Multiple sequence alignment - TraesCS5D01G350900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G350900 chr5D 100.000 2444 0 0 1 2444 434687697 434690140 0.000000e+00 4514.0
1 TraesCS5D01G350900 chr5D 87.892 1817 156 28 668 2442 434567322 434565528 0.000000e+00 2078.0
2 TraesCS5D01G350900 chr5D 85.437 927 106 9 671 1579 434600546 434599631 0.000000e+00 937.0
3 TraesCS5D01G350900 chr5D 81.316 760 76 32 751 1469 434548909 434548175 7.630000e-155 556.0
4 TraesCS5D01G350900 chr5D 84.926 544 58 17 761 1292 434666569 434667100 1.660000e-146 529.0
5 TraesCS5D01G350900 chr5D 87.316 339 42 1 1013 1351 434675699 434676036 1.060000e-103 387.0
6 TraesCS5D01G350900 chr5D 78.305 295 33 18 1824 2108 434599633 434599360 6.990000e-36 161.0
7 TraesCS5D01G350900 chr5D 80.795 151 17 3 528 669 181951970 181952117 9.240000e-20 108.0
8 TraesCS5D01G350900 chr5D 87.500 48 6 0 1643 1690 439474464 439474511 3.390000e-04 56.5
9 TraesCS5D01G350900 chr5B 87.129 1818 138 41 668 2443 527601650 527599887 0.000000e+00 1973.0
10 TraesCS5D01G350900 chr5B 88.432 1435 120 24 756 2162 527769556 527768140 0.000000e+00 1688.0
11 TraesCS5D01G350900 chr5B 85.011 874 84 22 763 1604 527492232 527491374 0.000000e+00 845.0
12 TraesCS5D01G350900 chr5B 86.786 280 32 3 2168 2443 527764842 527764564 8.490000e-80 307.0
13 TraesCS5D01G350900 chr5A 88.536 881 78 10 751 1615 548658103 548657230 0.000000e+00 1046.0
14 TraesCS5D01G350900 chr5A 81.149 870 106 25 761 1605 548503680 548504516 0.000000e+00 645.0
15 TraesCS5D01G350900 chr5A 79.825 114 20 1 528 641 217397134 217397244 2.010000e-11 80.5
16 TraesCS5D01G350900 chr1B 84.231 260 35 5 2188 2444 639168686 639168942 5.220000e-62 248.0
17 TraesCS5D01G350900 chr4A 78.448 348 56 12 2106 2444 623360999 623361336 2.460000e-50 209.0
18 TraesCS5D01G350900 chr4A 94.737 38 2 0 1788 1825 712126415 712126452 2.620000e-05 60.2
19 TraesCS5D01G350900 chr3D 76.923 338 61 11 2108 2441 501303417 501303093 2.500000e-40 176.0
20 TraesCS5D01G350900 chr3D 82.759 145 16 6 532 671 63775659 63775519 1.190000e-23 121.0
21 TraesCS5D01G350900 chr3D 90.789 76 7 0 1746 1821 571358666 571358741 4.300000e-18 102.0
22 TraesCS5D01G350900 chr1A 90.110 91 9 0 583 673 5608362 5608272 4.270000e-23 119.0
23 TraesCS5D01G350900 chr1A 83.951 81 8 4 1747 1824 516739031 516739109 3.370000e-09 73.1
24 TraesCS5D01G350900 chr7B 80.625 160 22 3 1675 1833 59823763 59823612 5.520000e-22 115.0
25 TraesCS5D01G350900 chr7B 78.919 185 20 9 1642 1823 60064685 60064517 9.240000e-20 108.0
26 TraesCS5D01G350900 chr6D 82.069 145 13 5 535 670 433443100 433443240 7.140000e-21 111.0
27 TraesCS5D01G350900 chr6D 89.744 78 5 2 543 620 388557920 388557846 2.000000e-16 97.1
28 TraesCS5D01G350900 chr3B 87.129 101 10 2 540 640 99469066 99468969 7.140000e-21 111.0
29 TraesCS5D01G350900 chr1D 81.290 155 14 6 528 671 48513487 48513337 7.140000e-21 111.0
30 TraesCS5D01G350900 chr1D 88.679 53 3 3 1633 1685 90378264 90378313 7.300000e-06 62.1
31 TraesCS5D01G350900 chr1D 92.683 41 2 1 1645 1684 462155551 462155591 9.440000e-05 58.4
32 TraesCS5D01G350900 chr3A 77.436 195 29 11 1644 1837 59465779 59465599 4.300000e-18 102.0
33 TraesCS5D01G350900 chr3A 94.595 37 0 2 1749 1785 127962774 127962740 3.390000e-04 56.5
34 TraesCS5D01G350900 chr7D 94.030 67 3 1 1760 1826 403152367 403152432 1.550000e-17 100.0
35 TraesCS5D01G350900 chr6A 87.356 87 11 0 1738 1824 22807379 22807293 1.550000e-17 100.0
36 TraesCS5D01G350900 chr6A 88.312 77 9 0 1749 1825 609828549 609828625 2.590000e-15 93.5
37 TraesCS5D01G350900 chrUn 90.411 73 7 0 1749 1821 302454775 302454847 2.000000e-16 97.1
38 TraesCS5D01G350900 chrUn 90.411 73 7 0 1749 1821 330584479 330584551 2.000000e-16 97.1
39 TraesCS5D01G350900 chrUn 88.158 76 9 0 1749 1824 17495973 17495898 9.310000e-15 91.6
40 TraesCS5D01G350900 chr2D 80.769 130 19 5 532 659 80033450 80033325 2.000000e-16 97.1
41 TraesCS5D01G350900 chr6B 88.158 76 9 0 1746 1821 706534437 706534512 9.310000e-15 91.6
42 TraesCS5D01G350900 chr6B 89.362 47 5 0 1644 1690 34193180 34193134 2.620000e-05 60.2
43 TraesCS5D01G350900 chr7A 90.909 66 4 2 1711 1774 729569711 729569646 1.200000e-13 87.9
44 TraesCS5D01G350900 chr7A 90.476 42 1 3 1628 1669 106747731 106747693 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G350900 chr5D 434687697 434690140 2443 False 4514.0 4514 100.000 1 2444 1 chr5D.!!$F4 2443
1 TraesCS5D01G350900 chr5D 434565528 434567322 1794 True 2078.0 2078 87.892 668 2442 1 chr5D.!!$R2 1774
2 TraesCS5D01G350900 chr5D 434548175 434548909 734 True 556.0 556 81.316 751 1469 1 chr5D.!!$R1 718
3 TraesCS5D01G350900 chr5D 434599360 434600546 1186 True 549.0 937 81.871 671 2108 2 chr5D.!!$R3 1437
4 TraesCS5D01G350900 chr5D 434666569 434667100 531 False 529.0 529 84.926 761 1292 1 chr5D.!!$F2 531
5 TraesCS5D01G350900 chr5B 527599887 527601650 1763 True 1973.0 1973 87.129 668 2443 1 chr5B.!!$R2 1775
6 TraesCS5D01G350900 chr5B 527764564 527769556 4992 True 997.5 1688 87.609 756 2443 2 chr5B.!!$R3 1687
7 TraesCS5D01G350900 chr5B 527491374 527492232 858 True 845.0 845 85.011 763 1604 1 chr5B.!!$R1 841
8 TraesCS5D01G350900 chr5A 548657230 548658103 873 True 1046.0 1046 88.536 751 1615 1 chr5A.!!$R1 864
9 TraesCS5D01G350900 chr5A 548503680 548504516 836 False 645.0 645 81.149 761 1605 1 chr5A.!!$F2 844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.03467 GCATCAGCCAGGTCTTCCTT 60.035 55.0 0.0 0.0 43.07 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 2270 0.376152 GGCGATCGTTGACTCGACTA 59.624 55.0 17.81 0.0 42.56 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.785453 GCTGCAAGGGACGGGGAG 62.785 72.222 0.00 0.00 0.00 4.30
40 41 4.101448 CTGCAAGGGACGGGGAGG 62.101 72.222 0.00 0.00 0.00 4.30
57 58 2.788589 GGGGGAGAAGGGAGGAGT 59.211 66.667 0.00 0.00 0.00 3.85
58 59 1.383386 GGGGGAGAAGGGAGGAGTC 60.383 68.421 0.00 0.00 0.00 3.36
59 60 1.383386 GGGGAGAAGGGAGGAGTCC 60.383 68.421 0.00 0.00 43.05 3.85
60 61 1.758906 GGGAGAAGGGAGGAGTCCG 60.759 68.421 2.76 0.00 45.05 4.79
61 62 1.000612 GGAGAAGGGAGGAGTCCGT 59.999 63.158 2.76 0.00 45.05 4.69
62 63 1.038681 GGAGAAGGGAGGAGTCCGTC 61.039 65.000 2.76 1.83 45.05 4.79
63 64 1.378124 GAGAAGGGAGGAGTCCGTCG 61.378 65.000 2.76 0.00 45.05 5.12
64 65 2.362632 AAGGGAGGAGTCCGTCGG 60.363 66.667 4.39 4.39 45.05 4.79
65 66 3.959329 AAGGGAGGAGTCCGTCGGG 62.959 68.421 12.29 0.00 45.05 5.14
81 82 4.382541 GGGGGCCAACAGGAAGGG 62.383 72.222 4.39 0.00 0.00 3.95
82 83 4.382541 GGGGCCAACAGGAAGGGG 62.383 72.222 4.39 0.00 0.00 4.79
83 84 3.264845 GGGCCAACAGGAAGGGGA 61.265 66.667 4.39 0.00 0.00 4.81
84 85 2.035783 GGCCAACAGGAAGGGGAC 59.964 66.667 0.00 0.00 0.00 4.46
109 110 4.468689 GGGGACCGCACCACTAGC 62.469 72.222 3.14 0.00 40.86 3.42
110 111 4.468689 GGGACCGCACCACTAGCC 62.469 72.222 0.00 0.00 0.00 3.93
111 112 4.814294 GGACCGCACCACTAGCCG 62.814 72.222 0.00 0.00 0.00 5.52
112 113 4.814294 GACCGCACCACTAGCCGG 62.814 72.222 0.00 0.00 33.79 6.13
115 116 4.514577 CGCACCACTAGCCGGGAG 62.515 72.222 2.18 0.00 0.00 4.30
116 117 3.075005 GCACCACTAGCCGGGAGA 61.075 66.667 2.18 0.00 0.00 3.71
117 118 3.082579 GCACCACTAGCCGGGAGAG 62.083 68.421 2.18 0.00 0.00 3.20
118 119 2.760385 ACCACTAGCCGGGAGAGC 60.760 66.667 2.18 0.00 0.00 4.09
119 120 3.905678 CCACTAGCCGGGAGAGCG 61.906 72.222 2.18 0.00 34.64 5.03
120 121 3.905678 CACTAGCCGGGAGAGCGG 61.906 72.222 2.18 0.00 34.64 5.52
131 132 4.761058 AGAGCGGCGGGGAGAGAA 62.761 66.667 9.78 0.00 0.00 2.87
132 133 4.214327 GAGCGGCGGGGAGAGAAG 62.214 72.222 9.78 0.00 0.00 2.85
139 140 4.516195 GGGGAGAGAAGCGGCGAC 62.516 72.222 12.98 1.23 0.00 5.19
176 177 4.875713 CCGAAATGCCGGGGAGGG 62.876 72.222 2.18 0.00 45.43 4.30
178 179 2.193248 GAAATGCCGGGGAGGGAG 59.807 66.667 2.18 0.00 46.12 4.30
179 180 3.420482 AAATGCCGGGGAGGGAGG 61.420 66.667 2.18 0.00 46.12 4.30
221 222 4.232310 GCATCAGCCAGGTCTTCC 57.768 61.111 0.00 0.00 33.58 3.46
222 223 1.606531 GCATCAGCCAGGTCTTCCT 59.393 57.895 0.00 0.00 46.37 3.36
223 224 0.034670 GCATCAGCCAGGTCTTCCTT 60.035 55.000 0.00 0.00 43.07 3.36
224 225 2.016096 GCATCAGCCAGGTCTTCCTTC 61.016 57.143 0.00 0.00 43.07 3.46
225 226 0.539051 ATCAGCCAGGTCTTCCTTCG 59.461 55.000 0.00 0.00 43.07 3.79
226 227 1.743252 CAGCCAGGTCTTCCTTCGC 60.743 63.158 0.00 0.00 43.07 4.70
227 228 2.217038 AGCCAGGTCTTCCTTCGCA 61.217 57.895 0.00 0.00 43.07 5.10
228 229 1.743252 GCCAGGTCTTCCTTCGCAG 60.743 63.158 0.00 0.00 43.07 5.18
229 230 1.743252 CCAGGTCTTCCTTCGCAGC 60.743 63.158 0.00 0.00 43.07 5.25
230 231 1.004560 CAGGTCTTCCTTCGCAGCA 60.005 57.895 0.00 0.00 43.07 4.41
231 232 0.603707 CAGGTCTTCCTTCGCAGCAA 60.604 55.000 0.00 0.00 43.07 3.91
232 233 0.603975 AGGTCTTCCTTCGCAGCAAC 60.604 55.000 0.00 0.00 42.12 4.17
233 234 1.493311 GTCTTCCTTCGCAGCAACG 59.507 57.895 0.00 0.00 0.00 4.10
234 235 1.069090 TCTTCCTTCGCAGCAACGT 59.931 52.632 0.00 0.00 0.00 3.99
235 236 0.944311 TCTTCCTTCGCAGCAACGTC 60.944 55.000 0.00 0.00 0.00 4.34
236 237 1.901650 CTTCCTTCGCAGCAACGTCC 61.902 60.000 0.00 0.00 0.00 4.79
237 238 3.777925 CCTTCGCAGCAACGTCCG 61.778 66.667 0.00 0.00 0.00 4.79
238 239 4.430423 CTTCGCAGCAACGTCCGC 62.430 66.667 1.80 1.80 0.00 5.54
243 244 3.055719 CAGCAACGTCCGCCCAAT 61.056 61.111 6.32 0.00 0.00 3.16
244 245 3.055719 AGCAACGTCCGCCCAATG 61.056 61.111 6.32 0.00 0.00 2.82
245 246 4.776647 GCAACGTCCGCCCAATGC 62.777 66.667 0.00 0.00 0.00 3.56
246 247 3.361158 CAACGTCCGCCCAATGCA 61.361 61.111 0.00 0.00 41.33 3.96
247 248 3.055719 AACGTCCGCCCAATGCAG 61.056 61.111 0.00 0.00 41.33 4.41
275 276 3.213402 CGAGGAGCGGGAGAGGAC 61.213 72.222 0.00 0.00 36.03 3.85
276 277 3.213402 GAGGAGCGGGAGAGGACG 61.213 72.222 0.00 0.00 0.00 4.79
277 278 4.824515 AGGAGCGGGAGAGGACGG 62.825 72.222 0.00 0.00 0.00 4.79
282 283 3.227276 CGGGAGAGGACGGGGATG 61.227 72.222 0.00 0.00 0.00 3.51
283 284 2.844839 GGGAGAGGACGGGGATGG 60.845 72.222 0.00 0.00 0.00 3.51
284 285 2.844839 GGAGAGGACGGGGATGGG 60.845 72.222 0.00 0.00 0.00 4.00
285 286 2.844839 GAGAGGACGGGGATGGGG 60.845 72.222 0.00 0.00 0.00 4.96
286 287 3.364964 AGAGGACGGGGATGGGGA 61.365 66.667 0.00 0.00 0.00 4.81
287 288 2.844839 GAGGACGGGGATGGGGAG 60.845 72.222 0.00 0.00 0.00 4.30
288 289 4.499116 AGGACGGGGATGGGGAGG 62.499 72.222 0.00 0.00 0.00 4.30
295 296 4.880426 GGATGGGGAGGGCCGAGA 62.880 72.222 0.00 0.00 33.83 4.04
296 297 3.551407 GATGGGGAGGGCCGAGAC 61.551 72.222 0.00 0.00 33.83 3.36
332 333 4.120755 GGAGGAGGGCAAGGGCAG 62.121 72.222 0.00 0.00 43.71 4.85
333 334 4.120755 GAGGAGGGCAAGGGCAGG 62.121 72.222 0.00 0.00 43.71 4.85
393 394 4.785512 AGAGGCAAGACGCGCGAG 62.786 66.667 39.36 22.72 43.84 5.03
398 399 3.470567 CAAGACGCGCGAGGTCAC 61.471 66.667 39.36 18.48 36.87 3.67
399 400 4.719369 AAGACGCGCGAGGTCACC 62.719 66.667 39.36 14.96 36.87 4.02
407 408 4.873129 CGAGGTCACCCATCGCCG 62.873 72.222 0.00 0.00 0.00 6.46
411 412 4.760047 GTCACCCATCGCCGCTGT 62.760 66.667 0.00 0.00 0.00 4.40
412 413 4.451150 TCACCCATCGCCGCTGTC 62.451 66.667 0.00 0.00 0.00 3.51
413 414 4.457496 CACCCATCGCCGCTGTCT 62.457 66.667 0.00 0.00 0.00 3.41
414 415 4.457496 ACCCATCGCCGCTGTCTG 62.457 66.667 0.00 0.00 0.00 3.51
416 417 4.147449 CCATCGCCGCTGTCTGGA 62.147 66.667 0.00 0.00 0.00 3.86
417 418 2.107750 CATCGCCGCTGTCTGGAT 59.892 61.111 0.00 0.00 0.00 3.41
418 419 1.953138 CATCGCCGCTGTCTGGATC 60.953 63.158 0.00 0.00 0.00 3.36
419 420 2.426406 ATCGCCGCTGTCTGGATCA 61.426 57.895 0.00 0.00 0.00 2.92
420 421 1.960040 ATCGCCGCTGTCTGGATCAA 61.960 55.000 0.00 0.00 0.00 2.57
421 422 1.741401 CGCCGCTGTCTGGATCAAA 60.741 57.895 0.00 0.00 0.00 2.69
422 423 1.298157 CGCCGCTGTCTGGATCAAAA 61.298 55.000 0.00 0.00 0.00 2.44
423 424 0.881118 GCCGCTGTCTGGATCAAAAA 59.119 50.000 0.00 0.00 0.00 1.94
424 425 1.474077 GCCGCTGTCTGGATCAAAAAT 59.526 47.619 0.00 0.00 0.00 1.82
425 426 2.682856 GCCGCTGTCTGGATCAAAAATA 59.317 45.455 0.00 0.00 0.00 1.40
426 427 3.487544 GCCGCTGTCTGGATCAAAAATAC 60.488 47.826 0.00 0.00 0.00 1.89
427 428 3.941483 CCGCTGTCTGGATCAAAAATACT 59.059 43.478 0.00 0.00 0.00 2.12
428 429 4.396166 CCGCTGTCTGGATCAAAAATACTT 59.604 41.667 0.00 0.00 0.00 2.24
429 430 5.584649 CCGCTGTCTGGATCAAAAATACTTA 59.415 40.000 0.00 0.00 0.00 2.24
430 431 6.093495 CCGCTGTCTGGATCAAAAATACTTAA 59.907 38.462 0.00 0.00 0.00 1.85
431 432 6.961554 CGCTGTCTGGATCAAAAATACTTAAC 59.038 38.462 0.00 0.00 0.00 2.01
432 433 7.360861 CGCTGTCTGGATCAAAAATACTTAACA 60.361 37.037 0.00 0.00 0.00 2.41
433 434 8.296713 GCTGTCTGGATCAAAAATACTTAACAA 58.703 33.333 0.00 0.00 0.00 2.83
434 435 9.612620 CTGTCTGGATCAAAAATACTTAACAAC 57.387 33.333 0.00 0.00 0.00 3.32
435 436 9.126151 TGTCTGGATCAAAAATACTTAACAACA 57.874 29.630 0.00 0.00 0.00 3.33
436 437 9.612620 GTCTGGATCAAAAATACTTAACAACAG 57.387 33.333 0.00 0.00 0.00 3.16
437 438 9.349713 TCTGGATCAAAAATACTTAACAACAGT 57.650 29.630 0.00 0.00 0.00 3.55
438 439 9.612620 CTGGATCAAAAATACTTAACAACAGTC 57.387 33.333 0.00 0.00 0.00 3.51
439 440 9.126151 TGGATCAAAAATACTTAACAACAGTCA 57.874 29.630 0.00 0.00 0.00 3.41
444 445 8.905702 CAAAAATACTTAACAACAGTCATGAGC 58.094 33.333 0.00 0.00 0.00 4.26
445 446 7.986085 AAATACTTAACAACAGTCATGAGCT 57.014 32.000 0.00 0.00 0.00 4.09
446 447 9.502091 AAAATACTTAACAACAGTCATGAGCTA 57.498 29.630 0.00 0.00 0.00 3.32
447 448 8.709386 AATACTTAACAACAGTCATGAGCTAG 57.291 34.615 0.00 0.00 0.00 3.42
448 449 4.932200 ACTTAACAACAGTCATGAGCTAGC 59.068 41.667 6.62 6.62 0.00 3.42
449 450 3.692257 AACAACAGTCATGAGCTAGCT 57.308 42.857 19.45 19.45 0.00 3.32
450 451 4.808414 AACAACAGTCATGAGCTAGCTA 57.192 40.909 19.38 6.79 0.00 3.32
451 452 4.383850 ACAACAGTCATGAGCTAGCTAG 57.616 45.455 19.38 16.84 0.00 3.42
452 453 4.019858 ACAACAGTCATGAGCTAGCTAGA 58.980 43.478 25.15 13.34 0.00 2.43
453 454 4.142271 ACAACAGTCATGAGCTAGCTAGAC 60.142 45.833 25.15 25.49 0.00 2.59
454 455 2.955660 ACAGTCATGAGCTAGCTAGACC 59.044 50.000 27.51 14.40 0.00 3.85
455 456 2.954989 CAGTCATGAGCTAGCTAGACCA 59.045 50.000 27.51 19.27 0.00 4.02
456 457 3.573538 CAGTCATGAGCTAGCTAGACCAT 59.426 47.826 27.51 20.52 0.00 3.55
457 458 4.039004 CAGTCATGAGCTAGCTAGACCATT 59.961 45.833 27.51 15.15 0.00 3.16
458 459 4.039004 AGTCATGAGCTAGCTAGACCATTG 59.961 45.833 27.51 17.11 0.00 2.82
459 460 4.038522 GTCATGAGCTAGCTAGACCATTGA 59.961 45.833 25.15 18.63 0.00 2.57
460 461 4.038522 TCATGAGCTAGCTAGACCATTGAC 59.961 45.833 25.15 1.13 0.00 3.18
461 462 2.359214 TGAGCTAGCTAGACCATTGACG 59.641 50.000 25.15 0.00 0.00 4.35
462 463 2.619177 GAGCTAGCTAGACCATTGACGA 59.381 50.000 25.15 0.00 0.00 4.20
463 464 2.621055 AGCTAGCTAGACCATTGACGAG 59.379 50.000 25.15 0.00 0.00 4.18
464 465 2.619177 GCTAGCTAGACCATTGACGAGA 59.381 50.000 25.15 0.00 0.00 4.04
465 466 3.254657 GCTAGCTAGACCATTGACGAGAT 59.745 47.826 25.15 0.00 0.00 2.75
466 467 4.261825 GCTAGCTAGACCATTGACGAGATT 60.262 45.833 25.15 0.00 0.00 2.40
467 468 4.744795 AGCTAGACCATTGACGAGATTT 57.255 40.909 0.00 0.00 0.00 2.17
468 469 5.091261 AGCTAGACCATTGACGAGATTTT 57.909 39.130 0.00 0.00 0.00 1.82
469 470 6.222038 AGCTAGACCATTGACGAGATTTTA 57.778 37.500 0.00 0.00 0.00 1.52
470 471 6.821388 AGCTAGACCATTGACGAGATTTTAT 58.179 36.000 0.00 0.00 0.00 1.40
471 472 6.926272 AGCTAGACCATTGACGAGATTTTATC 59.074 38.462 0.00 0.00 0.00 1.75
472 473 6.701841 GCTAGACCATTGACGAGATTTTATCA 59.298 38.462 0.00 0.00 0.00 2.15
473 474 6.910536 AGACCATTGACGAGATTTTATCAC 57.089 37.500 0.00 0.00 0.00 3.06
474 475 6.644347 AGACCATTGACGAGATTTTATCACT 58.356 36.000 0.00 0.00 0.00 3.41
475 476 6.758886 AGACCATTGACGAGATTTTATCACTC 59.241 38.462 0.00 0.00 0.00 3.51
476 477 6.644347 ACCATTGACGAGATTTTATCACTCT 58.356 36.000 0.00 0.00 0.00 3.24
477 478 7.106239 ACCATTGACGAGATTTTATCACTCTT 58.894 34.615 0.00 0.00 0.00 2.85
478 479 7.065085 ACCATTGACGAGATTTTATCACTCTTG 59.935 37.037 0.00 0.00 0.00 3.02
479 480 6.408858 TTGACGAGATTTTATCACTCTTGC 57.591 37.500 0.00 0.00 0.00 4.01
480 481 5.478407 TGACGAGATTTTATCACTCTTGCA 58.522 37.500 0.00 0.00 0.00 4.08
481 482 5.348724 TGACGAGATTTTATCACTCTTGCAC 59.651 40.000 0.00 0.00 0.00 4.57
482 483 5.482908 ACGAGATTTTATCACTCTTGCACT 58.517 37.500 0.00 0.00 0.00 4.40
483 484 6.631016 ACGAGATTTTATCACTCTTGCACTA 58.369 36.000 0.00 0.00 0.00 2.74
484 485 6.754209 ACGAGATTTTATCACTCTTGCACTAG 59.246 38.462 0.00 0.00 0.00 2.57
485 486 6.975197 CGAGATTTTATCACTCTTGCACTAGA 59.025 38.462 0.00 0.00 0.00 2.43
486 487 7.651304 CGAGATTTTATCACTCTTGCACTAGAT 59.349 37.037 0.00 0.00 0.00 1.98
487 488 9.973450 GAGATTTTATCACTCTTGCACTAGATA 57.027 33.333 0.00 0.00 0.00 1.98
492 493 9.973450 TTTATCACTCTTGCACTAGATATCTTC 57.027 33.333 11.25 0.00 0.00 2.87
493 494 7.594351 ATCACTCTTGCACTAGATATCTTCA 57.406 36.000 11.25 1.90 0.00 3.02
494 495 7.594351 TCACTCTTGCACTAGATATCTTCAT 57.406 36.000 11.25 0.00 0.00 2.57
495 496 7.656412 TCACTCTTGCACTAGATATCTTCATC 58.344 38.462 11.25 0.00 0.00 2.92
496 497 7.505248 TCACTCTTGCACTAGATATCTTCATCT 59.495 37.037 11.25 0.00 38.76 2.90
497 498 7.809331 CACTCTTGCACTAGATATCTTCATCTC 59.191 40.741 11.25 0.00 36.63 2.75
498 499 7.505248 ACTCTTGCACTAGATATCTTCATCTCA 59.495 37.037 11.25 0.00 36.63 3.27
499 500 7.884257 TCTTGCACTAGATATCTTCATCTCAG 58.116 38.462 11.25 2.70 36.63 3.35
500 501 6.023357 TGCACTAGATATCTTCATCTCAGC 57.977 41.667 11.25 5.32 36.63 4.26
501 502 5.537674 TGCACTAGATATCTTCATCTCAGCA 59.462 40.000 11.25 7.66 36.63 4.41
502 503 6.094719 GCACTAGATATCTTCATCTCAGCAG 58.905 44.000 11.25 0.44 36.63 4.24
503 504 6.623486 CACTAGATATCTTCATCTCAGCAGG 58.377 44.000 11.25 0.00 36.63 4.85
504 505 5.716228 ACTAGATATCTTCATCTCAGCAGGG 59.284 44.000 11.25 0.00 36.63 4.45
505 506 3.839490 AGATATCTTCATCTCAGCAGGGG 59.161 47.826 0.00 0.00 28.83 4.79
506 507 0.473326 ATCTTCATCTCAGCAGGGGC 59.527 55.000 0.00 0.00 41.61 5.80
507 508 1.153005 CTTCATCTCAGCAGGGGCC 60.153 63.158 0.00 0.00 42.56 5.80
508 509 1.918467 CTTCATCTCAGCAGGGGCCA 61.918 60.000 4.39 0.00 42.56 5.36
509 510 1.284111 TTCATCTCAGCAGGGGCCAT 61.284 55.000 4.39 0.00 42.56 4.40
510 511 0.400381 TCATCTCAGCAGGGGCCATA 60.400 55.000 4.39 0.00 42.56 2.74
511 512 0.036448 CATCTCAGCAGGGGCCATAG 59.964 60.000 4.39 0.00 42.56 2.23
512 513 0.104777 ATCTCAGCAGGGGCCATAGA 60.105 55.000 4.39 0.00 42.56 1.98
513 514 0.326522 TCTCAGCAGGGGCCATAGAA 60.327 55.000 4.39 0.00 42.56 2.10
514 515 0.179034 CTCAGCAGGGGCCATAGAAC 60.179 60.000 4.39 0.00 42.56 3.01
515 516 0.621571 TCAGCAGGGGCCATAGAACT 60.622 55.000 4.39 0.00 42.56 3.01
516 517 0.179034 CAGCAGGGGCCATAGAACTC 60.179 60.000 4.39 0.00 42.56 3.01
517 518 0.327000 AGCAGGGGCCATAGAACTCT 60.327 55.000 4.39 0.00 42.56 3.24
518 519 1.062121 AGCAGGGGCCATAGAACTCTA 60.062 52.381 4.39 0.00 42.56 2.43
519 520 1.981495 GCAGGGGCCATAGAACTCTAT 59.019 52.381 4.39 0.00 39.61 1.98
533 534 1.618487 CTCTATGGAGTACCCCGACC 58.382 60.000 0.00 0.00 35.03 4.79
534 535 0.928505 TCTATGGAGTACCCCGACCA 59.071 55.000 0.00 0.00 36.83 4.02
535 536 1.288633 TCTATGGAGTACCCCGACCAA 59.711 52.381 0.00 0.00 36.00 3.67
536 537 2.090943 TCTATGGAGTACCCCGACCAAT 60.091 50.000 0.00 0.00 36.00 3.16
537 538 1.591768 ATGGAGTACCCCGACCAATT 58.408 50.000 0.00 0.00 36.00 2.32
538 539 1.364269 TGGAGTACCCCGACCAATTT 58.636 50.000 0.00 0.00 34.81 1.82
539 540 1.706305 TGGAGTACCCCGACCAATTTT 59.294 47.619 0.00 0.00 34.81 1.82
540 541 2.911636 TGGAGTACCCCGACCAATTTTA 59.088 45.455 0.00 0.00 34.81 1.52
541 542 3.524380 TGGAGTACCCCGACCAATTTTAT 59.476 43.478 0.00 0.00 34.81 1.40
542 543 4.018233 TGGAGTACCCCGACCAATTTTATT 60.018 41.667 0.00 0.00 34.81 1.40
543 544 4.951715 GGAGTACCCCGACCAATTTTATTT 59.048 41.667 0.00 0.00 0.00 1.40
544 545 5.419788 GGAGTACCCCGACCAATTTTATTTT 59.580 40.000 0.00 0.00 0.00 1.82
545 546 6.071221 GGAGTACCCCGACCAATTTTATTTTT 60.071 38.462 0.00 0.00 0.00 1.94
582 583 9.425577 CTAGGCAAGTCTTAATTAGTATTAGGC 57.574 37.037 0.00 0.00 0.00 3.93
583 584 8.035448 AGGCAAGTCTTAATTAGTATTAGGCT 57.965 34.615 0.00 0.00 0.00 4.58
584 585 8.495260 AGGCAAGTCTTAATTAGTATTAGGCTT 58.505 33.333 0.00 0.00 0.00 4.35
585 586 8.775527 GGCAAGTCTTAATTAGTATTAGGCTTC 58.224 37.037 0.00 0.00 0.00 3.86
586 587 9.549078 GCAAGTCTTAATTAGTATTAGGCTTCT 57.451 33.333 0.00 0.00 0.00 2.85
617 618 9.806448 AAATAAATTTGGTTGGGCTTCTAAAAT 57.194 25.926 0.00 0.00 0.00 1.82
620 621 8.846943 AAATTTGGTTGGGCTTCTAAAATAAG 57.153 30.769 0.00 0.00 0.00 1.73
621 622 6.987403 TTTGGTTGGGCTTCTAAAATAAGT 57.013 33.333 0.00 0.00 0.00 2.24
622 623 6.987403 TTGGTTGGGCTTCTAAAATAAGTT 57.013 33.333 0.00 0.00 0.00 2.66
623 624 6.339587 TGGTTGGGCTTCTAAAATAAGTTG 57.660 37.500 0.00 0.00 0.00 3.16
624 625 5.245075 TGGTTGGGCTTCTAAAATAAGTTGG 59.755 40.000 0.00 0.00 0.00 3.77
625 626 5.337250 GGTTGGGCTTCTAAAATAAGTTGGG 60.337 44.000 0.00 0.00 0.00 4.12
626 627 3.767131 TGGGCTTCTAAAATAAGTTGGGC 59.233 43.478 0.00 0.00 0.00 5.36
627 628 3.767131 GGGCTTCTAAAATAAGTTGGGCA 59.233 43.478 0.00 0.00 0.00 5.36
628 629 4.142160 GGGCTTCTAAAATAAGTTGGGCAG 60.142 45.833 0.00 0.00 0.00 4.85
629 630 4.142160 GGCTTCTAAAATAAGTTGGGCAGG 60.142 45.833 0.00 0.00 0.00 4.85
630 631 4.705023 GCTTCTAAAATAAGTTGGGCAGGA 59.295 41.667 0.00 0.00 0.00 3.86
631 632 5.163612 GCTTCTAAAATAAGTTGGGCAGGAG 60.164 44.000 0.00 0.00 0.00 3.69
632 633 5.772393 TCTAAAATAAGTTGGGCAGGAGA 57.228 39.130 0.00 0.00 0.00 3.71
633 634 5.497474 TCTAAAATAAGTTGGGCAGGAGAC 58.503 41.667 0.00 0.00 0.00 3.36
634 635 3.806949 AAATAAGTTGGGCAGGAGACA 57.193 42.857 0.00 0.00 0.00 3.41
635 636 3.356529 AATAAGTTGGGCAGGAGACAG 57.643 47.619 0.00 0.00 0.00 3.51
636 637 0.324943 TAAGTTGGGCAGGAGACAGC 59.675 55.000 0.00 0.00 43.05 4.40
637 638 1.422161 AAGTTGGGCAGGAGACAGCT 61.422 55.000 0.00 0.00 43.36 4.24
638 639 1.073897 GTTGGGCAGGAGACAGCTT 59.926 57.895 0.00 0.00 43.36 3.74
639 640 0.324943 GTTGGGCAGGAGACAGCTTA 59.675 55.000 0.00 0.00 43.36 3.09
640 641 1.065126 GTTGGGCAGGAGACAGCTTAT 60.065 52.381 0.00 0.00 43.36 1.73
641 642 1.289160 TGGGCAGGAGACAGCTTATT 58.711 50.000 0.00 0.00 43.36 1.40
642 643 2.477245 TGGGCAGGAGACAGCTTATTA 58.523 47.619 0.00 0.00 43.36 0.98
643 644 3.048600 TGGGCAGGAGACAGCTTATTAT 58.951 45.455 0.00 0.00 43.36 1.28
644 645 4.231273 TGGGCAGGAGACAGCTTATTATA 58.769 43.478 0.00 0.00 43.36 0.98
645 646 4.284490 TGGGCAGGAGACAGCTTATTATAG 59.716 45.833 0.00 0.00 43.36 1.31
646 647 4.528596 GGGCAGGAGACAGCTTATTATAGA 59.471 45.833 0.00 0.00 43.36 1.98
647 648 5.012148 GGGCAGGAGACAGCTTATTATAGAA 59.988 44.000 0.00 0.00 43.36 2.10
648 649 6.162777 GGCAGGAGACAGCTTATTATAGAAG 58.837 44.000 0.00 0.00 43.36 2.85
659 660 7.264373 GCTTATTATAGAAGCCAGCAAAAGA 57.736 36.000 9.32 0.00 42.90 2.52
660 661 7.707104 GCTTATTATAGAAGCCAGCAAAAGAA 58.293 34.615 9.32 0.00 42.90 2.52
661 662 8.355913 GCTTATTATAGAAGCCAGCAAAAGAAT 58.644 33.333 9.32 0.00 42.90 2.40
664 665 3.672767 AGAAGCCAGCAAAAGAATTGG 57.327 42.857 0.00 0.00 0.00 3.16
700 701 2.146342 GTATGGCAGCACGCTATGATT 58.854 47.619 7.17 0.00 42.62 2.57
702 703 1.462616 TGGCAGCACGCTATGATTTT 58.537 45.000 0.00 0.00 41.91 1.82
716 717 3.451141 TGATTTTCAAGCACACCCAAC 57.549 42.857 0.00 0.00 0.00 3.77
719 720 3.685139 TTTTCAAGCACACCCAACAAA 57.315 38.095 0.00 0.00 0.00 2.83
722 723 3.902881 TCAAGCACACCCAACAAAAAT 57.097 38.095 0.00 0.00 0.00 1.82
723 724 5.344743 TTCAAGCACACCCAACAAAAATA 57.655 34.783 0.00 0.00 0.00 1.40
725 726 5.734720 TCAAGCACACCCAACAAAAATAAA 58.265 33.333 0.00 0.00 0.00 1.40
733 739 7.545965 CACACCCAACAAAAATAAAACTACACA 59.454 33.333 0.00 0.00 0.00 3.72
759 773 6.371548 GCTAGTTATGTCCAACAACTGATGAA 59.628 38.462 7.52 0.00 34.48 2.57
830 852 0.461548 TGTTCTAGAGCTCATGGCCG 59.538 55.000 17.77 0.00 43.05 6.13
989 1062 6.830838 AGCCAATAAAGAAATACAAGGAGGAG 59.169 38.462 0.00 0.00 0.00 3.69
990 1063 6.460261 GCCAATAAAGAAATACAAGGAGGAGC 60.460 42.308 0.00 0.00 0.00 4.70
993 1066 7.872113 ATAAAGAAATACAAGGAGGAGCAAG 57.128 36.000 0.00 0.00 0.00 4.01
1032 1105 0.540923 AGAGACTTGCTCAGATGGCC 59.459 55.000 0.00 0.00 46.45 5.36
1071 1144 2.194326 GCCATGGGGAGGAAGAGC 59.806 66.667 15.13 0.00 35.59 4.09
1304 1389 0.467474 ATCATGCTGCCCTGTGATGG 60.467 55.000 0.00 0.00 30.61 3.51
1380 1465 2.294979 GTGATGGCATTCATGAGCTCA 58.705 47.619 20.79 20.79 35.97 4.26
1385 1470 1.266175 GGCATTCATGAGCTCAATCGG 59.734 52.381 22.50 10.87 0.00 4.18
1429 1523 3.253838 TGGTGGGCGTAGGGCTTT 61.254 61.111 8.99 0.00 42.94 3.51
1430 1524 2.035155 GGTGGGCGTAGGGCTTTT 59.965 61.111 8.99 0.00 42.94 2.27
1475 1574 2.094390 GCTTCTGAAGAATGGCATGCAA 60.094 45.455 21.36 9.21 33.01 4.08
1486 1585 1.561076 TGGCATGCAACTGTAGAGGAT 59.439 47.619 21.36 0.00 0.00 3.24
1620 1726 9.511144 ACTTTTGTAACTCCAATAAAGAAAACG 57.489 29.630 0.00 0.00 0.00 3.60
1625 1731 5.447624 ACTCCAATAAAGAAAACGTTGGG 57.552 39.130 0.00 0.00 39.74 4.12
1626 1732 4.891168 ACTCCAATAAAGAAAACGTTGGGT 59.109 37.500 0.00 0.00 39.74 4.51
1627 1733 5.189659 TCCAATAAAGAAAACGTTGGGTG 57.810 39.130 0.00 0.00 39.74 4.61
1628 1734 4.645588 TCCAATAAAGAAAACGTTGGGTGT 59.354 37.500 0.00 0.00 39.74 4.16
1629 1735 5.826737 TCCAATAAAGAAAACGTTGGGTGTA 59.173 36.000 0.00 0.00 39.74 2.90
1630 1736 6.490721 TCCAATAAAGAAAACGTTGGGTGTAT 59.509 34.615 0.00 0.00 39.74 2.29
1631 1737 6.584563 CCAATAAAGAAAACGTTGGGTGTATG 59.415 38.462 0.00 0.00 36.53 2.39
1632 1738 6.887626 ATAAAGAAAACGTTGGGTGTATGT 57.112 33.333 0.00 0.00 0.00 2.29
1694 1800 0.329261 ATAGCACTTTGAGCAGGGCA 59.671 50.000 0.00 0.00 46.68 5.36
1696 1802 1.900498 GCACTTTGAGCAGGGCACT 60.900 57.895 0.00 0.00 43.38 4.40
1747 1854 5.186996 ACAATTGTGCGAAAAGTTCTGAT 57.813 34.783 11.07 0.00 0.00 2.90
1780 1887 3.760580 AGCCTCGCTATAGCTGATTTT 57.239 42.857 21.98 6.97 36.99 1.82
1939 2054 4.006319 AGCTGATAGCAGTTTTCTTCACC 58.994 43.478 10.15 0.00 45.56 4.02
1940 2055 4.006319 GCTGATAGCAGTTTTCTTCACCT 58.994 43.478 10.15 0.00 44.17 4.00
1997 2112 6.092122 TCGAATGTAACCATCTTAACAAGCTG 59.908 38.462 0.00 0.00 0.00 4.24
2010 2125 7.158697 TCTTAACAAGCTGCACTAGTTATTGA 58.841 34.615 1.02 4.64 0.00 2.57
2011 2126 7.824289 TCTTAACAAGCTGCACTAGTTATTGAT 59.176 33.333 1.02 0.00 0.00 2.57
2018 2133 8.567285 AGCTGCACTAGTTATTGATAAAAGTT 57.433 30.769 1.02 0.00 0.00 2.66
2081 2203 0.320771 GCTGACACAGTGACCCGATT 60.321 55.000 7.81 0.00 33.43 3.34
2130 2253 3.516615 GCGGATCTTCATATAGCTCCAC 58.483 50.000 0.00 0.00 31.35 4.02
2132 2255 4.399618 GCGGATCTTCATATAGCTCCACTA 59.600 45.833 0.00 0.00 31.35 2.74
2138 2261 4.948062 TCATATAGCTCCACTAGGCCTA 57.052 45.455 13.09 13.09 33.29 3.93
2140 2263 5.204292 TCATATAGCTCCACTAGGCCTATG 58.796 45.833 14.30 13.27 33.78 2.23
2141 2264 3.551635 ATAGCTCCACTAGGCCTATGT 57.448 47.619 14.30 10.83 33.29 2.29
2147 2270 1.559682 CCACTAGGCCTATGTGGTGTT 59.440 52.381 32.53 6.23 44.35 3.32
2148 2271 2.769663 CCACTAGGCCTATGTGGTGTTA 59.230 50.000 32.53 8.36 44.35 2.41
2151 2274 3.705072 ACTAGGCCTATGTGGTGTTAGTC 59.295 47.826 14.30 0.00 38.35 2.59
2164 2287 2.839026 GTGTTAGTCGAGTCAACGATCG 59.161 50.000 14.88 14.88 43.93 3.69
2183 5598 2.162716 CCTACGGCAAAGTCACAGC 58.837 57.895 0.00 0.00 0.00 4.40
2205 5620 2.812613 CGTTTTGCTCAGGGTTTAGGGA 60.813 50.000 0.00 0.00 0.00 4.20
2208 5623 0.918983 TGCTCAGGGTTTAGGGATGG 59.081 55.000 0.00 0.00 0.00 3.51
2209 5624 0.919710 GCTCAGGGTTTAGGGATGGT 59.080 55.000 0.00 0.00 0.00 3.55
2233 5651 2.035632 GACACCTCTAGGGGAGTGATG 58.964 57.143 17.33 5.51 42.67 3.07
2237 5655 1.323412 CTCTAGGGGAGTGATGACGG 58.677 60.000 0.00 0.00 37.30 4.79
2242 5660 1.541310 GGGGAGTGATGACGGTGACA 61.541 60.000 0.00 0.00 0.00 3.58
2243 5661 0.320374 GGGAGTGATGACGGTGACAA 59.680 55.000 0.00 0.00 0.00 3.18
2249 5667 0.944311 GATGACGGTGACAACTGCGT 60.944 55.000 0.00 0.00 35.97 5.24
2322 5740 1.642037 CCGCTCAGCAGTTGTGATGG 61.642 60.000 0.00 0.00 40.69 3.51
2332 5751 3.716601 CAGTTGTGATGGTTTTTCACCC 58.283 45.455 1.73 0.00 46.68 4.61
2346 5765 4.654389 TTTCACCCGGTTTTCCCTAATA 57.346 40.909 0.00 0.00 36.42 0.98
2350 5769 3.444742 CACCCGGTTTTCCCTAATAAACC 59.555 47.826 0.00 0.00 46.25 3.27
2406 5826 4.505313 AACCGAGCAATTCTTTTCTTCC 57.495 40.909 0.00 0.00 0.00 3.46
2417 5837 7.253883 GCAATTCTTTTCTTCCTAATGAATGCG 60.254 37.037 0.00 0.00 32.78 4.73
2436 5856 1.312815 GGGAATCCTGCCATTTCGAG 58.687 55.000 0.00 0.00 32.01 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.785453 CTCCCCGTCCCTTGCAGC 62.785 72.222 0.00 0.00 0.00 5.25
23 24 4.101448 CCTCCCCGTCCCTTGCAG 62.101 72.222 0.00 0.00 0.00 4.41
40 41 1.383386 GACTCCTCCCTTCTCCCCC 60.383 68.421 0.00 0.00 0.00 5.40
41 42 1.383386 GGACTCCTCCCTTCTCCCC 60.383 68.421 0.00 0.00 0.00 4.81
42 43 1.758906 CGGACTCCTCCCTTCTCCC 60.759 68.421 0.00 0.00 31.93 4.30
43 44 1.000612 ACGGACTCCTCCCTTCTCC 59.999 63.158 0.00 0.00 31.93 3.71
44 45 1.378124 CGACGGACTCCTCCCTTCTC 61.378 65.000 0.00 0.00 31.93 2.87
45 46 1.378778 CGACGGACTCCTCCCTTCT 60.379 63.158 0.00 0.00 31.93 2.85
46 47 2.416432 CCGACGGACTCCTCCCTTC 61.416 68.421 8.64 0.00 31.93 3.46
47 48 2.362632 CCGACGGACTCCTCCCTT 60.363 66.667 8.64 0.00 31.93 3.95
48 49 4.444081 CCCGACGGACTCCTCCCT 62.444 72.222 17.49 0.00 31.93 4.20
64 65 4.382541 CCCTTCCTGTTGGCCCCC 62.383 72.222 0.00 0.00 0.00 5.40
65 66 4.382541 CCCCTTCCTGTTGGCCCC 62.383 72.222 0.00 0.00 0.00 5.80
66 67 3.264845 TCCCCTTCCTGTTGGCCC 61.265 66.667 0.00 0.00 0.00 5.80
67 68 2.035783 GTCCCCTTCCTGTTGGCC 59.964 66.667 0.00 0.00 0.00 5.36
68 69 2.035783 GGTCCCCTTCCTGTTGGC 59.964 66.667 0.00 0.00 0.00 4.52
69 70 2.351276 CGGTCCCCTTCCTGTTGG 59.649 66.667 0.00 0.00 0.00 3.77
70 71 2.221299 TCCGGTCCCCTTCCTGTTG 61.221 63.158 0.00 0.00 0.00 3.33
71 72 2.206036 TCCGGTCCCCTTCCTGTT 59.794 61.111 0.00 0.00 0.00 3.16
72 73 2.606826 GTCCGGTCCCCTTCCTGT 60.607 66.667 0.00 0.00 0.00 4.00
73 74 3.771160 CGTCCGGTCCCCTTCCTG 61.771 72.222 0.00 0.00 0.00 3.86
74 75 3.959329 CTCGTCCGGTCCCCTTCCT 62.959 68.421 0.00 0.00 0.00 3.36
75 76 3.459063 CTCGTCCGGTCCCCTTCC 61.459 72.222 0.00 0.00 0.00 3.46
76 77 3.459063 CCTCGTCCGGTCCCCTTC 61.459 72.222 0.00 0.00 0.00 3.46
90 91 2.682494 TAGTGGTGCGGTCCCCTC 60.682 66.667 0.00 0.00 0.00 4.30
91 92 2.683933 CTAGTGGTGCGGTCCCCT 60.684 66.667 0.00 0.00 0.00 4.79
92 93 4.468689 GCTAGTGGTGCGGTCCCC 62.469 72.222 0.00 0.00 0.00 4.81
93 94 4.468689 GGCTAGTGGTGCGGTCCC 62.469 72.222 0.00 0.00 0.00 4.46
94 95 4.814294 CGGCTAGTGGTGCGGTCC 62.814 72.222 0.00 0.00 0.00 4.46
95 96 4.814294 CCGGCTAGTGGTGCGGTC 62.814 72.222 0.00 0.00 0.00 4.79
98 99 4.514577 CTCCCGGCTAGTGGTGCG 62.515 72.222 0.00 0.00 0.00 5.34
99 100 3.075005 TCTCCCGGCTAGTGGTGC 61.075 66.667 0.00 0.00 0.00 5.01
100 101 3.082579 GCTCTCCCGGCTAGTGGTG 62.083 68.421 0.00 0.00 0.00 4.17
101 102 2.760385 GCTCTCCCGGCTAGTGGT 60.760 66.667 0.00 0.00 0.00 4.16
102 103 3.905678 CGCTCTCCCGGCTAGTGG 61.906 72.222 0.00 0.00 0.00 4.00
103 104 3.905678 CCGCTCTCCCGGCTAGTG 61.906 72.222 0.00 0.00 42.03 2.74
114 115 4.761058 TTCTCTCCCCGCCGCTCT 62.761 66.667 0.00 0.00 0.00 4.09
115 116 4.214327 CTTCTCTCCCCGCCGCTC 62.214 72.222 0.00 0.00 0.00 5.03
122 123 4.516195 GTCGCCGCTTCTCTCCCC 62.516 72.222 0.00 0.00 0.00 4.81
123 124 4.856607 CGTCGCCGCTTCTCTCCC 62.857 72.222 0.00 0.00 0.00 4.30
124 125 4.856607 CCGTCGCCGCTTCTCTCC 62.857 72.222 0.00 0.00 0.00 3.71
160 161 3.757248 CTCCCTCCCCGGCATTTCG 62.757 68.421 0.00 0.00 0.00 3.46
161 162 2.193248 CTCCCTCCCCGGCATTTC 59.807 66.667 0.00 0.00 0.00 2.17
162 163 3.420482 CCTCCCTCCCCGGCATTT 61.420 66.667 0.00 0.00 0.00 2.32
204 205 1.606531 AGGAAGACCTGGCTGATGC 59.393 57.895 0.00 0.00 45.92 3.91
214 215 1.869690 GTTGCTGCGAAGGAAGACC 59.130 57.895 0.00 0.00 0.00 3.85
215 216 1.222115 ACGTTGCTGCGAAGGAAGAC 61.222 55.000 0.00 0.00 35.59 3.01
216 217 0.944311 GACGTTGCTGCGAAGGAAGA 60.944 55.000 0.00 0.00 35.59 2.87
217 218 1.493311 GACGTTGCTGCGAAGGAAG 59.507 57.895 0.00 0.00 35.59 3.46
218 219 1.959226 GGACGTTGCTGCGAAGGAA 60.959 57.895 7.71 0.00 35.59 3.36
219 220 2.357034 GGACGTTGCTGCGAAGGA 60.357 61.111 7.71 0.00 35.59 3.36
220 221 3.777925 CGGACGTTGCTGCGAAGG 61.778 66.667 7.71 5.59 35.59 3.46
221 222 4.430423 GCGGACGTTGCTGCGAAG 62.430 66.667 6.49 1.04 35.59 3.79
226 227 3.055719 ATTGGGCGGACGTTGCTG 61.056 61.111 12.59 0.00 0.00 4.41
227 228 3.055719 CATTGGGCGGACGTTGCT 61.056 61.111 12.59 0.00 0.00 3.91
228 229 4.776647 GCATTGGGCGGACGTTGC 62.777 66.667 5.26 5.26 0.00 4.17
258 259 3.213402 GTCCTCTCCCGCTCCTCG 61.213 72.222 0.00 0.00 38.08 4.63
259 260 3.213402 CGTCCTCTCCCGCTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
260 261 4.824515 CCGTCCTCTCCCGCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
265 266 3.227276 CATCCCCGTCCTCTCCCG 61.227 72.222 0.00 0.00 0.00 5.14
266 267 2.844839 CCATCCCCGTCCTCTCCC 60.845 72.222 0.00 0.00 0.00 4.30
267 268 2.844839 CCCATCCCCGTCCTCTCC 60.845 72.222 0.00 0.00 0.00 3.71
268 269 2.844839 CCCCATCCCCGTCCTCTC 60.845 72.222 0.00 0.00 0.00 3.20
269 270 3.364964 TCCCCATCCCCGTCCTCT 61.365 66.667 0.00 0.00 0.00 3.69
270 271 2.844839 CTCCCCATCCCCGTCCTC 60.845 72.222 0.00 0.00 0.00 3.71
271 272 4.499116 CCTCCCCATCCCCGTCCT 62.499 72.222 0.00 0.00 0.00 3.85
278 279 4.880426 TCTCGGCCCTCCCCATCC 62.880 72.222 0.00 0.00 0.00 3.51
279 280 3.551407 GTCTCGGCCCTCCCCATC 61.551 72.222 0.00 0.00 0.00 3.51
315 316 4.120755 CTGCCCTTGCCCTCCTCC 62.121 72.222 0.00 0.00 36.33 4.30
316 317 4.120755 CCTGCCCTTGCCCTCCTC 62.121 72.222 0.00 0.00 36.33 3.71
376 377 4.785512 CTCGCGCGTCTTGCCTCT 62.786 66.667 30.98 0.00 42.08 3.69
381 382 3.470567 GTGACCTCGCGCGTCTTG 61.471 66.667 30.98 18.09 0.00 3.02
382 383 4.719369 GGTGACCTCGCGCGTCTT 62.719 66.667 30.98 14.74 0.00 3.01
394 395 4.760047 ACAGCGGCGATGGGTGAC 62.760 66.667 29.60 0.00 36.74 3.67
395 396 4.451150 GACAGCGGCGATGGGTGA 62.451 66.667 29.60 0.00 36.74 4.02
396 397 4.457496 AGACAGCGGCGATGGGTG 62.457 66.667 29.60 8.94 38.77 4.61
397 398 4.457496 CAGACAGCGGCGATGGGT 62.457 66.667 29.60 13.01 0.00 4.51
399 400 3.451556 ATCCAGACAGCGGCGATGG 62.452 63.158 29.60 17.75 0.00 3.51
400 401 1.953138 GATCCAGACAGCGGCGATG 60.953 63.158 24.95 24.95 0.00 3.84
401 402 1.960040 TTGATCCAGACAGCGGCGAT 61.960 55.000 12.98 0.00 0.00 4.58
402 403 2.166130 TTTGATCCAGACAGCGGCGA 62.166 55.000 12.98 0.00 0.00 5.54
403 404 1.298157 TTTTGATCCAGACAGCGGCG 61.298 55.000 0.51 0.51 0.00 6.46
404 405 0.881118 TTTTTGATCCAGACAGCGGC 59.119 50.000 0.00 0.00 0.00 6.53
405 406 3.941483 AGTATTTTTGATCCAGACAGCGG 59.059 43.478 0.00 0.00 0.00 5.52
406 407 5.551760 AAGTATTTTTGATCCAGACAGCG 57.448 39.130 0.00 0.00 0.00 5.18
407 408 7.816640 TGTTAAGTATTTTTGATCCAGACAGC 58.183 34.615 0.00 0.00 0.00 4.40
408 409 9.612620 GTTGTTAAGTATTTTTGATCCAGACAG 57.387 33.333 0.00 0.00 0.00 3.51
409 410 9.126151 TGTTGTTAAGTATTTTTGATCCAGACA 57.874 29.630 0.00 0.00 0.00 3.41
410 411 9.612620 CTGTTGTTAAGTATTTTTGATCCAGAC 57.387 33.333 0.00 0.00 0.00 3.51
411 412 9.349713 ACTGTTGTTAAGTATTTTTGATCCAGA 57.650 29.630 0.00 0.00 0.00 3.86
412 413 9.612620 GACTGTTGTTAAGTATTTTTGATCCAG 57.387 33.333 0.00 0.00 0.00 3.86
413 414 9.126151 TGACTGTTGTTAAGTATTTTTGATCCA 57.874 29.630 0.00 0.00 0.00 3.41
418 419 8.905702 GCTCATGACTGTTGTTAAGTATTTTTG 58.094 33.333 0.00 0.00 0.00 2.44
419 420 8.850156 AGCTCATGACTGTTGTTAAGTATTTTT 58.150 29.630 0.00 0.00 0.00 1.94
420 421 8.396272 AGCTCATGACTGTTGTTAAGTATTTT 57.604 30.769 0.00 0.00 0.00 1.82
421 422 7.986085 AGCTCATGACTGTTGTTAAGTATTT 57.014 32.000 0.00 0.00 0.00 1.40
422 423 7.278868 GCTAGCTCATGACTGTTGTTAAGTATT 59.721 37.037 7.70 0.00 0.00 1.89
423 424 6.758886 GCTAGCTCATGACTGTTGTTAAGTAT 59.241 38.462 7.70 0.00 0.00 2.12
424 425 6.071334 AGCTAGCTCATGACTGTTGTTAAGTA 60.071 38.462 12.68 0.00 0.00 2.24
425 426 4.932200 GCTAGCTCATGACTGTTGTTAAGT 59.068 41.667 7.70 0.00 0.00 2.24
426 427 5.174395 AGCTAGCTCATGACTGTTGTTAAG 58.826 41.667 12.68 0.00 0.00 1.85
427 428 5.152623 AGCTAGCTCATGACTGTTGTTAA 57.847 39.130 12.68 0.00 0.00 2.01
428 429 4.808414 AGCTAGCTCATGACTGTTGTTA 57.192 40.909 12.68 0.00 0.00 2.41
429 430 3.692257 AGCTAGCTCATGACTGTTGTT 57.308 42.857 12.68 0.00 0.00 2.83
430 431 4.019858 TCTAGCTAGCTCATGACTGTTGT 58.980 43.478 23.26 0.00 0.00 3.32
431 432 4.358851 GTCTAGCTAGCTCATGACTGTTG 58.641 47.826 23.26 0.00 0.00 3.33
432 433 3.383185 GGTCTAGCTAGCTCATGACTGTT 59.617 47.826 28.46 7.84 0.00 3.16
433 434 2.955660 GGTCTAGCTAGCTCATGACTGT 59.044 50.000 28.46 8.43 0.00 3.55
434 435 2.954989 TGGTCTAGCTAGCTCATGACTG 59.045 50.000 28.46 13.00 0.00 3.51
435 436 3.304911 TGGTCTAGCTAGCTCATGACT 57.695 47.619 28.46 9.61 0.00 3.41
436 437 4.038522 TCAATGGTCTAGCTAGCTCATGAC 59.961 45.833 23.26 24.41 0.00 3.06
437 438 4.038522 GTCAATGGTCTAGCTAGCTCATGA 59.961 45.833 23.26 15.13 0.00 3.07
438 439 4.305769 GTCAATGGTCTAGCTAGCTCATG 58.694 47.826 23.26 12.94 0.00 3.07
439 440 3.005261 CGTCAATGGTCTAGCTAGCTCAT 59.995 47.826 23.26 15.50 0.00 2.90
440 441 2.359214 CGTCAATGGTCTAGCTAGCTCA 59.641 50.000 23.26 13.68 0.00 4.26
441 442 2.619177 TCGTCAATGGTCTAGCTAGCTC 59.381 50.000 23.26 7.43 0.00 4.09
442 443 2.621055 CTCGTCAATGGTCTAGCTAGCT 59.379 50.000 23.12 23.12 0.00 3.32
443 444 2.619177 TCTCGTCAATGGTCTAGCTAGC 59.381 50.000 16.35 6.62 0.00 3.42
444 445 5.446143 AATCTCGTCAATGGTCTAGCTAG 57.554 43.478 15.01 15.01 0.00 3.42
445 446 5.854010 AAATCTCGTCAATGGTCTAGCTA 57.146 39.130 0.00 0.00 0.00 3.32
446 447 4.744795 AAATCTCGTCAATGGTCTAGCT 57.255 40.909 0.00 0.00 0.00 3.32
447 448 6.701841 TGATAAAATCTCGTCAATGGTCTAGC 59.298 38.462 0.00 0.00 0.00 3.42
448 449 7.923344 AGTGATAAAATCTCGTCAATGGTCTAG 59.077 37.037 0.00 0.00 0.00 2.43
449 450 7.782049 AGTGATAAAATCTCGTCAATGGTCTA 58.218 34.615 0.00 0.00 0.00 2.59
450 451 6.644347 AGTGATAAAATCTCGTCAATGGTCT 58.356 36.000 0.00 0.00 0.00 3.85
451 452 6.758886 AGAGTGATAAAATCTCGTCAATGGTC 59.241 38.462 0.00 0.00 33.96 4.02
452 453 6.644347 AGAGTGATAAAATCTCGTCAATGGT 58.356 36.000 0.00 0.00 33.96 3.55
453 454 7.404985 CAAGAGTGATAAAATCTCGTCAATGG 58.595 38.462 0.00 0.00 33.96 3.16
454 455 6.904011 GCAAGAGTGATAAAATCTCGTCAATG 59.096 38.462 0.00 0.00 33.96 2.82
455 456 6.595326 TGCAAGAGTGATAAAATCTCGTCAAT 59.405 34.615 0.00 0.00 33.96 2.57
456 457 5.931724 TGCAAGAGTGATAAAATCTCGTCAA 59.068 36.000 0.00 0.00 33.96 3.18
457 458 5.348724 GTGCAAGAGTGATAAAATCTCGTCA 59.651 40.000 0.00 0.00 33.96 4.35
458 459 5.578727 AGTGCAAGAGTGATAAAATCTCGTC 59.421 40.000 0.00 0.00 33.96 4.20
459 460 5.482908 AGTGCAAGAGTGATAAAATCTCGT 58.517 37.500 0.00 0.00 33.96 4.18
460 461 6.975197 TCTAGTGCAAGAGTGATAAAATCTCG 59.025 38.462 0.00 0.00 33.96 4.04
461 462 8.885494 ATCTAGTGCAAGAGTGATAAAATCTC 57.115 34.615 0.00 0.00 0.00 2.75
466 467 9.973450 GAAGATATCTAGTGCAAGAGTGATAAA 57.027 33.333 5.46 0.00 0.00 1.40
467 468 9.136323 TGAAGATATCTAGTGCAAGAGTGATAA 57.864 33.333 5.46 0.00 0.00 1.75
468 469 8.697507 TGAAGATATCTAGTGCAAGAGTGATA 57.302 34.615 5.46 0.00 0.00 2.15
469 470 7.594351 TGAAGATATCTAGTGCAAGAGTGAT 57.406 36.000 5.46 0.00 0.00 3.06
470 471 7.505248 AGATGAAGATATCTAGTGCAAGAGTGA 59.495 37.037 5.46 0.00 35.70 3.41
471 472 7.660112 AGATGAAGATATCTAGTGCAAGAGTG 58.340 38.462 5.46 0.00 35.70 3.51
472 473 7.505248 TGAGATGAAGATATCTAGTGCAAGAGT 59.495 37.037 5.46 0.00 37.53 3.24
473 474 7.884257 TGAGATGAAGATATCTAGTGCAAGAG 58.116 38.462 5.46 0.00 37.53 2.85
474 475 7.523544 GCTGAGATGAAGATATCTAGTGCAAGA 60.524 40.741 5.46 0.00 37.53 3.02
475 476 6.587226 GCTGAGATGAAGATATCTAGTGCAAG 59.413 42.308 5.46 0.83 37.53 4.01
476 477 6.041296 TGCTGAGATGAAGATATCTAGTGCAA 59.959 38.462 5.46 0.00 37.53 4.08
477 478 5.537674 TGCTGAGATGAAGATATCTAGTGCA 59.462 40.000 5.46 5.94 37.53 4.57
478 479 6.023357 TGCTGAGATGAAGATATCTAGTGC 57.977 41.667 5.46 3.58 37.53 4.40
479 480 6.350361 CCCTGCTGAGATGAAGATATCTAGTG 60.350 46.154 5.46 0.00 37.53 2.74
480 481 5.716228 CCCTGCTGAGATGAAGATATCTAGT 59.284 44.000 5.46 0.00 37.53 2.57
481 482 5.127519 CCCCTGCTGAGATGAAGATATCTAG 59.872 48.000 5.46 0.00 37.53 2.43
482 483 5.022122 CCCCTGCTGAGATGAAGATATCTA 58.978 45.833 5.46 0.00 37.53 1.98
483 484 3.839490 CCCCTGCTGAGATGAAGATATCT 59.161 47.826 0.00 0.00 40.02 1.98
484 485 3.619487 GCCCCTGCTGAGATGAAGATATC 60.619 52.174 0.00 0.00 33.53 1.63
485 486 2.305343 GCCCCTGCTGAGATGAAGATAT 59.695 50.000 0.00 0.00 33.53 1.63
486 487 1.696336 GCCCCTGCTGAGATGAAGATA 59.304 52.381 0.00 0.00 33.53 1.98
487 488 0.473326 GCCCCTGCTGAGATGAAGAT 59.527 55.000 0.00 0.00 33.53 2.40
488 489 1.630126 GGCCCCTGCTGAGATGAAGA 61.630 60.000 0.00 0.00 37.74 2.87
489 490 1.153005 GGCCCCTGCTGAGATGAAG 60.153 63.158 0.00 0.00 37.74 3.02
490 491 1.284111 ATGGCCCCTGCTGAGATGAA 61.284 55.000 0.00 0.00 37.74 2.57
491 492 0.400381 TATGGCCCCTGCTGAGATGA 60.400 55.000 0.00 0.00 37.74 2.92
492 493 0.036448 CTATGGCCCCTGCTGAGATG 59.964 60.000 0.00 0.00 37.74 2.90
493 494 0.104777 TCTATGGCCCCTGCTGAGAT 60.105 55.000 0.00 0.00 37.74 2.75
494 495 0.326522 TTCTATGGCCCCTGCTGAGA 60.327 55.000 0.00 0.00 37.74 3.27
495 496 0.179034 GTTCTATGGCCCCTGCTGAG 60.179 60.000 0.00 0.00 37.74 3.35
496 497 0.621571 AGTTCTATGGCCCCTGCTGA 60.622 55.000 0.00 0.00 37.74 4.26
497 498 0.179034 GAGTTCTATGGCCCCTGCTG 60.179 60.000 0.00 0.00 37.74 4.41
498 499 0.327000 AGAGTTCTATGGCCCCTGCT 60.327 55.000 0.00 0.00 37.74 4.24
499 500 1.424638 TAGAGTTCTATGGCCCCTGC 58.575 55.000 0.00 0.00 0.00 4.85
514 515 1.133575 TGGTCGGGGTACTCCATAGAG 60.134 57.143 13.51 0.00 46.36 2.43
515 516 0.928505 TGGTCGGGGTACTCCATAGA 59.071 55.000 13.51 0.00 37.22 1.98
516 517 1.784358 TTGGTCGGGGTACTCCATAG 58.216 55.000 13.51 0.00 37.22 2.23
517 518 2.482414 ATTGGTCGGGGTACTCCATA 57.518 50.000 13.51 0.00 37.22 2.74
518 519 1.591768 AATTGGTCGGGGTACTCCAT 58.408 50.000 13.51 0.00 37.22 3.41
519 520 1.364269 AAATTGGTCGGGGTACTCCA 58.636 50.000 13.51 0.00 37.22 3.86
520 521 2.502142 AAAATTGGTCGGGGTACTCC 57.498 50.000 0.00 0.00 0.00 3.85
521 522 6.519679 AAAATAAAATTGGTCGGGGTACTC 57.480 37.500 0.00 0.00 0.00 2.59
522 523 6.921486 AAAAATAAAATTGGTCGGGGTACT 57.079 33.333 0.00 0.00 0.00 2.73
556 557 9.425577 GCCTAATACTAATTAAGACTTGCCTAG 57.574 37.037 0.00 0.00 0.00 3.02
557 558 9.155785 AGCCTAATACTAATTAAGACTTGCCTA 57.844 33.333 0.00 0.00 0.00 3.93
558 559 8.035448 AGCCTAATACTAATTAAGACTTGCCT 57.965 34.615 0.00 0.00 0.00 4.75
559 560 8.678593 AAGCCTAATACTAATTAAGACTTGCC 57.321 34.615 0.00 0.00 0.00 4.52
560 561 9.549078 AGAAGCCTAATACTAATTAAGACTTGC 57.451 33.333 0.00 0.00 0.00 4.01
591 592 9.806448 ATTTTAGAAGCCCAACCAAATTTATTT 57.194 25.926 0.00 0.00 0.00 1.40
594 595 9.936759 CTTATTTTAGAAGCCCAACCAAATTTA 57.063 29.630 0.00 0.00 0.00 1.40
595 596 8.436778 ACTTATTTTAGAAGCCCAACCAAATTT 58.563 29.630 0.00 0.00 0.00 1.82
596 597 7.973402 ACTTATTTTAGAAGCCCAACCAAATT 58.027 30.769 0.00 0.00 0.00 1.82
597 598 7.553504 ACTTATTTTAGAAGCCCAACCAAAT 57.446 32.000 0.00 0.00 0.00 2.32
598 599 6.987403 ACTTATTTTAGAAGCCCAACCAAA 57.013 33.333 0.00 0.00 0.00 3.28
599 600 6.239458 CCAACTTATTTTAGAAGCCCAACCAA 60.239 38.462 0.00 0.00 0.00 3.67
600 601 5.245075 CCAACTTATTTTAGAAGCCCAACCA 59.755 40.000 0.00 0.00 0.00 3.67
601 602 5.337250 CCCAACTTATTTTAGAAGCCCAACC 60.337 44.000 0.00 0.00 0.00 3.77
602 603 5.720202 CCCAACTTATTTTAGAAGCCCAAC 58.280 41.667 0.00 0.00 0.00 3.77
603 604 4.221924 GCCCAACTTATTTTAGAAGCCCAA 59.778 41.667 0.00 0.00 0.00 4.12
604 605 3.767131 GCCCAACTTATTTTAGAAGCCCA 59.233 43.478 0.00 0.00 0.00 5.36
605 606 3.767131 TGCCCAACTTATTTTAGAAGCCC 59.233 43.478 0.00 0.00 0.00 5.19
606 607 4.142160 CCTGCCCAACTTATTTTAGAAGCC 60.142 45.833 0.00 0.00 0.00 4.35
607 608 4.705023 TCCTGCCCAACTTATTTTAGAAGC 59.295 41.667 0.00 0.00 0.00 3.86
608 609 6.094186 GTCTCCTGCCCAACTTATTTTAGAAG 59.906 42.308 0.00 0.00 0.00 2.85
609 610 5.944007 GTCTCCTGCCCAACTTATTTTAGAA 59.056 40.000 0.00 0.00 0.00 2.10
610 611 5.013704 TGTCTCCTGCCCAACTTATTTTAGA 59.986 40.000 0.00 0.00 0.00 2.10
611 612 5.253330 TGTCTCCTGCCCAACTTATTTTAG 58.747 41.667 0.00 0.00 0.00 1.85
612 613 5.249780 TGTCTCCTGCCCAACTTATTTTA 57.750 39.130 0.00 0.00 0.00 1.52
613 614 4.082125 CTGTCTCCTGCCCAACTTATTTT 58.918 43.478 0.00 0.00 0.00 1.82
614 615 3.690460 CTGTCTCCTGCCCAACTTATTT 58.310 45.455 0.00 0.00 0.00 1.40
615 616 2.619074 GCTGTCTCCTGCCCAACTTATT 60.619 50.000 0.00 0.00 0.00 1.40
616 617 1.065126 GCTGTCTCCTGCCCAACTTAT 60.065 52.381 0.00 0.00 0.00 1.73
617 618 0.324943 GCTGTCTCCTGCCCAACTTA 59.675 55.000 0.00 0.00 0.00 2.24
618 619 1.073897 GCTGTCTCCTGCCCAACTT 59.926 57.895 0.00 0.00 0.00 2.66
619 620 1.422161 AAGCTGTCTCCTGCCCAACT 61.422 55.000 0.00 0.00 36.27 3.16
620 621 0.324943 TAAGCTGTCTCCTGCCCAAC 59.675 55.000 0.00 0.00 36.27 3.77
621 622 1.289160 ATAAGCTGTCTCCTGCCCAA 58.711 50.000 0.00 0.00 36.27 4.12
622 623 1.289160 AATAAGCTGTCTCCTGCCCA 58.711 50.000 0.00 0.00 36.27 5.36
623 624 3.778954 ATAATAAGCTGTCTCCTGCCC 57.221 47.619 0.00 0.00 36.27 5.36
624 625 5.730296 TCTATAATAAGCTGTCTCCTGCC 57.270 43.478 0.00 0.00 36.27 4.85
625 626 5.637387 GCTTCTATAATAAGCTGTCTCCTGC 59.363 44.000 10.75 0.00 44.75 4.85
626 627 6.162777 GGCTTCTATAATAAGCTGTCTCCTG 58.837 44.000 15.45 0.00 46.81 3.86
627 628 5.841237 TGGCTTCTATAATAAGCTGTCTCCT 59.159 40.000 15.45 0.00 46.81 3.69
628 629 6.102897 TGGCTTCTATAATAAGCTGTCTCC 57.897 41.667 15.45 3.31 46.81 3.71
629 630 5.637387 GCTGGCTTCTATAATAAGCTGTCTC 59.363 44.000 15.45 3.83 46.81 3.36
630 631 5.070981 TGCTGGCTTCTATAATAAGCTGTCT 59.929 40.000 15.45 0.00 46.81 3.41
631 632 5.300752 TGCTGGCTTCTATAATAAGCTGTC 58.699 41.667 15.45 8.07 46.81 3.51
632 633 5.296151 TGCTGGCTTCTATAATAAGCTGT 57.704 39.130 15.45 0.00 46.81 4.40
633 634 6.624352 TTTGCTGGCTTCTATAATAAGCTG 57.376 37.500 15.45 11.26 46.81 4.24
634 635 7.056635 TCTTTTGCTGGCTTCTATAATAAGCT 58.943 34.615 15.45 0.00 46.81 3.74
635 636 7.264373 TCTTTTGCTGGCTTCTATAATAAGC 57.736 36.000 9.88 9.88 46.90 3.09
638 639 8.632679 CCAATTCTTTTGCTGGCTTCTATAATA 58.367 33.333 0.00 0.00 0.00 0.98
639 640 7.495055 CCAATTCTTTTGCTGGCTTCTATAAT 58.505 34.615 0.00 0.00 0.00 1.28
640 641 6.866480 CCAATTCTTTTGCTGGCTTCTATAA 58.134 36.000 0.00 0.00 0.00 0.98
641 642 6.455360 CCAATTCTTTTGCTGGCTTCTATA 57.545 37.500 0.00 0.00 0.00 1.31
642 643 5.334724 CCAATTCTTTTGCTGGCTTCTAT 57.665 39.130 0.00 0.00 0.00 1.98
643 644 4.789012 CCAATTCTTTTGCTGGCTTCTA 57.211 40.909 0.00 0.00 0.00 2.10
644 645 3.672767 CCAATTCTTTTGCTGGCTTCT 57.327 42.857 0.00 0.00 0.00 2.85
649 650 0.978907 AGGGCCAATTCTTTTGCTGG 59.021 50.000 6.18 0.00 0.00 4.85
650 651 3.959535 TTAGGGCCAATTCTTTTGCTG 57.040 42.857 6.18 0.00 0.00 4.41
651 652 4.102367 TGTTTTAGGGCCAATTCTTTTGCT 59.898 37.500 6.18 0.00 0.00 3.91
652 653 4.384940 TGTTTTAGGGCCAATTCTTTTGC 58.615 39.130 6.18 0.00 0.00 3.68
653 654 5.852827 TCTGTTTTAGGGCCAATTCTTTTG 58.147 37.500 6.18 0.00 0.00 2.44
654 655 6.269769 TCATCTGTTTTAGGGCCAATTCTTTT 59.730 34.615 6.18 0.00 0.00 2.27
655 656 5.779771 TCATCTGTTTTAGGGCCAATTCTTT 59.220 36.000 6.18 0.00 0.00 2.52
656 657 5.332743 TCATCTGTTTTAGGGCCAATTCTT 58.667 37.500 6.18 0.00 0.00 2.52
657 658 4.934356 TCATCTGTTTTAGGGCCAATTCT 58.066 39.130 6.18 0.00 0.00 2.40
658 659 4.706962 ACTCATCTGTTTTAGGGCCAATTC 59.293 41.667 6.18 0.00 0.00 2.17
659 660 4.677182 ACTCATCTGTTTTAGGGCCAATT 58.323 39.130 6.18 0.00 0.00 2.32
660 661 4.322057 ACTCATCTGTTTTAGGGCCAAT 57.678 40.909 6.18 0.00 0.00 3.16
661 662 3.806949 ACTCATCTGTTTTAGGGCCAA 57.193 42.857 6.18 0.00 0.00 4.52
662 663 4.385199 CCATACTCATCTGTTTTAGGGCCA 60.385 45.833 6.18 0.00 0.00 5.36
663 664 4.137543 CCATACTCATCTGTTTTAGGGCC 58.862 47.826 0.00 0.00 0.00 5.80
664 665 3.565902 GCCATACTCATCTGTTTTAGGGC 59.434 47.826 0.00 0.00 0.00 5.19
665 666 4.780815 TGCCATACTCATCTGTTTTAGGG 58.219 43.478 0.00 0.00 0.00 3.53
666 667 4.274459 GCTGCCATACTCATCTGTTTTAGG 59.726 45.833 0.00 0.00 0.00 2.69
700 701 3.685139 TTTTGTTGGGTGTGCTTGAAA 57.315 38.095 0.00 0.00 0.00 2.69
702 703 3.902881 ATTTTTGTTGGGTGTGCTTGA 57.097 38.095 0.00 0.00 0.00 3.02
722 723 7.898918 TGGACATAACTAGCTGTGTAGTTTTA 58.101 34.615 4.99 0.00 39.73 1.52
723 724 6.765403 TGGACATAACTAGCTGTGTAGTTTT 58.235 36.000 4.99 0.00 39.73 2.43
725 726 5.995565 TGGACATAACTAGCTGTGTAGTT 57.004 39.130 0.00 0.00 43.98 2.24
733 739 5.483685 TCAGTTGTTGGACATAACTAGCT 57.516 39.130 0.00 0.00 33.63 3.32
759 773 6.012113 TGATCTTGATTTGATTTGTCTGGGT 58.988 36.000 0.00 0.00 0.00 4.51
817 839 2.581354 GACACGGCCATGAGCTCT 59.419 61.111 16.19 0.00 43.05 4.09
830 852 1.152756 ACAGGTTGGCAAGGGACAC 60.153 57.895 0.00 0.00 0.00 3.67
989 1062 2.669391 GCACTAACCATGCTTGTCTTGC 60.669 50.000 0.00 0.00 40.08 4.01
990 1063 2.095059 GGCACTAACCATGCTTGTCTTG 60.095 50.000 0.00 0.00 42.93 3.02
993 1066 1.533625 TGGCACTAACCATGCTTGTC 58.466 50.000 0.00 0.00 42.93 3.18
1032 1105 1.747709 CCATCCTCTGCCACTTCTTG 58.252 55.000 0.00 0.00 0.00 3.02
1071 1144 2.159819 CTGTCGTGGTCAGGGTGAGG 62.160 65.000 0.00 0.00 0.00 3.86
1144 1226 3.749981 CACACAGTGGCCCTTCAC 58.250 61.111 5.31 0.00 37.89 3.18
1205 1290 4.988716 AGACCACCGTGCCGAGGA 62.989 66.667 11.00 0.00 0.00 3.71
1217 1302 1.607756 AGGAGCTCGCAGAAGACCA 60.608 57.895 7.83 0.00 34.09 4.02
1304 1389 2.165301 GCGTACTCCATGACCGTGC 61.165 63.158 0.00 0.00 0.00 5.34
1385 1470 3.365265 CAAACCTGCACGGCCTCC 61.365 66.667 0.00 0.00 35.61 4.30
1398 1483 0.385390 CCACCACACTGCCTTCAAAC 59.615 55.000 0.00 0.00 0.00 2.93
1429 1523 4.204012 ACAAACTGCTACTTGCTGGTTAA 58.796 39.130 0.00 0.00 46.47 2.01
1430 1524 3.815809 ACAAACTGCTACTTGCTGGTTA 58.184 40.909 0.00 0.00 46.47 2.85
1475 1574 6.014012 GGGCTAAATCTAGATCCTCTACAGT 58.986 44.000 5.51 0.00 0.00 3.55
1486 1585 3.647636 ACAGAGCAGGGCTAAATCTAGA 58.352 45.455 0.00 0.00 39.88 2.43
1529 1630 6.375455 CCTTGTCCAATCTACAACTTGCTAAT 59.625 38.462 0.00 0.00 33.45 1.73
1673 1779 1.943340 GCCCTGCTCAAAGTGCTATAC 59.057 52.381 0.00 0.00 0.00 1.47
1680 1786 4.488790 CAGTGCCCTGCTCAAAGT 57.511 55.556 0.00 0.00 0.00 2.66
1694 1800 4.404715 TCCTATAGCCTTTCGTTTAGCAGT 59.595 41.667 0.00 0.00 0.00 4.40
1696 1802 5.546621 ATCCTATAGCCTTTCGTTTAGCA 57.453 39.130 0.00 0.00 0.00 3.49
1766 1873 3.431572 CGCTCCTCAAAATCAGCTATAGC 59.568 47.826 17.33 17.33 42.49 2.97
1780 1887 1.521457 CAAATAGCGGCGCTCCTCA 60.521 57.895 39.97 22.20 40.44 3.86
1849 1964 7.291416 TGGTACCTCTTGCCAATAAGATATGTA 59.709 37.037 14.36 0.00 36.97 2.29
1893 2008 5.425196 TCCTGAATCATCACATCAGACAA 57.575 39.130 3.70 0.00 42.48 3.18
1939 2054 3.265791 CTGCAAGCTGGACCTAACTTAG 58.734 50.000 0.00 0.00 0.00 2.18
1940 2055 3.334583 CTGCAAGCTGGACCTAACTTA 57.665 47.619 0.00 0.00 0.00 2.24
2081 2203 3.161067 GAGTCCCTCTATGCAGCTATGA 58.839 50.000 0.00 0.00 0.00 2.15
2130 2253 3.243434 CGACTAACACCACATAGGCCTAG 60.243 52.174 19.33 12.53 43.14 3.02
2132 2255 1.480954 CGACTAACACCACATAGGCCT 59.519 52.381 11.78 11.78 43.14 5.19
2138 2261 3.650139 GTTGACTCGACTAACACCACAT 58.350 45.455 0.00 0.00 0.00 3.21
2140 2263 2.049228 CGTTGACTCGACTAACACCAC 58.951 52.381 0.00 0.00 0.00 4.16
2141 2264 1.948834 TCGTTGACTCGACTAACACCA 59.051 47.619 0.00 0.00 34.85 4.17
2147 2270 0.376152 GGCGATCGTTGACTCGACTA 59.624 55.000 17.81 0.00 42.56 2.59
2148 2271 1.136984 GGCGATCGTTGACTCGACT 59.863 57.895 17.81 0.00 42.56 4.18
2151 2274 0.924363 CGTAGGCGATCGTTGACTCG 60.924 60.000 17.81 10.44 41.33 4.18
2180 5595 1.455383 AACCCTGAGCAAAACGGCTG 61.455 55.000 0.00 0.00 45.99 4.85
2183 5598 1.539827 CCTAAACCCTGAGCAAAACGG 59.460 52.381 0.00 0.00 0.00 4.44
2208 5623 2.035632 CTCCCCTAGAGGTGTCATCAC 58.964 57.143 0.00 0.00 43.19 3.06
2209 5624 2.461300 CTCCCCTAGAGGTGTCATCA 57.539 55.000 0.00 0.00 39.13 3.07
2233 5651 2.928361 CACGCAGTTGTCACCGTC 59.072 61.111 0.00 0.00 41.61 4.79
2237 5655 3.409856 ACAGCACGCAGTTGTCAC 58.590 55.556 0.00 0.00 41.61 3.67
2242 5660 2.356313 CCGAGACAGCACGCAGTT 60.356 61.111 0.00 0.00 41.61 3.16
2276 5694 4.755266 ATAAGATACCCACTCACACCAC 57.245 45.455 0.00 0.00 0.00 4.16
2322 5740 1.758280 AGGGAAAACCGGGTGAAAAAC 59.242 47.619 6.32 0.00 46.96 2.43
2346 5765 3.141409 AAACCAGATTGCCCGGTTT 57.859 47.368 0.00 0.00 45.84 3.27
2350 5769 1.154035 GCGAAAACCAGATTGCCCG 60.154 57.895 0.00 0.00 0.00 6.13
2395 5815 5.125417 CCCGCATTCATTAGGAAGAAAAGAA 59.875 40.000 0.00 0.00 39.30 2.52
2406 5826 2.227388 GCAGGATTCCCGCATTCATTAG 59.773 50.000 6.02 0.00 37.58 1.73
2417 5837 1.134098 TCTCGAAATGGCAGGATTCCC 60.134 52.381 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.