Multiple sequence alignment - TraesCS5D01G349900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G349900 chr5D 100.000 2474 0 0 1 2474 434549662 434547189 0.000000e+00 4569.0
1 TraesCS5D01G349900 chr5D 83.621 812 81 21 698 1488 434600522 434599742 0.000000e+00 715.0
2 TraesCS5D01G349900 chr5D 83.567 712 68 25 724 1411 434567261 434566575 2.700000e-174 621.0
3 TraesCS5D01G349900 chr5D 81.291 759 78 31 754 1488 434688447 434689165 7.730000e-155 556.0
4 TraesCS5D01G349900 chr5D 78.735 569 66 32 759 1304 434666564 434667100 1.830000e-86 329.0
5 TraesCS5D01G349900 chr5D 76.320 701 105 36 742 1410 434480044 434480715 3.970000e-83 318.0
6 TraesCS5D01G349900 chr5D 83.003 353 47 11 1013 1365 434675699 434676038 8.590000e-80 307.0
7 TraesCS5D01G349900 chr5D 73.896 498 88 21 996 1492 434679290 434678834 7.080000e-36 161.0
8 TraesCS5D01G349900 chr5D 98.438 64 1 0 1 64 275608129 275608192 2.010000e-21 113.0
9 TraesCS5D01G349900 chr5D 98.438 64 1 0 1 64 393843276 393843213 2.010000e-21 113.0
10 TraesCS5D01G349900 chr5D 90.110 91 4 2 350 435 434666426 434666516 2.010000e-21 113.0
11 TraesCS5D01G349900 chr5A 83.808 772 74 23 738 1488 548658119 548657378 0.000000e+00 686.0
12 TraesCS5D01G349900 chr5A 79.091 770 96 45 742 1485 548503658 548504388 1.040000e-128 470.0
13 TraesCS5D01G349900 chr5A 100.000 64 0 0 1 64 9506121 9506058 4.320000e-23 119.0
14 TraesCS5D01G349900 chr5B 83.333 768 82 23 749 1488 527492249 527491500 0.000000e+00 667.0
15 TraesCS5D01G349900 chr5B 81.919 813 91 24 698 1488 527769617 527768839 9.650000e-179 636.0
16 TraesCS5D01G349900 chr5B 81.807 786 88 22 724 1488 527601584 527600833 2.100000e-170 608.0
17 TraesCS5D01G349900 chr5B 77.927 521 67 28 69 573 527492762 527492274 5.210000e-72 281.0
18 TraesCS5D01G349900 chr5B 75.789 570 66 42 686 1211 527247864 527248405 3.200000e-54 222.0
19 TraesCS5D01G349900 chr5B 85.227 176 17 3 91 265 527770207 527770040 3.270000e-39 172.0
20 TraesCS5D01G349900 chr5B 94.505 91 4 1 698 787 527784050 527783960 3.320000e-29 139.0
21 TraesCS5D01G349900 chr5B 85.227 88 3 2 496 573 527784173 527784086 5.670000e-12 82.4
22 TraesCS5D01G349900 chr1B 87.251 502 48 2 1676 2161 583753316 583752815 2.150000e-155 558.0
23 TraesCS5D01G349900 chr1B 87.462 327 29 3 2158 2474 583752671 583752347 1.400000e-97 366.0
24 TraesCS5D01G349900 chr1B 94.681 94 5 0 267 360 593927077 593927170 1.980000e-31 147.0
25 TraesCS5D01G349900 chr3A 83.368 481 61 11 1681 2143 203417810 203418289 6.320000e-116 427.0
26 TraesCS5D01G349900 chr2D 98.837 86 1 0 266 351 382455939 382456024 1.180000e-33 154.0
27 TraesCS5D01G349900 chr2D 96.667 90 3 0 265 354 534925551 534925462 1.530000e-32 150.0
28 TraesCS5D01G349900 chr2D 82.000 150 22 5 1948 2096 567960496 567960641 3.340000e-24 122.0
29 TraesCS5D01G349900 chr2D 100.000 64 0 0 1 64 146464093 146464030 4.320000e-23 119.0
30 TraesCS5D01G349900 chr6D 96.703 91 2 1 265 355 199210414 199210325 1.530000e-32 150.0
31 TraesCS5D01G349900 chr6D 98.438 64 1 0 1 64 472884399 472884336 2.010000e-21 113.0
32 TraesCS5D01G349900 chr6A 98.810 84 1 0 698 781 483061831 483061748 1.530000e-32 150.0
33 TraesCS5D01G349900 chr4B 98.810 84 1 0 698 781 508608036 508607953 1.530000e-32 150.0
34 TraesCS5D01G349900 chr3D 98.810 84 1 0 698 781 536960156 536960239 1.530000e-32 150.0
35 TraesCS5D01G349900 chr3B 95.745 94 3 1 259 352 65214147 65214055 1.530000e-32 150.0
36 TraesCS5D01G349900 chr3B 94.000 100 5 1 261 359 113917156 113917057 1.530000e-32 150.0
37 TraesCS5D01G349900 chr3B 95.349 86 4 0 267 352 551513888 551513973 1.190000e-28 137.0
38 TraesCS5D01G349900 chr2A 96.629 89 3 0 264 352 432581626 432581714 5.510000e-32 148.0
39 TraesCS5D01G349900 chr7D 97.619 84 2 0 698 781 454416232 454416315 7.130000e-31 145.0
40 TraesCS5D01G349900 chr7D 91.429 105 6 3 248 351 632404698 632404596 9.220000e-30 141.0
41 TraesCS5D01G349900 chr1D 100.000 64 0 0 1 64 324756560 324756623 4.320000e-23 119.0
42 TraesCS5D01G349900 chr1A 100.000 64 0 0 1 64 550624911 550624974 4.320000e-23 119.0
43 TraesCS5D01G349900 chr4D 98.438 64 1 0 1 64 56738884 56738821 2.010000e-21 113.0
44 TraesCS5D01G349900 chr4D 98.438 64 1 0 1 64 64353073 64353010 2.010000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G349900 chr5D 434547189 434549662 2473 True 4569 4569 100.0000 1 2474 1 chr5D.!!$R2 2473
1 TraesCS5D01G349900 chr5D 434599742 434600522 780 True 715 715 83.6210 698 1488 1 chr5D.!!$R4 790
2 TraesCS5D01G349900 chr5D 434566575 434567261 686 True 621 621 83.5670 724 1411 1 chr5D.!!$R3 687
3 TraesCS5D01G349900 chr5D 434688447 434689165 718 False 556 556 81.2910 754 1488 1 chr5D.!!$F4 734
4 TraesCS5D01G349900 chr5D 434480044 434480715 671 False 318 318 76.3200 742 1410 1 chr5D.!!$F2 668
5 TraesCS5D01G349900 chr5D 434666426 434667100 674 False 221 329 84.4225 350 1304 2 chr5D.!!$F5 954
6 TraesCS5D01G349900 chr5A 548657378 548658119 741 True 686 686 83.8080 738 1488 1 chr5A.!!$R2 750
7 TraesCS5D01G349900 chr5A 548503658 548504388 730 False 470 470 79.0910 742 1485 1 chr5A.!!$F1 743
8 TraesCS5D01G349900 chr5B 527600833 527601584 751 True 608 608 81.8070 724 1488 1 chr5B.!!$R1 764
9 TraesCS5D01G349900 chr5B 527491500 527492762 1262 True 474 667 80.6300 69 1488 2 chr5B.!!$R2 1419
10 TraesCS5D01G349900 chr5B 527768839 527770207 1368 True 404 636 83.5730 91 1488 2 chr5B.!!$R3 1397
11 TraesCS5D01G349900 chr5B 527247864 527248405 541 False 222 222 75.7890 686 1211 1 chr5B.!!$F1 525
12 TraesCS5D01G349900 chr1B 583752347 583753316 969 True 462 558 87.3565 1676 2474 2 chr1B.!!$R1 798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.24746 CCAGAGTCTGATTGTCGCCA 59.753 55.0 22.09 0.0 32.44 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 1688 0.031585 AGTTAGTGTGACTGCGCGAA 59.968 50.0 12.1 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.550830 CACCTTCTGTGGTTACTGCT 57.449 50.000 0.00 0.00 41.52 4.24
25 26 2.417719 CACCTTCTGTGGTTACTGCTC 58.582 52.381 0.00 0.00 41.52 4.26
26 27 1.348036 ACCTTCTGTGGTTACTGCTCC 59.652 52.381 0.00 0.00 36.89 4.70
27 28 1.339151 CCTTCTGTGGTTACTGCTCCC 60.339 57.143 0.00 0.00 0.00 4.30
28 29 0.320374 TTCTGTGGTTACTGCTCCCG 59.680 55.000 0.00 0.00 0.00 5.14
29 30 1.079127 CTGTGGTTACTGCTCCCGG 60.079 63.158 0.00 0.00 0.00 5.73
30 31 1.827399 CTGTGGTTACTGCTCCCGGT 61.827 60.000 0.00 0.00 0.00 5.28
31 32 1.079336 GTGGTTACTGCTCCCGGTC 60.079 63.158 0.00 0.00 0.00 4.79
32 33 1.534476 TGGTTACTGCTCCCGGTCA 60.534 57.895 0.00 0.00 0.00 4.02
33 34 1.218316 GGTTACTGCTCCCGGTCAG 59.782 63.158 12.36 12.36 36.45 3.51
34 35 1.218316 GTTACTGCTCCCGGTCAGG 59.782 63.158 16.63 0.00 40.63 3.86
35 36 1.229082 TTACTGCTCCCGGTCAGGT 60.229 57.895 16.63 5.39 38.74 4.00
36 37 1.255667 TTACTGCTCCCGGTCAGGTC 61.256 60.000 16.63 0.00 38.74 3.85
37 38 2.435120 TACTGCTCCCGGTCAGGTCA 62.435 60.000 16.63 0.80 38.74 4.02
38 39 3.302347 CTGCTCCCGGTCAGGTCAC 62.302 68.421 0.00 0.00 38.74 3.67
39 40 4.083862 GCTCCCGGTCAGGTCACC 62.084 72.222 0.00 0.00 38.74 4.02
40 41 3.391382 CTCCCGGTCAGGTCACCC 61.391 72.222 0.00 0.00 38.74 4.61
41 42 4.242586 TCCCGGTCAGGTCACCCA 62.243 66.667 0.00 0.00 38.74 4.51
42 43 3.706373 CCCGGTCAGGTCACCCAG 61.706 72.222 0.00 0.00 38.74 4.45
43 44 2.603473 CCGGTCAGGTCACCCAGA 60.603 66.667 0.00 0.00 31.99 3.86
44 45 2.650116 CCGGTCAGGTCACCCAGAG 61.650 68.421 0.00 0.00 31.99 3.35
45 46 1.908793 CGGTCAGGTCACCCAGAGT 60.909 63.158 0.00 0.00 31.99 3.24
46 47 1.878656 CGGTCAGGTCACCCAGAGTC 61.879 65.000 0.00 0.00 31.99 3.36
47 48 0.543174 GGTCAGGTCACCCAGAGTCT 60.543 60.000 0.00 0.00 0.00 3.24
48 49 0.605589 GTCAGGTCACCCAGAGTCTG 59.394 60.000 13.56 13.56 32.84 3.51
49 50 0.482887 TCAGGTCACCCAGAGTCTGA 59.517 55.000 22.09 0.00 36.19 3.27
50 51 1.077828 TCAGGTCACCCAGAGTCTGAT 59.922 52.381 22.09 6.38 34.67 2.90
51 52 1.905215 CAGGTCACCCAGAGTCTGATT 59.095 52.381 22.09 4.67 33.16 2.57
52 53 1.905215 AGGTCACCCAGAGTCTGATTG 59.095 52.381 22.09 16.50 32.44 2.67
53 54 1.625818 GGTCACCCAGAGTCTGATTGT 59.374 52.381 22.09 12.20 32.44 2.71
54 55 2.354203 GGTCACCCAGAGTCTGATTGTC 60.354 54.545 22.09 13.91 32.44 3.18
55 56 1.546029 TCACCCAGAGTCTGATTGTCG 59.454 52.381 22.09 3.31 32.44 4.35
56 57 0.247736 ACCCAGAGTCTGATTGTCGC 59.752 55.000 22.09 0.00 32.44 5.19
57 58 0.460987 CCCAGAGTCTGATTGTCGCC 60.461 60.000 22.09 0.00 32.44 5.54
58 59 0.247460 CCAGAGTCTGATTGTCGCCA 59.753 55.000 22.09 0.00 32.44 5.69
59 60 1.638133 CAGAGTCTGATTGTCGCCAG 58.362 55.000 15.46 0.00 32.44 4.85
60 61 1.203287 CAGAGTCTGATTGTCGCCAGA 59.797 52.381 15.46 0.00 37.11 3.86
61 62 1.895798 AGAGTCTGATTGTCGCCAGAA 59.104 47.619 0.00 0.00 40.64 3.02
62 63 2.094286 AGAGTCTGATTGTCGCCAGAAG 60.094 50.000 0.00 0.00 40.64 2.85
63 64 1.895798 AGTCTGATTGTCGCCAGAAGA 59.104 47.619 0.00 0.00 40.64 2.87
64 65 2.094286 AGTCTGATTGTCGCCAGAAGAG 60.094 50.000 0.00 0.00 40.64 2.85
65 66 1.895798 TCTGATTGTCGCCAGAAGAGT 59.104 47.619 0.00 0.00 36.58 3.24
66 67 2.094494 TCTGATTGTCGCCAGAAGAGTC 60.094 50.000 0.00 0.00 36.58 3.36
67 68 1.895798 TGATTGTCGCCAGAAGAGTCT 59.104 47.619 0.00 0.00 32.85 3.24
78 79 3.685139 AGAAGAGTCTGATTTGCCGAA 57.315 42.857 0.00 0.00 30.83 4.30
79 80 3.594134 AGAAGAGTCTGATTTGCCGAAG 58.406 45.455 0.00 0.00 30.83 3.79
80 81 3.007398 AGAAGAGTCTGATTTGCCGAAGT 59.993 43.478 0.00 0.00 30.83 3.01
81 82 2.693069 AGAGTCTGATTTGCCGAAGTG 58.307 47.619 0.00 0.00 0.00 3.16
82 83 2.300152 AGAGTCTGATTTGCCGAAGTGA 59.700 45.455 0.00 0.00 0.00 3.41
83 84 3.055530 AGAGTCTGATTTGCCGAAGTGAT 60.056 43.478 0.00 0.00 0.00 3.06
84 85 4.160439 AGAGTCTGATTTGCCGAAGTGATA 59.840 41.667 0.00 0.00 0.00 2.15
85 86 5.028549 AGTCTGATTTGCCGAAGTGATAT 57.971 39.130 0.00 0.00 0.00 1.63
86 87 6.040955 AGAGTCTGATTTGCCGAAGTGATATA 59.959 38.462 0.00 0.00 0.00 0.86
87 88 6.763355 AGTCTGATTTGCCGAAGTGATATAT 58.237 36.000 0.00 0.00 0.00 0.86
129 130 2.297701 AGTCCACTCGTGCAAAAATGT 58.702 42.857 0.00 0.00 0.00 2.71
158 159 3.981071 TTTCCACAGGACATCGATCTT 57.019 42.857 0.00 0.00 0.00 2.40
159 160 2.967599 TCCACAGGACATCGATCTTG 57.032 50.000 0.00 0.00 0.00 3.02
171 172 6.703607 GGACATCGATCTTGTTATGTTCAGAT 59.296 38.462 0.00 0.00 32.87 2.90
172 173 7.225538 GGACATCGATCTTGTTATGTTCAGATT 59.774 37.037 0.00 0.00 32.87 2.40
173 174 8.498054 ACATCGATCTTGTTATGTTCAGATTT 57.502 30.769 0.00 0.00 0.00 2.17
174 175 8.950210 ACATCGATCTTGTTATGTTCAGATTTT 58.050 29.630 0.00 0.00 0.00 1.82
268 344 8.480643 AACATGAGCTACTTGTAATCTTGTAC 57.519 34.615 0.00 0.00 36.16 2.90
270 346 7.976734 ACATGAGCTACTTGTAATCTTGTACTC 59.023 37.037 0.00 0.00 35.57 2.59
275 351 5.678955 ACTTGTAATCTTGTACTCCCTCC 57.321 43.478 0.00 0.00 0.00 4.30
278 354 4.858850 TGTAATCTTGTACTCCCTCCGTA 58.141 43.478 0.00 0.00 0.00 4.02
279 355 5.263599 TGTAATCTTGTACTCCCTCCGTAA 58.736 41.667 0.00 0.00 0.00 3.18
280 356 5.716228 TGTAATCTTGTACTCCCTCCGTAAA 59.284 40.000 0.00 0.00 0.00 2.01
281 357 5.340439 AATCTTGTACTCCCTCCGTAAAG 57.660 43.478 0.00 0.00 0.00 1.85
285 361 5.482878 TCTTGTACTCCCTCCGTAAAGAAAT 59.517 40.000 0.00 0.00 0.00 2.17
286 362 6.664816 TCTTGTACTCCCTCCGTAAAGAAATA 59.335 38.462 0.00 0.00 0.00 1.40
291 367 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
292 368 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
293 369 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
294 370 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
300 376 7.010738 CCGTAAAGAAATATAAGAGCGTTTGGA 59.989 37.037 0.00 0.00 0.00 3.53
301 377 8.548721 CGTAAAGAAATATAAGAGCGTTTGGAT 58.451 33.333 0.00 0.00 0.00 3.41
302 378 9.865484 GTAAAGAAATATAAGAGCGTTTGGATC 57.135 33.333 0.00 0.00 0.00 3.36
303 379 8.506168 AAAGAAATATAAGAGCGTTTGGATCA 57.494 30.769 0.00 0.00 32.03 2.92
304 380 7.484035 AGAAATATAAGAGCGTTTGGATCAC 57.516 36.000 0.00 0.00 32.03 3.06
309 385 6.910536 ATAAGAGCGTTTGGATCACTAAAG 57.089 37.500 0.00 0.00 32.03 1.85
311 387 5.401531 AGAGCGTTTGGATCACTAAAGTA 57.598 39.130 0.00 0.00 32.03 2.24
312 388 5.411781 AGAGCGTTTGGATCACTAAAGTAG 58.588 41.667 0.00 0.00 32.03 2.57
313 389 5.047235 AGAGCGTTTGGATCACTAAAGTAGT 60.047 40.000 0.00 0.00 40.28 2.73
347 423 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
380 456 2.154462 GTGTGTGGACCATTGAAGAGG 58.846 52.381 0.00 0.00 0.00 3.69
390 466 6.434028 TGGACCATTGAAGAGGTTTTATCTTG 59.566 38.462 0.00 0.00 38.50 3.02
399 478 6.899393 AGAGGTTTTATCTTGTTGCATGAA 57.101 33.333 0.00 0.00 0.00 2.57
406 485 2.574450 TCTTGTTGCATGAACAGCTCA 58.426 42.857 0.00 0.00 45.43 4.26
410 489 1.605710 GTTGCATGAACAGCTCACACT 59.394 47.619 0.00 0.00 36.69 3.55
411 490 1.232119 TGCATGAACAGCTCACACTG 58.768 50.000 0.00 0.00 43.59 3.66
452 535 4.042187 AGGGGCCACTCTATACATTTCATC 59.958 45.833 0.00 0.00 0.00 2.92
479 563 8.758829 TCGTAATATATGATTAATCAGGCACCT 58.241 33.333 21.97 8.05 40.64 4.00
509 598 1.266718 AGTTTGTATGTGGTTGCGCAG 59.733 47.619 11.31 0.00 0.00 5.18
620 709 9.703892 TTTTTGGTAAACCATTGAAGATATGTG 57.296 29.630 1.96 0.00 46.97 3.21
621 710 6.449635 TGGTAAACCATTGAAGATATGTGC 57.550 37.500 0.00 0.00 42.01 4.57
622 711 5.359576 TGGTAAACCATTGAAGATATGTGCC 59.640 40.000 0.00 0.00 42.01 5.01
623 712 5.594317 GGTAAACCATTGAAGATATGTGCCT 59.406 40.000 0.00 0.00 35.64 4.75
624 713 5.587388 AAACCATTGAAGATATGTGCCTG 57.413 39.130 0.00 0.00 0.00 4.85
625 714 4.240881 ACCATTGAAGATATGTGCCTGT 57.759 40.909 0.00 0.00 0.00 4.00
626 715 3.949754 ACCATTGAAGATATGTGCCTGTG 59.050 43.478 0.00 0.00 0.00 3.66
627 716 3.243301 CCATTGAAGATATGTGCCTGTGC 60.243 47.826 0.00 0.00 38.26 4.57
645 734 4.241590 GTGCAATCACAACAGAAATGGA 57.758 40.909 0.00 0.00 42.66 3.41
646 735 3.983344 GTGCAATCACAACAGAAATGGAC 59.017 43.478 0.00 0.00 42.66 4.02
647 736 3.005684 TGCAATCACAACAGAAATGGACC 59.994 43.478 0.00 0.00 0.00 4.46
648 737 3.614870 GCAATCACAACAGAAATGGACCC 60.615 47.826 0.00 0.00 0.00 4.46
649 738 3.524095 ATCACAACAGAAATGGACCCA 57.476 42.857 0.00 0.00 0.00 4.51
650 739 3.304911 TCACAACAGAAATGGACCCAA 57.695 42.857 0.00 0.00 0.00 4.12
651 740 3.843422 TCACAACAGAAATGGACCCAAT 58.157 40.909 0.00 0.00 0.00 3.16
652 741 4.222336 TCACAACAGAAATGGACCCAATT 58.778 39.130 0.00 0.00 0.00 2.32
653 742 4.653341 TCACAACAGAAATGGACCCAATTT 59.347 37.500 0.00 0.00 0.00 1.82
654 743 5.835819 TCACAACAGAAATGGACCCAATTTA 59.164 36.000 0.00 0.00 0.00 1.40
655 744 6.496565 TCACAACAGAAATGGACCCAATTTAT 59.503 34.615 0.00 0.00 0.00 1.40
656 745 6.591062 CACAACAGAAATGGACCCAATTTATG 59.409 38.462 9.31 9.31 34.02 1.90
657 746 5.343307 ACAGAAATGGACCCAATTTATGC 57.657 39.130 10.35 0.00 31.83 3.14
658 747 4.776837 ACAGAAATGGACCCAATTTATGCA 59.223 37.500 10.35 0.00 31.83 3.96
659 748 5.426185 ACAGAAATGGACCCAATTTATGCAT 59.574 36.000 3.79 3.79 31.83 3.96
660 749 5.756347 CAGAAATGGACCCAATTTATGCATG 59.244 40.000 10.16 0.00 0.00 4.06
661 750 4.693042 AATGGACCCAATTTATGCATGG 57.307 40.909 10.16 2.33 0.00 3.66
662 751 3.113191 TGGACCCAATTTATGCATGGT 57.887 42.857 10.16 6.65 32.13 3.55
663 752 3.030291 TGGACCCAATTTATGCATGGTC 58.970 45.455 18.73 18.73 37.24 4.02
664 753 3.299503 GGACCCAATTTATGCATGGTCT 58.700 45.455 23.42 2.02 37.76 3.85
665 754 3.319122 GGACCCAATTTATGCATGGTCTC 59.681 47.826 23.42 14.09 37.76 3.36
675 764 3.758755 TGCATGGTCTCCATATCAGTC 57.241 47.619 0.74 0.00 43.15 3.51
676 765 3.040477 TGCATGGTCTCCATATCAGTCA 58.960 45.455 0.74 0.00 43.15 3.41
677 766 3.649502 TGCATGGTCTCCATATCAGTCAT 59.350 43.478 0.74 0.00 43.15 3.06
678 767 4.840115 TGCATGGTCTCCATATCAGTCATA 59.160 41.667 0.74 0.00 43.15 2.15
679 768 5.174395 GCATGGTCTCCATATCAGTCATAC 58.826 45.833 0.74 0.00 43.15 2.39
680 769 5.405797 CATGGTCTCCATATCAGTCATACG 58.594 45.833 0.74 0.00 43.15 3.06
681 770 3.255888 TGGTCTCCATATCAGTCATACGC 59.744 47.826 0.00 0.00 0.00 4.42
683 772 3.508012 GTCTCCATATCAGTCATACGCCT 59.492 47.826 0.00 0.00 0.00 5.52
684 773 4.700692 GTCTCCATATCAGTCATACGCCTA 59.299 45.833 0.00 0.00 0.00 3.93
686 775 5.416013 TCTCCATATCAGTCATACGCCTAAG 59.584 44.000 0.00 0.00 0.00 2.18
687 776 4.082190 TCCATATCAGTCATACGCCTAAGC 60.082 45.833 0.00 0.00 0.00 3.09
688 777 4.321974 CCATATCAGTCATACGCCTAAGCA 60.322 45.833 0.00 0.00 39.83 3.91
689 778 5.414360 CATATCAGTCATACGCCTAAGCAT 58.586 41.667 0.00 0.00 39.83 3.79
690 779 3.097877 TCAGTCATACGCCTAAGCATG 57.902 47.619 0.00 0.00 39.83 4.06
691 780 1.528586 CAGTCATACGCCTAAGCATGC 59.471 52.381 10.51 10.51 39.83 4.06
692 781 1.414181 AGTCATACGCCTAAGCATGCT 59.586 47.619 16.30 16.30 39.83 3.79
693 782 2.628178 AGTCATACGCCTAAGCATGCTA 59.372 45.455 23.00 3.08 39.83 3.49
694 783 3.259374 AGTCATACGCCTAAGCATGCTAT 59.741 43.478 23.00 13.67 39.83 2.97
695 784 3.369147 GTCATACGCCTAAGCATGCTATG 59.631 47.826 23.00 18.31 39.83 2.23
696 785 3.258123 TCATACGCCTAAGCATGCTATGA 59.742 43.478 23.00 20.31 39.83 2.15
938 1065 2.356022 CCATCAGATTAGCACCACCACA 60.356 50.000 0.00 0.00 0.00 4.17
945 1109 0.537143 TAGCACCACCACAAGCCAAG 60.537 55.000 0.00 0.00 0.00 3.61
977 1142 3.253432 CCACACCTAGCCAAGAAAGAAAC 59.747 47.826 0.00 0.00 0.00 2.78
989 1165 4.092116 AGAAAGAAACACAAGGAGGAGG 57.908 45.455 0.00 0.00 0.00 4.30
995 1171 2.640316 ACACAAGGAGGAGGAAACAC 57.360 50.000 0.00 0.00 0.00 3.32
997 1173 2.158755 ACACAAGGAGGAGGAAACACAG 60.159 50.000 0.00 0.00 0.00 3.66
998 1174 1.202818 ACAAGGAGGAGGAAACACAGC 60.203 52.381 0.00 0.00 0.00 4.40
1038 1214 2.555757 ACTTGCTCAGATGGCAAAGAAC 59.444 45.455 0.00 0.00 46.81 3.01
1109 1285 3.717294 AGCGGCGAAAGGGTCCAT 61.717 61.111 12.98 0.00 0.00 3.41
1110 1286 3.202706 GCGGCGAAAGGGTCCATC 61.203 66.667 12.98 0.00 0.00 3.51
1111 1287 2.267642 CGGCGAAAGGGTCCATCA 59.732 61.111 0.00 0.00 0.00 3.07
1112 1288 1.153168 CGGCGAAAGGGTCCATCAT 60.153 57.895 0.00 0.00 0.00 2.45
1113 1289 0.105964 CGGCGAAAGGGTCCATCATA 59.894 55.000 0.00 0.00 0.00 2.15
1114 1290 1.873903 CGGCGAAAGGGTCCATCATAG 60.874 57.143 0.00 0.00 0.00 2.23
1115 1291 1.416401 GGCGAAAGGGTCCATCATAGA 59.584 52.381 0.00 0.00 0.00 1.98
1116 1292 2.548920 GGCGAAAGGGTCCATCATAGAG 60.549 54.545 0.00 0.00 0.00 2.43
1117 1293 2.365617 GCGAAAGGGTCCATCATAGAGA 59.634 50.000 0.00 0.00 0.00 3.10
1132 1308 2.096220 AGAGAATGAGTGCAGCACAG 57.904 50.000 27.35 0.00 36.74 3.66
1134 1310 1.134075 GAATGAGTGCAGCACAGCG 59.866 57.895 27.35 0.00 36.74 5.18
1135 1311 1.572085 GAATGAGTGCAGCACAGCGT 61.572 55.000 27.35 16.48 36.74 5.07
1136 1312 1.168407 AATGAGTGCAGCACAGCGTT 61.168 50.000 27.35 20.87 36.74 4.84
1231 1407 4.467084 CATACCCCAGCACGGCGT 62.467 66.667 6.77 6.77 0.00 5.68
1251 1427 1.153667 CTTCAGCGAGCTCCTGACC 60.154 63.158 25.45 5.04 38.93 4.02
1265 1441 2.262774 CTGACCATGTCCCAGGAGGC 62.263 65.000 0.00 0.00 34.51 4.70
1299 1475 1.153168 CGGCAATGACGGGAGGATT 60.153 57.895 0.00 0.00 0.00 3.01
1377 1553 1.186200 CCTCCGTGGAAGTCATGAGA 58.814 55.000 0.00 0.00 38.35 3.27
1379 1555 1.821753 CTCCGTGGAAGTCATGAGAGT 59.178 52.381 0.00 0.00 34.35 3.24
1423 1599 2.126580 GCAGCAGCTTTGAAGGCG 60.127 61.111 0.00 0.00 37.91 5.52
1455 1633 0.464373 CATGCGTAGGGCTTGGTCAT 60.464 55.000 0.00 0.00 41.69 3.06
1456 1634 0.464373 ATGCGTAGGGCTTGGTCATG 60.464 55.000 0.00 0.00 44.05 3.07
1466 1644 1.399791 GCTTGGTCATGAAGTAGCTGC 59.600 52.381 13.89 0.00 0.00 5.25
1474 1657 5.171476 GTCATGAAGTAGCTGCTTGTTAGA 58.829 41.667 22.52 10.96 0.00 2.10
1480 1663 4.764172 AGTAGCTGCTTGTTAGATTCTGG 58.236 43.478 7.79 0.00 0.00 3.86
1488 1671 5.189180 GCTTGTTAGATTCTGGAGAATGGT 58.811 41.667 6.61 0.00 44.14 3.55
1489 1672 5.295540 GCTTGTTAGATTCTGGAGAATGGTC 59.704 44.000 6.61 0.00 44.14 4.02
1490 1673 6.373005 TTGTTAGATTCTGGAGAATGGTCA 57.627 37.500 6.61 0.00 44.14 4.02
1491 1674 5.982356 TGTTAGATTCTGGAGAATGGTCAG 58.018 41.667 6.61 0.00 44.14 3.51
1492 1675 5.485353 TGTTAGATTCTGGAGAATGGTCAGT 59.515 40.000 6.61 0.00 44.14 3.41
1493 1676 4.751767 AGATTCTGGAGAATGGTCAGTC 57.248 45.455 6.61 0.00 44.14 3.51
1494 1677 4.360889 AGATTCTGGAGAATGGTCAGTCT 58.639 43.478 6.61 0.25 44.14 3.24
1495 1678 3.969287 TTCTGGAGAATGGTCAGTCTG 57.031 47.619 5.63 0.00 35.71 3.51
1496 1679 2.182827 TCTGGAGAATGGTCAGTCTGG 58.817 52.381 5.63 0.00 35.71 3.86
1497 1680 0.615331 TGGAGAATGGTCAGTCTGGC 59.385 55.000 5.63 0.00 35.71 4.85
1498 1681 0.615331 GGAGAATGGTCAGTCTGGCA 59.385 55.000 6.80 0.00 35.71 4.92
1499 1682 1.211457 GGAGAATGGTCAGTCTGGCAT 59.789 52.381 6.80 0.00 35.71 4.40
1500 1683 2.286872 GAGAATGGTCAGTCTGGCATG 58.713 52.381 6.80 0.00 35.71 4.06
1501 1684 0.737219 GAATGGTCAGTCTGGCATGC 59.263 55.000 9.90 9.90 0.00 4.06
1502 1685 0.330604 AATGGTCAGTCTGGCATGCT 59.669 50.000 18.92 0.00 0.00 3.79
1503 1686 0.330604 ATGGTCAGTCTGGCATGCTT 59.669 50.000 18.92 0.00 0.00 3.91
1504 1687 0.607217 TGGTCAGTCTGGCATGCTTG 60.607 55.000 18.92 10.75 0.00 4.01
1505 1688 0.607489 GGTCAGTCTGGCATGCTTGT 60.607 55.000 18.92 0.00 0.00 3.16
1506 1689 1.242076 GTCAGTCTGGCATGCTTGTT 58.758 50.000 18.92 0.00 0.00 2.83
1507 1690 1.198637 GTCAGTCTGGCATGCTTGTTC 59.801 52.381 18.92 0.10 0.00 3.18
1508 1691 0.167470 CAGTCTGGCATGCTTGTTCG 59.833 55.000 18.92 0.00 0.00 3.95
1509 1692 1.154150 GTCTGGCATGCTTGTTCGC 60.154 57.895 18.92 0.00 0.00 4.70
1510 1693 2.202388 CTGGCATGCTTGTTCGCG 60.202 61.111 18.92 0.00 0.00 5.87
1511 1694 4.403137 TGGCATGCTTGTTCGCGC 62.403 61.111 18.92 0.00 0.00 6.86
1512 1695 4.403137 GGCATGCTTGTTCGCGCA 62.403 61.111 18.92 0.00 40.87 6.09
1513 1696 2.872925 GCATGCTTGTTCGCGCAG 60.873 61.111 11.37 0.00 39.82 5.18
1514 1697 2.557805 CATGCTTGTTCGCGCAGT 59.442 55.556 8.75 0.00 39.82 4.40
1515 1698 1.510623 CATGCTTGTTCGCGCAGTC 60.511 57.895 8.75 0.00 39.82 3.51
1516 1699 1.960763 ATGCTTGTTCGCGCAGTCA 60.961 52.632 8.75 0.00 39.82 3.41
1517 1700 2.127609 GCTTGTTCGCGCAGTCAC 60.128 61.111 8.75 0.00 0.00 3.67
1518 1701 2.881266 GCTTGTTCGCGCAGTCACA 61.881 57.895 8.75 0.39 0.00 3.58
1519 1702 1.083401 CTTGTTCGCGCAGTCACAC 60.083 57.895 8.75 0.00 0.00 3.82
1520 1703 1.490693 CTTGTTCGCGCAGTCACACT 61.491 55.000 8.75 0.00 0.00 3.55
1521 1704 0.249114 TTGTTCGCGCAGTCACACTA 60.249 50.000 8.75 0.00 0.00 2.74
1522 1705 0.249114 TGTTCGCGCAGTCACACTAA 60.249 50.000 8.75 0.00 0.00 2.24
1523 1706 0.161024 GTTCGCGCAGTCACACTAAC 59.839 55.000 8.75 0.00 0.00 2.34
1524 1707 0.031585 TTCGCGCAGTCACACTAACT 59.968 50.000 8.75 0.00 0.00 2.24
1525 1708 0.876399 TCGCGCAGTCACACTAACTA 59.124 50.000 8.75 0.00 0.00 2.24
1526 1709 1.471287 TCGCGCAGTCACACTAACTAT 59.529 47.619 8.75 0.00 0.00 2.12
1527 1710 2.094906 TCGCGCAGTCACACTAACTATT 60.095 45.455 8.75 0.00 0.00 1.73
1528 1711 2.666508 CGCGCAGTCACACTAACTATTT 59.333 45.455 8.75 0.00 0.00 1.40
1529 1712 3.241678 CGCGCAGTCACACTAACTATTTC 60.242 47.826 8.75 0.00 0.00 2.17
1530 1713 3.678072 GCGCAGTCACACTAACTATTTCA 59.322 43.478 0.30 0.00 0.00 2.69
1531 1714 4.151689 GCGCAGTCACACTAACTATTTCAA 59.848 41.667 0.30 0.00 0.00 2.69
1532 1715 5.668866 GCGCAGTCACACTAACTATTTCAAG 60.669 44.000 0.30 0.00 0.00 3.02
1533 1716 5.633601 CGCAGTCACACTAACTATTTCAAGA 59.366 40.000 0.00 0.00 0.00 3.02
1534 1717 6.183360 CGCAGTCACACTAACTATTTCAAGAG 60.183 42.308 0.00 0.00 0.00 2.85
1535 1718 6.868864 GCAGTCACACTAACTATTTCAAGAGA 59.131 38.462 0.00 0.00 0.00 3.10
1536 1719 7.062839 GCAGTCACACTAACTATTTCAAGAGAG 59.937 40.741 0.00 0.00 0.00 3.20
1537 1720 8.300286 CAGTCACACTAACTATTTCAAGAGAGA 58.700 37.037 0.00 0.00 0.00 3.10
1538 1721 8.519526 AGTCACACTAACTATTTCAAGAGAGAG 58.480 37.037 0.00 0.00 0.00 3.20
1539 1722 8.516234 GTCACACTAACTATTTCAAGAGAGAGA 58.484 37.037 0.00 0.00 0.00 3.10
1540 1723 9.078990 TCACACTAACTATTTCAAGAGAGAGAA 57.921 33.333 0.00 0.00 0.00 2.87
1541 1724 9.134734 CACACTAACTATTTCAAGAGAGAGAAC 57.865 37.037 0.00 0.00 0.00 3.01
1542 1725 8.861086 ACACTAACTATTTCAAGAGAGAGAACA 58.139 33.333 0.00 0.00 0.00 3.18
1543 1726 9.868277 CACTAACTATTTCAAGAGAGAGAACAT 57.132 33.333 0.00 0.00 0.00 2.71
1546 1729 8.770438 AACTATTTCAAGAGAGAGAACATCAC 57.230 34.615 0.00 0.00 0.00 3.06
1547 1730 7.327214 ACTATTTCAAGAGAGAGAACATCACC 58.673 38.462 0.00 0.00 0.00 4.02
1548 1731 5.815233 TTTCAAGAGAGAGAACATCACCT 57.185 39.130 0.00 0.00 0.00 4.00
1549 1732 6.918067 TTTCAAGAGAGAGAACATCACCTA 57.082 37.500 0.00 0.00 0.00 3.08
1550 1733 5.906113 TCAAGAGAGAGAACATCACCTAC 57.094 43.478 0.00 0.00 0.00 3.18
1551 1734 4.707448 TCAAGAGAGAGAACATCACCTACC 59.293 45.833 0.00 0.00 0.00 3.18
1552 1735 4.323569 AGAGAGAGAACATCACCTACCA 57.676 45.455 0.00 0.00 0.00 3.25
1553 1736 4.277476 AGAGAGAGAACATCACCTACCAG 58.723 47.826 0.00 0.00 0.00 4.00
1554 1737 4.017958 AGAGAGAGAACATCACCTACCAGA 60.018 45.833 0.00 0.00 0.00 3.86
1555 1738 4.277476 AGAGAGAACATCACCTACCAGAG 58.723 47.826 0.00 0.00 0.00 3.35
1556 1739 4.020543 GAGAGAACATCACCTACCAGAGT 58.979 47.826 0.00 0.00 0.00 3.24
1557 1740 3.766591 AGAGAACATCACCTACCAGAGTG 59.233 47.826 0.00 0.00 35.24 3.51
1558 1741 2.834549 AGAACATCACCTACCAGAGTGG 59.165 50.000 0.00 0.00 45.02 4.00
1570 1753 3.492102 CCAGAGTGGTATTGGTATGGG 57.508 52.381 0.00 0.00 31.35 4.00
1571 1754 2.106511 CCAGAGTGGTATTGGTATGGGG 59.893 54.545 0.00 0.00 31.35 4.96
1572 1755 2.106511 CAGAGTGGTATTGGTATGGGGG 59.893 54.545 0.00 0.00 0.00 5.40
1573 1756 0.850784 AGTGGTATTGGTATGGGGGC 59.149 55.000 0.00 0.00 0.00 5.80
1574 1757 0.553819 GTGGTATTGGTATGGGGGCA 59.446 55.000 0.00 0.00 0.00 5.36
1575 1758 1.063567 GTGGTATTGGTATGGGGGCAA 60.064 52.381 0.00 0.00 0.00 4.52
1576 1759 1.216678 TGGTATTGGTATGGGGGCAAG 59.783 52.381 0.00 0.00 0.00 4.01
1577 1760 1.216930 GGTATTGGTATGGGGGCAAGT 59.783 52.381 0.00 0.00 0.00 3.16
1578 1761 2.358826 GGTATTGGTATGGGGGCAAGTT 60.359 50.000 0.00 0.00 0.00 2.66
1579 1762 2.159179 ATTGGTATGGGGGCAAGTTC 57.841 50.000 0.00 0.00 0.00 3.01
1580 1763 0.780637 TTGGTATGGGGGCAAGTTCA 59.219 50.000 0.00 0.00 0.00 3.18
1581 1764 0.780637 TGGTATGGGGGCAAGTTCAA 59.219 50.000 0.00 0.00 0.00 2.69
1582 1765 1.272425 TGGTATGGGGGCAAGTTCAAG 60.272 52.381 0.00 0.00 0.00 3.02
1583 1766 0.817654 GTATGGGGGCAAGTTCAAGC 59.182 55.000 0.00 0.00 0.00 4.01
1584 1767 0.407528 TATGGGGGCAAGTTCAAGCA 59.592 50.000 0.00 0.00 0.00 3.91
1585 1768 0.901580 ATGGGGGCAAGTTCAAGCAG 60.902 55.000 0.00 0.00 0.00 4.24
1586 1769 2.278330 GGGGGCAAGTTCAAGCAGG 61.278 63.158 0.00 0.00 0.00 4.85
1587 1770 2.278330 GGGGCAAGTTCAAGCAGGG 61.278 63.158 0.00 0.00 0.00 4.45
1588 1771 1.531602 GGGCAAGTTCAAGCAGGGT 60.532 57.895 0.00 0.00 0.00 4.34
1589 1772 0.251165 GGGCAAGTTCAAGCAGGGTA 60.251 55.000 0.00 0.00 0.00 3.69
1590 1773 1.616159 GGCAAGTTCAAGCAGGGTAA 58.384 50.000 0.00 0.00 0.00 2.85
1591 1774 1.960689 GGCAAGTTCAAGCAGGGTAAA 59.039 47.619 0.00 0.00 0.00 2.01
1592 1775 2.029918 GGCAAGTTCAAGCAGGGTAAAG 60.030 50.000 0.00 0.00 0.00 1.85
1593 1776 2.608016 GCAAGTTCAAGCAGGGTAAAGC 60.608 50.000 0.00 0.00 0.00 3.51
1594 1777 2.887152 CAAGTTCAAGCAGGGTAAAGCT 59.113 45.455 0.00 0.00 44.31 3.74
1600 1783 2.777832 AGCAGGGTAAAGCTTCTCAG 57.222 50.000 0.00 0.00 38.01 3.35
1601 1784 2.260822 AGCAGGGTAAAGCTTCTCAGA 58.739 47.619 0.00 0.00 38.01 3.27
1602 1785 2.639839 AGCAGGGTAAAGCTTCTCAGAA 59.360 45.455 0.00 0.00 38.01 3.02
1603 1786 3.006247 GCAGGGTAAAGCTTCTCAGAAG 58.994 50.000 10.38 10.38 0.00 2.85
1604 1787 3.307059 GCAGGGTAAAGCTTCTCAGAAGA 60.307 47.826 19.27 0.00 0.00 2.87
1605 1788 4.804261 GCAGGGTAAAGCTTCTCAGAAGAA 60.804 45.833 19.27 1.66 39.22 2.52
1618 1801 6.749036 TCTCAGAAGAAGAAAAAGTAGGGT 57.251 37.500 0.00 0.00 0.00 4.34
1619 1802 7.850935 TCTCAGAAGAAGAAAAAGTAGGGTA 57.149 36.000 0.00 0.00 0.00 3.69
1620 1803 8.258850 TCTCAGAAGAAGAAAAAGTAGGGTAA 57.741 34.615 0.00 0.00 0.00 2.85
1621 1804 8.148999 TCTCAGAAGAAGAAAAAGTAGGGTAAC 58.851 37.037 0.00 0.00 0.00 2.50
1622 1805 8.030913 TCAGAAGAAGAAAAAGTAGGGTAACT 57.969 34.615 0.00 0.00 0.00 2.24
1623 1806 8.491958 TCAGAAGAAGAAAAAGTAGGGTAACTT 58.508 33.333 0.00 0.00 41.46 2.66
1632 1815 6.954487 AAAGTAGGGTAACTTTTTCCACAG 57.046 37.500 0.00 0.00 45.20 3.66
1633 1816 5.899631 AGTAGGGTAACTTTTTCCACAGA 57.100 39.130 0.00 0.00 0.00 3.41
1634 1817 6.256643 AGTAGGGTAACTTTTTCCACAGAA 57.743 37.500 0.00 0.00 0.00 3.02
1635 1818 6.665695 AGTAGGGTAACTTTTTCCACAGAAA 58.334 36.000 0.00 0.00 40.26 2.52
1659 1842 7.462571 AAGGTTTCTTTTGTTGTTGTAGAGT 57.537 32.000 0.00 0.00 0.00 3.24
1660 1843 7.462571 AGGTTTCTTTTGTTGTTGTAGAGTT 57.537 32.000 0.00 0.00 0.00 3.01
1661 1844 8.570068 AGGTTTCTTTTGTTGTTGTAGAGTTA 57.430 30.769 0.00 0.00 0.00 2.24
1662 1845 9.016438 AGGTTTCTTTTGTTGTTGTAGAGTTAA 57.984 29.630 0.00 0.00 0.00 2.01
1663 1846 9.069078 GGTTTCTTTTGTTGTTGTAGAGTTAAC 57.931 33.333 0.00 0.00 0.00 2.01
1664 1847 8.782327 GTTTCTTTTGTTGTTGTAGAGTTAACG 58.218 33.333 0.00 0.00 0.00 3.18
1665 1848 7.599630 TCTTTTGTTGTTGTAGAGTTAACGT 57.400 32.000 0.00 0.00 0.00 3.99
1666 1849 8.031848 TCTTTTGTTGTTGTAGAGTTAACGTT 57.968 30.769 5.88 5.88 0.00 3.99
1667 1850 8.505625 TCTTTTGTTGTTGTAGAGTTAACGTTT 58.494 29.630 5.91 0.00 0.00 3.60
1668 1851 8.437443 TTTTGTTGTTGTAGAGTTAACGTTTG 57.563 30.769 5.91 0.00 0.00 2.93
1669 1852 5.561993 TGTTGTTGTAGAGTTAACGTTTGC 58.438 37.500 5.91 0.00 0.00 3.68
1670 1853 5.121925 TGTTGTTGTAGAGTTAACGTTTGCA 59.878 36.000 5.91 0.00 0.00 4.08
1671 1854 5.994887 TGTTGTAGAGTTAACGTTTGCAT 57.005 34.783 5.91 0.00 0.00 3.96
1672 1855 5.743467 TGTTGTAGAGTTAACGTTTGCATG 58.257 37.500 5.91 0.00 0.00 4.06
1673 1856 5.524281 TGTTGTAGAGTTAACGTTTGCATGA 59.476 36.000 5.91 0.00 0.00 3.07
1674 1857 6.037281 TGTTGTAGAGTTAACGTTTGCATGAA 59.963 34.615 5.91 0.00 0.00 2.57
1679 1862 0.519519 TAACGTTTGCATGAAGGCCG 59.480 50.000 5.91 0.00 0.00 6.13
1701 1884 1.165270 GCTACAAATCAACCGGCTGT 58.835 50.000 0.00 0.00 0.00 4.40
1727 1910 1.735571 TGAAGATTTAAACCGCCTCGC 59.264 47.619 0.00 0.00 0.00 5.03
1732 1915 0.952010 TTTAAACCGCCTCGCTGACC 60.952 55.000 0.00 0.00 0.00 4.02
1737 1920 2.126228 CGCCTCGCTGACCGTTTA 60.126 61.111 0.00 0.00 38.35 2.01
1749 1932 0.323087 ACCGTTTAATCAGCCCCACC 60.323 55.000 0.00 0.00 0.00 4.61
1753 1937 2.243810 GTTTAATCAGCCCCACCAACA 58.756 47.619 0.00 0.00 0.00 3.33
1772 1956 2.762459 TCGGATCCTTCCCCACCG 60.762 66.667 10.75 0.00 44.09 4.94
1773 1957 4.547367 CGGATCCTTCCCCACCGC 62.547 72.222 10.75 0.00 39.01 5.68
1828 2027 0.684805 GCCCTCCTTCTCTCCTTCGA 60.685 60.000 0.00 0.00 0.00 3.71
1832 2031 3.295973 CCTCCTTCTCTCCTTCGATCTT 58.704 50.000 0.00 0.00 0.00 2.40
1841 2040 0.933097 CCTTCGATCTTGCATCACCG 59.067 55.000 0.00 0.00 0.00 4.94
1843 2042 0.461870 TTCGATCTTGCATCACCGGG 60.462 55.000 6.32 0.00 0.00 5.73
1869 2068 3.655810 GACGAGGGCTGCACCTGAG 62.656 68.421 13.37 9.87 42.10 3.35
1896 2095 3.118454 CGACCGGCGTTGCTTCAT 61.118 61.111 6.01 0.00 34.64 2.57
1897 2096 2.480555 GACCGGCGTTGCTTCATG 59.519 61.111 6.01 0.00 0.00 3.07
1965 2164 1.645455 CGGCGATGCTCCATTGAAG 59.355 57.895 0.00 0.00 0.00 3.02
1966 2165 1.358046 GGCGATGCTCCATTGAAGC 59.642 57.895 0.00 0.00 0.00 3.86
1970 2169 1.469703 CGATGCTCCATTGAAGCACAA 59.530 47.619 0.00 0.00 41.61 3.33
1974 2173 0.169672 CTCCATTGAAGCACAAGCCG 59.830 55.000 3.11 0.00 43.56 5.52
1992 2191 0.042361 CGCTTCGATGCTGCTTCATC 60.042 55.000 19.63 8.19 39.47 2.92
2003 2202 3.025619 CTTCATCGCAATCCCGGC 58.974 61.111 0.00 0.00 0.00 6.13
2036 2235 1.996786 GCTCCATTGCATCACGGGTG 61.997 60.000 0.00 0.00 0.00 4.61
2043 2242 3.716195 CATCACGGGTGGCCCTCA 61.716 66.667 0.00 0.00 42.67 3.86
2045 2244 3.924013 ATCACGGGTGGCCCTCAGA 62.924 63.158 0.00 0.00 42.67 3.27
2061 2260 3.014623 CTCAGATGAAGCTCCATTGCAA 58.985 45.455 0.00 0.00 34.99 4.08
2064 2263 2.490903 AGATGAAGCTCCATTGCAACAC 59.509 45.455 0.00 0.00 34.99 3.32
2069 2268 0.242017 GCTCCATTGCAACACTGGAC 59.758 55.000 14.87 9.35 38.09 4.02
2118 2317 2.097978 ATGGCCCCCAACAAAGCTCT 62.098 55.000 0.00 0.00 36.95 4.09
2123 2322 1.668419 CCCCAACAAAGCTCTATCGG 58.332 55.000 0.00 0.00 0.00 4.18
2127 2326 1.090052 AACAAAGCTCTATCGGCGGC 61.090 55.000 7.21 0.00 34.52 6.53
2189 2535 0.953727 GATGCAATGCGGGATGCTAA 59.046 50.000 0.00 0.00 46.63 3.09
2202 2548 2.483714 GGATGCTAAGATGCAGAACCGA 60.484 50.000 0.00 0.00 46.71 4.69
2203 2549 2.010145 TGCTAAGATGCAGAACCGAC 57.990 50.000 0.00 0.00 38.12 4.79
2205 2551 1.560923 CTAAGATGCAGAACCGACGG 58.439 55.000 13.61 13.61 0.00 4.79
2210 2556 3.499737 GCAGAACCGACGGCCATG 61.500 66.667 15.39 11.02 0.00 3.66
2218 2564 1.153568 CGACGGCCATGACAGATGT 60.154 57.895 2.24 0.00 0.00 3.06
2229 2575 2.433145 CAGATGTCGCGGTGCAGT 60.433 61.111 6.13 0.00 0.00 4.40
2230 2576 2.029288 CAGATGTCGCGGTGCAGTT 61.029 57.895 6.13 0.00 0.00 3.16
2231 2577 0.735978 CAGATGTCGCGGTGCAGTTA 60.736 55.000 6.13 0.00 0.00 2.24
2291 2637 2.811317 GAAGCTGTGGCGAGGACG 60.811 66.667 0.00 0.00 44.37 4.79
2300 2646 2.257676 GCGAGGACGACGGAAAGT 59.742 61.111 0.00 0.00 42.66 2.66
2309 2655 1.626654 CGACGGAAAGTTGCGATGCT 61.627 55.000 12.05 0.00 45.24 3.79
2433 2789 2.674754 GTGGGCGGAGGGAATGAA 59.325 61.111 0.00 0.00 0.00 2.57
2435 2791 1.001393 TGGGCGGAGGGAATGAAAC 60.001 57.895 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.132762 GTAACCACAGAAGGTGTCACG 58.867 52.381 0.00 0.00 46.44 4.35
1 2 3.131396 CAGTAACCACAGAAGGTGTCAC 58.869 50.000 0.00 0.00 46.44 3.67
3 4 2.143925 GCAGTAACCACAGAAGGTGTC 58.856 52.381 0.00 0.00 46.44 3.67
4 5 1.768870 AGCAGTAACCACAGAAGGTGT 59.231 47.619 0.00 0.00 46.44 4.16
6 7 1.348036 GGAGCAGTAACCACAGAAGGT 59.652 52.381 0.00 0.00 45.91 3.50
7 8 1.339151 GGGAGCAGTAACCACAGAAGG 60.339 57.143 0.00 0.00 0.00 3.46
8 9 1.673033 CGGGAGCAGTAACCACAGAAG 60.673 57.143 0.00 0.00 0.00 2.85
9 10 0.320374 CGGGAGCAGTAACCACAGAA 59.680 55.000 0.00 0.00 0.00 3.02
11 12 1.079127 CCGGGAGCAGTAACCACAG 60.079 63.158 0.00 0.00 0.00 3.66
12 13 1.823169 GACCGGGAGCAGTAACCACA 61.823 60.000 6.32 0.00 0.00 4.17
13 14 1.079336 GACCGGGAGCAGTAACCAC 60.079 63.158 6.32 0.00 0.00 4.16
15 16 1.218316 CTGACCGGGAGCAGTAACC 59.782 63.158 6.32 0.00 0.00 2.85
16 17 1.218316 CCTGACCGGGAGCAGTAAC 59.782 63.158 6.32 0.00 0.00 2.50
17 18 1.229082 ACCTGACCGGGAGCAGTAA 60.229 57.895 6.32 0.00 36.97 2.24
18 19 1.681327 GACCTGACCGGGAGCAGTA 60.681 63.158 6.32 0.00 36.97 2.74
19 20 2.997897 GACCTGACCGGGAGCAGT 60.998 66.667 6.32 0.00 36.97 4.40
20 21 2.997315 TGACCTGACCGGGAGCAG 60.997 66.667 6.32 10.37 36.97 4.24
21 22 3.311110 GTGACCTGACCGGGAGCA 61.311 66.667 6.32 0.00 36.97 4.26
22 23 4.083862 GGTGACCTGACCGGGAGC 62.084 72.222 6.32 0.00 36.97 4.70
34 35 2.672478 CGACAATCAGACTCTGGGTGAC 60.672 54.545 13.73 8.60 31.51 3.67
35 36 1.546029 CGACAATCAGACTCTGGGTGA 59.454 52.381 13.73 0.00 31.51 4.02
36 37 2.001812 CGACAATCAGACTCTGGGTG 57.998 55.000 6.20 7.17 31.51 4.61
37 38 0.247736 GCGACAATCAGACTCTGGGT 59.752 55.000 6.20 2.90 31.51 4.51
38 39 0.460987 GGCGACAATCAGACTCTGGG 60.461 60.000 6.20 0.00 31.51 4.45
39 40 0.247460 TGGCGACAATCAGACTCTGG 59.753 55.000 6.20 0.00 37.44 3.86
40 41 1.203287 TCTGGCGACAATCAGACTCTG 59.797 52.381 0.00 0.00 42.06 3.35
41 42 1.550327 TCTGGCGACAATCAGACTCT 58.450 50.000 0.00 0.00 42.06 3.24
42 43 2.094494 TCTTCTGGCGACAATCAGACTC 60.094 50.000 0.00 0.00 42.06 3.36
43 44 1.895798 TCTTCTGGCGACAATCAGACT 59.104 47.619 0.00 0.00 42.06 3.24
44 45 2.266554 CTCTTCTGGCGACAATCAGAC 58.733 52.381 0.00 0.00 42.06 3.51
45 46 1.895798 ACTCTTCTGGCGACAATCAGA 59.104 47.619 0.00 0.00 42.06 3.27
46 47 2.094286 AGACTCTTCTGGCGACAATCAG 60.094 50.000 0.00 0.00 42.06 2.90
47 48 1.895798 AGACTCTTCTGGCGACAATCA 59.104 47.619 0.00 0.00 42.06 2.57
48 49 2.266554 CAGACTCTTCTGGCGACAATC 58.733 52.381 0.00 0.00 45.06 2.67
49 50 2.376808 CAGACTCTTCTGGCGACAAT 57.623 50.000 0.00 0.00 45.06 2.71
50 51 3.894257 CAGACTCTTCTGGCGACAA 57.106 52.632 0.00 0.00 45.06 3.18
58 59 3.007398 ACTTCGGCAAATCAGACTCTTCT 59.993 43.478 0.00 0.00 0.00 2.85
59 60 3.124297 CACTTCGGCAAATCAGACTCTTC 59.876 47.826 0.00 0.00 0.00 2.87
60 61 3.070018 CACTTCGGCAAATCAGACTCTT 58.930 45.455 0.00 0.00 0.00 2.85
61 62 2.300152 TCACTTCGGCAAATCAGACTCT 59.700 45.455 0.00 0.00 0.00 3.24
62 63 2.688507 TCACTTCGGCAAATCAGACTC 58.311 47.619 0.00 0.00 0.00 3.36
63 64 2.839486 TCACTTCGGCAAATCAGACT 57.161 45.000 0.00 0.00 0.00 3.24
64 65 7.426929 AATATATCACTTCGGCAAATCAGAC 57.573 36.000 0.00 0.00 0.00 3.51
65 66 9.154847 CATAATATATCACTTCGGCAAATCAGA 57.845 33.333 0.00 0.00 0.00 3.27
66 67 9.154847 TCATAATATATCACTTCGGCAAATCAG 57.845 33.333 0.00 0.00 0.00 2.90
67 68 9.500785 TTCATAATATATCACTTCGGCAAATCA 57.499 29.630 0.00 0.00 0.00 2.57
70 71 8.564574 GGTTTCATAATATATCACTTCGGCAAA 58.435 33.333 0.00 0.00 0.00 3.68
71 72 7.095397 CGGTTTCATAATATATCACTTCGGCAA 60.095 37.037 0.00 0.00 0.00 4.52
72 73 6.367695 CGGTTTCATAATATATCACTTCGGCA 59.632 38.462 0.00 0.00 0.00 5.69
73 74 6.367969 ACGGTTTCATAATATATCACTTCGGC 59.632 38.462 0.00 0.00 0.00 5.54
74 75 7.597369 TCACGGTTTCATAATATATCACTTCGG 59.403 37.037 0.00 0.00 0.00 4.30
75 76 8.515473 TCACGGTTTCATAATATATCACTTCG 57.485 34.615 0.00 0.00 0.00 3.79
77 78 9.996554 TGATCACGGTTTCATAATATATCACTT 57.003 29.630 0.00 0.00 0.00 3.16
78 79 9.996554 TTGATCACGGTTTCATAATATATCACT 57.003 29.630 0.00 0.00 0.00 3.41
80 81 9.996554 ACTTGATCACGGTTTCATAATATATCA 57.003 29.630 4.03 0.00 0.00 2.15
82 83 9.996554 TCACTTGATCACGGTTTCATAATATAT 57.003 29.630 4.03 0.00 0.00 0.86
83 84 9.825109 TTCACTTGATCACGGTTTCATAATATA 57.175 29.630 4.03 0.00 0.00 0.86
84 85 8.731275 TTCACTTGATCACGGTTTCATAATAT 57.269 30.769 4.03 0.00 0.00 1.28
85 86 7.822334 ACTTCACTTGATCACGGTTTCATAATA 59.178 33.333 4.03 0.00 0.00 0.98
86 87 6.655003 ACTTCACTTGATCACGGTTTCATAAT 59.345 34.615 4.03 0.00 0.00 1.28
87 88 5.995282 ACTTCACTTGATCACGGTTTCATAA 59.005 36.000 4.03 0.00 0.00 1.90
95 96 2.069273 GTGGACTTCACTTGATCACGG 58.931 52.381 4.03 0.00 42.86 4.94
107 108 3.243068 ACATTTTTGCACGAGTGGACTTC 60.243 43.478 5.32 0.00 0.00 3.01
129 130 6.712998 TCGATGTCCTGTGGAAAAATTCTAAA 59.287 34.615 0.00 0.00 31.38 1.85
174 175 4.681074 AAATGCGAGGAAAAGGGAAAAA 57.319 36.364 0.00 0.00 0.00 1.94
176 177 4.681074 AAAAATGCGAGGAAAAGGGAAA 57.319 36.364 0.00 0.00 0.00 3.13
221 225 7.199766 TGTTTGGTAGCTGAACTATTGTTTTG 58.800 34.615 0.00 0.00 36.39 2.44
268 344 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
270 346 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
275 351 7.902032 TCCAAACGCTCTTATATTTCTTTACG 58.098 34.615 0.00 0.00 0.00 3.18
278 354 8.398665 GTGATCCAAACGCTCTTATATTTCTTT 58.601 33.333 0.00 0.00 0.00 2.52
279 355 7.770897 AGTGATCCAAACGCTCTTATATTTCTT 59.229 33.333 0.00 0.00 0.00 2.52
280 356 7.275920 AGTGATCCAAACGCTCTTATATTTCT 58.724 34.615 0.00 0.00 0.00 2.52
281 357 7.484035 AGTGATCCAAACGCTCTTATATTTC 57.516 36.000 0.00 0.00 0.00 2.17
285 361 7.553334 ACTTTAGTGATCCAAACGCTCTTATA 58.447 34.615 0.00 0.00 0.00 0.98
286 362 6.407202 ACTTTAGTGATCCAAACGCTCTTAT 58.593 36.000 0.00 0.00 0.00 1.73
291 367 5.148651 ACTACTTTAGTGATCCAAACGCT 57.851 39.130 0.00 0.00 37.69 5.07
322 398 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
323 399 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
335 411 4.211920 AGCTAGCTACTCCCTCTGTAAAG 58.788 47.826 17.69 0.00 0.00 1.85
336 412 4.252570 AGCTAGCTACTCCCTCTGTAAA 57.747 45.455 17.69 0.00 0.00 2.01
337 413 3.955524 AGCTAGCTACTCCCTCTGTAA 57.044 47.619 17.69 0.00 0.00 2.41
338 414 3.328343 CCTAGCTAGCTACTCCCTCTGTA 59.672 52.174 20.67 0.00 0.00 2.74
342 418 2.158579 ACACCTAGCTAGCTACTCCCTC 60.159 54.545 20.67 0.00 0.00 4.30
347 423 2.025226 TCCACACACCTAGCTAGCTACT 60.025 50.000 20.67 5.89 0.00 2.57
380 456 5.922544 AGCTGTTCATGCAACAAGATAAAAC 59.077 36.000 10.54 0.00 44.71 2.43
390 466 1.605710 AGTGTGAGCTGTTCATGCAAC 59.394 47.619 0.00 0.00 38.29 4.17
399 478 3.771479 TGGAGATATTCAGTGTGAGCTGT 59.229 43.478 0.00 0.00 37.70 4.40
406 485 3.006323 GCCGAGATGGAGATATTCAGTGT 59.994 47.826 0.00 0.00 42.00 3.55
410 489 2.564504 CCTGCCGAGATGGAGATATTCA 59.435 50.000 0.00 0.00 42.00 2.57
411 490 2.093764 CCCTGCCGAGATGGAGATATTC 60.094 54.545 0.00 0.00 42.00 1.75
452 535 9.035607 GGTGCCTGATTAATCATATATTACGAG 57.964 37.037 18.26 3.22 36.02 4.18
473 557 8.466798 ACATACAAACTAATCAATTTAGGTGCC 58.533 33.333 0.00 0.00 36.81 5.01
479 563 9.632807 GCAACCACATACAAACTAATCAATTTA 57.367 29.630 0.00 0.00 0.00 1.40
483 567 5.694816 CGCAACCACATACAAACTAATCAA 58.305 37.500 0.00 0.00 0.00 2.57
509 598 2.955660 TGGGTCCATTTCTGTTTGTGAC 59.044 45.455 0.00 0.00 0.00 3.67
599 688 5.594317 AGGCACATATCTTCAATGGTTTACC 59.406 40.000 0.00 0.00 0.00 2.85
600 689 6.095440 ACAGGCACATATCTTCAATGGTTTAC 59.905 38.462 0.00 0.00 0.00 2.01
601 690 6.095300 CACAGGCACATATCTTCAATGGTTTA 59.905 38.462 0.00 0.00 0.00 2.01
602 691 5.018809 ACAGGCACATATCTTCAATGGTTT 58.981 37.500 0.00 0.00 0.00 3.27
603 692 4.400251 CACAGGCACATATCTTCAATGGTT 59.600 41.667 0.00 0.00 0.00 3.67
604 693 3.949754 CACAGGCACATATCTTCAATGGT 59.050 43.478 0.00 0.00 0.00 3.55
605 694 3.243301 GCACAGGCACATATCTTCAATGG 60.243 47.826 0.00 0.00 40.72 3.16
606 695 3.961182 GCACAGGCACATATCTTCAATG 58.039 45.455 0.00 0.00 40.72 2.82
624 713 3.983344 GTCCATTTCTGTTGTGATTGCAC 59.017 43.478 0.00 0.00 45.35 4.57
625 714 3.005684 GGTCCATTTCTGTTGTGATTGCA 59.994 43.478 0.00 0.00 0.00 4.08
626 715 3.578688 GGTCCATTTCTGTTGTGATTGC 58.421 45.455 0.00 0.00 0.00 3.56
627 716 3.573538 TGGGTCCATTTCTGTTGTGATTG 59.426 43.478 0.00 0.00 0.00 2.67
628 717 3.843422 TGGGTCCATTTCTGTTGTGATT 58.157 40.909 0.00 0.00 0.00 2.57
629 718 3.524095 TGGGTCCATTTCTGTTGTGAT 57.476 42.857 0.00 0.00 0.00 3.06
630 719 3.304911 TTGGGTCCATTTCTGTTGTGA 57.695 42.857 0.00 0.00 0.00 3.58
631 720 4.605640 AATTGGGTCCATTTCTGTTGTG 57.394 40.909 0.00 0.00 0.00 3.33
632 721 6.700352 CATAAATTGGGTCCATTTCTGTTGT 58.300 36.000 0.00 0.00 0.00 3.32
633 722 5.581874 GCATAAATTGGGTCCATTTCTGTTG 59.418 40.000 0.00 0.00 0.00 3.33
634 723 5.248020 TGCATAAATTGGGTCCATTTCTGTT 59.752 36.000 0.00 0.00 0.00 3.16
635 724 4.776837 TGCATAAATTGGGTCCATTTCTGT 59.223 37.500 0.00 0.00 0.00 3.41
636 725 5.341872 TGCATAAATTGGGTCCATTTCTG 57.658 39.130 0.00 0.00 0.00 3.02
637 726 5.163280 CCATGCATAAATTGGGTCCATTTCT 60.163 40.000 0.00 0.00 0.00 2.52
638 727 5.058490 CCATGCATAAATTGGGTCCATTTC 58.942 41.667 0.00 0.00 0.00 2.17
639 728 4.474287 ACCATGCATAAATTGGGTCCATTT 59.526 37.500 8.12 0.00 34.72 2.32
640 729 4.039339 ACCATGCATAAATTGGGTCCATT 58.961 39.130 8.12 0.00 34.72 3.16
641 730 3.642848 GACCATGCATAAATTGGGTCCAT 59.357 43.478 16.96 0.00 39.05 3.41
642 731 3.030291 GACCATGCATAAATTGGGTCCA 58.970 45.455 16.96 0.00 39.05 4.02
643 732 3.299503 AGACCATGCATAAATTGGGTCC 58.700 45.455 21.75 9.31 44.51 4.46
644 733 3.319122 GGAGACCATGCATAAATTGGGTC 59.681 47.826 19.13 19.13 43.93 4.46
645 734 3.299503 GGAGACCATGCATAAATTGGGT 58.700 45.455 8.12 6.06 34.72 4.51
646 735 3.298619 TGGAGACCATGCATAAATTGGG 58.701 45.455 8.12 2.77 34.72 4.12
647 736 6.434965 TGATATGGAGACCATGCATAAATTGG 59.565 38.462 12.78 0.00 44.32 3.16
648 737 7.176165 ACTGATATGGAGACCATGCATAAATTG 59.824 37.037 12.78 0.00 44.32 2.32
649 738 7.236529 ACTGATATGGAGACCATGCATAAATT 58.763 34.615 12.78 0.00 44.32 1.82
650 739 6.787170 ACTGATATGGAGACCATGCATAAAT 58.213 36.000 12.78 0.00 44.32 1.40
651 740 6.183361 TGACTGATATGGAGACCATGCATAAA 60.183 38.462 12.78 0.00 44.32 1.40
652 741 5.307716 TGACTGATATGGAGACCATGCATAA 59.692 40.000 12.78 0.00 44.32 1.90
653 742 4.840115 TGACTGATATGGAGACCATGCATA 59.160 41.667 12.78 0.00 44.84 3.14
654 743 3.649502 TGACTGATATGGAGACCATGCAT 59.350 43.478 12.78 0.00 44.84 3.96
655 744 3.040477 TGACTGATATGGAGACCATGCA 58.960 45.455 12.78 9.76 44.84 3.96
656 745 3.758755 TGACTGATATGGAGACCATGC 57.241 47.619 12.78 6.14 44.84 4.06
657 746 5.405797 CGTATGACTGATATGGAGACCATG 58.594 45.833 12.78 0.00 44.84 3.66
658 747 4.081972 GCGTATGACTGATATGGAGACCAT 60.082 45.833 8.35 8.35 46.99 3.55
659 748 3.255888 GCGTATGACTGATATGGAGACCA 59.744 47.826 0.00 0.00 38.19 4.02
660 749 3.367498 GGCGTATGACTGATATGGAGACC 60.367 52.174 0.00 0.00 0.00 3.85
661 750 3.508012 AGGCGTATGACTGATATGGAGAC 59.492 47.826 0.00 0.00 25.95 3.36
662 751 3.767711 AGGCGTATGACTGATATGGAGA 58.232 45.455 0.00 0.00 25.95 3.71
663 752 5.644977 TTAGGCGTATGACTGATATGGAG 57.355 43.478 0.00 0.00 33.33 3.86
664 753 4.082190 GCTTAGGCGTATGACTGATATGGA 60.082 45.833 0.00 0.00 33.33 3.41
665 754 4.177026 GCTTAGGCGTATGACTGATATGG 58.823 47.826 0.00 0.00 33.33 2.74
675 764 3.588955 TCATAGCATGCTTAGGCGTATG 58.411 45.455 28.02 20.38 42.25 2.39
676 765 3.961480 TCATAGCATGCTTAGGCGTAT 57.039 42.857 28.02 8.42 42.25 3.06
677 766 3.961480 ATCATAGCATGCTTAGGCGTA 57.039 42.857 28.02 5.94 42.25 4.42
678 767 2.847327 ATCATAGCATGCTTAGGCGT 57.153 45.000 28.02 1.31 42.25 5.68
679 768 4.436332 TCATATCATAGCATGCTTAGGCG 58.564 43.478 28.02 10.14 42.25 5.52
680 769 5.821470 ACATCATATCATAGCATGCTTAGGC 59.179 40.000 28.02 0.00 39.26 3.93
681 770 6.482641 GGACATCATATCATAGCATGCTTAGG 59.517 42.308 28.02 13.83 0.00 2.69
683 772 6.949715 TGGACATCATATCATAGCATGCTTA 58.050 36.000 28.02 12.67 0.00 3.09
684 773 5.812286 TGGACATCATATCATAGCATGCTT 58.188 37.500 28.02 10.52 0.00 3.91
686 775 5.448768 GCTTGGACATCATATCATAGCATGC 60.449 44.000 10.51 10.51 0.00 4.06
687 776 5.646360 TGCTTGGACATCATATCATAGCATG 59.354 40.000 0.00 0.00 0.00 4.06
688 777 5.812286 TGCTTGGACATCATATCATAGCAT 58.188 37.500 0.00 0.00 0.00 3.79
689 778 5.231702 TGCTTGGACATCATATCATAGCA 57.768 39.130 0.00 0.00 0.00 3.49
690 779 6.259608 GGTATGCTTGGACATCATATCATAGC 59.740 42.308 0.00 0.00 0.00 2.97
691 780 6.765036 GGGTATGCTTGGACATCATATCATAG 59.235 42.308 7.29 0.00 0.00 2.23
692 781 6.215227 TGGGTATGCTTGGACATCATATCATA 59.785 38.462 7.29 0.00 0.00 2.15
693 782 5.014438 TGGGTATGCTTGGACATCATATCAT 59.986 40.000 7.29 0.00 0.00 2.45
694 783 4.350520 TGGGTATGCTTGGACATCATATCA 59.649 41.667 7.29 4.09 0.00 2.15
695 784 4.910195 TGGGTATGCTTGGACATCATATC 58.090 43.478 0.00 0.00 0.00 1.63
696 785 4.999469 TGGGTATGCTTGGACATCATAT 57.001 40.909 0.00 0.00 0.00 1.78
945 1109 0.814010 CTAGGTGTGGTAATGCCGCC 60.814 60.000 0.00 0.00 46.96 6.13
977 1142 2.498167 CTGTGTTTCCTCCTCCTTGTG 58.502 52.381 0.00 0.00 0.00 3.33
989 1165 1.267806 CACTGACCATGGCTGTGTTTC 59.732 52.381 24.68 11.77 32.59 2.78
995 1171 1.592400 CTTGGCACTGACCATGGCTG 61.592 60.000 13.04 11.21 42.86 4.85
997 1173 1.303561 TCTTGGCACTGACCATGGC 60.304 57.895 13.04 5.35 40.13 4.40
998 1174 0.325933 TCTCTTGGCACTGACCATGG 59.674 55.000 11.19 11.19 40.13 3.66
1038 1214 3.830192 GCCGCCATCCTTTGCCAG 61.830 66.667 0.00 0.00 0.00 4.85
1044 1220 4.528039 CCCATGGCCGCCATCCTT 62.528 66.667 22.62 0.00 43.15 3.36
1097 1273 4.672587 TTCTCTATGATGGACCCTTTCG 57.327 45.455 0.00 0.00 0.00 3.46
1098 1274 6.179906 TCATTCTCTATGATGGACCCTTTC 57.820 41.667 0.00 0.00 38.35 2.62
1099 1275 5.669447 ACTCATTCTCTATGATGGACCCTTT 59.331 40.000 0.00 0.00 42.26 3.11
1103 1279 4.202295 TGCACTCATTCTCTATGATGGACC 60.202 45.833 0.00 0.00 42.26 4.46
1104 1280 4.953667 TGCACTCATTCTCTATGATGGAC 58.046 43.478 0.00 0.00 42.26 4.02
1105 1281 4.502777 GCTGCACTCATTCTCTATGATGGA 60.503 45.833 0.00 0.00 42.26 3.41
1109 1285 3.196254 TGTGCTGCACTCATTCTCTATGA 59.804 43.478 30.43 5.47 41.14 2.15
1110 1286 3.528532 TGTGCTGCACTCATTCTCTATG 58.471 45.455 30.43 0.00 35.11 2.23
1111 1287 3.794717 CTGTGCTGCACTCATTCTCTAT 58.205 45.455 30.43 0.00 35.11 1.98
1112 1288 2.676176 GCTGTGCTGCACTCATTCTCTA 60.676 50.000 30.43 8.71 35.11 2.43
1113 1289 1.944892 GCTGTGCTGCACTCATTCTCT 60.945 52.381 30.43 0.00 35.11 3.10
1114 1290 0.447011 GCTGTGCTGCACTCATTCTC 59.553 55.000 30.43 5.05 35.11 2.87
1115 1291 1.296755 CGCTGTGCTGCACTCATTCT 61.297 55.000 30.43 0.00 35.11 2.40
1116 1292 1.134075 CGCTGTGCTGCACTCATTC 59.866 57.895 30.43 14.83 35.11 2.67
1117 1293 1.168407 AACGCTGTGCTGCACTCATT 61.168 50.000 30.43 17.44 35.11 2.57
1220 1396 2.664851 TGAAGAACGCCGTGCTGG 60.665 61.111 0.00 0.00 42.50 4.85
1222 1398 3.044305 GCTGAAGAACGCCGTGCT 61.044 61.111 0.00 0.00 0.00 4.40
1231 1407 0.244994 GTCAGGAGCTCGCTGAAGAA 59.755 55.000 26.54 10.35 0.00 2.52
1251 1427 1.450312 GAACGCCTCCTGGGACATG 60.450 63.158 0.00 0.00 38.20 3.21
1265 1441 4.741781 CGCCTGCAAAGCCGAACG 62.742 66.667 2.96 0.00 0.00 3.95
1299 1475 2.592574 GCATCGCAGGGCAGCATA 60.593 61.111 0.00 0.00 0.00 3.14
1324 1500 3.799753 GCACATGGCGTACTCCAG 58.200 61.111 10.87 5.41 39.89 3.86
1377 1553 0.109086 CGACGGAGCTCATGAACACT 60.109 55.000 17.19 0.00 0.00 3.55
1379 1555 1.446099 GCGACGGAGCTCATGAACA 60.446 57.895 17.19 0.00 0.00 3.18
1404 1580 1.590147 GCCTTCAAAGCTGCTGCAT 59.410 52.632 18.42 2.35 42.74 3.96
1455 1633 5.871524 CAGAATCTAACAAGCAGCTACTTCA 59.128 40.000 0.00 0.00 0.00 3.02
1456 1634 5.293079 CCAGAATCTAACAAGCAGCTACTTC 59.707 44.000 0.00 0.00 0.00 3.01
1466 1644 6.409704 TGACCATTCTCCAGAATCTAACAAG 58.590 40.000 0.00 0.00 42.41 3.16
1474 1657 3.199508 CCAGACTGACCATTCTCCAGAAT 59.800 47.826 3.32 0.00 44.93 2.40
1480 1663 2.286872 CATGCCAGACTGACCATTCTC 58.713 52.381 3.32 0.00 0.00 2.87
1488 1671 1.527034 GAACAAGCATGCCAGACTGA 58.473 50.000 15.66 0.00 0.00 3.41
1489 1672 0.167470 CGAACAAGCATGCCAGACTG 59.833 55.000 15.66 6.92 0.00 3.51
1490 1673 1.580845 GCGAACAAGCATGCCAGACT 61.581 55.000 15.66 0.15 37.05 3.24
1491 1674 1.154150 GCGAACAAGCATGCCAGAC 60.154 57.895 15.66 6.49 37.05 3.51
1492 1675 2.679934 CGCGAACAAGCATGCCAGA 61.680 57.895 15.66 0.00 36.85 3.86
1493 1676 2.202388 CGCGAACAAGCATGCCAG 60.202 61.111 15.66 9.93 36.85 4.85
1494 1677 4.403137 GCGCGAACAAGCATGCCA 62.403 61.111 15.66 0.00 36.85 4.92
1495 1678 4.403137 TGCGCGAACAAGCATGCC 62.403 61.111 15.66 0.00 38.59 4.40
1496 1679 2.872925 CTGCGCGAACAAGCATGC 60.873 61.111 12.10 10.51 42.95 4.06
1497 1680 1.510623 GACTGCGCGAACAAGCATG 60.511 57.895 12.10 0.00 42.95 4.06
1498 1681 1.960763 TGACTGCGCGAACAAGCAT 60.961 52.632 12.10 0.00 42.95 3.79
1499 1682 2.587473 TGACTGCGCGAACAAGCA 60.587 55.556 12.10 0.00 41.55 3.91
1500 1683 2.127609 GTGACTGCGCGAACAAGC 60.128 61.111 12.10 0.00 0.00 4.01
1501 1684 1.083401 GTGTGACTGCGCGAACAAG 60.083 57.895 12.10 3.32 0.00 3.16
1502 1685 0.249114 TAGTGTGACTGCGCGAACAA 60.249 50.000 12.10 0.00 0.00 2.83
1503 1686 0.249114 TTAGTGTGACTGCGCGAACA 60.249 50.000 12.10 2.23 0.00 3.18
1504 1687 0.161024 GTTAGTGTGACTGCGCGAAC 59.839 55.000 12.10 0.00 0.00 3.95
1505 1688 0.031585 AGTTAGTGTGACTGCGCGAA 59.968 50.000 12.10 0.00 0.00 4.70
1506 1689 0.876399 TAGTTAGTGTGACTGCGCGA 59.124 50.000 12.10 0.00 0.00 5.87
1507 1690 1.909376 ATAGTTAGTGTGACTGCGCG 58.091 50.000 0.00 0.00 0.00 6.86
1508 1691 3.678072 TGAAATAGTTAGTGTGACTGCGC 59.322 43.478 0.00 0.00 0.00 6.09
1509 1692 5.633601 TCTTGAAATAGTTAGTGTGACTGCG 59.366 40.000 0.00 0.00 0.00 5.18
1510 1693 6.868864 TCTCTTGAAATAGTTAGTGTGACTGC 59.131 38.462 0.00 0.00 0.00 4.40
1511 1694 8.300286 TCTCTCTTGAAATAGTTAGTGTGACTG 58.700 37.037 0.00 0.00 0.00 3.51
1512 1695 8.410673 TCTCTCTTGAAATAGTTAGTGTGACT 57.589 34.615 0.00 0.00 0.00 3.41
1513 1696 8.516234 TCTCTCTCTTGAAATAGTTAGTGTGAC 58.484 37.037 0.00 0.00 0.00 3.67
1514 1697 8.637196 TCTCTCTCTTGAAATAGTTAGTGTGA 57.363 34.615 0.00 0.00 0.00 3.58
1515 1698 9.134734 GTTCTCTCTCTTGAAATAGTTAGTGTG 57.865 37.037 0.00 0.00 0.00 3.82
1516 1699 8.861086 TGTTCTCTCTCTTGAAATAGTTAGTGT 58.139 33.333 0.00 0.00 0.00 3.55
1517 1700 9.868277 ATGTTCTCTCTCTTGAAATAGTTAGTG 57.132 33.333 0.00 0.00 0.00 2.74
1520 1703 9.862371 GTGATGTTCTCTCTCTTGAAATAGTTA 57.138 33.333 0.00 0.00 0.00 2.24
1521 1704 7.821846 GGTGATGTTCTCTCTCTTGAAATAGTT 59.178 37.037 0.00 0.00 0.00 2.24
1522 1705 7.180051 AGGTGATGTTCTCTCTCTTGAAATAGT 59.820 37.037 0.00 0.00 0.00 2.12
1523 1706 7.555087 AGGTGATGTTCTCTCTCTTGAAATAG 58.445 38.462 0.00 0.00 0.00 1.73
1524 1707 7.487822 AGGTGATGTTCTCTCTCTTGAAATA 57.512 36.000 0.00 0.00 0.00 1.40
1525 1708 6.371595 AGGTGATGTTCTCTCTCTTGAAAT 57.628 37.500 0.00 0.00 0.00 2.17
1526 1709 5.815233 AGGTGATGTTCTCTCTCTTGAAA 57.185 39.130 0.00 0.00 0.00 2.69
1527 1710 5.186021 GGTAGGTGATGTTCTCTCTCTTGAA 59.814 44.000 0.00 0.00 0.00 2.69
1528 1711 4.707448 GGTAGGTGATGTTCTCTCTCTTGA 59.293 45.833 0.00 0.00 0.00 3.02
1529 1712 4.464244 TGGTAGGTGATGTTCTCTCTCTTG 59.536 45.833 0.00 0.00 0.00 3.02
1530 1713 4.678256 TGGTAGGTGATGTTCTCTCTCTT 58.322 43.478 0.00 0.00 0.00 2.85
1531 1714 4.017958 TCTGGTAGGTGATGTTCTCTCTCT 60.018 45.833 0.00 0.00 0.00 3.10
1532 1715 4.274147 TCTGGTAGGTGATGTTCTCTCTC 58.726 47.826 0.00 0.00 0.00 3.20
1533 1716 4.264172 ACTCTGGTAGGTGATGTTCTCTCT 60.264 45.833 0.00 0.00 0.00 3.10
1534 1717 4.020543 ACTCTGGTAGGTGATGTTCTCTC 58.979 47.826 0.00 0.00 0.00 3.20
1535 1718 3.766591 CACTCTGGTAGGTGATGTTCTCT 59.233 47.826 0.00 0.00 35.69 3.10
1536 1719 3.118956 CCACTCTGGTAGGTGATGTTCTC 60.119 52.174 0.00 0.00 35.69 2.87
1537 1720 2.834549 CCACTCTGGTAGGTGATGTTCT 59.165 50.000 0.00 0.00 35.69 3.01
1538 1721 3.252974 CCACTCTGGTAGGTGATGTTC 57.747 52.381 0.00 0.00 35.69 3.18
1550 1733 2.106511 CCCCATACCAATACCACTCTGG 59.893 54.545 0.00 0.00 45.02 3.86
1551 1734 2.106511 CCCCCATACCAATACCACTCTG 59.893 54.545 0.00 0.00 0.00 3.35
1552 1735 2.418669 CCCCCATACCAATACCACTCT 58.581 52.381 0.00 0.00 0.00 3.24
1553 1736 1.202891 GCCCCCATACCAATACCACTC 60.203 57.143 0.00 0.00 0.00 3.51
1554 1737 0.850784 GCCCCCATACCAATACCACT 59.149 55.000 0.00 0.00 0.00 4.00
1555 1738 0.553819 TGCCCCCATACCAATACCAC 59.446 55.000 0.00 0.00 0.00 4.16
1556 1739 1.216678 CTTGCCCCCATACCAATACCA 59.783 52.381 0.00 0.00 0.00 3.25
1557 1740 1.216930 ACTTGCCCCCATACCAATACC 59.783 52.381 0.00 0.00 0.00 2.73
1558 1741 2.748209 ACTTGCCCCCATACCAATAC 57.252 50.000 0.00 0.00 0.00 1.89
1559 1742 2.583101 TGAACTTGCCCCCATACCAATA 59.417 45.455 0.00 0.00 0.00 1.90
1560 1743 1.360852 TGAACTTGCCCCCATACCAAT 59.639 47.619 0.00 0.00 0.00 3.16
1561 1744 0.780637 TGAACTTGCCCCCATACCAA 59.219 50.000 0.00 0.00 0.00 3.67
1562 1745 0.780637 TTGAACTTGCCCCCATACCA 59.219 50.000 0.00 0.00 0.00 3.25
1563 1746 1.474330 CTTGAACTTGCCCCCATACC 58.526 55.000 0.00 0.00 0.00 2.73
1564 1747 0.817654 GCTTGAACTTGCCCCCATAC 59.182 55.000 0.00 0.00 0.00 2.39
1565 1748 0.407528 TGCTTGAACTTGCCCCCATA 59.592 50.000 0.00 0.00 0.00 2.74
1566 1749 0.901580 CTGCTTGAACTTGCCCCCAT 60.902 55.000 0.00 0.00 0.00 4.00
1567 1750 1.531365 CTGCTTGAACTTGCCCCCA 60.531 57.895 0.00 0.00 0.00 4.96
1568 1751 2.278330 CCTGCTTGAACTTGCCCCC 61.278 63.158 0.00 0.00 0.00 5.40
1569 1752 2.278330 CCCTGCTTGAACTTGCCCC 61.278 63.158 0.00 0.00 0.00 5.80
1570 1753 0.251165 TACCCTGCTTGAACTTGCCC 60.251 55.000 0.00 0.00 0.00 5.36
1571 1754 1.616159 TTACCCTGCTTGAACTTGCC 58.384 50.000 0.00 0.00 0.00 4.52
1572 1755 2.608016 GCTTTACCCTGCTTGAACTTGC 60.608 50.000 0.00 0.00 0.00 4.01
1573 1756 2.887152 AGCTTTACCCTGCTTGAACTTG 59.113 45.455 0.00 0.00 35.86 3.16
1574 1757 3.229697 AGCTTTACCCTGCTTGAACTT 57.770 42.857 0.00 0.00 35.86 2.66
1575 1758 2.959465 AGCTTTACCCTGCTTGAACT 57.041 45.000 0.00 0.00 35.86 3.01
1581 1764 2.260822 TCTGAGAAGCTTTACCCTGCT 58.739 47.619 0.00 0.00 41.82 4.24
1582 1765 2.770164 TCTGAGAAGCTTTACCCTGC 57.230 50.000 0.00 0.00 0.00 4.85
1583 1766 4.543590 TCTTCTGAGAAGCTTTACCCTG 57.456 45.455 17.14 0.00 0.00 4.45
1594 1777 7.138054 ACCCTACTTTTTCTTCTTCTGAGAA 57.862 36.000 0.00 0.00 39.54 2.87
1595 1778 6.749036 ACCCTACTTTTTCTTCTTCTGAGA 57.251 37.500 0.00 0.00 0.00 3.27
1596 1779 8.151596 AGTTACCCTACTTTTTCTTCTTCTGAG 58.848 37.037 0.00 0.00 0.00 3.35
1597 1780 8.030913 AGTTACCCTACTTTTTCTTCTTCTGA 57.969 34.615 0.00 0.00 0.00 3.27
1598 1781 8.678593 AAGTTACCCTACTTTTTCTTCTTCTG 57.321 34.615 0.00 0.00 34.81 3.02
1610 1793 6.256643 TCTGTGGAAAAAGTTACCCTACTT 57.743 37.500 0.00 0.00 39.97 2.24
1611 1794 5.899631 TCTGTGGAAAAAGTTACCCTACT 57.100 39.130 0.00 0.00 0.00 2.57
1612 1795 6.947644 TTTCTGTGGAAAAAGTTACCCTAC 57.052 37.500 0.00 0.00 38.35 3.18
1613 1796 6.548251 CCTTTTCTGTGGAAAAAGTTACCCTA 59.452 38.462 7.37 0.00 46.57 3.53
1614 1797 5.362717 CCTTTTCTGTGGAAAAAGTTACCCT 59.637 40.000 7.37 0.00 46.57 4.34
1615 1798 5.128171 ACCTTTTCTGTGGAAAAAGTTACCC 59.872 40.000 7.37 0.00 46.57 3.69
1616 1799 6.216801 ACCTTTTCTGTGGAAAAAGTTACC 57.783 37.500 7.37 0.00 46.57 2.85
1617 1800 8.033038 AGAAACCTTTTCTGTGGAAAAAGTTAC 58.967 33.333 14.44 4.93 46.54 2.50
1618 1801 8.129496 AGAAACCTTTTCTGTGGAAAAAGTTA 57.871 30.769 14.44 0.00 46.54 2.24
1620 1803 6.605471 AGAAACCTTTTCTGTGGAAAAAGT 57.395 33.333 0.32 3.37 46.57 2.66
1621 1804 7.905604 AAAGAAACCTTTTCTGTGGAAAAAG 57.094 32.000 1.98 3.18 46.57 2.27
1622 1805 7.717436 ACAAAAGAAACCTTTTCTGTGGAAAAA 59.283 29.630 1.98 0.00 46.57 1.94
1623 1806 7.220740 ACAAAAGAAACCTTTTCTGTGGAAAA 58.779 30.769 1.98 4.28 45.62 2.29
1624 1807 6.764379 ACAAAAGAAACCTTTTCTGTGGAAA 58.236 32.000 1.98 0.00 40.71 3.13
1625 1808 6.353404 ACAAAAGAAACCTTTTCTGTGGAA 57.647 33.333 1.98 0.00 40.71 3.53
1626 1809 5.993748 ACAAAAGAAACCTTTTCTGTGGA 57.006 34.783 1.98 0.00 40.71 4.02
1627 1810 5.931724 ACAACAAAAGAAACCTTTTCTGTGG 59.068 36.000 1.98 0.00 40.71 4.17
1628 1811 7.042119 ACAACAACAAAAGAAACCTTTTCTGTG 60.042 33.333 1.98 6.52 40.71 3.66
1629 1812 6.989759 ACAACAACAAAAGAAACCTTTTCTGT 59.010 30.769 1.98 0.00 40.71 3.41
1630 1813 7.420184 ACAACAACAAAAGAAACCTTTTCTG 57.580 32.000 1.98 0.00 40.71 3.02
1631 1814 8.581578 TCTACAACAACAAAAGAAACCTTTTCT 58.418 29.630 0.00 0.00 40.71 2.52
1632 1815 8.751302 TCTACAACAACAAAAGAAACCTTTTC 57.249 30.769 0.00 0.00 40.71 2.29
1633 1816 8.364894 ACTCTACAACAACAAAAGAAACCTTTT 58.635 29.630 0.00 0.00 42.71 2.27
1634 1817 7.892609 ACTCTACAACAACAAAAGAAACCTTT 58.107 30.769 0.00 0.00 35.52 3.11
1635 1818 7.462571 ACTCTACAACAACAAAAGAAACCTT 57.537 32.000 0.00 0.00 0.00 3.50
1636 1819 7.462571 AACTCTACAACAACAAAAGAAACCT 57.537 32.000 0.00 0.00 0.00 3.50
1637 1820 9.069078 GTTAACTCTACAACAACAAAAGAAACC 57.931 33.333 0.00 0.00 0.00 3.27
1638 1821 8.782327 CGTTAACTCTACAACAACAAAAGAAAC 58.218 33.333 3.71 0.00 0.00 2.78
1639 1822 8.505625 ACGTTAACTCTACAACAACAAAAGAAA 58.494 29.630 3.71 0.00 0.00 2.52
1640 1823 8.031848 ACGTTAACTCTACAACAACAAAAGAA 57.968 30.769 3.71 0.00 0.00 2.52
1641 1824 7.599630 ACGTTAACTCTACAACAACAAAAGA 57.400 32.000 3.71 0.00 0.00 2.52
1642 1825 8.572151 CAAACGTTAACTCTACAACAACAAAAG 58.428 33.333 0.00 0.00 0.00 2.27
1643 1826 7.060864 GCAAACGTTAACTCTACAACAACAAAA 59.939 33.333 0.00 0.00 0.00 2.44
1644 1827 6.523893 GCAAACGTTAACTCTACAACAACAAA 59.476 34.615 0.00 0.00 0.00 2.83
1645 1828 6.022821 GCAAACGTTAACTCTACAACAACAA 58.977 36.000 0.00 0.00 0.00 2.83
1646 1829 5.121925 TGCAAACGTTAACTCTACAACAACA 59.878 36.000 0.00 0.00 0.00 3.33
1647 1830 5.561993 TGCAAACGTTAACTCTACAACAAC 58.438 37.500 0.00 0.00 0.00 3.32
1648 1831 5.798015 TGCAAACGTTAACTCTACAACAA 57.202 34.783 0.00 0.00 0.00 2.83
1649 1832 5.524281 TCATGCAAACGTTAACTCTACAACA 59.476 36.000 0.00 0.00 0.00 3.33
1650 1833 5.981174 TCATGCAAACGTTAACTCTACAAC 58.019 37.500 0.00 0.00 0.00 3.32
1651 1834 6.293190 CCTTCATGCAAACGTTAACTCTACAA 60.293 38.462 0.00 0.00 0.00 2.41
1652 1835 5.178623 CCTTCATGCAAACGTTAACTCTACA 59.821 40.000 0.00 0.00 0.00 2.74
1653 1836 5.618561 CCTTCATGCAAACGTTAACTCTAC 58.381 41.667 0.00 0.00 0.00 2.59
1654 1837 4.153475 GCCTTCATGCAAACGTTAACTCTA 59.847 41.667 0.00 0.00 0.00 2.43
1655 1838 3.058224 GCCTTCATGCAAACGTTAACTCT 60.058 43.478 0.00 0.00 0.00 3.24
1656 1839 3.234386 GCCTTCATGCAAACGTTAACTC 58.766 45.455 0.00 0.00 0.00 3.01
1657 1840 2.030274 GGCCTTCATGCAAACGTTAACT 60.030 45.455 0.00 0.00 0.00 2.24
1658 1841 2.324860 GGCCTTCATGCAAACGTTAAC 58.675 47.619 0.00 0.00 0.00 2.01
1659 1842 1.068885 CGGCCTTCATGCAAACGTTAA 60.069 47.619 0.00 0.00 0.00 2.01
1660 1843 0.519519 CGGCCTTCATGCAAACGTTA 59.480 50.000 0.00 0.00 0.00 3.18
1661 1844 1.285641 CGGCCTTCATGCAAACGTT 59.714 52.632 0.00 0.00 0.00 3.99
1662 1845 2.625823 CCGGCCTTCATGCAAACGT 61.626 57.895 0.00 0.00 0.00 3.99
1663 1846 2.179018 CCGGCCTTCATGCAAACG 59.821 61.111 0.00 0.00 0.00 3.60
1664 1847 1.080569 CACCGGCCTTCATGCAAAC 60.081 57.895 0.00 0.00 0.00 2.93
1665 1848 2.929903 GCACCGGCCTTCATGCAAA 61.930 57.895 0.00 0.00 38.00 3.68
1666 1849 2.476852 TAGCACCGGCCTTCATGCAA 62.477 55.000 14.13 0.00 42.56 4.08
1667 1850 2.965520 TAGCACCGGCCTTCATGCA 61.966 57.895 14.13 0.00 42.56 3.96
1668 1851 2.124736 TAGCACCGGCCTTCATGC 60.125 61.111 0.00 1.99 42.56 4.06
1669 1852 0.676466 TTGTAGCACCGGCCTTCATG 60.676 55.000 0.00 0.00 42.56 3.07
1670 1853 0.037590 TTTGTAGCACCGGCCTTCAT 59.962 50.000 0.00 0.00 42.56 2.57
1671 1854 0.037590 ATTTGTAGCACCGGCCTTCA 59.962 50.000 0.00 0.00 42.56 3.02
1672 1855 0.733150 GATTTGTAGCACCGGCCTTC 59.267 55.000 0.00 0.00 42.56 3.46
1673 1856 0.037590 TGATTTGTAGCACCGGCCTT 59.962 50.000 0.00 0.00 42.56 4.35
1674 1857 0.037590 TTGATTTGTAGCACCGGCCT 59.962 50.000 0.00 0.00 42.56 5.19
1679 1862 0.170339 GCCGGTTGATTTGTAGCACC 59.830 55.000 1.90 0.00 0.00 5.01
1701 1884 3.058777 GGCGGTTTAAATCTTCACGACAA 60.059 43.478 0.00 0.00 0.00 3.18
1705 1888 2.222729 CGAGGCGGTTTAAATCTTCACG 60.223 50.000 0.00 0.00 0.00 4.35
1706 1889 2.475685 GCGAGGCGGTTTAAATCTTCAC 60.476 50.000 0.00 0.00 0.00 3.18
1727 1910 1.339631 TGGGGCTGATTAAACGGTCAG 60.340 52.381 0.00 0.00 43.62 3.51
1732 1915 1.201414 GTTGGTGGGGCTGATTAAACG 59.799 52.381 0.00 0.00 0.00 3.60
1737 1920 0.251341 GACTGTTGGTGGGGCTGATT 60.251 55.000 0.00 0.00 0.00 2.57
1772 1956 0.674895 AGGAGATCGTGCAAACTGGC 60.675 55.000 0.00 0.00 0.00 4.85
1773 1957 1.363744 GAGGAGATCGTGCAAACTGG 58.636 55.000 0.00 0.00 0.00 4.00
1828 2027 1.153086 GCTCCCGGTGATGCAAGAT 60.153 57.895 0.00 0.00 0.00 2.40
1832 2031 4.783621 GCAGCTCCCGGTGATGCA 62.784 66.667 23.80 0.00 41.05 3.96
1945 2144 3.957535 CAATGGAGCATCGCCGGC 61.958 66.667 19.07 19.07 34.37 6.13
1949 2148 0.248377 GTGCTTCAATGGAGCATCGC 60.248 55.000 20.30 2.99 40.84 4.58
1965 2164 2.099062 CATCGAAGCGGCTTGTGC 59.901 61.111 21.70 4.83 38.76 4.57
1966 2165 2.099062 GCATCGAAGCGGCTTGTG 59.901 61.111 21.70 15.96 0.00 3.33
1974 2173 3.821881 GATGAAGCAGCATCGAAGC 57.178 52.632 4.05 4.05 35.77 3.86
2003 2202 1.227380 GGAGCATCACTAGTGGCCG 60.227 63.158 22.48 12.05 36.25 6.13
2032 2231 1.225704 CTTCATCTGAGGGCCACCC 59.774 63.158 6.18 0.00 45.90 4.61
2036 2235 1.148048 GGAGCTTCATCTGAGGGCC 59.852 63.158 0.00 0.00 0.00 5.80
2042 2241 2.490509 TGTTGCAATGGAGCTTCATCTG 59.509 45.455 8.28 9.99 34.99 2.90
2043 2242 2.490903 GTGTTGCAATGGAGCTTCATCT 59.509 45.455 8.28 0.00 34.99 2.90
2045 2244 2.230508 CAGTGTTGCAATGGAGCTTCAT 59.769 45.455 0.01 0.01 34.99 2.57
2061 2260 2.614446 CGTCGAGGTCGTCCAGTGT 61.614 63.158 0.51 0.00 40.80 3.55
2064 2263 2.745100 TCCGTCGAGGTCGTCCAG 60.745 66.667 4.18 0.00 41.99 3.86
2069 2268 1.994507 ATGAAGCTCCGTCGAGGTCG 61.995 60.000 4.18 0.00 46.12 4.79
2118 2317 4.201679 CACCTGTCGCCGCCGATA 62.202 66.667 0.00 0.00 46.38 2.92
2127 2326 3.939837 ATGGTCGCAGCACCTGTCG 62.940 63.158 13.25 0.00 37.34 4.35
2154 2353 2.393768 ATCACAGCTTTCGCCGCAG 61.394 57.895 0.00 0.00 36.60 5.18
2166 2512 0.030235 CATCCCGCATTGCATCACAG 59.970 55.000 9.69 0.00 0.00 3.66
2175 2521 1.242076 GCATCTTAGCATCCCGCATT 58.758 50.000 0.00 0.00 46.13 3.56
2176 2522 0.109153 TGCATCTTAGCATCCCGCAT 59.891 50.000 0.00 0.00 46.13 4.73
2189 2535 2.125512 GCCGTCGGTTCTGCATCT 60.126 61.111 13.94 0.00 0.00 2.90
2202 2548 1.153568 CGACATCTGTCATGGCCGT 60.154 57.895 10.69 0.00 44.99 5.68
2203 2549 2.528743 GCGACATCTGTCATGGCCG 61.529 63.158 10.69 0.00 44.99 6.13
2205 2551 2.528743 CCGCGACATCTGTCATGGC 61.529 63.158 8.23 5.16 44.99 4.40
2210 2556 2.432456 TGCACCGCGACATCTGTC 60.432 61.111 8.23 0.07 41.47 3.51
2274 2620 2.811317 CGTCCTCGCCACAGCTTC 60.811 66.667 0.00 0.00 36.60 3.86
2281 2627 3.277211 CTTTCCGTCGTCCTCGCCA 62.277 63.158 0.00 0.00 36.96 5.69
2282 2628 2.506438 CTTTCCGTCGTCCTCGCC 60.506 66.667 0.00 0.00 36.96 5.54
2291 2637 0.179215 CAGCATCGCAACTTTCCGTC 60.179 55.000 0.00 0.00 0.00 4.79
2296 2642 1.080974 GCAGCAGCATCGCAACTTT 60.081 52.632 0.00 0.00 41.58 2.66
2433 2789 2.177594 CTTGCTCCCTCTCCTGCGTT 62.178 60.000 0.00 0.00 0.00 4.84
2435 2791 2.186384 CTTGCTCCCTCTCCTGCG 59.814 66.667 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.