.950205 ACTACGGTTTTCCTCTTCTGAA 57.050 40.909 0.00 0.00 37.95 3.02
191 192 5.485209 ACTACGGTTTTCCTCTTCTGAAT 57.515 39.130 0.00 0.00 37.95 2.57
192 193 5.480205 ACTACGGTTTTCCTCTTCTGAATC 58.520 41.667 0.00 0.00 37.95 2.52
193 194 4.351874 ACGGTTTTCCTCTTCTGAATCA 57.648 40.909 0.00 0.00 37.95 2.57
195 196 5.316987 ACGGTTTTCCTCTTCTGAATCATT 58.683 37.500 0.00 0.00 37.95 2.57
196 197 5.412904 ACGGTTTTCCTCTTCTGAATCATTC 59.587 40.000 0.00 0.00 37.95 2.67
197 198 5.645497 CGGTTTTCCTCTTCTGAATCATTCT 59.355 40.000 0.00 0.00 37.95 2.40
198 199 6.402983 CGGTTTTCCTCTTCTGAATCATTCTG 60.403 42.308 0.00 0.00 37.95 3.02
199 200 6.656693 GGTTTTCCTCTTCTGAATCATTCTGA 59.343 38.462 2.93 2.93 35.19 3.27
200 201 7.175641 GGTTTTCCTCTTCTGAATCATTCTGAA 59.824 37.037 16.40 16.40 39.50 3.02
209 210 7.002250 TCTGAATCATTCTGAAGAACTGAGT 57.998 36.000 4.55 1.01 36.80 3.41
210 211 7.095910 TCTGAATCATTCTGAAGAACTGAGTC 58.904 38.462 16.90 16.90 37.29 3.36
212 213 5.752036 ATCATTCTGAAGAACTGAGTCCA 57.248 39.130 0.00 0.00 36.80 4.02
213 214 5.551305 TCATTCTGAAGAACTGAGTCCAA 57.449 39.130 0.00 0.00 36.80 3.53
214 215 5.928976 TCATTCTGAAGAACTGAGTCCAAA 58.071 37.500 0.00 0.00 36.80 3.28
215 216 6.537355 TCATTCTGAAGAACTGAGTCCAAAT 58.463 36.000 0.00 0.00 36.80 2.32
216 217 7.679783 TCATTCTGAAGAACTGAGTCCAAATA 58.320 34.615 0.00 0.00 36.80 1.40
217 218 7.604164 TCATTCTGAAGAACTGAGTCCAAATAC 59.396 37.037 0.00 0.00 36.80 1.89
220 221 6.931281 TCTGAAGAACTGAGTCCAAATACTTG 59.069 38.462 0.00 0.00 0.00 3.16
221 222 6.591935 TGAAGAACTGAGTCCAAATACTTGT 58.408 36.000 0.00 0.00 0.00 3.16
222 223 6.483307 TGAAGAACTGAGTCCAAATACTTGTG 59.517 38.462 0.00 0.00 0.00 3.33
223 224 5.930135 AGAACTGAGTCCAAATACTTGTGT 58.070 37.500 0.00 0.00 0.00 3.72
224 225 5.992217 AGAACTGAGTCCAAATACTTGTGTC 59.008 40.000 0.00 0.00 0.00 3.67
225 226 5.552870 ACTGAGTCCAAATACTTGTGTCT 57.447 39.130 0.00 0.00 0.00 3.41
226 227 5.300752 ACTGAGTCCAAATACTTGTGTCTG 58.699 41.667 0.00 0.00 0.00 3.51
227 228 5.070446 ACTGAGTCCAAATACTTGTGTCTGA 59.930 40.000 0.00 0.00 0.00 3.27
228 229 5.541845 TGAGTCCAAATACTTGTGTCTGAG 58.458 41.667 0.00 0.00 0.00 3.35
229 230 5.304357 TGAGTCCAAATACTTGTGTCTGAGA 59.696 40.000 0.00 0.00 0.00 3.27
232 233 6.483640 AGTCCAAATACTTGTGTCTGAGAAAC 59.516 38.462 0.00 0.00 0.00 2.78
233 234 5.763204 TCCAAATACTTGTGTCTGAGAAACC 59.237 40.000 0.00 0.00 0.00 3.27
234 235 5.048713 CCAAATACTTGTGTCTGAGAAACCC 60.049 44.000 0.00 0.00 0.00 4.11
235 236 4.974645 ATACTTGTGTCTGAGAAACCCA 57.025 40.909 0.00 0.00 0.00 4.51
236 237 3.644966 ACTTGTGTCTGAGAAACCCAA 57.355 42.857 0.00 0.00 0.00 4.12
237 238 3.279434 ACTTGTGTCTGAGAAACCCAAC 58.721 45.455 0.00 0.00 0.00 3.77
238 239 2.341846 TGTGTCTGAGAAACCCAACC 57.658 50.000 0.00 0.00 0.00 3.77
239 240 1.562008 TGTGTCTGAGAAACCCAACCA 59.438 47.619 0.00 0.00 0.00 3.67
242 243 4.141367 TGTGTCTGAGAAACCCAACCATAA 60.141 41.667 0.00 0.00 0.00 1.90
243 244 4.215613 GTGTCTGAGAAACCCAACCATAAC 59.784 45.833 0.00 0.00 0.00 1.89
244 245 3.435671 GTCTGAGAAACCCAACCATAACG 59.564 47.826 0.00 0.00 0.00 3.18
246 247 2.089201 GAGAAACCCAACCATAACGGG 58.911 52.381 0.00 0.00 46.22 5.28
261 262 1.514657 CGGGTAACGTCGCATCGAA 60.515 57.895 4.59 0.00 37.72 3.71
264 265 1.662122 GGGTAACGTCGCATCGAAATT 59.338 47.619 4.59 0.00 37.72 1.82
266 267 2.093152 GGTAACGTCGCATCGAAATTGT 59.907 45.455 4.59 0.00 37.72 2.71
267 268 2.961522 AACGTCGCATCGAAATTGTT 57.038 40.000 4.59 0.00 37.72 2.83
268 269 4.201608 GGTAACGTCGCATCGAAATTGTTA 60.202 41.667 4.59 0.00 37.72 2.41
269 270 4.593597 AACGTCGCATCGAAATTGTTAT 57.406 36.364 4.59 0.00 37.72 1.89
271 272 2.708962 CGTCGCATCGAAATTGTTATGC 59.291 45.455 8.40 8.40 41.00 3.14
273 274 4.282068 GTCGCATCGAAATTGTTATGCAT 58.718 39.130 3.79 3.79 43.86 3.96
274 275 5.439828 GTCGCATCGAAATTGTTATGCATA 58.560 37.500 1.16 1.16 43.86 3.14
275 276 5.336990 GTCGCATCGAAATTGTTATGCATAC 59.663 40.000 5.74 2.77 43.86 2.39
276 277 5.007136 TCGCATCGAAATTGTTATGCATACA 59.993 36.000 5.74 5.46 43.86 2.29
277 278 5.852755 CGCATCGAAATTGTTATGCATACAT 59.147 36.000 5.74 0.00 43.86 2.29
278 279 6.031729 CGCATCGAAATTGTTATGCATACATC 59.968 38.462 5.74 1.07 43.86 3.06
279 280 7.080099 GCATCGAAATTGTTATGCATACATCT 58.920 34.615 5.74 0.00 43.30 2.90
280 281 7.060289 GCATCGAAATTGTTATGCATACATCTG 59.940 37.037 5.74 1.33 43.30 2.90
281 282 6.429624 TCGAAATTGTTATGCATACATCTGC 58.570 36.000 5.74 0.00 42.62 4.26
282 283 6.260714 TCGAAATTGTTATGCATACATCTGCT 59.739 34.615 5.74 0.00 42.75 4.24
284 285 8.069574 CGAAATTGTTATGCATACATCTGCTTA 58.930 33.333 5.74 0.00 42.75 3.09
285 286 9.390795 GAAATTGTTATGCATACATCTGCTTAG 57.609 33.333 5.74 0.00 42.75 2.18
288 2794 6.581712 TGTTATGCATACATCTGCTTAGTCA 58.418 36.000 5.74 0.00 42.75 3.41
291 2797 5.011431 TATGCATACATCTGCTTAGTCAGCT 59.989 40.000 1.16 0.00 42.54 4.24
307 2813 9.330063 CTTAGTCAGCTTGGAAATGTGATATAA 57.670 33.333 0.00 0.00 0.00 0.98
331 2838 2.687935 GCCACTTTCAGAGGACACAAAA 59.312 45.455 0.00 0.00 0.00 2.44
333 2840 3.316308 CCACTTTCAGAGGACACAAAAGG 59.684 47.826 0.00 0.00 32.53 3.11
334 2841 3.947834 CACTTTCAGAGGACACAAAAGGT 59.052 43.478 0.00 0.00 32.53 3.50
357 2870 3.375642 GCTTCAGAACAAGTTTGCTTCC 58.624 45.455 0.00 0.00 31.49 3.46
361 2874 3.627577 TCAGAACAAGTTTGCTTCCTGTC 59.372 43.478 0.00 0.00 31.49 3.51
362 2875 3.378112 CAGAACAAGTTTGCTTCCTGTCA 59.622 43.478 0.00 0.00 31.49 3.58
363 2876 4.037208 CAGAACAAGTTTGCTTCCTGTCAT 59.963 41.667 0.00 0.00 31.49 3.06
364 2877 3.996150 ACAAGTTTGCTTCCTGTCATG 57.004 42.857 0.00 0.00 31.49 3.07
365 2878 3.290710 ACAAGTTTGCTTCCTGTCATGT 58.709 40.909 0.00 0.00 31.49 3.21
366 2879 4.460263 ACAAGTTTGCTTCCTGTCATGTA 58.540 39.130 0.00 0.00 31.49 2.29
394 2907 3.840666 ACTGTACCCAAGAGATGTCATGT 59.159 43.478 0.00 0.00 0.00 3.21
396 2909 5.105310 ACTGTACCCAAGAGATGTCATGTAC 60.105 44.000 0.00 0.00 0.00 2.90
397 2910 5.023452 TGTACCCAAGAGATGTCATGTACT 58.977 41.667 0.00 0.00 0.00 2.73
440 2955 7.352079 TCAAACAGATCATGTGCTAGATAGA 57.648 36.000 0.00 0.00 43.00 1.98
507 3026 2.444624 CGGGTGCATGAACGACTCG 61.445 63.158 0.00 0.00 0.00 4.18
508 3027 2.740714 GGGTGCATGAACGACTCGC 61.741 63.158 0.00 0.00 0.00 5.03
553 3091 1.748493 AGAAGAAGCGCCTAGAGAGTG 59.252 52.381 2.29 0.00 0.00 3.51
554 3092 0.820871 AAGAAGCGCCTAGAGAGTGG 59.179 55.000 2.29 0.00 0.00 4.00
555 3093 0.033991 AGAAGCGCCTAGAGAGTGGA 60.034 55.000 2.29 0.00 0.00 4.02
556 3094 0.818296 GAAGCGCCTAGAGAGTGGAA 59.182 55.000 2.29 0.00 0.00 3.53
557 3095 0.533032 AAGCGCCTAGAGAGTGGAAC 59.467 55.000 2.29 0.00 0.00 3.62
558 3096 1.142097 GCGCCTAGAGAGTGGAACC 59.858 63.158 0.00 0.00 37.80 3.62
559 3097 1.605058 GCGCCTAGAGAGTGGAACCA 61.605 60.000 0.00 0.00 37.80 3.67
560 3098 0.895530 CGCCTAGAGAGTGGAACCAA 59.104 55.000 0.00 0.00 37.80 3.67
561 3099 1.482593 CGCCTAGAGAGTGGAACCAAT 59.517 52.381 0.00 0.00 37.80 3.16
630 3168 1.374758 CCCTCGACTCCTTGCACAC 60.375 63.158 0.00 0.00 0.00 3.82
712 3278 4.790140 CGCAAATGATGAGAAAGCAACTAC 59.210 41.667 0.00 0.00 0.00 2.73
738 3304 2.104451 TCTGGCATGCACCAAACATTTT 59.896 40.909 21.36 0.00 39.86 1.82
801 3367 0.753848 TGCATGTGCTGATCCCATGG 60.754 55.000 4.14 4.14 42.66 3.66
802 3368 0.754217 GCATGTGCTGATCCCATGGT 60.754 55.000 11.73 0.00 37.14 3.55
934 3509 2.591571 TCACTTGATCAGCTCATCCG 57.408 50.000 0.00 0.00 32.72 4.18
935 3510 1.827344 TCACTTGATCAGCTCATCCGT 59.173 47.619 0.00 0.00 32.72 4.69
965 3540 5.138276 AGAATTGCAACATCCATAGCTCAT 58.862 37.500 0.00 0.00 0.00 2.90
1101 3687 6.060788 GGTATCAGCCAAAGAAGATCAAGAT 58.939 40.000 0.00 0.00 0.00 2.40
1108 3694 4.096311 CAAAGAAGATCAAGATTGCTGCG 58.904 43.478 0.00 0.00 0.00 5.18
1194 3780 0.251209 TGGAGTACCTCAGCACGACT 60.251 55.000 0.00 0.00 37.04 4.18
1212 3798 1.474879 ACTGTCTTTAGCGAGCTCCTC 59.525 52.381 8.47 0.00 0.00 3.71
1593 6073 1.506025 TATGGCCACCAGCAGTATGA 58.494 50.000 8.16 0.00 46.50 2.15
1594 6074 0.848735 ATGGCCACCAGCAGTATGAT 59.151 50.000 8.16 0.00 46.50 2.45
1595 6075 1.506025 TGGCCACCAGCAGTATGATA 58.494 50.000 0.00 0.00 46.50 2.15
1598 6078 1.808945 GCCACCAGCAGTATGATATGC 59.191 52.381 0.00 0.00 42.97 3.14
1599 6079 2.811504 GCCACCAGCAGTATGATATGCA 60.812 50.000 0.00 0.00 45.01 3.96
1600 6080 3.682696 CCACCAGCAGTATGATATGCAT 58.317 45.455 3.79 3.79 45.01 3.96
1602 6082 4.155462 CCACCAGCAGTATGATATGCATTC 59.845 45.833 3.54 3.15 45.01 2.67
1627 6534 9.496873 TCTTCTCTTAATTACATTTCCGTTTCA 57.503 29.630 0.00 0.00 0.00 2.69
1665 6628 7.080099 CAGAGAATACACAACAAGTTTCCATG 58.920 38.462 0.00 0.00 0.00 3.66
1769 6741 7.613022 GCCATTCTAATGATGAATCCTATGGAA 59.387 37.037 4.25 0.00 38.70 3.53
1865 6838 6.842280 AGGGTTTACTCCACAGGTTTTAATTT 59.158 34.615 0.00 0.00 0.00 1.82
1866 6839 6.926826 GGGTTTACTCCACAGGTTTTAATTTG 59.073 38.462 0.00 0.00 0.00 2.32
1914 6887 5.184864 TGCAACGGGAGAAACAAATTATCAT 59.815 36.000 0.00 0.00 30.65 2.45
2029 7002 6.987386 TGGAACCAATACAAAATTTCATCGT 58.013 32.000 0.00 0.00 0.00 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.867984 GCTCTCTTTCCTTGGGACTTCAG 60.868 52.174 0.00 0.00 0.00 3.02
37 38 2.616765 GGCTCTCTTTCCTTGGGACTTC 60.617 54.545 0.00 0.00 0.00 3.01
40 41 0.034960 GGGCTCTCTTTCCTTGGGAC 60.035 60.000 0.00 0.00 0.00 4.46
43 44 1.889170 GTTTGGGCTCTCTTTCCTTGG 59.111 52.381 0.00 0.00 0.00 3.61
63 64 9.208022 TGAACTTGTAGACATTTTAGAGATGTG 57.792 33.333 0.00 0.00 37.83 3.21
71 72 7.575414 TTTGGCTGAACTTGTAGACATTTTA 57.425 32.000 0.00 0.00 30.75 1.52
77 78 4.134563 TCCTTTTGGCTGAACTTGTAGAC 58.865 43.478 0.00 0.00 40.12 2.59
78 79 4.431416 TCCTTTTGGCTGAACTTGTAGA 57.569 40.909 0.00 0.00 40.12 2.59
79 80 5.464168 CAATCCTTTTGGCTGAACTTGTAG 58.536 41.667 0.00 0.00 40.12 2.74
80 81 4.280677 CCAATCCTTTTGGCTGAACTTGTA 59.719 41.667 0.00 0.00 40.12 2.41
81 82 3.070015 CCAATCCTTTTGGCTGAACTTGT 59.930 43.478 0.00 0.00 40.12 3.16
82 83 3.321682 TCCAATCCTTTTGGCTGAACTTG 59.678 43.478 0.00 0.00 39.38 3.16
83 84 3.575687 CTCCAATCCTTTTGGCTGAACTT 59.424 43.478 0.00 0.00 39.38 2.66
85 86 3.157087 TCTCCAATCCTTTTGGCTGAAC 58.843 45.455 0.00 0.00 39.38 3.18
86 87 3.524095 TCTCCAATCCTTTTGGCTGAA 57.476 42.857 0.00 0.00 39.38 3.02
90 91 1.205655 GCCTTCTCCAATCCTTTTGGC 59.794 52.381 0.00 0.00 39.38 4.52
91 92 2.494870 CTGCCTTCTCCAATCCTTTTGG 59.505 50.000 0.00 0.00 40.87 3.28
92 93 2.494870 CCTGCCTTCTCCAATCCTTTTG 59.505 50.000 0.00 0.00 0.00 2.44
94 95 1.995542 TCCTGCCTTCTCCAATCCTTT 59.004 47.619 0.00 0.00 0.00 3.11
95 96 1.283321 GTCCTGCCTTCTCCAATCCTT 59.717 52.381 0.00 0.00 0.00 3.36
97 98 0.620556 TGTCCTGCCTTCTCCAATCC 59.379 55.000 0.00 0.00 0.00 3.01
98 99 2.087646 GTTGTCCTGCCTTCTCCAATC 58.912 52.381 0.00 0.00 0.00 2.67
100 101 0.250295 CGTTGTCCTGCCTTCTCCAA 60.250 55.000 0.00 0.00 0.00 3.53
101 102 1.118965 TCGTTGTCCTGCCTTCTCCA 61.119 55.000 0.00 0.00 0.00 3.86
102 103 0.670854 GTCGTTGTCCTGCCTTCTCC 60.671 60.000 0.00 0.00 0.00 3.71
103 104 0.318762 AGTCGTTGTCCTGCCTTCTC 59.681 55.000 0.00 0.00 0.00 2.87
105 106 0.033504 TGAGTCGTTGTCCTGCCTTC 59.966 55.000 0.00 0.00 0.00 3.46
106 107 0.468226 TTGAGTCGTTGTCCTGCCTT 59.532 50.000 0.00 0.00 0.00 4.35
108 109 0.798776 CATTGAGTCGTTGTCCTGCC 59.201 55.000 0.00 0.00 0.00 4.85
109 110 0.798776 CCATTGAGTCGTTGTCCTGC 59.201 55.000 0.00 0.00 0.00 4.85
110 111 0.798776 GCCATTGAGTCGTTGTCCTG 59.201 55.000 0.00 0.00 0.00 3.86
111 112 0.670546 CGCCATTGAGTCGTTGTCCT 60.671 55.000 0.00 0.00 0.00 3.85
115 116 1.154413 GCACGCCATTGAGTCGTTG 60.154 57.895 0.00 0.00 33.84 4.10
116 117 0.955428 ATGCACGCCATTGAGTCGTT 60.955 50.000 0.00 0.00 33.84 3.85
118 119 1.061411 CATGCACGCCATTGAGTCG 59.939 57.895 0.00 0.00 29.71 4.18
119 120 0.097674 GACATGCACGCCATTGAGTC 59.902 55.000 0.00 0.00 29.71 3.36
121 122 1.307355 TGGACATGCACGCCATTGAG 61.307 55.000 0.00 0.00 29.71 3.02
122 123 1.303155 TGGACATGCACGCCATTGA 60.303 52.632 0.00 0.00 29.71 2.57
125 126 3.126879 CGTGGACATGCACGCCAT 61.127 61.111 12.98 0.00 37.99 4.40
126 127 4.306967 TCGTGGACATGCACGCCA 62.307 61.111 19.57 6.98 43.62 5.69
128 129 2.738521 ACTCGTGGACATGCACGC 60.739 61.111 19.57 5.96 43.62 5.34
129 130 3.015293 GCACTCGTGGACATGCACG 62.015 63.158 18.49 18.49 45.09 5.34
130 131 2.680913 GGCACTCGTGGACATGCAC 61.681 63.158 0.00 0.00 39.92 4.57
131 132 2.358615 GGCACTCGTGGACATGCA 60.359 61.111 0.00 0.00 39.92 3.96
132 133 2.358615 TGGCACTCGTGGACATGC 60.359 61.111 0.00 0.00 37.35 4.06
133 134 2.382746 CGTGGCACTCGTGGACATG 61.383 63.158 16.72 0.00 40.68 3.21
134 135 2.048222 CGTGGCACTCGTGGACAT 60.048 61.111 16.72 0.00 40.68 3.06
135 136 3.220658 TCGTGGCACTCGTGGACA 61.221 61.111 16.72 0.00 46.06 4.02
136 137 2.733593 GTCGTGGCACTCGTGGAC 60.734 66.667 16.72 11.17 46.06 4.02
137 138 2.094757 AATGTCGTGGCACTCGTGGA 62.095 55.000 16.72 1.76 46.06 4.02
138 139 1.626654 GAATGTCGTGGCACTCGTGG 61.627 60.000 16.72 0.00 46.06 4.94
139 140 0.667487 AGAATGTCGTGGCACTCGTG 60.667 55.000 16.72 0.00 46.06 4.35
140 141 0.033504 AAGAATGTCGTGGCACTCGT 59.966 50.000 16.72 7.28 46.06 4.18
141 142 9.081984 CTCTAATTAAGAATGTCGTGGCACTCG 62.082 44.444 16.72 3.29 39.25 4.18
142 143 4.946784 AATTAAGAATGTCGTGGCACTC 57.053 40.909 16.72 9.23 0.00 3.51
143 144 5.730550 TCTAATTAAGAATGTCGTGGCACT 58.269 37.500 16.72 0.00 0.00 4.40
144 145 5.810587 TCTCTAATTAAGAATGTCGTGGCAC 59.189 40.000 7.79 7.79 32.46 5.01
145 146 5.972935 TCTCTAATTAAGAATGTCGTGGCA 58.027 37.500 0.00 0.00 32.46 4.92
146 147 6.535508 AGTTCTCTAATTAAGAATGTCGTGGC 59.464 38.462 11.00 0.00 35.35 5.01
147 148 9.021863 GTAGTTCTCTAATTAAGAATGTCGTGG 57.978 37.037 11.00 0.00 35.35 4.94
148 149 8.734933 CGTAGTTCTCTAATTAAGAATGTCGTG 58.265 37.037 11.00 1.60 35.35 4.35
149 150 7.914346 CCGTAGTTCTCTAATTAAGAATGTCGT 59.086 37.037 11.00 0.00 35.35 4.34
150 151 7.914346 ACCGTAGTTCTCTAATTAAGAATGTCG 59.086 37.037 11.00 13.01 35.35 4.35
151 152 9.583765 AACCGTAGTTCTCTAATTAAGAATGTC 57.416 33.333 11.00 3.01 35.35 3.06
155 156 9.428097 GGAAAACCGTAGTTCTCTAATTAAGAA 57.572 33.333 6.19 6.19 34.19 2.52
156 157 8.810041 AGGAAAACCGTAGTTCTCTAATTAAGA 58.190 33.333 0.00 0.00 34.19 2.10
157 158 8.999220 AGGAAAACCGTAGTTCTCTAATTAAG 57.001 34.615 0.00 0.00 34.19 1.85
158 159 8.810041 AGAGGAAAACCGTAGTTCTCTAATTAA 58.190 33.333 0.00 0.00 34.57 1.40
159 160 8.358582 AGAGGAAAACCGTAGTTCTCTAATTA 57.641 34.615 0.00 0.00 34.57 1.40
160 161 7.242322 AGAGGAAAACCGTAGTTCTCTAATT 57.758 36.000 0.00 0.00 34.57 1.40
164 165 4.833938 AGAAGAGGAAAACCGTAGTTCTCT 59.166 41.667 0.00 0.00 36.67 3.10
165 166 4.924462 CAGAAGAGGAAAACCGTAGTTCTC 59.076 45.833 0.00 0.00 34.19 2.87
167 168 4.879598 TCAGAAGAGGAAAACCGTAGTTC 58.120 43.478 0.00 0.00 34.19 3.01
168 169 4.950205 TCAGAAGAGGAAAACCGTAGTT 57.050 40.909 0.00 0.00 38.03 2.24
169 170 4.950205 TTCAGAAGAGGAAAACCGTAGT 57.050 40.909 0.00 0.00 0.00 2.73
170 171 5.479306 TGATTCAGAAGAGGAAAACCGTAG 58.521 41.667 0.00 0.00 0.00 3.51
172 173 4.351874 TGATTCAGAAGAGGAAAACCGT 57.648 40.909 0.00 0.00 0.00 4.83
173 174 5.645497 AGAATGATTCAGAAGAGGAAAACCG 59.355 40.000 8.03 0.00 0.00 4.44
192 193 6.814506 ATTTGGACTCAGTTCTTCAGAATG 57.185 37.500 0.00 0.00 36.33 2.67
193 194 7.684529 AGTATTTGGACTCAGTTCTTCAGAAT 58.315 34.615 0.00 0.00 36.33 2.40
195 196 6.672266 AGTATTTGGACTCAGTTCTTCAGA 57.328 37.500 0.00 0.00 0.00 3.27
196 197 6.708054 ACAAGTATTTGGACTCAGTTCTTCAG 59.292 38.462 2.81 0.00 38.66 3.02
197 198 6.483307 CACAAGTATTTGGACTCAGTTCTTCA 59.517 38.462 2.81 0.00 38.66 3.02
198 199 6.483640 ACACAAGTATTTGGACTCAGTTCTTC 59.516 38.462 2.81 0.00 38.66 2.87
199 200 6.357367 ACACAAGTATTTGGACTCAGTTCTT 58.643 36.000 2.81 0.00 38.66 2.52
200 201 5.930135 ACACAAGTATTTGGACTCAGTTCT 58.070 37.500 2.81 0.00 38.66 3.01
201 202 5.992217 AGACACAAGTATTTGGACTCAGTTC 59.008 40.000 2.81 0.00 38.66 3.01
204 205 5.541845 TCAGACACAAGTATTTGGACTCAG 58.458 41.667 2.81 0.00 38.66 3.35
205 206 5.304357 TCTCAGACACAAGTATTTGGACTCA 59.696 40.000 2.81 0.00 38.66 3.41
206 207 5.784177 TCTCAGACACAAGTATTTGGACTC 58.216 41.667 2.81 0.00 38.66 3.36
209 210 5.763204 GGTTTCTCAGACACAAGTATTTGGA 59.237 40.000 2.81 0.00 38.66 3.53
210 211 5.048713 GGGTTTCTCAGACACAAGTATTTGG 60.049 44.000 2.81 0.00 38.66 3.28
212 213 5.690865 TGGGTTTCTCAGACACAAGTATTT 58.309 37.500 0.00 0.00 0.00 1.40
213 214 5.304686 TGGGTTTCTCAGACACAAGTATT 57.695 39.130 0.00 0.00 0.00 1.89
214 215 4.974645 TGGGTTTCTCAGACACAAGTAT 57.025 40.909 0.00 0.00 0.00 2.12
215 216 4.448210 GTTGGGTTTCTCAGACACAAGTA 58.552 43.478 0.00 0.00 40.77 2.24
216 217 3.279434 GTTGGGTTTCTCAGACACAAGT 58.721 45.455 0.00 0.00 40.77 3.16
217 218 2.618709 GGTTGGGTTTCTCAGACACAAG 59.381 50.000 0.00 0.00 40.77 3.16
220 221 2.341846 TGGTTGGGTTTCTCAGACAC 57.658 50.000 0.00 0.00 0.00 3.67
221 222 4.394729 GTTATGGTTGGGTTTCTCAGACA 58.605 43.478 0.00 0.00 0.00 3.41
222 223 3.435671 CGTTATGGTTGGGTTTCTCAGAC 59.564 47.826 0.00 0.00 0.00 3.51
223 224 3.558321 CCGTTATGGTTGGGTTTCTCAGA 60.558 47.826 0.00 0.00 0.00 3.27
224 225 2.747446 CCGTTATGGTTGGGTTTCTCAG 59.253 50.000 0.00 0.00 0.00 3.35
225 226 2.553466 CCCGTTATGGTTGGGTTTCTCA 60.553 50.000 0.00 0.00 38.18 3.27
226 227 2.089201 CCCGTTATGGTTGGGTTTCTC 58.911 52.381 0.00 0.00 38.18 2.87
227 228 2.209690 CCCGTTATGGTTGGGTTTCT 57.790 50.000 0.00 0.00 38.18 2.52
243 244 1.072116 TTTCGATGCGACGTTACCCG 61.072 55.000 0.00 0.00 44.03 5.28
244 245 1.283736 ATTTCGATGCGACGTTACCC 58.716 50.000 0.00 0.00 34.89 3.69
246 247 3.363788 ACAATTTCGATGCGACGTTAC 57.636 42.857 0.00 0.00 34.89 2.50
247 248 5.485831 CATAACAATTTCGATGCGACGTTA 58.514 37.500 0.00 0.00 34.89 3.18
250 251 2.708962 GCATAACAATTTCGATGCGACG 59.291 45.455 0.00 0.00 35.75 5.12
251 252 3.679725 TGCATAACAATTTCGATGCGAC 58.320 40.909 9.48 0.00 46.15 5.19
252 253 4.550577 ATGCATAACAATTTCGATGCGA 57.449 36.364 0.00 0.00 46.15 5.10
253 254 5.204101 TGTATGCATAACAATTTCGATGCG 58.796 37.500 8.28 0.00 46.15 4.73
254 255 7.060289 CAGATGTATGCATAACAATTTCGATGC 59.940 37.037 8.28 7.83 44.00 3.91
256 257 7.080099 GCAGATGTATGCATAACAATTTCGAT 58.920 34.615 8.28 0.00 45.77 3.59
257 258 6.429624 GCAGATGTATGCATAACAATTTCGA 58.570 36.000 8.28 0.00 45.77 3.71
258 259 6.664978 GCAGATGTATGCATAACAATTTCG 57.335 37.500 8.28 3.27 45.77 3.46
281 282 7.798596 ATATCACATTTCCAAGCTGACTAAG 57.201 36.000 0.00 0.00 0.00 2.18
282 283 9.109393 GTTATATCACATTTCCAAGCTGACTAA 57.891 33.333 0.00 0.00 0.00 2.24
284 285 7.281774 CAGTTATATCACATTTCCAAGCTGACT 59.718 37.037 0.00 0.00 0.00 3.41
285 286 7.412853 CAGTTATATCACATTTCCAAGCTGAC 58.587 38.462 0.00 0.00 0.00 3.51
288 2794 5.300286 GGCAGTTATATCACATTTCCAAGCT 59.700 40.000 0.00 0.00 0.00 3.74
291 2797 6.186957 AGTGGCAGTTATATCACATTTCCAA 58.813 36.000 0.00 0.00 33.01 3.53
307 2813 1.131638 TGTCCTCTGAAAGTGGCAGT 58.868 50.000 0.00 0.00 46.94 4.40
331 2838 2.689983 CAAACTTGTTCTGAAGCCACCT 59.310 45.455 0.00 0.00 0.00 4.00
333 2840 2.099756 AGCAAACTTGTTCTGAAGCCAC 59.900 45.455 0.00 0.00 0.00 5.01
334 2841 2.378038 AGCAAACTTGTTCTGAAGCCA 58.622 42.857 0.00 0.00 0.00 4.75
336 2843 3.067320 AGGAAGCAAACTTGTTCTGAAGC 59.933 43.478 0.00 0.00 35.82 3.86
342 2855 4.202050 ACATGACAGGAAGCAAACTTGTTC 60.202 41.667 0.00 0.00 35.82 3.18
394 2907 1.683385 CTCCGGCATCTCACATGAGTA 59.317 52.381 8.70 0.00 42.60 2.59
396 2909 0.749049 TCTCCGGCATCTCACATGAG 59.251 55.000 0.00 2.24 43.36 2.90
397 2910 1.342496 GATCTCCGGCATCTCACATGA 59.658 52.381 0.00 0.00 0.00 3.07
481 2996 2.356135 GTTCATGCACCCGTATCAGTT 58.644 47.619 0.00 0.00 0.00 3.16
488 3003 1.374252 GAGTCGTTCATGCACCCGT 60.374 57.895 0.00 0.00 0.00 5.28
489 3004 2.444624 CGAGTCGTTCATGCACCCG 61.445 63.158 3.82 0.00 0.00 5.28
507 3026 5.124457 ACAGATACCTGAAATTGTGATGTGC 59.876 40.000 0.00 0.00 43.02 4.57
508 3027 6.372381 TGACAGATACCTGAAATTGTGATGTG 59.628 38.462 0.00 0.00 43.02 3.21
567 3105 2.823154 GGGATTGAACAATTTCGGTGGA 59.177 45.455 1.56 0.00 34.04 4.02
692 3232 5.105997 GCCTGTAGTTGCTTTCTCATCATTT 60.106 40.000 0.00 0.00 0.00 2.32
712 3278 3.138798 GGTGCATGCCAGAGCCTG 61.139 66.667 16.68 0.00 38.69 4.85
738 3304 2.513317 TGGATTAGATTGTGATGGGGCA 59.487 45.455 0.00 0.00 0.00 5.36
801 3367 1.832167 TTGGCAAGGGACAAGGCAC 60.832 57.895 0.00 0.00 37.02 5.01
802 3368 1.832167 GTTGGCAAGGGACAAGGCA 60.832 57.895 0.00 0.00 44.40 4.75
934 3509 4.022935 TGGATGTTGCAATTCTCAGTTGAC 60.023 41.667 0.59 0.00 0.00 3.18
935 3510 4.143543 TGGATGTTGCAATTCTCAGTTGA 58.856 39.130 0.59 0.00 0.00 3.18
1194 3780 1.474478 CTGAGGAGCTCGCTAAAGACA 59.526 52.381 7.83 0.00 32.35 3.41
1212 3798 0.326048 ACTCCTCCTGGGACATCCTG 60.326 60.000 0.00 0.00 39.58 3.86
1236 3822 0.039256 TCTTGCCATCGCTTGCAAAC 60.039 50.000 0.00 0.00 45.94 2.93
1627 6534 6.098838 TGTGTATTCTCTGTGGAGCAAGATAT 59.901 38.462 0.00 0.00 39.31 1.63
1665 6628 7.442364 TGTTCTGGCTTATATTGAGTAGATTGC 59.558 37.037 0.00 0.00 0.00 3.56
1712 6684 4.935205 TCACCTGGTCATTTCACTAATTCG 59.065 41.667 0.00 0.00 0.00 3.34
1769 6741 6.358178 TGGATTGATGGCATTGCAATAATTT 58.642 32.000 12.53 0.00 32.80 1.82
1812 6785 7.922505 TTCTATTCCATTTTCGTGTTTGTTG 57.077 32.000 0.00 0.00 0.00 3.33
1887 6860 1.464734 TTGTTTCTCCCGTTGCAACA 58.535 45.000 28.01 9.07 0.00 3.33
1914 6887 0.417841 AAGGAGGGAAGCACTAGGGA 59.582 55.000 0.00 0.00 0.00 4.20
2029 7002 0.674581 CGCTGGTCTTTCCATGCAGA 60.675 55.000 0.00 0.00 46.12 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.